Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063753.t1 | XP_003609805.1 | 98.9 | 285 | 3 | 0 | 1 | 285 | 213 | 497 | 5.30E-152 | 547 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063753.t1 | Q9SEE5 | 76.0 | 283 | 68 | 0 | 1 | 283 | 212 | 494 | 5.1e-119 | 428.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063753.t1 | G7JNZ5 | 98.9 | 285 | 3 | 0 | 1 | 285 | 213 | 497 | 3.8e-152 | 547.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene063753 | 0.807678 | 4.49E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene063753 | 0.814767 | 1.30E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene063753 | 0.810042 | 1.40E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene063753 | 0.810371 | 1.19E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene063753 | 0.818599 | 1.80E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene063753 | 0.807182 | 5.73E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene063753 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene052335 | MS.gene063753 | 0.805336 | 1.40E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene063753 | 0.821278 | 4.40E-53 | -1.69E-46 |
| MS.gene053599 | MS.gene063753 | 0.810034 | 1.41E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene063753 | 0.827409 | 1.59E-54 | -1.69E-46 |
| MS.gene053678 | MS.gene063753 | 0.825847 | 3.75E-54 | -1.69E-46 |
| MS.gene054250 | MS.gene063753 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene063753 | 0.811697 | 6.15E-51 | -1.69E-46 |
| MS.gene057234 | MS.gene063753 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene063753 | 0.816468 | 5.44E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene063753 | 0.82203 | 2.95E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene063753 | 0.822202 | 2.69E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene063753 | 0.804046 | 2.61E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene063753 | 0.808624 | 2.83E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063753.t1 | MTR_4g122670 | 98.947 | 285 | 3 | 0 | 1 | 285 | 213 | 497 | 0.0 | 574 |
| MS.gene063753.t1 | MTR_4g122670 | 98.286 | 175 | 3 | 0 | 1 | 175 | 213 | 387 | 1.50e-116 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063753.t1 | AT3G06580 | 75.439 | 285 | 70 | 0 | 1 | 285 | 212 | 496 | 2.10e-151 | 433 |
Find 62 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCACAAACCTTCAAATTA+AGG | 0.197994 | 8.1:-8493031 | None:intergenic |
| CAGTTCTGCAAACCCATTCT+TGG | 0.249899 | 8.1:-8490146 | None:intergenic |
| TCTCGTGACAATGGTGCTTT+TGG | 0.257971 | 8.1:+8492933 | MS.gene063753:CDS |
| CTGCCACAAATTATAATAAC+AGG | 0.297713 | 8.1:+8490269 | MS.gene063753:CDS |
| TCGATTTCTTCAGCTGTATA+TGG | 0.299037 | 8.1:-8491141 | None:intergenic |
| TGCACATCCGTCGCACGAAT+TGG | 0.320314 | 8.1:-8490181 | None:intergenic |
| ACAATTCATCCTTAATTTGA+AGG | 0.382576 | 8.1:+8493022 | MS.gene063753:CDS |
| AACCCTGTTATTATAATTTG+TGG | 0.392769 | 8.1:-8490272 | None:intergenic |
| CTGAGACTCTGCCAAAGAAT+TGG | 0.400595 | 8.1:-8490233 | None:intergenic |
| GAATATTAATGCATCTTACT+TGG | 0.408856 | 8.1:+8491197 | MS.gene063753:CDS |
| ACGTTGTATCATCAAATCTA+AGG | 0.409282 | 8.1:+8491477 | MS.gene063753:CDS |
| GGGTGGTTGTGCTGTTGCTT+TGG | 0.410900 | 8.1:+8492980 | MS.gene063753:CDS |
| GAAGAAATCGAAGAAGTTAC+CGG | 0.424087 | 8.1:+8491153 | MS.gene063753:CDS |
| ATCTCTGTTATGGCCAAGAA+TGG | 0.430328 | 8.1:+8490133 | MS.gene063753:CDS |
| GGGTTATGTGTATCATTTGC+TGG | 0.433557 | 8.1:+8490888 | MS.gene063753:CDS |
| TCAAATTAAGGATGAATTGT+GGG | 0.440093 | 8.1:-8493019 | None:intergenic |
| TATAATGACTCTCGTTCATA+AGG | 0.441852 | 8.1:-8492649 | None:intergenic |
| AGGAACATTACTACCAATCT+AGG | 0.442473 | 8.1:+8493132 | MS.gene063753:intron |
| CAAGAGGGTATATGCTTTCA+AGG | 0.443777 | 8.1:+8491454 | MS.gene063753:CDS |
| GGCAGAACCACTCGATGGCT+TGG | 0.444907 | 8.1:-8493207 | None:intergenic |
| GGAGCAAGGCTTACTGGAGC+TGG | 0.447955 | 8.1:+8492954 | MS.gene063753:CDS |
| GCACATCCGTCGCACGAATT+GGG | 0.451229 | 8.1:-8490180 | None:intergenic |
| TCGACAGGCAATCTCTGTTA+TGG | 0.454995 | 8.1:+8490123 | None:intergenic |
| GTCATTAAGAAGAACGATCT+TGG | 0.455049 | 8.1:+8493167 | MS.gene063753:CDS |
| CACCCTTGTCTATCCTAGAT+TGG | 0.456265 | 8.1:-8493145 | None:intergenic |
| TTTGTAAGTTCTTCCAACTC+TGG | 0.474401 | 8.1:-8492906 | None:intergenic |
| AAGGCTTACTGGAGCTGGAT+GGG | 0.475755 | 8.1:+8492959 | MS.gene063753:CDS |
| CAAGGCTTACTGGAGCTGGA+TGG | 0.498736 | 8.1:+8492958 | MS.gene063753:CDS |
| GCAGTAATTTATACGAATGC+AGG | 0.500493 | 8.1:+8492675 | MS.gene063753:CDS |
| CTTGAAAGCATATACCCTCT+TGG | 0.502513 | 8.1:-8491453 | None:intergenic |
| ACGGATGTGCAACTGCCTGC+TGG | 0.505754 | 8.1:+8490193 | MS.gene063753:CDS |
| AAAGCAATACAAGTTGCATC+AGG | 0.513624 | 8.1:+8491236 | MS.gene063753:CDS |
| AGGCTTACTGGAGCTGGATG+GGG | 0.516644 | 8.1:+8492960 | MS.gene063753:CDS |
| CTTACTGGAGCTGGATGGGG+TGG | 0.526544 | 8.1:+8492963 | MS.gene063753:CDS |
| TCTCTGTTATGGCCAAGAAT+GGG | 0.526647 | 8.1:+8490134 | MS.gene063753:CDS |
| ATTACCTTCACAGCGAGTAC+AGG | 0.528647 | 8.1:-8490930 | None:intergenic |
| TTCAAATTAAGGATGAATTG+TGG | 0.532594 | 8.1:-8493020 | None:intergenic |
| ATCACAAAAGTCCCACCAGC+AGG | 0.536256 | 8.1:-8490208 | None:intergenic |
| GATGTGCAACTGCCTGCTGG+TGG | 0.536562 | 8.1:+8490196 | MS.gene063753:CDS |
| AATATTCTAAAACTTGAAGA+TGG | 0.541503 | 8.1:-8493228 | None:intergenic |
| TGAAATCAGCTGTCCAGAGT+TGG | 0.548752 | 8.1:+8492893 | MS.gene063753:intron |
| TGATCCTGTACTCGCTGTGA+AGG | 0.552414 | 8.1:+8490926 | MS.gene063753:CDS |
| TACACATAACCCTTCAACAT+CGG | 0.571247 | 8.1:-8490877 | None:intergenic |
| ATTGTGCTCGCTATAAAGCT+AGG | 0.575941 | 8.1:+8490813 | MS.gene063753:CDS |
| TTCTTTGGCAGAGTCTCAGA+AGG | 0.576699 | 8.1:+8490237 | MS.gene063753:CDS |
| ATGTGCAACTGCCTGCTGGT+GGG | 0.581184 | 8.1:+8490197 | MS.gene063753:CDS |
| GAGGAGACGCTAAAGAAACT+TGG | 0.583914 | 8.1:+8492623 | MS.gene063753:CDS |
| CAACACTATCCGATGTTGAA+GGG | 0.588728 | 8.1:+8490868 | MS.gene063753:CDS |
| CGTGTATTCAGAAGCCAAGA+GGG | 0.590972 | 8.1:+8491439 | MS.gene063753:CDS |
| ACAACACTATCCGATGTTGA+AGG | 0.595651 | 8.1:+8490867 | MS.gene063753:CDS |
| CTACCAATCTAGGATAGACA+AGG | 0.596476 | 8.1:+8493142 | MS.gene063753:CDS |
| AAGAAATCGAAGAAGTTACC+GGG | 0.596482 | 8.1:+8491154 | MS.gene063753:CDS |
| GCTAGGAATGGCACCAACTG+AGG | 0.596765 | 8.1:+8490830 | MS.gene063753:CDS |
| ACAAAGATTTCTCGTGACAA+TGG | 0.603732 | 8.1:+8492924 | MS.gene063753:CDS |
| TTTCAACCCAATTCGTGCGA+CGG | 0.604535 | 8.1:+8490174 | MS.gene063753:CDS |
| TTTGCTTCCAAGCCATCGAG+TGG | 0.606040 | 8.1:+8493200 | MS.gene063753:CDS |
| GCTCGCTATAAAGCTAGGAA+TGG | 0.642563 | 8.1:+8490818 | MS.gene063753:CDS |
| AAGATGGCAGAACCACTCGA+TGG | 0.646901 | 8.1:-8493212 | None:intergenic |
| TGCCACAAATTATAATAACA+GGG | 0.672691 | 8.1:+8490270 | MS.gene063753:CDS |
| ACGTGTATTCAGAAGCCAAG+AGG | 0.678724 | 8.1:+8491438 | MS.gene063753:CDS |
| TACCAATCTAGGATAGACAA+GGG | 0.714091 | 8.1:+8493143 | MS.gene063753:CDS |
| AGAAATCGAAGAAGTTACCG+GGG | 0.742768 | 8.1:+8491155 | MS.gene063753:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAAATAGTAAAAGA+AGG | - | chr8.1:8491001-8491020 | None:intergenic | 10.0% |
| !! | ATATATAAAATAGTAATGAA+AGG | - | chr8.1:8490758-8490777 | None:intergenic | 10.0% |
| !!! | ATATAAAATTTTAGTGTTTA+AGG | - | chr8.1:8493076-8493095 | None:intergenic | 10.0% |
| !!! | TACAATATTTTAATTGTTTT+TGG | + | chr8.1:8492706-8492725 | MS.gene063753:intron | 10.0% |
| !!! | AAGATTTGAAATTTTTATGA+AGG | - | chr8.1:8491071-8491090 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTCATTTTGTAAT+TGG | + | chr8.1:8492558-8492577 | MS.gene063753:intron | 15.0% |
| !! | AAATGGCTAAAAATTTATTG+TGG | + | chr8.1:8491315-8491334 | MS.gene063753:intron | 20.0% |
| !! | ATGAGTTAAATTGAATTGAT+CGG | - | chr8.1:8490540-8490559 | None:intergenic | 20.0% |
| !! | GAAAATAATATTGTACTAAC+AGG | - | chr8.1:8490418-8490437 | None:intergenic | 20.0% |
| !!! | CTTTTCTACTTTTCATTAAT+AGG | + | chr8.1:8492184-8492203 | MS.gene063753:intron | 20.0% |
| ! | AAAATTGGCTACAATAAACA+AGG | + | chr8.1:8492062-8492081 | MS.gene063753:intron | 25.0% |
| ! | AAATGAGTCTTAGCTTATAT+TGG | + | chr8.1:8492485-8492504 | MS.gene063753:intron | 25.0% |
| ! | AAATGATTCTTAGCTTATGA+TGG | + | chr8.1:8492372-8492391 | MS.gene063753:intron | 25.0% |
| ! | AACCCTGTTATTATAATTTG+TGG | - | chr8.1:8490275-8490294 | None:intergenic | 25.0% |
| ! | AATGAGTCTTAGCTTATATT+GGG | + | chr8.1:8492486-8492505 | MS.gene063753:intron | 25.0% |
| ! | AATGATTCTTAGCTTATGAT+GGG | + | chr8.1:8492373-8492392 | MS.gene063753:intron | 25.0% |
| ! | AGACAGACTAAATGAATATT+GGG | - | chr8.1:8492313-8492332 | None:intergenic | 25.0% |
| ! | ATAAACAAGGAGCAAAATTT+AGG | + | chr8.1:8492075-8492094 | MS.gene063753:intron | 25.0% |
| ! | ATACATGAAATCTTCACTAA+TGG | - | chr8.1:8491278-8491297 | None:intergenic | 25.0% |
| ! | ATAGTAGTAAAGCCAAAAAT+TGG | - | chr8.1:8491995-8492014 | None:intergenic | 25.0% |
| ! | ATTAGTGAAGATTTCATGTA+TGG | + | chr8.1:8491277-8491296 | MS.gene063753:intron | 25.0% |
| ! | GAATATTAATGCATCTTACT+TGG | + | chr8.1:8491197-8491216 | MS.gene063753:CDS | 25.0% |
| ! | TACATGAAATCTTCACTAAT+GGG | - | chr8.1:8491277-8491296 | None:intergenic | 25.0% |
| ! | TCAAATTAAGGATGAATTGT+GGG | - | chr8.1:8493022-8493041 | None:intergenic | 25.0% |
| ! | TGCCACAAATTATAATAACA+GGG | + | chr8.1:8490270-8490289 | MS.gene063753:CDS | 25.0% |
| ! | TTCAAATTAAGGATGAATTG+TGG | - | chr8.1:8493023-8493042 | None:intergenic | 25.0% |
| ! | TTTCTCGTTTCAAACAAAAT+TGG | - | chr8.1:8492136-8492155 | None:intergenic | 25.0% |
| !! | ACAATTCATCCTTAATTTGA+AGG | + | chr8.1:8493022-8493041 | MS.gene063753:CDS | 25.0% |
| !! | AGATGGTTTAAATTTGAAAC+AGG | + | chr8.1:8491688-8491707 | MS.gene063753:intron | 25.0% |
| !! | AGGTAAAGAAATGTCTTATT+AGG | - | chr8.1:8490595-8490614 | None:intergenic | 25.0% |
| !! | CTTACAAGCTAATTTTGTTA+GGG | - | chr8.1:8491734-8491753 | None:intergenic | 25.0% |
| !! | GTTTTGCATCTCTATAAAAT+TGG | + | chr8.1:8492047-8492066 | MS.gene063753:intron | 25.0% |
| !! | TTTGATAATTCGCATGTAAA+AGG | + | chr8.1:8491614-8491633 | MS.gene063753:intron | 25.0% |
| !!! | TTCTACTTTTCATTAATAGG+TGG | + | chr8.1:8492187-8492206 | MS.gene063753:intron | 25.0% |
| !!! | TTTATAGCTTCTAGAACAAT+TGG | + | chr8.1:8491590-8491609 | MS.gene063753:intron | 25.0% |
| ACGTTGTATCATCAAATCTA+AGG | + | chr8.1:8491477-8491496 | MS.gene063753:CDS | 30.0% | |
| AGGATTCTCTTTACAATACA+TGG | + | chr8.1:8492768-8492787 | MS.gene063753:intron | 30.0% | |
| AGTCTGTCTGGTATATAAAT+GGG | + | chr8.1:8492324-8492343 | MS.gene063753:intron | 30.0% | |
| AGTCTGTCTGGTATATAAAT+TGG | + | chr8.1:8492324-8492343 | MS.gene063753:intron | 30.0% | |
| ATACTCCCTAAATACTATTC+TGG | + | chr8.1:8490361-8490380 | MS.gene063753:intron | 30.0% | |
| ATGATTCTTAGCTTATGATG+GGG | + | chr8.1:8492374-8492393 | MS.gene063753:intron | 30.0% | |
| ATTGTAAAGAGAATCCTTCT+GGG | - | chr8.1:8492765-8492784 | None:intergenic | 30.0% | |
| CAATATTCATTTAGTCTGTC+TGG | + | chr8.1:8492312-8492331 | MS.gene063753:intron | 30.0% | |
| CAGACAGACTAAATGAATAT+TGG | - | chr8.1:8492314-8492333 | None:intergenic | 30.0% | |
| CTGCCACAAATTATAATAAC+AGG | + | chr8.1:8490269-8490288 | MS.gene063753:CDS | 30.0% | |
| CTGTTCCAGAATAGTATTTA+GGG | - | chr8.1:8490369-8490388 | None:intergenic | 30.0% | |
| GAAGAAACTAAAACCAAAAG+TGG | + | chr8.1:8492110-8492129 | MS.gene063753:intron | 30.0% | |
| GATCACAAACCTTCAAATTA+AGG | - | chr8.1:8493034-8493053 | None:intergenic | 30.0% | |
| GATTAATTCTACATCATTGC+AGG | + | chr8.1:8493112-8493131 | MS.gene063753:intron | 30.0% | |
| GCGTCTTGTAATATATAGAA+AGG | + | chr8.1:8492015-8492034 | MS.gene063753:intron | 30.0% | |
| TAGTCTGTCTGGTATATAAA+TGG | + | chr8.1:8492323-8492342 | MS.gene063753:intron | 30.0% | |
| TATAATGACTCTCGTTCATA+AGG | - | chr8.1:8492652-8492671 | None:intergenic | 30.0% | |
| TATTGTAAAGAGAATCCTTC+TGG | - | chr8.1:8492766-8492785 | None:intergenic | 30.0% | |
| TCTGGTATATAAATTGGATG+AGG | + | chr8.1:8492443-8492462 | MS.gene063753:intron | 30.0% | |
| TCTGTTCCAGAATAGTATTT+AGG | - | chr8.1:8490370-8490389 | None:intergenic | 30.0% | |
| TTATAGCTCATATATGTGCT+TGG | + | chr8.1:8492161-8492180 | MS.gene063753:intron | 30.0% | |
| TTCAAATATTCCTATAGCGA+AGG | - | chr8.1:8491114-8491133 | None:intergenic | 30.0% | |
| ! | ATCTGTAACCAGAATTTTCT+AGG | - | chr8.1:8491672-8491691 | None:intergenic | 30.0% |
| ! | CCTTACAAGCTAATTTTGTT+AGG | - | chr8.1:8491735-8491754 | None:intergenic | 30.0% |
| ! | GCTTTGTTCAATACAGAAAT+AGG | - | chr8.1:8490615-8490634 | None:intergenic | 30.0% |
| ! | TAGAAAATTCTGGTTACAGA+TGG | + | chr8.1:8491671-8491690 | MS.gene063753:intron | 30.0% |
| ! | TATTTCTGTTACAACTGATG+TGG | + | chr8.1:8491031-8491050 | MS.gene063753:intron | 30.0% |
| ! | TATTTTCCTTCCTTGTGTTT+TGG | + | chr8.1:8490431-8490450 | MS.gene063753:intron | 30.0% |
| ! | TCTGTAACCAGAATTTTCTA+GGG | - | chr8.1:8491671-8491690 | None:intergenic | 30.0% |
| ! | TGGTTTAAATTTGAAACAGG+CGG | + | chr8.1:8491691-8491710 | MS.gene063753:intron | 30.0% |
| ! | TTTGGTAATTAACAGGTCAT+GGG | - | chr8.1:8490482-8490501 | None:intergenic | 30.0% |
| ! | TTTTGTGATAGCCAATTCTT+TGG | + | chr8.1:8490222-8490241 | MS.gene063753:CDS | 30.0% |
| !! | AGATAGGGTTAGATTTGTTT+TGG | + | chr8.1:8491882-8491901 | MS.gene063753:intron | 30.0% |
| !! | CACAGAGTTAATTTTAAGAG+TGG | - | chr8.1:8490972-8490991 | None:intergenic | 30.0% |
| !! | CCTAACAAAATTAGCTTGTA+AGG | + | chr8.1:8491732-8491751 | MS.gene063753:intron | 30.0% |
| !! | TTTTGGTAATTAACAGGTCA+TGG | - | chr8.1:8490483-8490502 | None:intergenic | 30.0% |
| AAAGCAATACAAGTTGCATC+AGG | + | chr8.1:8491236-8491255 | MS.gene063753:CDS | 35.0% | |
| AACCCTATCTATATATCGCA+AGG | - | chr8.1:8491872-8491891 | None:intergenic | 35.0% | |
| AAGAAATCGAAGAAGTTACC+GGG | + | chr8.1:8491154-8491173 | MS.gene063753:CDS | 35.0% | |
| AATGTGGTCCTTCCTTAATA+AGG | - | chr8.1:8491771-8491790 | None:intergenic | 35.0% | |
| ACAAAGATTTCTCGTGACAA+TGG | + | chr8.1:8492924-8492943 | MS.gene063753:CDS | 35.0% | |
| ACATTAGCTGCTAAAACCAA+TGG | - | chr8.1:8491374-8491393 | None:intergenic | 35.0% | |
| ACTCCAAACCTTATTAAGGA+AGG | + | chr8.1:8491760-8491779 | MS.gene063753:intron | 35.0% | |
| ACTCCTAACCTTATAAAGGA+TGG | + | chr8.1:8491931-8491950 | MS.gene063753:intron | 35.0% | |
| AGGAACATTACTACCAATCT+AGG | + | chr8.1:8493132-8493151 | MS.gene063753:intron | 35.0% | |
| ATATCTCTTCTAGTCAATGC+GGG | + | chr8.1:8491795-8491814 | MS.gene063753:intron | 35.0% | |
| ATTGGGAATGAAAGAACTAG+TGG | + | chr8.1:8492503-8492522 | MS.gene063753:intron | 35.0% | |
| CACATATCTCTAGTCAATGT+GGG | + | chr8.1:8491956-8491975 | MS.gene063753:intron | 35.0% | |
| CATATCTCTTCTAGTCAATG+CGG | + | chr8.1:8491794-8491813 | MS.gene063753:intron | 35.0% | |
| GAAGAAATCGAAGAAGTTAC+CGG | + | chr8.1:8491153-8491172 | MS.gene063753:CDS | 35.0% | |
| GATCACTCCTAACCTTATAA+AGG | + | chr8.1:8491927-8491946 | MS.gene063753:intron | 35.0% | |
| GATGACTCCAAACCTTATTA+AGG | + | chr8.1:8491756-8491775 | MS.gene063753:intron | 35.0% | |
| GCAGTAATTTATACGAATGC+AGG | + | chr8.1:8492675-8492694 | MS.gene063753:CDS | 35.0% | |
| GTACTAACAGGCTAAAAACT+AGG | - | chr8.1:8490406-8490425 | None:intergenic | 35.0% | |
| GTCATTAAGAAGAACGATCT+TGG | + | chr8.1:8493167-8493186 | MS.gene063753:CDS | 35.0% | |
| GTTGTAACCCTAGAAAATTC+TGG | + | chr8.1:8491661-8491680 | MS.gene063753:intron | 35.0% | |
| TAAAAACGTTCCTTCGCTAT+AGG | + | chr8.1:8491101-8491120 | MS.gene063753:intron | 35.0% | |
| TAATAACCACAAGCTAGATC+AGG | - | chr8.1:8492272-8492291 | None:intergenic | 35.0% | |
| TACACATAACCCTTCAACAT+CGG | - | chr8.1:8490880-8490899 | None:intergenic | 35.0% | |
| TATGTGGTCCATCCTTTATA+AGG | - | chr8.1:8491942-8491961 | None:intergenic | 35.0% | |
| TCGATTTCTTCAGCTGTATA+TGG | - | chr8.1:8491144-8491163 | None:intergenic | 35.0% | |
| TCGGTCAAAGTTACTTAATG+TGG | - | chr8.1:8490521-8490540 | None:intergenic | 35.0% | |
| TCTGGTATATAAATGGGATG+AGG | + | chr8.1:8492330-8492349 | MS.gene063753:intron | 35.0% | |
| TGCCTTGCGATATATAGATA+GGG | + | chr8.1:8491867-8491886 | MS.gene063753:intron | 35.0% | |
| TTATTAAGGAAGGACCACAT+TGG | + | chr8.1:8491770-8491789 | MS.gene063753:intron | 35.0% | |
| TTGTAAAGAGAATCCTTCTG+GGG | - | chr8.1:8492764-8492783 | None:intergenic | 35.0% | |
| TTTGTAAGTTCTTCCAACTC+TGG | - | chr8.1:8492909-8492928 | None:intergenic | 35.0% | |
| ! | CAAATCTAAGGTATGTCTGT+TGG | + | chr8.1:8491489-8491508 | MS.gene063753:intron | 35.0% |
| ! | CAGATGTGAAGCATTTCAAA+AGG | - | chr8.1:8492234-8492253 | None:intergenic | 35.0% |
| ! | TACCAATCTAGGATAGACAA+GGG | + | chr8.1:8493143-8493162 | MS.gene063753:CDS | 35.0% |
| ! | TCCCTAGTCAAACCAATTTT+TGG | + | chr8.1:8491980-8491999 | MS.gene063753:intron | 35.0% |
| ! | TGAAAGGATTAGCAAGTTTC+CGG | - | chr8.1:8490742-8490761 | None:intergenic | 35.0% |
| ! | TTTTAGCCATTTCCTAACTG+TGG | - | chr8.1:8491307-8491326 | None:intergenic | 35.0% |
| !! | AACCAATGGTAATGGTATGT+TGG | - | chr8.1:8491360-8491379 | None:intergenic | 35.0% |
| !! | AACTAGCTTTCAATGTTTGC+AGG | - | chr8.1:8490707-8490726 | None:intergenic | 35.0% |
| !! | AGCCAAAAATTGGTTTGACT+AGG | - | chr8.1:8491985-8492004 | None:intergenic | 35.0% |
| !! | AGTTACTTAATGTGGACTAG+TGG | - | chr8.1:8490513-8490532 | None:intergenic | 35.0% |
| !! | CAAACAAAATTGGCCACTTT+TGG | - | chr8.1:8492126-8492145 | None:intergenic | 35.0% |
| !! | GCCAAAAATTGGTTTGACTA+GGG | - | chr8.1:8491984-8492003 | None:intergenic | 35.0% |
| !! | TGAAAGCTAGTTTGCTTAGA+TGG | + | chr8.1:8490715-8490734 | MS.gene063753:intron | 35.0% |
| !! | TTCTGCCATCTTCAAGTTTT+AGG | + | chr8.1:8493223-8493242 | MS.gene063753:CDS | 35.0% |
| !!! | ACTTTTGAAATTGCCTCAGT+TGG | - | chr8.1:8490846-8490865 | None:intergenic | 35.0% |
| !!! | GAGTGGTTTTGGTAATTAAC+AGG | - | chr8.1:8490489-8490508 | None:intergenic | 35.0% |
| ACAACACTATCCGATGTTGA+AGG | + | chr8.1:8490867-8490886 | MS.gene063753:CDS | 40.0% | |
| AGAAATCGAAGAAGTTACCG+GGG | + | chr8.1:8491155-8491174 | MS.gene063753:CDS | 40.0% | |
| AGCATTTCAAAAGGTTTGCC+TGG | - | chr8.1:8492225-8492244 | None:intergenic | 40.0% | |
| AGGTGGATAATAAGACATCC+AGG | + | chr8.1:8492204-8492223 | MS.gene063753:intron | 40.0% | |
| ATCTCTGTTATGGCCAAGAA+TGG | + | chr8.1:8490133-8490152 | MS.gene063753:CDS | 40.0% | |
| ATTGTGCCAAAACACAAGGA+AGG | - | chr8.1:8490440-8490459 | None:intergenic | 40.0% | |
| ATTGTGCTCGCTATAAAGCT+AGG | + | chr8.1:8490813-8490832 | MS.gene063753:CDS | 40.0% | |
| CAACACTATCCGATGTTGAA+GGG | + | chr8.1:8490868-8490887 | MS.gene063753:CDS | 40.0% | |
| CCACATATCTCTAGTCAATG+TGG | + | chr8.1:8491955-8491974 | MS.gene063753:intron | 40.0% | |
| GCCAGAAATTTCTATCAAGC+CGG | - | chr8.1:8491834-8491853 | None:intergenic | 40.0% | |
| GCTGCTAAAACCAATGGTAA+TGG | - | chr8.1:8491368-8491387 | None:intergenic | 40.0% | |
| GCTGTGAAGGTAATTTAACC+TGG | + | chr8.1:8490939-8490958 | MS.gene063753:intron | 40.0% | |
| GGGTTATGTGTATCATTTGC+TGG | + | chr8.1:8490888-8490907 | MS.gene063753:CDS | 40.0% | |
| GGTCCATCCTTTATAAGGTT+AGG | - | chr8.1:8491937-8491956 | None:intergenic | 40.0% | |
| GGTCCTTCCTTAATAAGGTT+TGG | - | chr8.1:8491766-8491785 | None:intergenic | 40.0% | |
| GTGCCTTGCGATATATAGAT+AGG | + | chr8.1:8491866-8491885 | MS.gene063753:intron | 40.0% | |
| TAGAAGAGATATGGCCAATG+TGG | - | chr8.1:8491787-8491806 | None:intergenic | 40.0% | |
| TCTCTGTTATGGCCAAGAAT+GGG | + | chr8.1:8490134-8490153 | MS.gene063753:CDS | 40.0% | |
| TGCCAACATACCATTACCAT+TGG | + | chr8.1:8491355-8491374 | MS.gene063753:intron | 40.0% | |
| TGGATCTCTAGCTACAATGA+AGG | + | chr8.1:8491902-8491921 | MS.gene063753:intron | 40.0% | |
| TTGCATTGTGCCAAAACACA+AGG | - | chr8.1:8490444-8490463 | None:intergenic | 40.0% | |
| TTGTGTGCACTGTCAATTAG+TGG | + | chr8.1:8492733-8492752 | MS.gene063753:intron | 40.0% | |
| ! | AAATGTAGTCAGCTTTTCCC+CGG | - | chr8.1:8491175-8491194 | None:intergenic | 40.0% |
| ! | CAAGAGGGTATATGCTTTCA+AGG | + | chr8.1:8491454-8491473 | MS.gene063753:CDS | 40.0% |
| ! | CCACATTGACTAGAGATATG+TGG | - | chr8.1:8491958-8491977 | None:intergenic | 40.0% |
| ! | CTACCAATCTAGGATAGACA+AGG | + | chr8.1:8493142-8493161 | MS.gene063753:CDS | 40.0% |
| ! | CTTGAAAGCATATACCCTCT+TGG | - | chr8.1:8491456-8491475 | None:intergenic | 40.0% |
| ! | TCCTCGTCGCTGAAAATTTT+GGG | - | chr8.1:8492608-8492627 | None:intergenic | 40.0% |
| !! | ACCGGCTTGATAGAAATTTC+TGG | + | chr8.1:8491830-8491849 | MS.gene063753:intron | 40.0% |
| !! | CGCATTGACTAGAAGAGATA+TGG | - | chr8.1:8491796-8491815 | None:intergenic | 40.0% |
| !! | TGGTAATGGTATGTTGGCAA+TGG | - | chr8.1:8491354-8491373 | None:intergenic | 40.0% |
| !!! | ATTAGTGGATTTTCCCCAGA+AGG | + | chr8.1:8492748-8492767 | MS.gene063753:intron | 40.0% |
| ACGTGTATTCAGAAGCCAAG+AGG | + | chr8.1:8491438-8491457 | MS.gene063753:CDS | 45.0% | |
| ATGTATGGCGTACCACAGTT+AGG | + | chr8.1:8491292-8491311 | MS.gene063753:intron | 45.0% | |
| ATTACCTTCACAGCGAGTAC+AGG | - | chr8.1:8490933-8490952 | None:intergenic | 45.0% | |
| CACCCTTGTCTATCCTAGAT+TGG | - | chr8.1:8493148-8493167 | None:intergenic | 45.0% | |
| CAGTTCTGCAAACCCATTCT+TGG | - | chr8.1:8490149-8490168 | None:intergenic | 45.0% | |
| CGTGTATTCAGAAGCCAAGA+GGG | + | chr8.1:8491439-8491458 | MS.gene063753:CDS | 45.0% | |
| CTGAGACTCTGCCAAAGAAT+TGG | - | chr8.1:8490236-8490255 | None:intergenic | 45.0% | |
| GAGGAGACGCTAAAGAAACT+TGG | + | chr8.1:8492623-8492642 | MS.gene063753:CDS | 45.0% | |
| GATGGGGATGAAAGAACTAG+TGG | + | chr8.1:8492390-8492409 | MS.gene063753:intron | 45.0% | |
| GCTCGCTATAAAGCTAGGAA+TGG | + | chr8.1:8490818-8490837 | MS.gene063753:CDS | 45.0% | |
| GCTTTATAGCGAGCACAATC+TGG | - | chr8.1:8490812-8490831 | None:intergenic | 45.0% | |
| TGAAATCAGCTGTCCAGAGT+TGG | + | chr8.1:8492893-8492912 | MS.gene063753:intron | 45.0% | |
| TTCTTTGGCAGAGTCTCAGA+AGG | + | chr8.1:8490237-8490256 | MS.gene063753:CDS | 45.0% | |
| TTTAAGAGTGGCATCACACC+AGG | - | chr8.1:8490960-8490979 | None:intergenic | 45.0% | |
| TTTCAACCCAATTCGTGCGA+CGG | + | chr8.1:8490174-8490193 | MS.gene063753:CDS | 45.0% | |
| ! | ACCCAAAATTTTCAGCGACG+AGG | + | chr8.1:8492604-8492623 | MS.gene063753:intron | 45.0% |
| ! | CTCCTCGTCGCTGAAAATTT+TGG | - | chr8.1:8492609-8492628 | None:intergenic | 45.0% |
| ! | TCTCGTGACAATGGTGCTTT+TGG | + | chr8.1:8492933-8492952 | MS.gene063753:CDS | 45.0% |
| !! | GCTAGTTTGCTTAGATGGAC+CGG | + | chr8.1:8490720-8490739 | MS.gene063753:intron | 45.0% |
| !! | TAATGTGGACTAGTGGTGAG+TGG | - | chr8.1:8490506-8490525 | None:intergenic | 45.0% |
| !! | TCTATCAAGCCGGTTTGACT+AGG | - | chr8.1:8491824-8491843 | None:intergenic | 45.0% |
| !!! | ACAATGGTGCTTTTGGAGCA+AGG | + | chr8.1:8492940-8492959 | MS.gene063753:CDS | 45.0% |
| !!! | TTTACTATTTAAATTTTATA+TGG | + | chr8.1:8491004-8491023 | MS.gene063753:intron | 5.0% |
| AAGATGGCAGAACCACTCGA+TGG | - | chr8.1:8493215-8493234 | None:intergenic | 50.0% | |
| AAGGCTTACTGGAGCTGGAT+GGG | + | chr8.1:8492959-8492978 | MS.gene063753:CDS | 50.0% | |
| ATCACAAAAGTCCCACCAGC+AGG | - | chr8.1:8490211-8490230 | None:intergenic | 50.0% | |
| GGCGTACCACAGTTAGGAAA+TGG | + | chr8.1:8491298-8491317 | MS.gene063753:intron | 50.0% | |
| TGATCCTGTACTCGCTGTGA+AGG | + | chr8.1:8490926-8490945 | MS.gene063753:CDS | 50.0% | |
| TGCGGGATTCCTAGTCAAAC+CGG | + | chr8.1:8491812-8491831 | MS.gene063753:intron | 50.0% | |
| TTTGCTTCCAAGCCATCGAG+TGG | + | chr8.1:8493200-8493219 | MS.gene063753:CDS | 50.0% | |
| ! | TACGTGCCTGATCTAGCTTG+TGG | + | chr8.1:8492263-8492282 | MS.gene063753:intron | 50.0% |
| !! | GGACTAGTGGTGAGTGGTTT+TGG | - | chr8.1:8490500-8490519 | None:intergenic | 50.0% |
| !!! | GCTTTTGGAGCAAGGCTTAC+TGG | + | chr8.1:8492948-8492967 | MS.gene063753:CDS | 50.0% |
| AGGCTTACTGGAGCTGGATG+GGG | + | chr8.1:8492960-8492979 | MS.gene063753:CDS | 55.0% | |
| ATGTGCAACTGCCTGCTGGT+GGG | + | chr8.1:8490197-8490216 | MS.gene063753:CDS | 55.0% | |
| CAAGGCTTACTGGAGCTGGA+TGG | + | chr8.1:8492958-8492977 | MS.gene063753:CDS | 55.0% | |
| GCACATCCGTCGCACGAATT+GGG | - | chr8.1:8490183-8490202 | None:intergenic | 55.0% | |
| GCTAGGAATGGCACCAACTG+AGG | + | chr8.1:8490830-8490849 | MS.gene063753:CDS | 55.0% | |
| TGCACATCCGTCGCACGAAT+TGG | - | chr8.1:8490184-8490203 | None:intergenic | 55.0% | |
| ! | GGGTGGTTGTGCTGTTGCTT+TGG | + | chr8.1:8492980-8492999 | MS.gene063753:CDS | 55.0% |
| ACGGATGTGCAACTGCCTGC+TGG | + | chr8.1:8490193-8490212 | MS.gene063753:CDS | 60.0% | |
| CTTACTGGAGCTGGATGGGG+TGG | + | chr8.1:8492963-8492982 | MS.gene063753:CDS | 60.0% | |
| GATGTGCAACTGCCTGCTGG+TGG | + | chr8.1:8490196-8490215 | MS.gene063753:CDS | 60.0% | |
| GGAGCAAGGCTTACTGGAGC+TGG | + | chr8.1:8492954-8492973 | MS.gene063753:CDS | 60.0% | |
| GGCAGAACCACTCGATGGCT+TGG | - | chr8.1:8493210-8493229 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 8490130 | 8493244 | 8490130 | ID=MS.gene063753 |
| chr8.1 | mRNA | 8490130 | 8493244 | 8490130 | ID=MS.gene063753.t1;Parent=MS.gene063753 |
| chr8.1 | exon | 8490130 | 8490315 | 8490130 | ID=MS.gene063753.t1.exon1;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8490130 | 8490315 | 8490130 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| chr8.1 | exon | 8490813 | 8490947 | 8490813 | ID=MS.gene063753.t1.exon2;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8490813 | 8490947 | 8490813 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| chr8.1 | exon | 8491123 | 8491257 | 8491123 | ID=MS.gene063753.t1.exon3;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8491123 | 8491257 | 8491123 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| chr8.1 | exon | 8491428 | 8491498 | 8491428 | ID=MS.gene063753.t1.exon4;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8491428 | 8491498 | 8491428 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| chr8.1 | exon | 8492619 | 8492696 | 8492619 | ID=MS.gene063753.t1.exon5;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8492619 | 8492696 | 8492619 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| chr8.1 | exon | 8492902 | 8493043 | 8492902 | ID=MS.gene063753.t1.exon6;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8492902 | 8493043 | 8492902 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| chr8.1 | exon | 8493134 | 8493244 | 8493134 | ID=MS.gene063753.t1.exon7;Parent=MS.gene063753.t1 |
| chr8.1 | CDS | 8493134 | 8493244 | 8493134 | ID=cds.MS.gene063753.t1;Parent=MS.gene063753.t1 |
| Gene Sequence |
| Protein sequence |
