Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063992.t1 | XP_003614188.1 | 99.7 | 362 | 1 | 0 | 1 | 362 | 1 | 362 | 7.50E-220 | 772.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063992.t1 | O04300 | 95.5 | 359 | 15 | 1 | 1 | 358 | 1 | 359 | 8.4e-212 | 737.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063992.t1 | G7JWW6 | 99.7 | 362 | 1 | 0 | 1 | 362 | 1 | 362 | 5.4e-220 | 772.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049320 | MS.gene063992 | -0.807021 | 6.20E-50 | -1.69E-46 |
| MS.gene049633 | MS.gene063992 | -0.801382 | 9.24E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene063992 | -0.805477 | 1.31E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene063992 | -0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene063992 | -0.839733 | 1.33E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene063992 | -0.825094 | 5.65E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene063992 | -0.809781 | 1.60E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene063992 | -0.802217 | 6.23E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene063992 | -0.800879 | 1.17E-48 | -1.69E-46 |
| MS.gene055362 | MS.gene063992 | -0.80595 | 1.04E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene063992 | -0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene063992 | -0.828521 | 8.58E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene063992 | -0.812571 | 3.96E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene063992 | -0.824283 | 8.78E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene063992 | -0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene063992 | -0.804807 | 1.81E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene063992 | -0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene063992 | -0.81203 | 5.20E-51 | -1.69E-46 |
| MS.gene059667 | MS.gene063992 | -0.80985 | 1.54E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene063992 | -0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene060778 | MS.gene063992 | -0.802889 | 4.53E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene063992 | -0.817326 | 3.49E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063992.t1 | MTR_5g046030 | 99.724 | 362 | 1 | 0 | 1 | 362 | 1 | 362 | 0.0 | 753 |
| MS.gene063992.t1 | MTR_7g015970 | 90.323 | 341 | 33 | 0 | 5 | 345 | 2 | 342 | 0.0 | 655 |
| MS.gene063992.t1 | MTR_2g461970 | 88.338 | 343 | 40 | 0 | 3 | 345 | 2 | 344 | 0.0 | 648 |
| MS.gene063992.t1 | MTR_6g015905 | 87.246 | 345 | 41 | 1 | 1 | 345 | 1 | 342 | 0.0 | 640 |
| MS.gene063992.t1 | MTR_7g079490 | 49.706 | 340 | 165 | 4 | 13 | 347 | 9 | 347 | 2.84e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063992.t1 | AT3G08900 | 88.473 | 347 | 40 | 0 | 1 | 347 | 4 | 350 | 0.0 | 660 |
| MS.gene063992.t1 | AT5G15650 | 89.766 | 342 | 35 | 0 | 7 | 348 | 14 | 355 | 0.0 | 650 |
| MS.gene063992.t1 | AT3G02230 | 90.801 | 337 | 31 | 0 | 9 | 345 | 16 | 352 | 0.0 | 649 |
| MS.gene063992.t1 | AT5G50750 | 77.616 | 344 | 77 | 0 | 11 | 354 | 14 | 357 | 0.0 | 587 |
| MS.gene063992.t1 | AT5G16510 | 50.292 | 342 | 164 | 3 | 12 | 348 | 8 | 348 | 1.90e-126 | 367 |
| MS.gene063992.t1 | AT5G16510 | 50.292 | 342 | 164 | 3 | 12 | 348 | 8 | 348 | 1.90e-126 | 367 |
Find 102 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTTGTATCTCCTTTA+AGG | 0.124351 | 5.2:+36661846 | MS.gene063992:CDS |
| CTGCCGTTTCTCACGGTCTT+TGG | 0.210662 | 5.2:+36662993 | MS.gene063992:CDS |
| GAGATGATATTGCTCGAAAA+AGG | 0.241814 | 5.2:-36661719 | None:intergenic |
| TTGTCGTTGCTTTGGTTATA+TGG | 0.255025 | 5.2:+36661876 | MS.gene063992:CDS |
| GTCGGCTAGTTTGACGAAAT+AGG | 0.293350 | 5.2:-36664050 | None:intergenic |
| CCCATTTGTGAATCTGAAAA+AGG | 0.310657 | 5.2:+36663889 | MS.gene063992:CDS |
| ATCTGTGACCATTTGGGACT+TGG | 0.319329 | 5.2:+36663821 | MS.gene063992:CDS |
| AAGGAGATACAAGAAGCTTT+AGG | 0.331748 | 5.2:-36661841 | None:intergenic |
| ACGACAAGCAGAATCCTTAA+AGG | 0.341341 | 5.2:-36661860 | None:intergenic |
| ACAGGTTATCTGTGACCATT+TGG | 0.355312 | 5.2:+36663814 | MS.gene063992:intron |
| GCTTTGCTGTGCCATATGTA+TGG | 0.361149 | 5.2:-36663860 | None:intergenic |
| CCCCATGTGCGGTATGAATC+TGG | 0.375879 | 5.2:+36663210 | MS.gene063992:CDS |
| AGCTCATAATCGAATCCTTC+AGG | 0.379979 | 5.2:-36661784 | None:intergenic |
| TAATGATATCAATAGGATCT+TGG | 0.382219 | 5.2:+36661816 | MS.gene063992:CDS |
| ATGGGTGATGGTCAGCCTAT+TGG | 0.385375 | 5.2:+36663277 | MS.gene063992:CDS |
| CGTCTCTGTATGGATCATAA+AGG | 0.392909 | 5.2:-36662919 | None:intergenic |
| GATTCTGCTTGTCGTTGCTT+TGG | 0.394632 | 5.2:+36661868 | MS.gene063992:CDS |
| AGGGTATCCACGGACGAAAT+CGG | 0.407391 | 5.2:-36662945 | None:intergenic |
| TTTGAGAAGTGGAGTTGGTT+TGG | 0.417532 | 5.2:-36661635 | None:intergenic |
| GGTCACTTGGATTGAAGCTT+GGG | 0.417754 | 5.2:+36664078 | MS.gene063992:CDS |
| TCGGCTAGTTTGACGAAATA+GGG | 0.424878 | 5.2:-36664049 | None:intergenic |
| TGCAATGTACTTCGGACTCA+TGG | 0.434284 | 5.2:+36663258 | MS.gene063992:CDS |
| AAATCGGCACCGTCTCTGTA+TGG | 0.438086 | 5.2:-36662929 | None:intergenic |
| AATGATATCAATAGGATCTT+GGG | 0.439584 | 5.2:+36661817 | MS.gene063992:CDS |
| ACAATCGTAATGATATCAAT+AGG | 0.445544 | 5.2:+36661809 | MS.gene063992:CDS |
| ATATCATCGTAACGTCCAAT+AGG | 0.448793 | 5.2:-36663292 | None:intergenic |
| CTATAGCAAGTTGTTTCACT+TGG | 0.453205 | 5.2:-36664158 | None:intergenic |
| CAGGTTATCTGTGACCATTT+GGG | 0.455327 | 5.2:+36663815 | MS.gene063992:intron |
| ACACCTAGTGTTCCTCTCAT+GGG | 0.456133 | 5.2:-36663059 | None:intergenic |
| AATCGAGGTTGCGGATGGTT+GGG | 0.457285 | 5.2:-36661678 | None:intergenic |
| CATTGATCTCATGGCCAGTT+GGG | 0.461837 | 5.2:-36662838 | None:intergenic |
| TGTGTTGGAGCATCATAATC+AGG | 0.463164 | 5.2:-36663025 | None:intergenic |
| TGCTGTTATGACCATTCCTA+AGG | 0.466819 | 5.2:+36663177 | MS.gene063992:CDS |
| GTCCCCACTGCCGTTTCTCA+CGG | 0.471216 | 5.2:+36662986 | MS.gene063992:CDS |
| AGGAGTACAAAGGTATCTTC+TGG | 0.475804 | 5.2:+36663909 | MS.gene063992:CDS |
| ATGAGTCCGAAGTACATTGC+AGG | 0.478365 | 5.2:-36663256 | None:intergenic |
| AAATCGAGGTTGCGGATGGT+TGG | 0.479416 | 5.2:-36661679 | None:intergenic |
| CACACCTAGTGTTCCTCTCA+TGG | 0.479582 | 5.2:-36663060 | None:intergenic |
| GTCTCTGTATGGATCATAAA+GGG | 0.483643 | 5.2:-36662918 | None:intergenic |
| GTGGGCTGGCTGGTGCATAA+AGG | 0.491087 | 5.2:+36663315 | MS.gene063992:CDS |
| TCAGACAAAGCTTCTGAGGC+TGG | 0.491454 | 5.2:+36664133 | MS.gene063992:CDS |
| TGGTCACTTGGATTGAAGCT+TGG | 0.492678 | 5.2:+36664077 | MS.gene063992:CDS |
| TGGGGTTTGACAAGCTGTGT+TGG | 0.501069 | 5.2:-36663040 | None:intergenic |
| TACAAAGCAATCATCATCAA+TGG | 0.504987 | 5.2:-36661923 | None:intergenic |
| GAGTTTCTCCTTGACCTGCT+TGG | 0.509458 | 5.2:-36664014 | None:intergenic |
| GCTCAAGTGCATTGATCTCA+TGG | 0.510252 | 5.2:-36662847 | None:intergenic |
| TCGAGTTCATCTTTGAGAAG+TGG | 0.513462 | 5.2:-36661646 | None:intergenic |
| CTTTGCTGTGCCATATGTAT+GGG | 0.513558 | 5.2:-36663859 | None:intergenic |
| ATGGGGAACAGTGTTCCCTT+AGG | 0.514786 | 5.2:-36663193 | None:intergenic |
| AGACCGGACTCCCATACATA+TGG | 0.522972 | 5.2:+36663849 | MS.gene063992:CDS |
| CATCTCATCATTGTTCAAGA+TGG | 0.524066 | 5.2:+36661736 | MS.gene063992:CDS |
| CGTCAAACTAGCCGACGCTA+TGG | 0.524572 | 5.2:+36664057 | MS.gene063992:CDS |
| GGCCAGATTCATACCGCACA+TGG | 0.525210 | 5.2:-36663212 | None:intergenic |
| TCATCTTTGAGAAGTGGAGT+TGG | 0.528603 | 5.2:-36661640 | None:intergenic |
| TTGGGACTTGGAGTGAAGAC+CGG | 0.528668 | 5.2:+36663833 | MS.gene063992:CDS |
| CAGGTTGCTAAAGACCCAAC+TGG | 0.533295 | 5.2:+36662824 | MS.gene063992:intron |
| TTGGACGTTACGATGATATG+TGG | 0.534744 | 5.2:+36663296 | MS.gene063992:CDS |
| GTGCCATATGTATGGGAGTC+CGG | 0.536306 | 5.2:-36663852 | None:intergenic |
| GAGCCAAAGACCGTGAGAAA+CGG | 0.539391 | 5.2:-36662996 | None:intergenic |
| TAGCCGACGCTATGGTCACT+TGG | 0.540087 | 5.2:+36664065 | MS.gene063992:CDS |
| TCTTCACTCCAAGTCCCAAA+TGG | 0.546381 | 5.2:-36663829 | None:intergenic |
| TCCGATCAGCTCACGGTCGA+AGG | 0.546804 | 5.2:-36663233 | None:intergenic |
| GCCTTCGACCGTGAGCTGAT+CGG | 0.550143 | 5.2:+36663232 | MS.gene063992:CDS |
| GCATTGATCTCATGGCCAGT+TGG | 0.552346 | 5.2:-36662839 | None:intergenic |
| ACCTCGATTTCCTCGAGATG+TGG | 0.554905 | 5.2:+36661692 | MS.gene063992:CDS |
| AACTTCAGACAAAGCTTCTG+AGG | 0.554956 | 5.2:+36664129 | MS.gene063992:CDS |
| ATCGGACCTGCAATGTACTT+CGG | 0.556292 | 5.2:+36663250 | MS.gene063992:CDS |
| ACACCTTCACGAAGACTGAA+AGG | 0.560630 | 5.2:-36662965 | None:intergenic |
| TATAGCAAGTTGTTTCACTT+GGG | 0.568823 | 5.2:-36664157 | None:intergenic |
| GCAATGTACTTCGGACTCAT+GGG | 0.570225 | 5.2:+36663259 | MS.gene063992:CDS |
| ACGATGATATGTGGGCTGGC+TGG | 0.572483 | 5.2:+36663305 | MS.gene063992:CDS |
| GACGGTGCCGATTTCGTCCG+TGG | 0.574199 | 5.2:+36662938 | MS.gene063992:CDS |
| TCTCGAGGAAATCGAGGTTG+CGG | 0.577150 | 5.2:-36661687 | None:intergenic |
| CACCTAGTGTTCCTCTCATG+GGG | 0.582074 | 5.2:-36663058 | None:intergenic |
| GAGGAAATCGAGGTTGCGGA+TGG | 0.582735 | 5.2:-36661683 | None:intergenic |
| CACCTTCACGAAGACTGAAA+GGG | 0.590828 | 5.2:-36662964 | None:intergenic |
| AAGACCGTGAGAAACGGCAG+TGG | 0.590990 | 5.2:-36662990 | None:intergenic |
| TGAACTATCCAAGCAGGTCA+AGG | 0.591898 | 5.2:+36664006 | MS.gene063992:CDS |
| CTACATTGAACTATCCAAGC+AGG | 0.592788 | 5.2:+36664000 | MS.gene063992:CDS |
| AAAGTCATCAAAGTTCCTGA+AGG | 0.594403 | 5.2:+36661769 | MS.gene063992:CDS |
| TACCCTTTCAGTCTTCGTGA+AGG | 0.598566 | 5.2:+36662962 | MS.gene063992:CDS |
| GAACAGTGTTCCCTTAGGAA+TGG | 0.601526 | 5.2:-36663188 | None:intergenic |
| CGTTACGATGATATGTGGGC+TGG | 0.604627 | 5.2:+36663301 | MS.gene063992:CDS |
| TACTTCGGACTCATGGGTGA+TGG | 0.607543 | 5.2:+36663265 | MS.gene063992:CDS |
| AAGCAGGTCAAGGAGAAACT+CGG | 0.610094 | 5.2:+36664016 | MS.gene063992:CDS |
| GCCAGATTCATACCGCACAT+GGG | 0.610368 | 5.2:-36663211 | None:intergenic |
| GCTGTTATGACCATTCCTAA+GGG | 0.618371 | 5.2:+36663178 | MS.gene063992:CDS |
| AAAATGGAGTGGATGGACTG+AGG | 0.618470 | 5.2:-36662886 | None:intergenic |
| AAAAGGGTCTCCACATCTCG+AGG | 0.620865 | 5.2:-36661702 | None:intergenic |
| AGACCGTGAGAAACGGCAGT+GGG | 0.625311 | 5.2:-36662989 | None:intergenic |
| AGCTTGTCAAACCCCATGAG+AGG | 0.630478 | 5.2:+36663047 | MS.gene063992:CDS |
| GAAGACTGAAAGGGTATCCA+CGG | 0.633757 | 5.2:-36662955 | None:intergenic |
| TCCACATCTCGAGGAAATCG+AGG | 0.634078 | 5.2:-36661693 | None:intergenic |
| AATCCAAGTGACCATAGCGT+CGG | 0.643925 | 5.2:-36664068 | None:intergenic |
| AATGTAGCATTTCTGAACAG+AGG | 0.647620 | 5.2:-36663984 | None:intergenic |
| CCAGATTCATACCGCACATG+GGG | 0.650766 | 5.2:-36663210 | None:intergenic |
| GGAACACTGTTCCCCATGTG+CGG | 0.651276 | 5.2:+36663199 | MS.gene063992:CDS |
| TTGCAGGTCCGATCAGCTCA+CGG | 0.652893 | 5.2:-36663240 | None:intergenic |
| TGGACGTTACGATGATATGT+GGG | 0.662582 | 5.2:+36663297 | MS.gene063992:CDS |
| AACCCCATGAGAGGAACACT+AGG | 0.672338 | 5.2:+36663056 | MS.gene063992:CDS |
| CTTTATGATCCATACAGAGA+CGG | 0.673054 | 5.2:+36662920 | MS.gene063992:CDS |
| GACCGTGAGAAACGGCAGTG+GGG | 0.724450 | 5.2:-36662988 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAAATGAACAAAA+GGG | - | chr5.2:36661961-36661980 | None:intergenic | 15.0% |
| !! | TCAAATTGTTAACATTTATA+TGG | + | chr5.2:36662454-36662473 | MS.gene063992:intron | 15.0% |
| !!! | TGCTTGAATTTTTTTAAAAT+TGG | + | chr5.2:36662228-36662247 | MS.gene063992:intron | 15.0% |
| !! | AATTCAATGTTAGTTGAAAA+TGG | - | chr5.2:36662652-36662671 | None:intergenic | 20.0% |
| !! | ATTCAATGTTAGTTGAAAAT+GGG | - | chr5.2:36662651-36662670 | None:intergenic | 20.0% |
| !! | CAAAAACAAAAATGAACAAA+AGG | - | chr5.2:36661962-36661981 | None:intergenic | 20.0% |
| !! | CATGTTTATTCTTAATTTCA+TGG | + | chr5.2:36662735-36662754 | MS.gene063992:intron | 20.0% |
| !! | GAAAAAAAATGCATTATTCT+AGG | - | chr5.2:36663672-36663691 | None:intergenic | 20.0% |
| !! | TTGGTAGACTATATATTTAA+GGG | - | chr5.2:36663373-36663392 | None:intergenic | 20.0% |
| !! | TTTGGTAGACTATATATTTA+AGG | - | chr5.2:36663374-36663393 | None:intergenic | 20.0% |
| !!! | AATTTCATTGATTTGTTTCA+TGG | + | chr5.2:36662009-36662028 | MS.gene063992:intron | 20.0% |
| !!! | ATTTCATTGATTTGTTTCAT+GGG | + | chr5.2:36662010-36662029 | MS.gene063992:intron | 20.0% |
| !!! | CTTTTGTTCATTTTTGTTTT+TGG | + | chr5.2:36661960-36661979 | MS.gene063992:intron | 20.0% |
| !!! | GAAATACATTATAGTTTTGT+TGG | + | chr5.2:36662288-36662307 | MS.gene063992:intron | 20.0% |
| !!! | TATACATATGCTTTTGTTTA+CGG | + | chr5.2:36663113-36663132 | MS.gene063992:intron | 20.0% |
| !!! | TCTTTAATTTCAAATTCCTT+GGG | + | chr5.2:36663589-36663608 | MS.gene063992:intron | 20.0% |
| !!! | TTCTTTAATTTCAAATTCCT+TGG | + | chr5.2:36663588-36663607 | MS.gene063992:intron | 20.0% |
| ! | AAAAAATGCATTATTCTAGG+TGG | - | chr5.2:36663669-36663688 | None:intergenic | 25.0% |
| ! | AATGATATCAATAGGATCTT+GGG | + | chr5.2:36661817-36661836 | MS.gene063992:CDS | 25.0% |
| ! | ACAATCGTAATGATATCAAT+AGG | + | chr5.2:36661809-36661828 | MS.gene063992:CDS | 25.0% |
| ! | TAATGATATCAATAGGATCT+TGG | + | chr5.2:36661816-36661835 | MS.gene063992:CDS | 25.0% |
| ! | TATATTTAAGGGTTGTTAAC+AGG | - | chr5.2:36663362-36663381 | None:intergenic | 25.0% |
| ! | TCATGGAATGAAATATGAAA+AGG | + | chr5.2:36662752-36662771 | MS.gene063992:intron | 25.0% |
| ! | TTGTAATAGAAACAGCAATT+TGG | - | chr5.2:36663392-36663411 | None:intergenic | 25.0% |
| !! | AAAACTTTTCCTTTTGCTTT+TGG | + | chr5.2:36662555-36662574 | MS.gene063992:intron | 25.0% |
| !! | TGTTTTATATTTCAATGTGC+AGG | + | chr5.2:36662805-36662824 | MS.gene063992:intron | 25.0% |
| !!! | AGCAAAAGGAAAAGTTTTAA+AGG | - | chr5.2:36662553-36662572 | None:intergenic | 25.0% |
| !!! | AGTGATTTGCTTTTTTTGAA+GGG | + | chr5.2:36662067-36662086 | MS.gene063992:intron | 25.0% |
| !!! | CTAGTTTTTATAGGTTGATT+TGG | + | chr5.2:36662154-36662173 | MS.gene063992:intron | 25.0% |
| !!! | CTTGTTTTTCATTATCTTTC+TGG | + | chr5.2:36662479-36662498 | MS.gene063992:intron | 25.0% |
| !!! | GAATTTGAGCTAGTTTTTAT+AGG | + | chr5.2:36662145-36662164 | MS.gene063992:intron | 25.0% |
| !!! | GATTTGTTATTTGTGTAAGT+TGG | + | chr5.2:36662681-36662700 | MS.gene063992:intron | 25.0% |
| !!! | GTTCATTTTTGTTTTTGGAT+CGG | + | chr5.2:36661965-36661984 | MS.gene063992:intron | 25.0% |
| AATGCAACTAGATACTAGTT+AGG | - | chr5.2:36663740-36663759 | None:intergenic | 30.0% | |
| AGATGATATTGCTCGAAAAA+GGG | - | chr5.2:36661721-36661740 | None:intergenic | 30.0% | |
| ATCGACAATTCATTGATGAA+TGG | + | chr5.2:36663791-36663810 | MS.gene063992:intron | 30.0% | |
| GTAAAGTAAAAAACCCAATG+CGG | - | chr5.2:36663549-36663568 | None:intergenic | 30.0% | |
| TACAAAGCAATCATCATCAA+TGG | - | chr5.2:36661926-36661945 | None:intergenic | 30.0% | |
| TGTAATTAGCTACTTCATTG+TGG | + | chr5.2:36663081-36663100 | MS.gene063992:intron | 30.0% | |
| TTCACAGAAAAATAATCCCA+AGG | - | chr5.2:36663608-36663627 | None:intergenic | 30.0% | |
| TTGAATTGAGTGTGTTTGTT+TGG | + | chr5.2:36662180-36662199 | MS.gene063992:intron | 30.0% | |
| TTTGAATTTGAGCTAGATCT+GGG | + | chr5.2:36662102-36662121 | MS.gene063992:intron | 30.0% | |
| ! | AATCTGAAAAAGGAGTACAA+AGG | + | chr5.2:36663899-36663918 | MS.gene063992:CDS | 30.0% |
| ! | AGTCATTGAGTGTATTTTTC+AGG | + | chr5.2:36663146-36663165 | MS.gene063992:intron | 30.0% |
| ! | TTTTGAATTTGAGCTAGATC+TGG | + | chr5.2:36662101-36662120 | MS.gene063992:intron | 30.0% |
| !! | GAACTTTGATGACTTTTGAA+GGG | - | chr5.2:36661765-36661784 | None:intergenic | 30.0% |
| !! | TAAAGGGTGTTGAAGAAAAA+TGG | - | chr5.2:36662905-36662924 | None:intergenic | 30.0% |
| !! | TTATCTTTCTGGAATGATTG+AGG | + | chr5.2:36662490-36662509 | MS.gene063992:intron | 30.0% |
| !!! | CCTTTTTCAGATTCACAAAT+GGG | - | chr5.2:36663892-36663911 | None:intergenic | 30.0% |
| !!! | CTTTTTTTGAAGGGTTTTAG+GGG | + | chr5.2:36662076-36662095 | MS.gene063992:intron | 30.0% |
| !!! | GAGTGATTTGCTTTTTTTGA+AGG | + | chr5.2:36662066-36662085 | MS.gene063992:intron | 30.0% |
| !!! | GCTTTTTTTGAAGGGTTTTA+GGG | + | chr5.2:36662075-36662094 | MS.gene063992:intron | 30.0% |
| !!! | TCCTTTTTCAGATTCACAAA+TGG | - | chr5.2:36663893-36663912 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTTGAAGGGTTTT+AGG | + | chr5.2:36662074-36662093 | MS.gene063992:intron | 30.0% |
| AAAAAGCCTCCAAAAGCAAA+AGG | - | chr5.2:36662567-36662586 | None:intergenic | 35.0% | |
| AAAGTCATCAAAGTTCCTGA+AGG | + | chr5.2:36661769-36661788 | MS.gene063992:CDS | 35.0% | |
| AAGGAGATACAAGAAGCTTT+AGG | - | chr5.2:36661844-36661863 | None:intergenic | 35.0% | |
| AATGAATTGTCGATCGTGTT+AGG | - | chr5.2:36663785-36663804 | None:intergenic | 35.0% | |
| AATGTAGCATTTCTGAACAG+AGG | - | chr5.2:36663987-36664006 | None:intergenic | 35.0% | |
| AGCTTCTTGTATCTCCTTTA+AGG | + | chr5.2:36661846-36661865 | MS.gene063992:CDS | 35.0% | |
| ATATCATCGTAACGTCCAAT+AGG | - | chr5.2:36663295-36663314 | None:intergenic | 35.0% | |
| ATGTTTGGAAGCAGTAAAGA+AGG | - | chr5.2:36663643-36663662 | None:intergenic | 35.0% | |
| CAATTCATTGATGAATGGAC+AGG | + | chr5.2:36663796-36663815 | MS.gene063992:intron | 35.0% | |
| CATCTCATCATTGTTCAAGA+TGG | + | chr5.2:36661736-36661755 | MS.gene063992:CDS | 35.0% | |
| CCCATTTGTGAATCTGAAAA+AGG | + | chr5.2:36663889-36663908 | MS.gene063992:CDS | 35.0% | |
| CTAATGATTTCAAACTCAGC+TGG | + | chr5.2:36662425-36662444 | MS.gene063992:intron | 35.0% | |
| CTTTATGATCCATACAGAGA+CGG | + | chr5.2:36662920-36662939 | MS.gene063992:CDS | 35.0% | |
| GAGATGATATTGCTCGAAAA+AGG | - | chr5.2:36661722-36661741 | None:intergenic | 35.0% | |
| GTCTCTGTATGGATCATAAA+GGG | - | chr5.2:36662921-36662940 | None:intergenic | 35.0% | |
| GTTCTTCGATATATCTGTGA+CGG | + | chr5.2:36662703-36662722 | MS.gene063992:intron | 35.0% | |
| TACTCACGTGATTACTTAGT+TGG | + | chr5.2:36663413-36663432 | MS.gene063992:intron | 35.0% | |
| TATTCTAGGTGGAAGATGTT+TGG | - | chr5.2:36663658-36663677 | None:intergenic | 35.0% | |
| TGTTTGGAAGCAGTAAAGAA+GGG | - | chr5.2:36663642-36663661 | None:intergenic | 35.0% | |
| TTGAAGAAAAATGGAGTGGA+TGG | - | chr5.2:36662896-36662915 | None:intergenic | 35.0% | |
| ! | ATAACGTGTTTTACCGCATT+GGG | + | chr5.2:36663533-36663552 | MS.gene063992:intron | 35.0% |
| ! | TGTGTTTGTTTGGAACTTCA+TGG | + | chr5.2:36662190-36662209 | MS.gene063992:intron | 35.0% |
| ! | TTGTCGTTGCTTTGGTTATA+TGG | + | chr5.2:36661876-36661895 | MS.gene063992:CDS | 35.0% |
| ! | TTGTTTGGAACTTCATGGTT+AGG | + | chr5.2:36662195-36662214 | MS.gene063992:intron | 35.0% |
| !! | ACTTTTCCTTTTGCTTTTGG+AGG | + | chr5.2:36662558-36662577 | MS.gene063992:intron | 35.0% |
| !! | AGAGGTGCAATCTTTTGAAA+GGG | - | chr5.2:36663969-36663988 | None:intergenic | 35.0% |
| !! | GGAACTTTGATGACTTTTGA+AGG | - | chr5.2:36661766-36661785 | None:intergenic | 35.0% |
| !!! | TGGAGAATGAGTTTTGACTT+TGG | + | chr5.2:36662248-36662267 | MS.gene063992:intron | 35.0% |
| AACTTCAGACAAAGCTTCTG+AGG | + | chr5.2:36664129-36664148 | MS.gene063992:CDS | 40.0% | |
| ACAGGTTATCTGTGACCATT+TGG | + | chr5.2:36663814-36663833 | MS.gene063992:intron | 40.0% | |
| ACGACAAGCAGAATCCTTAA+AGG | - | chr5.2:36661863-36661882 | None:intergenic | 40.0% | |
| AGCTCATAATCGAATCCTTC+AGG | - | chr5.2:36661787-36661806 | None:intergenic | 40.0% | |
| ATTGTCGATCGTGTTAGGTT+TGG | - | chr5.2:36663780-36663799 | None:intergenic | 40.0% | |
| CAGGTTATCTGTGACCATTT+GGG | + | chr5.2:36663815-36663834 | MS.gene063992:intron | 40.0% | |
| CGTCTCTGTATGGATCATAA+AGG | - | chr5.2:36662922-36662941 | None:intergenic | 40.0% | |
| CTACATTGAACTATCCAAGC+AGG | + | chr5.2:36664000-36664019 | MS.gene063992:CDS | 40.0% | |
| GCAACTAGATACTAGTTAGG+TGG | - | chr5.2:36663737-36663756 | None:intergenic | 40.0% | |
| GCTGTTATGACCATTCCTAA+GGG | + | chr5.2:36663178-36663197 | MS.gene063992:CDS | 40.0% | |
| TCCAGTTCAAGATGGAGAAT+AGG | + | chr5.2:36662357-36662376 | MS.gene063992:intron | 40.0% | |
| TCCATCTTGAACTGGAATCA+AGG | - | chr5.2:36662353-36662372 | None:intergenic | 40.0% | |
| TCCTATTCTCCATCTTGAAC+TGG | - | chr5.2:36662361-36662380 | None:intergenic | 40.0% | |
| TGCTGTTATGACCATTCCTA+AGG | + | chr5.2:36663177-36663196 | MS.gene063992:CDS | 40.0% | |
| TGGACGTTACGATGATATGT+GGG | + | chr5.2:36663297-36663316 | MS.gene063992:CDS | 40.0% | |
| TTGGACGTTACGATGATATG+TGG | + | chr5.2:36663296-36663315 | MS.gene063992:CDS | 40.0% | |
| TTGTCGATCGTGTTAGGTTT+GGG | - | chr5.2:36663779-36663798 | None:intergenic | 40.0% | |
| ! | CATAACGTGTTTTACCGCAT+TGG | + | chr5.2:36663532-36663551 | MS.gene063992:intron | 40.0% |
| ! | CTTTGCTGTGCCATATGTAT+GGG | - | chr5.2:36663862-36663881 | None:intergenic | 40.0% |
| ! | GGTGTTGAAGAAAAATGGAG+TGG | - | chr5.2:36662900-36662919 | None:intergenic | 40.0% |
| ! | TCATCTTTGAGAAGTGGAGT+TGG | - | chr5.2:36661643-36661662 | None:intergenic | 40.0% |
| ! | TCGAGTTCATCTTTGAGAAG+TGG | - | chr5.2:36661649-36661668 | None:intergenic | 40.0% |
| ! | TGTGTTGGAGCATCATAATC+AGG | - | chr5.2:36663028-36663047 | None:intergenic | 40.0% |
| ! | TTTGAGAAGTGGAGTTGGTT+TGG | - | chr5.2:36661638-36661657 | None:intergenic | 40.0% |
| !! | AGGAGTACAAAGGTATCTTC+TGG | + | chr5.2:36663909-36663928 | MS.gene063992:CDS | 40.0% |
| !! | CAGAGGTGCAATCTTTTGAA+AGG | - | chr5.2:36663970-36663989 | None:intergenic | 40.0% |
| !! | TCGGCTAGTTTGACGAAATA+GGG | - | chr5.2:36664052-36664071 | None:intergenic | 40.0% |
| !! | TTGCTTTTGGAGGCTTTTTG+TGG | + | chr5.2:36662568-36662587 | MS.gene063992:intron | 40.0% |
| AAGCAGGTCAAGGAGAAACT+CGG | + | chr5.2:36664016-36664035 | MS.gene063992:CDS | 45.0% | |
| AATCCAAGTGACCATAGCGT+CGG | - | chr5.2:36664071-36664090 | None:intergenic | 45.0% | |
| ACACCTAGTGTTCCTCTCAT+GGG | - | chr5.2:36663062-36663081 | None:intergenic | 45.0% | |
| ACACCTTCACGAAGACTGAA+AGG | - | chr5.2:36662968-36662987 | None:intergenic | 45.0% | |
| AGGGTTGCAGCTTGGAAAAA+TGG | - | chr5.2:36663950-36663969 | None:intergenic | 45.0% | |
| ATCGGACCTGCAATGTACTT+CGG | + | chr5.2:36663250-36663269 | MS.gene063992:CDS | 45.0% | |
| ATGAGTCCGAAGTACATTGC+AGG | - | chr5.2:36663259-36663278 | None:intergenic | 45.0% | |
| CACCTTCACGAAGACTGAAA+GGG | - | chr5.2:36662967-36662986 | None:intergenic | 45.0% | |
| CATTGATCTCATGGCCAGTT+GGG | - | chr5.2:36662841-36662860 | None:intergenic | 45.0% | |
| GAACAGTGTTCCCTTAGGAA+TGG | - | chr5.2:36663191-36663210 | None:intergenic | 45.0% | |
| GATTCTGCTTGTCGTTGCTT+TGG | + | chr5.2:36661868-36661887 | MS.gene063992:CDS | 45.0% | |
| GCAATGTACTTCGGACTCAT+GGG | + | chr5.2:36663259-36663278 | MS.gene063992:CDS | 45.0% | |
| GCCTTGATTCCAGTTCAAGA+TGG | + | chr5.2:36662349-36662368 | MS.gene063992:intron | 45.0% | |
| GGTCACTTGGATTGAAGCTT+GGG | + | chr5.2:36664078-36664097 | MS.gene063992:CDS | 45.0% | |
| TACCCTTTCAGTCTTCGTGA+AGG | + | chr5.2:36662962-36662981 | MS.gene063992:CDS | 45.0% | |
| TCTTCACTCCAAGTCCCAAA+TGG | - | chr5.2:36663832-36663851 | None:intergenic | 45.0% | |
| TGAACTATCCAAGCAGGTCA+AGG | + | chr5.2:36664006-36664025 | MS.gene063992:CDS | 45.0% | |
| TGCAATGTACTTCGGACTCA+TGG | + | chr5.2:36663258-36663277 | MS.gene063992:CDS | 45.0% | |
| TGGTCACTTGGATTGAAGCT+TGG | + | chr5.2:36664077-36664096 | MS.gene063992:CDS | 45.0% | |
| TGTCGATCGTGTTAGGTTTG+GGG | - | chr5.2:36663778-36663797 | None:intergenic | 45.0% | |
| ! | ATCTGTGACCATTTGGGACT+TGG | + | chr5.2:36663821-36663840 | MS.gene063992:CDS | 45.0% |
| ! | GCTCAAGTGCATTGATCTCA+TGG | - | chr5.2:36662850-36662869 | None:intergenic | 45.0% |
| ! | GCTTTGCTGTGCCATATGTA+TGG | - | chr5.2:36663863-36663882 | None:intergenic | 45.0% |
| !! | AAAATGGAGTGGATGGACTG+AGG | - | chr5.2:36662889-36662908 | None:intergenic | 45.0% |
| !! | CTTTTGAAAGGGTTGCAGCT+TGG | - | chr5.2:36663958-36663977 | None:intergenic | 45.0% |
| !! | GAAGACTGAAAGGGTATCCA+CGG | - | chr5.2:36662958-36662977 | None:intergenic | 45.0% |
| !! | GTCGGCTAGTTTGACGAAAT+AGG | - | chr5.2:36664053-36664072 | None:intergenic | 45.0% |
| AAAAGGGTCTCCACATCTCG+AGG | - | chr5.2:36661705-36661724 | None:intergenic | 50.0% | |
| AAATCGAGGTTGCGGATGGT+TGG | - | chr5.2:36661682-36661701 | None:intergenic | 50.0% | |
| AAATCGGCACCGTCTCTGTA+TGG | - | chr5.2:36662932-36662951 | None:intergenic | 50.0% | |
| AACCCCATGAGAGGAACACT+AGG | + | chr5.2:36663056-36663075 | MS.gene063992:CDS | 50.0% | |
| AATCGAGGTTGCGGATGGTT+GGG | - | chr5.2:36661681-36661700 | None:intergenic | 50.0% | |
| ACCTCGATTTCCTCGAGATG+TGG | + | chr5.2:36661692-36661711 | MS.gene063992:CDS | 50.0% | |
| AGACCGGACTCCCATACATA+TGG | + | chr5.2:36663849-36663868 | MS.gene063992:CDS | 50.0% | |
| AGCTTGTCAAACCCCATGAG+AGG | + | chr5.2:36663047-36663066 | MS.gene063992:CDS | 50.0% | |
| ATGGGGAACAGTGTTCCCTT+AGG | - | chr5.2:36663196-36663215 | None:intergenic | 50.0% | |
| CACACCTAGTGTTCCTCTCA+TGG | - | chr5.2:36663063-36663082 | None:intergenic | 50.0% | |
| CACCTAGTGTTCCTCTCATG+GGG | - | chr5.2:36663061-36663080 | None:intergenic | 50.0% | |
| CAGGTTGCTAAAGACCCAAC+TGG | + | chr5.2:36662824-36662843 | MS.gene063992:intron | 50.0% | |
| CCAGATTCATACCGCACATG+GGG | - | chr5.2:36663213-36663232 | None:intergenic | 50.0% | |
| CGTTACGATGATATGTGGGC+TGG | + | chr5.2:36663301-36663320 | MS.gene063992:CDS | 50.0% | |
| GAGCCAAAGACCGTGAGAAA+CGG | - | chr5.2:36662999-36663018 | None:intergenic | 50.0% | |
| GAGTTTCTCCTTGACCTGCT+TGG | - | chr5.2:36664017-36664036 | None:intergenic | 50.0% | |
| GCCAGATTCATACCGCACAT+GGG | - | chr5.2:36663214-36663233 | None:intergenic | 50.0% | |
| GTGCCATATGTATGGGAGTC+CGG | - | chr5.2:36663855-36663874 | None:intergenic | 50.0% | |
| TACTTCGGACTCATGGGTGA+TGG | + | chr5.2:36663265-36663284 | MS.gene063992:CDS | 50.0% | |
| TCCACATCTCGAGGAAATCG+AGG | - | chr5.2:36661696-36661715 | None:intergenic | 50.0% | |
| TCTCGAGGAAATCGAGGTTG+CGG | - | chr5.2:36661690-36661709 | None:intergenic | 50.0% | |
| TGGGGTTTGACAAGCTGTGT+TGG | - | chr5.2:36663043-36663062 | None:intergenic | 50.0% | |
| TTGGGACTTGGAGTGAAGAC+CGG | + | chr5.2:36663833-36663852 | MS.gene063992:CDS | 50.0% | |
| ! | AGGGTATCCACGGACGAAAT+CGG | - | chr5.2:36662948-36662967 | None:intergenic | 50.0% |
| ! | ATGGGTGATGGTCAGCCTAT+TGG | + | chr5.2:36663277-36663296 | MS.gene063992:CDS | 50.0% |
| ! | GCATTGATCTCATGGCCAGT+TGG | - | chr5.2:36662842-36662861 | None:intergenic | 50.0% |
| !! | TCAGACAAAGCTTCTGAGGC+TGG | + | chr5.2:36664133-36664152 | MS.gene063992:CDS | 50.0% |
| AAGACCGTGAGAAACGGCAG+TGG | - | chr5.2:36662993-36663012 | None:intergenic | 55.0% | |
| AGACCGTGAGAAACGGCAGT+GGG | - | chr5.2:36662992-36663011 | None:intergenic | 55.0% | |
| CCCCATGTGCGGTATGAATC+TGG | + | chr5.2:36663210-36663229 | MS.gene063992:CDS | 55.0% | |
| CGTCAAACTAGCCGACGCTA+TGG | + | chr5.2:36664057-36664076 | MS.gene063992:CDS | 55.0% | |
| GAGGAAATCGAGGTTGCGGA+TGG | - | chr5.2:36661686-36661705 | None:intergenic | 55.0% | |
| GGAACACTGTTCCCCATGTG+CGG | + | chr5.2:36663199-36663218 | MS.gene063992:CDS | 55.0% | |
| GGCCAGATTCATACCGCACA+TGG | - | chr5.2:36663215-36663234 | None:intergenic | 55.0% | |
| TAGCCGACGCTATGGTCACT+TGG | + | chr5.2:36664065-36664084 | MS.gene063992:CDS | 55.0% | |
| TTGCAGGTCCGATCAGCTCA+CGG | - | chr5.2:36663243-36663262 | None:intergenic | 55.0% | |
| ! | CTGCCGTTTCTCACGGTCTT+TGG | + | chr5.2:36662993-36663012 | MS.gene063992:CDS | 55.0% |
| !! | ACGATGATATGTGGGCTGGC+TGG | + | chr5.2:36663305-36663324 | MS.gene063992:CDS | 55.0% |
| GACCGTGAGAAACGGCAGTG+GGG | - | chr5.2:36662991-36663010 | None:intergenic | 60.0% | |
| GCCTTCGACCGTGAGCTGAT+CGG | + | chr5.2:36663232-36663251 | MS.gene063992:CDS | 60.0% | |
| TCCGATCAGCTCACGGTCGA+AGG | - | chr5.2:36663236-36663255 | None:intergenic | 60.0% | |
| ! | GTCCCCACTGCCGTTTCTCA+CGG | + | chr5.2:36662986-36663005 | MS.gene063992:CDS | 60.0% |
| !! | GTGGGCTGGCTGGTGCATAA+AGG | + | chr5.2:36663315-36663334 | MS.gene063992:CDS | 60.0% |
| !! | GACGGTGCCGATTTCGTCCG+TGG | + | chr5.2:36662938-36662957 | MS.gene063992:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 36661622 | 36664165 | 36661622 | ID=MS.gene063992 |
| chr5.2 | mRNA | 36661622 | 36664165 | 36661622 | ID=MS.gene063992.t1;Parent=MS.gene063992 |
| chr5.2 | exon | 36661622 | 36661942 | 36661622 | ID=MS.gene063992.t1.exon1;Parent=MS.gene063992.t1 |
| chr5.2 | CDS | 36661622 | 36661942 | 36661622 | ID=cds.MS.gene063992.t1;Parent=MS.gene063992.t1 |
| chr5.2 | exon | 36662827 | 36663077 | 36662827 | ID=MS.gene063992.t1.exon2;Parent=MS.gene063992.t1 |
| chr5.2 | CDS | 36662827 | 36663077 | 36662827 | ID=cds.MS.gene063992.t1;Parent=MS.gene063992.t1 |
| chr5.2 | exon | 36663168 | 36663336 | 36663168 | ID=MS.gene063992.t1.exon3;Parent=MS.gene063992.t1 |
| chr5.2 | CDS | 36663168 | 36663336 | 36663168 | ID=cds.MS.gene063992.t1;Parent=MS.gene063992.t1 |
| chr5.2 | exon | 36663818 | 36664165 | 36663818 | ID=MS.gene063992.t1.exon4;Parent=MS.gene063992.t1 |
| chr5.2 | CDS | 36663818 | 36664165 | 36663818 | ID=cds.MS.gene063992.t1;Parent=MS.gene063992.t1 |
| Gene Sequence |
| Protein sequence |
