AlfalfaGEDB | MS.gene063425

M. sativa cultivar XinJiangDaYe / MS.gene063425

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF12799.10 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063425.t1	XP_013464339.1	62.7	480	8	1	474	782	632	1111	1.60E-110	410.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063425.t1	Q9SHI2	34.4	398	88	3	553	779	703	1098	2.0e-48	195.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063425.t1	A0A072V8Q5	62.7	480	8	1	474	782	632	1111	1.2e-110	410.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051800	MS.gene063425	0.815888	7.34E-52	-1.69E-46
MS.gene052674	MS.gene063425	0.800792	1.22E-48	-1.69E-46
MS.gene052675	MS.gene063425	0.800605	1.33E-48	-1.69E-46
MS.gene052677	MS.gene063425	0.807204	5.67E-50	-1.69E-46
MS.gene05350	MS.gene063425	0.803958	2.72E-49	-1.69E-46
MS.gene055926	MS.gene063425	0.80994	1.48E-50	-1.69E-46
MS.gene056480	MS.gene063425	0.809465	1.87E-50	-1.69E-46
MS.gene057156	MS.gene063425	-0.81509	1.10E-51	-1.69E-46
MS.gene058081	MS.gene063425	0.841016	6.13E-58	-1.69E-46
MS.gene059438	MS.gene063425	0.888718	4.60E-73	-1.69E-46

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene005045	MS.gene063425	PPI
MS.gene035805	MS.gene063425	PPI
MS.gene063425	MS.gene064542	PPI
MS.gene063425	MS.gene73119	PPI
MS.gene063425	MS.gene07595	PPI

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063425.t1	MTR_2g070020	97.853	652	14	0	1	652	159	810	0.0	1268
MS.gene063425.t1	MTR_2g070020	97.037	135	4	0	648	782	977	1111	1.77e-76	268
MS.gene063425.t1	MTR_1g047670	53.191	658	302	5	1	655	164	818	0.0	615
MS.gene063425.t1	MTR_1g047670	34.362	486	314	2	65	546	84	568	2.03e-71	254
MS.gene063425.t1	MTR_1g047670	35.904	376	240	1	160	535	83	457	2.42e-52	197
MS.gene063425.t1	MTR_1g047670	34.884	344	222	2	210	552	85	427	7.72e-43	168
MS.gene063425.t1	MTR_1g047670	59.130	115	45	1	646	758	977	1091	2.38e-35	145
MS.gene063425.t1	MTR_1g079520	47.076	667	329	5	3	654	110	767	1.82e-168	514
MS.gene063425.t1	MTR_1g079520	34.699	415	261	2	1	414	252	657	5.45e-58	214
MS.gene063425.t1	MTR_1g079520	34.140	372	204	4	207	562	98	444	2.77e-39	157

Showing 1 to 10 of 2,488 entries

Previous1 2 3 4 5…249Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063425.t1	AT1G17230	61.162	654	251	2	1	653	151	802	0.0	798
MS.gene063425.t1	AT1G17230	33.673	490	298	2	84	546	66	555	1.08e-62	229
MS.gene063425.t1	AT1G17230	35.253	434	279	2	120	552	78	510	5.05e-61	224
MS.gene063425.t1	AT1G17230	67.391	138	43	1	646	783	965	1100	3.87e-48	185
MS.gene063425.t1	AT1G17230	34.911	338	219	1	203	540	65	401	1.33e-43	171
MS.gene063425.t1	AT1G17230	61.162	654	251	2	1	653	151	802	0.0	798
MS.gene063425.t1	AT1G17230	33.673	490	298	2	84	546	66	555	9.20e-63	229
MS.gene063425.t1	AT1G17230	35.253	434	279	2	120	552	78	510	3.95e-61	224
MS.gene063425.t1	AT1G17230	67.910	134	43	0	646	779	965	1098	6.47e-48	184
MS.gene063425.t1	AT1G17230	34.911	338	219	1	203	540	65	401	1.28e-43	171

Showing 1 to 10 of 2,356 entries

Previous1 2 3 4 5…236Next

Find 151 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAAGAATCGCTGCGG+TGG	0.595262	2.3:+25840602	None:intergenic
AAATAATTCAGATGTAGGTA+TGG	0.543960	2.3:+25839311	None:intergenic
AAATCACCACCTTGCTCCAA+TGG	0.513354	2.3:+25839366	None:intergenic
AAATGTGACATCTATAGTTT+TGG	0.249876	2.3:-25839432	MS.gene063425:CDS
AACAATGGTTTGTGCCGAGT+AGG	0.635103	2.3:-25840781	MS.gene063425:CDS
AACTATTACTTTCCAAAAGA+AGG	0.385970	2.3:-25840544	MS.gene063425:CDS
AACTTACTAATTTGATTCTA+TGG	0.227699	2.3:-25842175	MS.gene063425:CDS
AAGATAGTGAGCATTGTATC+TGG	0.375154	2.3:-25840685	MS.gene063425:CDS
AAGATATCGGAAGGCTATCG+CGG	0.624637	2.3:-25842052	MS.gene063425:CDS
AAGCTTAGAGTAATAAGAGC+AGG	0.514036	2.3:-25842320	MS.gene063425:CDS

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACACATGACCTCAATATAT+AGG	-	chr2.3:25841919-25841938	MS.gene063425:CDS	30.0%
ACATTGCATGTTAAAAGACT+AGG	+	chr2.3:25840643-25840662	None:intergenic	30.0%
AGAATATGCTTACACAATGA+AGG	-	chr2.3:25842057-25842076	MS.gene063425:CDS	30.0%
CAAAAGATTGTGTATTGGAT+TGG	-	chr2.3:25841313-25841332	MS.gene063425:CDS	30.0%
CTATTTGAAAACCATTTGCA+GGG	-	chr2.3:25839650-25839669	MS.gene063425:intron	30.0%
GATAAATTTCCAATCTCAGA+AGG	+	chr2.3:25840187-25840206	None:intergenic	30.0%
GTATCTAACAATAAGCTGAT+AGG	-	chr2.3:25840661-25840680	MS.gene063425:CDS	30.0%
GTGAAAGTTTAGAGACATTA+GGG	-	chr2.3:25839267-25839286	MS.gene063425:CDS	30.0%
GTTTCAAAATCTTGAACTCA+TGG	-	chr2.3:25839760-25839779	MS.gene063425:intron	30.0%
TAACTGCAACCTATATATTG+AGG	+	chr2.3:25841931-25841950	None:intergenic	30.0%

Showing 1 to 10 of 231 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	25839089	25842453	25839089	ID=MS.gene063425
chr2.3	mRNA	25839089	25842453	25839089	ID=MS.gene063425.t1;Parent=MS.gene063425
chr2.3	exon	25840497	25842453	25840497	ID=MS.gene063425.t1.exon1;Parent=MS.gene063425.t1
chr2.3	CDS	25840497	25842453	25840497	ID=cds.MS.gene063425.t1;Parent=MS.gene063425.t1
chr2.3	exon	25839089	25839483	25839089	ID=MS.gene063425.t1.exon2;Parent=MS.gene063425.t1
chr2.3	CDS	25839089	25839483	25839089	ID=cds.MS.gene063425.t1;Parent=MS.gene063425.t1

Gene Sequence

>MS.gene063425

ATGTATGGTGAAATTCCAAATGAGATTGGAGAACTAACATCACTTGAGGAGTTAGTGATTTATAGCAATAACTTAACCGGAATCATTCCGAAATCAATCAGTAAGTTGAAGAAGCTTAGAGTAATAAGAGCAGGTTTGAATGGTCTTTCAGGAACATTACCTTCAGAAATTAGTGAGTGTGAAAGTTTAGAGACATTAGGGTTAGCACAGAATCAGTTGGTAGGTTCTATTCCAAAAGAGCTTCAAAAGCTTCAGAAACTTACTAATTTGATTCTATGGCAAAACTCTTTTTCTGGTGAGCTTCCTCCTGAGATTGGAAACATTAGTAGCCTTGAATTACTTGCTTTGCATCAAAATTCATTGATTGGTGATGTCCCGAAAGATATCGGAAGGCTATCGCGGTTGAAGAGGTTGTACATGTATACTAATCAGTTGAATGGAACAATTCCACCTGAGTTAGGAAACTGTACTAATGCTGTTGAGATTGATCTTTCGGAAAACCATTTGATTGGTATCATTCCTAAAGAGTTAGGTCAAATCTCTAATCTTACCTTGCTTCACCTATTTGAAAACCATTTGCAGGGTCATATTCCAAAGGAGCTTGGAAATTTGAGGCTGCTAAGAAATTTAGATTTGTCATTGAATAACCTAACTGGTAGAATTCCATTGGAGTTTCAAAATCTTGAACTCATGGAGGATTTGCAGTTATTTGATAATCAACTTGAAGGTGTGATTCCACCTCATCTTGGAGCTGTTAAGAACCTTACTATTCTTGACATATCCGAAAATAATCTTGTCGGTATGATACCGATCCATCTTTGTGAATATCAGCAGCTTCAATTCCTTAGCCTTGGATCAAATAGGCTCTTTGGAAATATTCCTTATAGCTTGAAAACTTGCAAGTCACTTGTGCAGTTAATGTTGGGAGACAATCTTTTGACAGGAAGTTTACCTGTTGAACTGTATGAACTTCATAATCTTACCGCGCTCGAGCTTCATCAGAACCGATTCTCAGGGTTTATTAGCCCTGAAATTGGTCAACTTCGGAATTTAGTTAGGCTTCGCTTGTCAGATAATCATTTTTCTGGTTATCTCCCTTCTGAGATTGGAAATTTATCACAACTTGTCACATTCAATGTCTCGTCTAACAGTTTAGGTGGAAGTATTCCGGATGAATTAGGAAACTGTGTGATGCTGCAGAGGCTTGATCTTAGAGGGAATAAGTTTACTGGTATGCTTCCAAATTCAATTGGAAATCTTGTGAATTTGGAGCTACTAAAAGTTTCTGATAACATGCTTTCTGGAGAAATACCAGGCACTTTGGGAGACCTTATTCGGCTAACTGATTTGGAGCTTGGTGGCAATCGGTTTTCAGGACGAATCTCTTTTCATTTGGGGAGACTCTCTGCTCTTCAAATAGCACTTAACTTGAGTCACAACAATCTTTCTGGTACGATTCCTGATAGCTTAGGGAGCTTGCAAATGCTAGAATCACTTTACTTGAATGATAATCAACTTGTCGGTGAAATTCCTTCATCAATTGGTGAGTTGCCTAGTCTTTTAACATGCAATGTATCTAACAATAAGCTGATAGGAGCTGTTCCTGACACAACTACATTCAGAAAGATGGACTTGACGAATTTTTTGGGGAACAATGGTTTGTGCCGAGTAGGTACTAATCACTGTCATCCATCTTTAGGTTCATCTCATCATGCAAAGCCAGTGAAAGACGGTTTATCAAGGGAAAAGATAGTGAGCATTGTATCTGGAGTGATTGGTTTTGTTTCTCTTATTTTCATAGTTTGTATATGTTGGACTATGATGAGGCGCCACCGCAGCGATTCTTTTGTTTCAATCGAAGAACAAACAAAGTCTAATGTGTTAGATAACTATTACTTTCCAAAAGAAGGCTTCACTTACAATGATCTCTTGGAAGCTACTGGAAATTTTTCAGAAGGTGAAGTTATAGGAAGAGGAGCTTGTGGAACTGTCTATAAAGCTGTTATGAACGATGGTGAAGTTATCGCTGTCAAGAAGCTGAATACTCGAGGTGGAGAAGGAACGAGTATGGACCGAAGCTTCCTTGCGGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATAGTGAAGCTGCATGGATTTTGTTTTCATGAGGATTCAAATCTTCTTTTGTATCAATACATGGAAAATGGAAGCCTTGGAGAAAAGCTTCATTCAAGTTCAAAAGATTGTGTATTGGATTGGAATGTTAGATATAAAATAGCTCTAGGAGCAGCAGAAGGATTATGTTATCTTCATTATGATTGTAAACCTCAAATCATTCATCGCGATATTAAGTCGAACAACATTTTGCTTGATCATATGTTTCAGGCTCATGTTGGAGACTTCGGATTAGCAAAGTTGATCGACTTTTCATTATCAAAATCTATGTCTGCTGTTGCCGGATCATATGGCTACATTGCCCCAGGTACGAATAAGTTCAATACAAAGGCACTACATCAATTATAGTTTACTTTCCTTTGTTGACTTTTATAAAATGAGTTGAAAAAAGAATAGCTTATACTTAGAAAACATATCAAGGGATAGTACCAGCAGAAAATTTCCATTACCTTAATGTTTAGCACAATATTATACCAAGTTGATTTTTCACAATTTTTGTTCTGAAACTACAATTTCAGCTGCATTGACCACAGTAGCCTGCATTATTCCACGATATCGTGGTTCTAACAATTTTAAATTACGGTCCATAACTGCAATGGTGTCCGCAATATAAAAGGTTTTGATGTCGTCTTAATGGCATCGCAACCACACTTTCGACTGTATAGACAACACATGACCTCAATATATAGGTTGCAGTTACATGATTGTAATGTAAGACAATTGCGACTGCGACCACAATTTAGAATCATGATTAAGTCATTGTACCTGCTGCATTCTAATTGTTGCTTGATTTATATTTATTTTCAGAATATGCTTACACAATGAAGGTGACTGAAAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTAACTGGTAGGTCACCAGTGCAACCATTGGAGCAAGGTGGTGATTTAGTGAGTTGGGTGAGGAGATCAATTCAAGCATCCATACCTACATCTGAATTATTTGACAAGAGATTGAATTTGAGTGAACAAAAAACTGTTGAAGAAATGTCTCTTATTCTAAAAATTGCACTGTTTTGCACAAGTTCATCTCCACTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATATGTCAACCAATCACCAAACTCTCCTACATCTGAATGTCCACTTGATGAATATAAAAGCTCTTCTTCCAAAGGTTAG

Protein sequence

>MS.gene063425.t1

MYGEIPNEIGELTSLEELVIYSNNLTGIIPKSISKLKKLRVIRAGLNGLSGTLPSEISECESLETLGLAQNQLVGSIPKELQKLQKLTNLILWQNSFSGELPPEIGNISSLELLALHQNSLIGDVPKDIGRLSRLKRLYMYTNQLNGTIPPELGNCTNAVEIDLSENHLIGIIPKELGQISNLTLLHLFENHLQGHIPKELGNLRLLRNLDLSLNNLTGRIPLEFQNLELMEDLQLFDNQLEGVIPPHLGAVKNLTILDISENNLVGMIPIHLCEYQQLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNLLTGSLPVELYELHNLTALELHQNRFSGFISPEIGQLRNLVRLRLSDNHFSGYLPSEIGNLSQLVTFNVSSNSLGGSIPDELGNCVMLQRLDLRGNKFTGMLPNSIGNLVNLELLKVSDNMLSGEIPGTLGDLIRLTDLELGGNRFSGRISFHLGRLSALQIALNLSHNNLSGTIPDSLGSLQMLESLYLNDNQLVGEIPSSIGELPSLLTCNVSNNKLIGAVPDTTTFRKMDLTNFLGNNGLCRVGTNHCHPSLGSSHHAKPVKDGLSREKIVSIVSGVIGFVSLIFIVCICWTMMRRHRSDSFVSIEEQTKSNVLDNYYFPKEGFTYNDLLEATGNFSEEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVSWVRRSIQASIPTSELFDKRLNLSEQKTVEEMSLILKIALFCTSSSPLNRPTMREVIAMLIDAREYVNQSPNSPTSECPLDEYKSSSSKG