AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049320.t1 MTR_3g095540 98.837 172 2 0 1 172 1 172 1.06e-124 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049320.t1 AT5G64040 70.455 176 43 4 1 172 1 171 1.16e-82 241
MS.gene049320.t1 AT5G64040 66.667 147 40 4 1 143 1 142 6.17e-58 179

Find 40 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTTGCTCTTGATTCTT+TGG 0.156495 3.1:+76211238 None:intergenic
GAGAAATGCTCTTGCTTTAT+TGG 0.157047 3.1:-76211210 MS.gene049320:CDS
GCTGCATCACCAGGGGTTTC+AGG 0.166988 3.1:-76211308 MS.gene049320:CDS
GCTCTTGATTCTTTGGCTTC+AGG 0.250361 3.1:+76211245 None:intergenic
ACCATTCATTACAGAAGATT+TGG 0.264682 3.1:-76209383 MS.gene049320:CDS
GTGCCCTCTGCTGCATCACC+AGG 0.354143 3.1:-76211317 MS.gene049320:CDS
GCCAGCATTGGCAGAAGAAT+TGG 0.362944 3.1:+76211154 None:intergenic
AGAGCATATACAGTGCAATT+TGG 0.365802 3.1:-76209569 MS.gene049320:CDS
GCTTGTAGCTATGCCATATC+TGG 0.368961 3.1:-76211368 MS.gene049320:CDS
CCTTCTGTTTAGCAAGATCT+TGG 0.372726 3.1:+76209513 None:intergenic
TGGCAACCAGTGAAATTCTC+AGG 0.421964 3.1:+76209533 None:intergenic
TCTTGCAAAGTTTGCTCCAC+TGG 0.422179 3.1:+76209589 None:intergenic
CTGAAACAGCAGTGGTGAAA+AGG 0.440735 3.1:+76211180 None:intergenic
ATTGAGCTCAGCACCAGATA+TGG 0.446987 3.1:+76211355 None:intergenic
TCCAATTCTTCTGCCAATGC+TGG 0.447703 3.1:-76211155 MS.gene049320:CDS
ACTTGTTGAGCCTTGATCAA+TGG 0.461753 3.1:+76211275 None:intergenic
TCCAAATCTTCTGTAATGAA+TGG 0.478789 3.1:+76209382 None:intergenic
AAGTTCCCTGAGAATTTCAC+TGG 0.504808 3.1:-76209539 MS.gene049320:CDS
TGCCCTCTGCTGCATCACCA+GGG 0.515970 3.1:-76211316 MS.gene049320:CDS
TGCAAAGTTTGCTCCACTGG+TGG 0.527812 3.1:+76209592 None:intergenic
TTCATCAATAACGCCAGCAT+TGG 0.528232 3.1:+76211142 None:intergenic
GCCCTCTGCTGCATCACCAG+GGG 0.536993 3.1:-76211315 MS.gene049320:CDS
TGAAACAGCAGTGGTGAAAA+GGG 0.537677 3.1:+76211181 None:intergenic
GGAACTTGAATGTGAAGGAA+AGG 0.538060 3.1:-76209362 MS.gene049320:CDS
TATCAAGCTACCATTGATCA+AGG 0.554113 3.1:-76211285 MS.gene049320:CDS
AATCAAGAGCAAGTGATGGA+AGG 0.560441 3.1:-76211232 MS.gene049320:CDS
AACCCCTGGTGATGCAGCAG+AGG 0.560571 3.1:+76211313 None:intergenic
AAAGAATCAAGAGCAAGTGA+TGG 0.584476 3.1:-76211236 MS.gene049320:CDS
AGCATTGGCAGAAGAATTGG+AGG 0.586473 3.1:+76211157 None:intergenic
AGGAATTGAATGACAAGAAG+AGG 0.586876 3.1:-76209619 MS.gene049320:CDS
ACCCCTGGTGATGCAGCAGA+GGG 0.591324 3.1:+76211314 None:intergenic
CCAAGATCTTGCTAAACAGA+AGG 0.606505 3.1:-76209513 MS.gene049320:intron
AAGAAGAGGCTAGCCACCAG+TGG 0.614610 3.1:-76209605 MS.gene049320:CDS
TGAAAAGAGCAAGGCCAACA+AGG 0.620440 3.1:-76211114 MS.gene049320:intron
GATTTGGAACTTGAATGTGA+AGG 0.620793 3.1:-76209367 MS.gene049320:CDS
GGCAACCAGTGAAATTCTCA+GGG 0.626628 3.1:+76209534 None:intergenic
TGAATACCTTGAAAAGAGCA+AGG 0.648345 3.1:-76211123 MS.gene049320:CDS
GGAAAGGACAAATACAAGTG+TGG 0.658819 3.1:-76209346 MS.gene049320:CDS
ATTGGAGGCTGAAACAGCAG+TGG 0.683074 3.1:+76211172 None:intergenic
AGCTTGATACCTGAAACCCC+TGG 0.689347 3.1:+76211299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAAAAAAATATTTAC+AGG - chr3.1:76210898-76210917 MS.gene049320:intron 10.0%
!! ATCAAAAAAAAATATTTACA+GGG - chr3.1:76210899-76210918 MS.gene049320:intron 10.0%
!! TAAAAAAAAATATTTACATG+GGG + chr3.1:76210734-76210753 None:intergenic 10.0%
!! TAAAAATTAAGAAAATTCAA+GGG + chr3.1:76210971-76210990 None:intergenic 10.0%
!!! AAAACATAAATTTTTAAGTT+TGG + chr3.1:76210014-76210033 None:intergenic 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG - chr3.1:76210452-76210471 MS.gene049320:intron 10.0%
!!! AAACATAAATTTTTAAGTTT+GGG + chr3.1:76210013-76210032 None:intergenic 10.0%
!!! TCAAAACAATTTTTTTTTTA+CGG + chr3.1:76210764-76210783 None:intergenic 10.0%
!! CTAAAAATTAAGAAAATTCA+AGG + chr3.1:76210972-76210991 None:intergenic 15.0%
!! TATTAAAGACAAACAATTAA+CGG - chr3.1:76210057-76210076 MS.gene049320:intron 15.0%
!! TTCTTATTATAGGATAAAAT+TGG + chr3.1:76209679-76209698 None:intergenic 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG - chr3.1:76210292-76210311 MS.gene049320:intron 15.0%
!!! AAAACAATTTTTTTTTTACG+GGG + chr3.1:76210762-76210781 None:intergenic 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG - chr3.1:76210453-76210472 MS.gene049320:intron 15.0%
!!! AACATAAATTTTTAAGTTTG+GGG + chr3.1:76210012-76210031 None:intergenic 15.0%
!!! ATCAAAACAAAAAATTTTAC+CGG - chr3.1:76210870-76210889 MS.gene049320:intron 15.0%
!!! CAAAACAATTTTTTTTTTAC+GGG + chr3.1:76210763-76210782 None:intergenic 15.0%
!! AAAAAAAATAGCTTCTAACA+AGG + chr3.1:76209650-76209669 None:intergenic 20.0%
!! AAAAAAATAGCTTCTAACAA+GGG + chr3.1:76209649-76209668 None:intergenic 20.0%
!! AAAAATAATAAGATGCACTA+AGG - chr3.1:76211035-76211054 MS.gene049320:intron 20.0%
!! AACCCAAAATTCAATATAAA+AGG + chr3.1:76210671-76210690 None:intergenic 20.0%
!! ACTCCATAATAAATTGATTA+AGG + chr3.1:76209805-76209824 None:intergenic 20.0%
!! CAATTTATTATGGAGTAAAT+AGG - chr3.1:76209809-76209828 MS.gene049320:intron 20.0%
!! CACAAAATAAATGAGTAAAT+AGG + chr3.1:76210628-76210647 None:intergenic 20.0%
!! CATCCTTAATCAATTTATTA+TGG - chr3.1:76209799-76209818 MS.gene049320:intron 20.0%
!! CGAACAAATAATATTATCAA+GGG + chr3.1:76210997-76211016 None:intergenic 20.0%
!! GAAAAAATAGCATTAGAAAA+TGG + chr3.1:76211292-76211311 None:intergenic 20.0%
!!! AAACAATTTTTTTTTTACGG+GGG + chr3.1:76210761-76210780 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG + chr3.1:76210803-76210822 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr3.1:76210832-76210851 MS.gene049320:intron 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG - chr3.1:76210454-76210473 MS.gene049320:intron 20.0%
!!! ACATAAATTTTTAAGTTTGG+GGG + chr3.1:76210011-76210030 None:intergenic 20.0%
!!! AGCCTTTTATATTGAATTTT+GGG - chr3.1:76210666-76210685 MS.gene049320:intron 20.0%
!!! ATAGCAGATTTTCTTATTAT+AGG + chr3.1:76209689-76209708 None:intergenic 20.0%
!!! ATATTGAATTTTGGGTTAAT+AGG - chr3.1:76210674-76210693 MS.gene049320:intron 20.0%
!!! ATTTAAAAAAAGTACCTTGT+TGG + chr3.1:76209619-76209638 None:intergenic 20.0%
!!! CCTTGATAATATTATTTGTT+CGG - chr3.1:76210995-76211014 MS.gene049320:intron 20.0%
!!! CTTTAATATCTTTTAAGCTA+AGG - chr3.1:76210420-76210439 MS.gene049320:intron 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG + chr3.1:76210119-76210138 None:intergenic 20.0%
!!! TAGCCTTTTATATTGAATTT+TGG - chr3.1:76210665-76210684 MS.gene049320:intron 20.0%
!!! TCAAAACAAAAAATTTTACC+GGG - chr3.1:76210871-76210890 MS.gene049320:intron 20.0%
!!! TTACTCATTTATTTTGTGTA+TGG - chr3.1:76210630-76210649 MS.gene049320:intron 20.0%
!!! TTATTTTGACTGTATGTATA+TGG - chr3.1:76211071-76211090 MS.gene049320:intron 20.0%
!!! TTTGTTTTTGTTATGTCATT+TGG + chr3.1:76210330-76210349 None:intergenic 20.0%
! AAATTGATTAAGGATGTGAT+TGG + chr3.1:76209795-76209814 None:intergenic 25.0%
! AAGAAAATTCAAGGGTTAAT+AGG + chr3.1:76210963-76210982 None:intergenic 25.0%
! AATATTTACAGGGAAAAAAC+CGG - chr3.1:76210909-76210928 MS.gene049320:intron 25.0%
! AATGGTAAATAGGAAAACTT+TGG + chr3.1:76211274-76211293 None:intergenic 25.0%
! ACGGTTATCTTTACTATTTA+AGG - chr3.1:76210076-76210095 MS.gene049320:intron 25.0%
! AGCATTAGAAAATGGTAAAT+AGG + chr3.1:76211284-76211303 None:intergenic 25.0%
! AGTGAAACAAAAGATGTTTA+TGG + chr3.1:76211240-76211259 None:intergenic 25.0%
! ATGACTCTTTCATTCTTAAA+TGG + chr3.1:76210367-76210386 None:intergenic 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr3.1:76210534-76210553 MS.gene049320:intron 25.0%
! CCGAACAAATAATATTATCA+AGG + chr3.1:76210998-76211017 None:intergenic 25.0%
! GTTAGAATTAATTGTTCATG+AGG - chr3.1:76210224-76210243 MS.gene049320:intron 25.0%
! TAACAGAAAAATTTGACAGA+GGG + chr3.1:76209933-76209952 None:intergenic 25.0%
! TACTTTCTGCATAAATGAAA+AGG + chr3.1:76211314-76211333 None:intergenic 25.0%
! TGACTAACTGAAAAATTTGA+CGG - chr3.1:76210498-76210517 MS.gene049320:intron 25.0%
! TGACTCTTTCATTCTTAAAT+GGG + chr3.1:76210366-76210385 None:intergenic 25.0%
!! AAAACAAAAAATTTTACCGG+GGG - chr3.1:76210873-76210892 MS.gene049320:intron 25.0%
!! ATTGACGAAACTTACAATTT+TGG + chr3.1:76210610-76210591 None:intergenic 25.0%
!! CAAAACAAAAAATTTTACCG+GGG - chr3.1:76210872-76210891 MS.gene049320:intron 25.0%
!! TTGACGAAACTTACAATTTT+GGG + chr3.1:76209843-76209862 None:intergenic 25.0%
!!! ACGTTTTATTAATTTCAGAG+AGG - chr3.1:76210566-76210585 MS.gene049320:intron 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG - chr3.1:76210455-76210474 MS.gene049320:intron 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG + chr3.1:76209873-76209892 None:intergenic 25.0%
!!! ATTTTTTTTTGATTTACCCC+CGG + chr3.1:76210892-76210911 None:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG + chr3.1:76210045-76210064 None:intergenic 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG + chr3.1:76209872-76209891 None:intergenic 25.0%
AACAGAAAAATTTGACAGAG+GGG + chr3.1:76209932-76209951 None:intergenic 30.0%
AATATTTACATGGGGAAAAC+CGG + chr3.1:76210726-76210745 None:intergenic 30.0%
ACCATTCATTACAGAAGATT+TGG - chr3.1:76211333-76211352 MS.gene049320:CDS 30.0%
ACGAAACTTACAATTTCATG+GGG - chr3.1:76210595-76210614 MS.gene049320:intron 30.0%
ATTAACGTTGTGCAATTTCA+CGG + chr3.1:76209901-76209920 None:intergenic 30.0%
CCTGTAATATAAGTCATTTC+CGG - chr3.1:76210704-76210723 MS.gene049320:intron 30.0%
CGGAAATGACTTATATTACA+GGG + chr3.1:76210706-76210725 None:intergenic 30.0%
CTAACAGAAAAATTTGACAG+AGG + chr3.1:76209934-76209953 None:intergenic 30.0%
GACGAAACTTACAATTTCAT+GGG - chr3.1:76210594-76210613 MS.gene049320:intron 30.0%
GATAGCAAATCAAGTTATAG+CGG + chr3.1:76209762-76209781 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG - chr3.1:76210533-76210552 MS.gene049320:intron 30.0%
TAACTGAAAAATTTGACGGA+GGG - chr3.1:76210502-76210521 MS.gene049320:intron 30.0%
TCCAAATCTTCTGTAATGAA+TGG + chr3.1:76211337-76211356 None:intergenic 30.0%
TGACGAAACTTACAATTTCA+TGG - chr3.1:76210593-76210612 MS.gene049320:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr3.1:76210535-76210554 MS.gene049320:intron 30.0%
TTGTTCGGAGTATATTTGAA+AGG - chr3.1:76211010-76211029 MS.gene049320:intron 30.0%
! GTTTTTACCTCCTGTAATAT+AGG + chr3.1:76210941-76210960 None:intergenic 30.0%
! TGACGAAACTTACAATTTTG+GGG + chr3.1:76209842-76209861 None:intergenic 30.0%
!! GCTATAACTTGATTTGCTAT+CGG - chr3.1:76209761-76209780 MS.gene049320:intron 30.0%
!! GTTCTAATGTTTTCTGGAAA+TGG - chr3.1:76211392-76211411 MS.gene049320:CDS 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG + chr3.1:76209871-76209890 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG - chr3.1:76210456-76210475 MS.gene049320:intron 30.0%
AAAGAATCAAGAGCAAGTGA+TGG - chr3.1:76209480-76209499 MS.gene049320:intron 35.0%
AACTGAAAAATTTGACGGAG+GGG - chr3.1:76210503-76210522 MS.gene049320:intron 35.0%
ACAGAAAAATTTGACAGAGG+GGG + chr3.1:76209931-76209950 None:intergenic 35.0%
AGAGCATATACAGTGCAATT+TGG - chr3.1:76211147-76211166 MS.gene049320:CDS 35.0%
AGGAATTGAATGACAAGAAG+AGG - chr3.1:76211097-76211116 MS.gene049320:intron 35.0%
ATCACTTGCTCTTGATTCTT+TGG + chr3.1:76209481-76209500 None:intergenic 35.0%
CCGGAAATGACTTATATTAC+AGG + chr3.1:76210707-76210726 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + chr3.1:76210931-76210950 None:intergenic 35.0%
CGAAACTTACAATTTCATGG+GGG - chr3.1:76210596-76210615 MS.gene049320:intron 35.0%
CTAACTGAAAAATTTGACGG+AGG - chr3.1:76210501-76210520 MS.gene049320:intron 35.0%
GAAATGACCTATATTACAGG+AGG - chr3.1:76210931-76210950 MS.gene049320:intron 35.0%
GAGAAATGCTCTTGCTTTAT+TGG - chr3.1:76209506-76209525 MS.gene049320:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr3.1:76210536-76210555 MS.gene049320:intron 35.0%
TATCAAGCTACCATTGATCA+AGG - chr3.1:76209431-76209450 MS.gene049320:intron 35.0%
TGAATACCTTGAAAAGAGCA+AGG - chr3.1:76209593-76209612 MS.gene049320:CDS 35.0%
TGACTGTATGTATATGGTGT+AGG - chr3.1:76211077-76211096 MS.gene049320:intron 35.0%
! GACGAAACTTACAATTTTGG+GGG + chr3.1:76209841-76209860 None:intergenic 35.0%
! GATTTGGAACTTGAATGTGA+AGG - chr3.1:76211349-76211368 MS.gene049320:CDS 35.0%
! TGGCTTACTTTGTTGTGAAT+TGG - chr3.1:76210259-76210278 MS.gene049320:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG - chr3.1:76210842-76210861 MS.gene049320:intron 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG + chr3.1:76209870-76209889 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG + chr3.1:76210793-76210812 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr3.1:76210843-76210862 MS.gene049320:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr3.1:76210862-76210843 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - chr3.1:76210841-76210860 MS.gene049320:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr3.1:76210844-76210863 MS.gene049320:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + chr3.1:76210863-76210844 None:intergenic 35.0%
!!! AGTGTGGTTCTAATGTTTTC+TGG - chr3.1:76211386-76211405 MS.gene049320:CDS 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - chr3.1:76210777-76210796 MS.gene049320:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + chr3.1:76210796-76210777 None:intergenic 35.0%
AACGTTATGCAATTTCAGGG+GGG - chr3.1:76210537-76210556 MS.gene049320:intron 40.0%
AAGTTCCCTGAGAATTTCAC+TGG - chr3.1:76211177-76211196 MS.gene049320:CDS 40.0%
ACATAAGTGCAAAACGTCAG+GGG + chr3.1:76209980-76209999 None:intergenic 40.0%
ACTGAAAAATTTGACGGAGG+GGG - chr3.1:76210504-76210523 MS.gene049320:intron 40.0%
CACATAAGTGCAAAACGTCA+GGG + chr3.1:76209981-76210000 None:intergenic 40.0%
CCAAGATCTTGCTAAACAGA+AGG - chr3.1:76211203-76211222 MS.gene049320:CDS 40.0%
CCGGAAATGACCTATATTAC+AGG - chr3.1:76210928-76210947 MS.gene049320:intron 40.0%
CCTTCTGTTTAGCAAGATCT+TGG + chr3.1:76211206-76211225 None:intergenic 40.0%
GGAAAGGACAAATACAAGTG+TGG - chr3.1:76211370-76211389 MS.gene049320:CDS 40.0%
GGAACTTGAATGTGAAGGAA+AGG - chr3.1:76211354-76211373 MS.gene049320:CDS 40.0%
TGAAACAGCAGTGGTGAAAA+GGG + chr3.1:76209538-76209557 None:intergenic 40.0%
TTCATCAATAACGCCAGCAT+TGG + chr3.1:76209577-76209596 None:intergenic 40.0%
! AATCAAGAGCAAGTGATGGA+AGG - chr3.1:76209484-76209503 MS.gene049320:intron 40.0%
! ACTTGTTGAGCCTTGATCAA+TGG + chr3.1:76209444-76209463 None:intergenic 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG + chr3.1:76210794-76210813 None:intergenic 40.0%
AACGTTGTGCAATTTCACGG+AGG + chr3.1:76209898-76209917 None:intergenic 45.0%
ATTGAGCTCAGCACCAGATA+TGG + chr3.1:76209364-76209383 None:intergenic 45.0%
CATAAGTGCAAAACGTCAGG+GGG + chr3.1:76209979-76209998 None:intergenic 45.0%
CTGAAACAGCAGTGGTGAAA+AGG + chr3.1:76209539-76209558 None:intergenic 45.0%
GCACATAAGTGCAAAACGTC+AGG + chr3.1:76209982-76210001 None:intergenic 45.0%
GCTTGTAGCTATGCCATATC+TGG - chr3.1:76209348-76209367 MS.gene049320:CDS 45.0%
GGCAACCAGTGAAATTCTCA+GGG + chr3.1:76211185-76211204 None:intergenic 45.0%
TCATGAGGAATGAGTGTCTC+TGG - chr3.1:76210239-76210258 MS.gene049320:intron 45.0%
TCCAATTCTTCTGCCAATGC+TGG - chr3.1:76209561-76209580 MS.gene049320:CDS 45.0%
TGAAAAGAGCAAGGCCAACA+AGG - chr3.1:76209602-76209621 MS.gene049320:CDS 45.0%
TGGCAACCAGTGAAATTCTC+AGG + chr3.1:76211186-76211205 None:intergenic 45.0%
! GCTCTTGATTCTTTGGCTTC+AGG + chr3.1:76209474-76209493 None:intergenic 45.0%
! TCTTGCAAAGTTTGCTCCAC+TGG + chr3.1:76211130-76211149 None:intergenic 45.0%
!! AGCATTGGCAGAAGAATTGG+AGG + chr3.1:76209562-76209581 None:intergenic 45.0%
!!! TGTTGGCCTTGCTCTTTTCA+AGG + chr3.1:76209602-76209621 None:intergenic 45.0%
!! AATAAAAAAAAATATTTACA+TGG + chr3.1:76210736-76210755 None:intergenic 5.0%
!! ATAAAAAAAAATATTTACAT+GGG + chr3.1:76210735-76210754 None:intergenic 5.0%
!! TTGAAAAAATAAAATAAAAT+CGG + chr3.1:76210814-76210833 None:intergenic 5.0%
AGCTTGATACCTGAAACCCC+TGG + chr3.1:76209420-76209439 None:intergenic 50.0%
ATTGGAGGCTGAAACAGCAG+TGG + chr3.1:76209547-76209566 None:intergenic 50.0%
! TGCAAAGTTTGCTCCACTGG+TGG + chr3.1:76211127-76211146 None:intergenic 50.0%
!! GCCAGCATTGGCAGAAGAAT+TGG + chr3.1:76209565-76209584 None:intergenic 50.0%
! AAGAAGAGGCTAGCCACCAG+TGG - chr3.1:76211111-76211130 MS.gene049320:intron 55.0%
GCTGCATCACCAGGGGTTTC+AGG - chr3.1:76209408-76209427 MS.gene049320:intron 60.0%
TGCCCTCTGCTGCATCACCA+GGG - chr3.1:76209400-76209419 MS.gene049320:intron 60.0%
! AACCCCTGGTGATGCAGCAG+AGG + chr3.1:76209406-76209425 None:intergenic 60.0%
! ACCCCTGGTGATGCAGCAGA+GGG + chr3.1:76209405-76209424 None:intergenic 60.0%
GCCCTCTGCTGCATCACCAG+GGG - chr3.1:76209401-76209420 MS.gene049320:intron 65.0%
GTGCCCTCTGCTGCATCACC+AGG - chr3.1:76209399-76209418 MS.gene049320:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 76209321 76211417 76209321 ID=MS.gene049320
chr3.1 mRNA 76209321 76211417 76209321 ID=MS.gene049320.t1;Parent=MS.gene049320
chr3.1 exon 76211115 76211417 76211115 ID=MS.gene049320.t1.exon1;Parent=MS.gene049320.t1
chr3.1 CDS 76211115 76211417 76211115 ID=cds.MS.gene049320.t1;Parent=MS.gene049320.t1
chr3.1 exon 76209514 76209639 76209514 ID=MS.gene049320.t1.exon2;Parent=MS.gene049320.t1
chr3.1 CDS 76209514 76209639 76209514 ID=cds.MS.gene049320.t1;Parent=MS.gene049320.t1
chr3.1 exon 76209321 76209410 76209321 ID=MS.gene049320.t1.exon3;Parent=MS.gene049320.t1
chr3.1 CDS 76209321 76209410 76209321 ID=cds.MS.gene049320.t1;Parent=MS.gene049320.t1
Gene Sequence

>MS.gene049320

ATGGCTGCAATGAACTCAAGTGTATTAGCTTGTAGCTATGCCATATCTGGTGCTGAGCTCAATGCAAAGCTCATTTCAGTGCCCTCTGCTGCATCACCAGGGGTTTCAGGTATCAAGCTACCATTGATCAAGGCTCAACAAGTGAGAATTCCTGAAGCCAAAGAATCAAGAGCAAGTGATGGAAGGAGAAATGCTCTTGCTTTATTGGCTGCTACCCTTTTCACCACTGCTGTTTCAGCCTCCAATTCTTCTGCCAATGCTGGCGTTATTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGTACTTTTTTTAAATCTTTCTTCCCTTGTTAGAAGCTATTTTTTTTTTTTTACCAATTTTATCCTATAATAAGAAAATCTGCTATTTTTAAGCTTATGTAACGTGCTATCAGCTATAAACTCGTTTATCTGCTATCCGCTATAACTTGATTTGCTATCGGTTATATTACCAATCACATCCTTAATCAATTTATTATGGAGTAAATAGGTAATTACCCCCAAAATTGTAAGTTTCGTCAATTATCCCCCTGAAATTAACAAAACGTCAATTACCTCCGTGAAATTGCACAACGTTAATCAATTTACCCCCTCTGTCAAATTTTTCTGTTAGTCAACATGACGTTTTGCAAATACCCCCTGACGTTTTGCACTTATGTGCAAAATTCCCCCAAACTTAAAAATTTATGTTTTTTTCTTATCCTTGACTCAAAAGATATTAAAGACAAACAATTAACGGTTATCTTTACTATTTAAGGTTACAATAATAATATATCCTCTAAAAATAATGCAGAATTAATAACTTCATATTACTTTAGCAAAATTCATGTTTAGTTCAATTTTTAAGATAGAATAATTTTATTCAAACTTATATTAAGAAACTGTTAGAATTAATTGTTCATGAGGAATGAGTGTCTCTGGCTTACTTTGTTGTGAATTGGCGTGTCTCTATTTAAATAAGTCATAAGTTATGGAGAATTGAACAACCAAATGACATAACAAAAACAAAATAAAAGAACAGACCCATTTAAGAATGAAAGAGTCATATAAAGTATTAACGTTAACTGTTAATTGCTTGTCTTTAATATCTTTTAAGCTAAGGATAAGAAAAAAAATATAAATTTTCAAGTTCGGGGGGCATTTGCAAAACATCATGTTGACTAACTGAAAAATTTGACGGAGGGGGTAAATTGATTAACGTTATGCAATTTCAGGGGGGTAATTGACGTTTTATTAATTTCAGAGAGGTAATTGACGAAACTTACAATTTCATGGGGGTAATTGCCTATTTACTCATTTATTTTGTGTATGGATGTTTTAGAAATAGCCTTTTATATTGAATTTTGGGTTAATAGGTCTTTACCCTGTAATATAAGTCATTTCCGGTTTTCCCCATGTAAATATTTTTTTTTATTTACCCCCGTAAAAAAAAAATTGTTTTGATTTACCCCCTAATAGGCCAAACAAAAACCGATTTTATTTTATTTTTTCAAGAAATTTTCGTTTTTGTTTGGCCTATTAGGGGGTAAATCAAAACAAAAAATTTTACCGGGGGTAAATCAAAAAAAAATATTTACAGGGAAAAAACCGGAAATGACCTATATTACAGGAGGTAAAAACCTATTAACCCTTGAATTTTCTTAATTTTTAGCACCCTTGATAATATTATTTGTTCGGAGTATATTTGAAAGGAAAAAAATAATAAGATGCACTAAGGTACTAATGTAAGATTATTTTGACTGTATGTATATGGTGTAGGAATTGAATGACAAGAAGAGGCTAGCCACCAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTTGCTAAACAGAAGGTCTGACTCTAACCATAAACATCTTTTGTTTCACTAAATTGCTTTTCCAAAGTTTTCCTATTTACCATTTTCTAATGCTATTTTTTCCTTTTCATTTATGCAGAAAGTACCATTCATTACAGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA

Protein sequence

>MS.gene049320.t1

MAAMNSSVLACSYAISGAELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRASDGRRNALALLAATLFTTAVSASNSSANAGVIDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW