Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064029.t1 | XP_003620871.1 | 97.1 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 2.80E-130 | 474.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064029.t1 | Q9C5D7 | 62.8 | 223 | 83 | 0 | 15 | 237 | 9 | 231 | 7.8e-81 | 301.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064029.t1 | G7KJ71 | 97.1 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 2.0e-130 | 474.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene064029 | MS.gene26463 | PPI |
MS.gene064029 | MS.gene28756 | PPI |
MS.gene064029 | MS.gene059423 | PPI |
MS.gene028389 | MS.gene064029 | PPI |
MS.gene064029 | MS.gene053539 | PPI |
MS.gene064029 | MS.gene053535 | PPI |
MS.gene064029 | MS.gene35069 | PPI |
MS.gene064029 | MS.gene047856 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064029.t1 | MTR_6g091680 | 97.059 | 238 | 7 | 0 | 1 | 238 | 1 | 238 | 4.82e-171 | 470 |
MS.gene064029.t1 | MTR_8g021225 | 70.404 | 223 | 65 | 1 | 15 | 236 | 11 | 233 | 8.18e-114 | 325 |
MS.gene064029.t1 | MTR_8g101900 | 71.429 | 231 | 66 | 0 | 8 | 238 | 5 | 235 | 3.31e-109 | 314 |
MS.gene064029.t1 | MTR_4g085590 | 55.804 | 224 | 98 | 1 | 15 | 237 | 23 | 246 | 1.16e-90 | 267 |
MS.gene064029.t1 | MTR_4g094815 | 57.080 | 226 | 94 | 2 | 15 | 238 | 24 | 248 | 5.49e-90 | 266 |
MS.gene064029.t1 | MTR_4g094925 | 55.111 | 225 | 98 | 2 | 15 | 237 | 19 | 242 | 3.19e-86 | 256 |
MS.gene064029.t1 | MTR_4g094898 | 56.637 | 226 | 95 | 2 | 14 | 237 | 23 | 247 | 3.13e-81 | 243 |
MS.gene064029.t1 | MTR_4g094812 | 56.889 | 225 | 94 | 2 | 15 | 237 | 22 | 245 | 6.57e-81 | 243 |
MS.gene064029.t1 | MTR_4g094925 | 54.545 | 187 | 84 | 1 | 52 | 237 | 25 | 211 | 1.32e-72 | 220 |
MS.gene064029.t1 | MTR_4g094368 | 49.784 | 231 | 106 | 5 | 8 | 235 | 4 | 227 | 1.76e-72 | 221 |
MS.gene064029.t1 | MTR_4g094898 | 57.692 | 182 | 74 | 2 | 58 | 237 | 6 | 186 | 2.91e-65 | 201 |
MS.gene064029.t1 | MTR_2g070410 | 37.037 | 216 | 127 | 3 | 21 | 236 | 91 | 297 | 1.53e-46 | 156 |
MS.gene064029.t1 | MTR_2g070410 | 38.547 | 179 | 106 | 2 | 21 | 199 | 91 | 265 | 2.48e-36 | 129 |
MS.gene064029.t1 | MTR_6g091635 | 94.118 | 34 | 2 | 0 | 198 | 231 | 1 | 34 | 2.65e-16 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064029.t1 | AT4G26220 | 62.780 | 223 | 83 | 0 | 15 | 237 | 9 | 231 | 7.10e-104 | 300 |
MS.gene064029.t1 | AT4G34050 | 55.111 | 225 | 100 | 1 | 15 | 238 | 35 | 259 | 1.42e-91 | 270 |
MS.gene064029.t1 | AT4G34050 | 55.111 | 225 | 100 | 1 | 15 | 238 | 62 | 286 | 1.83e-91 | 271 |
MS.gene064029.t1 | AT1G67980 | 54.425 | 226 | 96 | 3 | 15 | 237 | 10 | 231 | 2.31e-84 | 251 |
MS.gene064029.t1 | AT1G24735 | 53.744 | 227 | 98 | 4 | 15 | 237 | 16 | 239 | 8.57e-81 | 242 |
MS.gene064029.t1 | AT1G67990 | 50.442 | 226 | 106 | 3 | 15 | 237 | 10 | 232 | 1.89e-74 | 226 |
MS.gene064029.t1 | AT1G24735 | 44.765 | 277 | 97 | 4 | 15 | 237 | 16 | 290 | 2.61e-74 | 227 |
MS.gene064029.t1 | AT1G24735 | 56.983 | 179 | 74 | 2 | 60 | 237 | 18 | 194 | 1.63e-70 | 214 |
MS.gene064029.t1 | AT1G67980 | 52.663 | 169 | 69 | 4 | 73 | 237 | 2 | 163 | 6.54e-53 | 169 |
MS.gene064029.t1 | AT3G62000 | 37.021 | 235 | 136 | 5 | 4 | 236 | 53 | 277 | 1.03e-47 | 159 |
MS.gene064029.t1 | AT3G61990 | 37.179 | 234 | 134 | 5 | 4 | 236 | 68 | 289 | 1.54e-45 | 154 |
MS.gene064029.t1 | AT3G62000 | 36.444 | 225 | 131 | 5 | 4 | 226 | 53 | 267 | 1.20e-40 | 142 |
MS.gene064029.t1 | AT4G34050 | 50.806 | 124 | 60 | 1 | 116 | 238 | 25 | 148 | 2.04e-39 | 134 |
Find 39 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCTCCAGCTCTACCAATTT+TGG | 0.186253 | 6.1:-79293918 | MS.gene064029:CDS |
GACAGGAAAACTTATGAAAT+TGG | 0.203207 | 6.1:-79293992 | MS.gene064029:CDS |
TCTAGCAGTTTATCCAAAAT+TGG | 0.261995 | 6.1:+79293905 | None:intergenic |
TCAAATGTTCCTTCATTTGT+AGG | 0.273170 | 6.1:+79293114 | None:intergenic |
AATGGTATTGCAGTATATAT+TGG | 0.318254 | 6.1:-79294741 | MS.gene064029:intron |
TTGAGAGGCTCAGGCTCTCT+AGG | 0.392368 | 6.1:+79294704 | None:intergenic |
CTCAGCTCTTTGAGAGGCTC+AGG | 0.393899 | 6.1:+79294695 | None:intergenic |
TGCACTGGAACATTCTCTTC+AGG | 0.394174 | 6.1:+79292967 | None:intergenic |
CCATGAAAGACTGATAAAAC+TGG | 0.437778 | 6.1:-79293049 | MS.gene064029:CDS |
GAATTTGCTCTCACTTCTGT+TGG | 0.447217 | 6.1:-79292880 | MS.gene064029:CDS |
TTATCCAAAATTGGTAGAGC+TGG | 0.462919 | 6.1:+79293914 | None:intergenic |
GCTCTCACTTCTGTTGGTGA+TGG | 0.468535 | 6.1:-79292874 | MS.gene064029:CDS |
ATGCAAACCTTTCCATCGTC+GGG | 0.470357 | 6.1:+79294116 | None:intergenic |
CTACCTGTCATAAGAAAGGC+TGG | 0.478364 | 6.1:-79293968 | MS.gene064029:CDS |
CTGATAAAACTGGTCAAAGT+TGG | 0.482685 | 6.1:-79293039 | MS.gene064029:CDS |
ATAGCAACTTTACCTGAGGC+TGG | 0.500969 | 6.1:-79294239 | MS.gene064029:CDS |
ACTCCAGCCTTTCTTATGAC+AGG | 0.521115 | 6.1:+79293965 | None:intergenic |
TCCTCACTCTGCAATATGAC+AGG | 0.523248 | 6.1:+79294859 | None:intergenic |
ATGACGCAGCCTACAAATGA+AGG | 0.525464 | 6.1:-79293123 | MS.gene064029:intron |
ATAAAACTGGTCAAAGTTGG+TGG | 0.527329 | 6.1:-79293036 | MS.gene064029:CDS |
TGGACTACCTGTCATAAGAA+AGG | 0.529586 | 6.1:-79293972 | MS.gene064029:CDS |
CGGGAATGTTGAGTGCAGTA+AGG | 0.537602 | 6.1:+79294135 | None:intergenic |
CTCTGTGGTCTAGAATGCAC+TGG | 0.539673 | 6.1:+79292952 | None:intergenic |
GTGATTAGTTGACCAGCCTC+AGG | 0.545407 | 6.1:+79294227 | None:intergenic |
GCATTCCTCAGCTCTTTGAG+AGG | 0.548288 | 6.1:+79294689 | None:intergenic |
TTACAGCCATAGATATTGAC+AGG | 0.548694 | 6.1:-79294009 | MS.gene064029:CDS |
TATGGGGTGGACGTGTTGCA+TGG | 0.558956 | 6.1:-79292990 | MS.gene064029:CDS |
TATGCAAACCTTTCCATCGT+CGG | 0.561122 | 6.1:+79294115 | None:intergenic |
TGAGAGGCTCAGGCTCTCTA+GGG | 0.570036 | 6.1:+79294705 | None:intergenic |
CAACATTCCCGACGATGGAA+AGG | 0.570116 | 6.1:-79294123 | MS.gene064029:intron |
TGTCATAAGAAAGGCTGGAG+TGG | 0.586841 | 6.1:-79293963 | MS.gene064029:CDS |
TCAATTGCTGCTAGTCTCTG+TGG | 0.590797 | 6.1:+79292937 | None:intergenic |
TCCTGTCATATTGCAGAGTG+AGG | 0.598598 | 6.1:-79294860 | MS.gene064029:CDS |
ATGCCACTGAGAATCATCCT+TGG | 0.600903 | 6.1:-79294670 | MS.gene064029:intron |
GCACTCAACATTCCCGACGA+TGG | 0.616697 | 6.1:-79294128 | MS.gene064029:CDS |
TTTCATAGCAACTTTACCTG+AGG | 0.618675 | 6.1:-79294243 | MS.gene064029:CDS |
CTGAGCCTCTCAAAGAGCTG+AGG | 0.634468 | 6.1:-79294694 | MS.gene064029:CDS |
GCAGAGTGAGGACTTAACAA+AGG | 0.657033 | 6.1:-79294848 | MS.gene064029:intron |
TTACCAAGGATGATTCTCAG+TGG | 0.746004 | 6.1:+79294667 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATATATGACAACATTTTAT+GGG | - | chr6.1:79294734-79294753 | MS.gene064029:intron | 15.0% |
!!! | TTATATATGACAACATTTTA+TGG | - | chr6.1:79294733-79294752 | MS.gene064029:intron | 15.0% |
!!! | TTTAATTTCGTAAACTAAAT+TGG | - | chr6.1:79294552-79294571 | MS.gene064029:intron | 15.0% |
!! | ACAATATCGAATTATATCTA+CGG | + | chr6.1:79293661-79293680 | None:intergenic | 20.0% |
!! | CATAGTAAGAAGAAATAAAA+GGG | + | chr6.1:79292950-79292969 | None:intergenic | 20.0% |
!! | CTTAAAATGGAAATAGATTT+AGG | + | chr6.1:79294073-79294092 | None:intergenic | 20.0% |
!! | CTTCAAGATTATGATTTAAT+TGG | - | chr6.1:79293152-79293171 | MS.gene064029:intron | 20.0% |
!!! | AATGATTTTTAATGTTACGT+AGG | + | chr6.1:79294523-79294542 | None:intergenic | 20.0% |
!!! | AATTTTTTCATACATGTCAT+AGG | + | chr6.1:79293962-79293981 | None:intergenic | 20.0% |
!!! | ATATATGACAACATTTTATG+GGG | - | chr6.1:79294735-79294754 | MS.gene064029:intron | 20.0% |
!!! | ATTTTTTGACAATTTTTGTG+TGG | - | chr6.1:79294589-79294608 | MS.gene064029:intron | 20.0% |
!!! | TATGTTATCAACAACTTTTA+GGG | + | chr6.1:79294130-79294149 | None:intergenic | 20.0% |
!!! | TTCTCTTTTTATTATCTGTT+TGG | - | chr6.1:79293876-79293895 | MS.gene064029:intron | 20.0% |
! | AAAACGTTAGTATATTGTGA+TGG | - | chr6.1:79293446-79293465 | MS.gene064029:intron | 25.0% |
! | AATGGTATTGCAGTATATAT+TGG | - | chr6.1:79293000-79293019 | MS.gene064029:CDS | 25.0% |
! | AGAAGATAGAATAATTACCA+AGG | + | chr6.1:79293091-79293110 | None:intergenic | 25.0% |
! | CTAGAAATGTGAACTTAAAA+TGG | + | chr6.1:79294086-79294105 | None:intergenic | 25.0% |
! | GCATAGTAAGAAGAAATAAA+AGG | + | chr6.1:79292951-79292970 | None:intergenic | 25.0% |
!! | GTATGTTATCAACAACTTTT+AGG | + | chr6.1:79294131-79294150 | None:intergenic | 25.0% |
!!! | ATACATTTCTAGTAGATCTT+CGG | - | chr6.1:79294147-79294166 | MS.gene064029:CDS | 25.0% |
!!! | CGTTTTAAAATTGAACAGAT+CGG | + | chr6.1:79293402-79293421 | None:intergenic | 25.0% |
!!! | TTGGTTTTCATATTCATTCA+GGG | - | chr6.1:79293474-79293493 | MS.gene064029:intron | 25.0% |
GACAGGAAAACTTATGAAAT+TGG | - | chr6.1:79293749-79293768 | MS.gene064029:intron | 30.0% | |
GTATATTGTGATGGTTAACT+TGG | - | chr6.1:79293455-79293474 | MS.gene064029:intron | 30.0% | |
TCAAATGTTCCTTCATTTGT+AGG | + | chr6.1:79294630-79294649 | None:intergenic | 30.0% | |
TCTAGCAGTTTATCCAAAAT+TGG | + | chr6.1:79293839-79293858 | None:intergenic | 30.0% | |
TTCGGTTAAGGTAATTAGTT+AGG | - | chr6.1:79294165-79294184 | MS.gene064029:CDS | 30.0% | |
! | AATGTTACGTAGGTTGAAAT+TGG | + | chr6.1:79294513-79294532 | None:intergenic | 30.0% |
! | ACAGGATTTTTGTAGATTGA+TGG | + | chr6.1:79292867-79292886 | None:intergenic | 30.0% |
! | AGTTTTCCTGTCAATATCTA+TGG | + | chr6.1:79293741-79293760 | None:intergenic | 30.0% |
! | TGGTTTTCATATTCATTCAG+GGG | - | chr6.1:79293475-79293494 | MS.gene064029:intron | 30.0% |
!! | CTTGGTTTTCATATTCATTC+AGG | - | chr6.1:79293473-79293492 | MS.gene064029:intron | 30.0% |
!! | TTCTGCAATGCTTTGAAATT+CGG | - | chr6.1:79293107-79293126 | MS.gene064029:CDS | 30.0% |
AAATAGAACGTTCAAGTGAG+CGG | - | chr6.1:79294334-79294353 | MS.gene064029:intron | 35.0% | |
AAATAGATTTAGGCCCTGTT+TGG | + | chr6.1:79294063-79294082 | None:intergenic | 35.0% | |
ACACAAGATTTATCGAGGTT+CGG | + | chr6.1:79294467-79294486 | None:intergenic | 35.0% | |
AGAAACTACCTCTAGTATTG+AGG | + | chr6.1:79293684-79293703 | None:intergenic | 35.0% | |
ATAAAACTGGTCAAAGTTGG+TGG | - | chr6.1:79294705-79294724 | MS.gene064029:CDS | 35.0% | |
ATCATGATGTTTGTCCAAAC+AGG | - | chr6.1:79294046-79294065 | MS.gene064029:intron | 35.0% | |
CAAAAAGACAATTGAAGTGG+GGG | - | chr6.1:79293561-79293580 | MS.gene064029:intron | 35.0% | |
CCAAAAAGACAATTGAAGTG+GGG | - | chr6.1:79293560-79293579 | MS.gene064029:intron | 35.0% | |
CCATGAAAGACTGATAAAAC+TGG | - | chr6.1:79294692-79294711 | MS.gene064029:CDS | 35.0% | |
CCCAAAAAGACAATTGAAGT+GGG | - | chr6.1:79293559-79293578 | MS.gene064029:intron | 35.0% | |
CGATTCAACCATAGTTTAAC+AGG | - | chr6.1:79293283-79293302 | MS.gene064029:intron | 35.0% | |
CTCACATAAGTGTTTATGCT+AGG | + | chr6.1:79293924-79293943 | None:intergenic | 35.0% | |
CTGATAAAACTGGTCAAAGT+TGG | - | chr6.1:79294702-79294721 | MS.gene064029:CDS | 35.0% | |
GATATTGTCCTCAATACTAG+AGG | - | chr6.1:79293673-79293692 | MS.gene064029:intron | 35.0% | |
GTTAAACTATGGTTGAATCG+TGG | + | chr6.1:79293283-79293302 | None:intergenic | 35.0% | |
TATCTGTCATCCAGTTTAAC+CGG | + | chr6.1:79293193-79293212 | None:intergenic | 35.0% | |
TCATGATGTTTGTCCAAACA+GGG | - | chr6.1:79294047-79294066 | MS.gene064029:intron | 35.0% | |
TCCCAAAAAGACAATTGAAG+TGG | - | chr6.1:79293558-79293577 | MS.gene064029:intron | 35.0% | |
TGATGACTCTTGATGAACAA+TGG | - | chr6.1:79292982-79293001 | MS.gene064029:CDS | 35.0% | |
TGTACACACAAGATTTATCG+AGG | + | chr6.1:79294472-79294491 | None:intergenic | 35.0% | |
TTACAGCCATAGATATTGAC+AGG | - | chr6.1:79293732-79293751 | MS.gene064029:intron | 35.0% | |
TTATCCAAAATTGGTAGAGC+TGG | + | chr6.1:79293830-79293849 | None:intergenic | 35.0% | |
TTCTAGTAGATCTTCGGTTA+AGG | - | chr6.1:79294153-79294172 | MS.gene064029:CDS | 35.0% | |
TTTCATAGCAACTTTACCTG+AGG | - | chr6.1:79293498-79293517 | MS.gene064029:intron | 35.0% | |
! | CCCACTTCAATTGTCTTTTT+GGG | + | chr6.1:79293562-79293581 | None:intergenic | 35.0% |
! | TATGACAACATTTTATGGGG+TGG | - | chr6.1:79294738-79294757 | MS.gene064029:intron | 35.0% |
! | TCTCATTCTCTCGTTTTACA+AGG | + | chr6.1:79294283-79294302 | None:intergenic | 35.0% |
!! | CCAGTTTTATCAGTCTTTCA+TGG | + | chr6.1:79294695-79294714 | None:intergenic | 35.0% |
AATAGAACGTTCAAGTGAGC+GGG | - | chr6.1:79294335-79294354 | MS.gene064029:intron | 40.0% | |
AGGTTCAACCCGATTCAATA+CGG | - | chr6.1:79293303-79293322 | MS.gene064029:intron | 40.0% | |
CTGGTTGAACCGTATTGAAT+CGG | + | chr6.1:79293315-79293334 | None:intergenic | 40.0% | |
GGGTTGAACCTGTTAAACTA+TGG | + | chr6.1:79293294-79293313 | None:intergenic | 40.0% | |
TATGCAAACCTTTCCATCGT+CGG | + | chr6.1:79293629-79293648 | None:intergenic | 40.0% | |
TGGACTACCTGTCATAAGAA+AGG | - | chr6.1:79293769-79293788 | MS.gene064029:intron | 40.0% | |
TGGTTGAACCGTATTGAATC+GGG | + | chr6.1:79293314-79293333 | None:intergenic | 40.0% | |
TTACCAAGGATGATTCTCAG+TGG | + | chr6.1:79293077-79293096 | None:intergenic | 40.0% | |
TTCTCTGTTGTATTGCAGTC+TGG | + | chr6.1:79293334-79293353 | None:intergenic | 40.0% | |
TTGGTTCAATCAGTTCACTC+CGG | - | chr6.1:79293171-79293190 | MS.gene064029:intron | 40.0% | |
! | CCCCACTTCAATTGTCTTTT+TGG | + | chr6.1:79293563-79293582 | None:intergenic | 40.0% |
! | GAATTTGCTCTCACTTCTGT+TGG | - | chr6.1:79294861-79294880 | MS.gene064029:CDS | 40.0% |
!! | AGCGTTTTGGACAAGTTAGT+CGG | - | chr6.1:79294195-79294214 | MS.gene064029:CDS | 40.0% |
!! | CATTTCTAGTAGCGAATCAC+TGG | - | chr6.1:79294097-79294116 | MS.gene064029:intron | 40.0% |
ACTCCAGCCTTTCTTATGAC+AGG | + | chr6.1:79293779-79293798 | None:intergenic | 45.0% | |
ACTTGTCCAAAACGCTGAAC+AGG | + | chr6.1:79294191-79294210 | None:intergenic | 45.0% | |
ATAGCAACTTTACCTGAGGC+TGG | - | chr6.1:79293502-79293521 | MS.gene064029:intron | 45.0% | |
ATGACGCAGCCTACAAATGA+AGG | - | chr6.1:79294618-79294637 | MS.gene064029:intron | 45.0% | |
ATGCAAACCTTTCCATCGTC+GGG | + | chr6.1:79293628-79293647 | None:intergenic | 45.0% | |
ATGCCACTGAGAATCATCCT+TGG | - | chr6.1:79293071-79293090 | MS.gene064029:CDS | 45.0% | |
CTACCTGTCATAAGAAAGGC+TGG | - | chr6.1:79293773-79293792 | MS.gene064029:intron | 45.0% | |
GAACAAACCAACTGACGAGT+TGG | - | chr6.1:79293351-79293370 | MS.gene064029:intron | 45.0% | |
GCAGAGTGAGGACTTAACAA+AGG | - | chr6.1:79292893-79292912 | MS.gene064029:CDS | 45.0% | |
TCAGTTCACTCCGGTTAAAC+TGG | - | chr6.1:79293180-79293199 | MS.gene064029:intron | 45.0% | |
TCCTCACTCTGCAATATGAC+AGG | + | chr6.1:79292885-79292904 | None:intergenic | 45.0% | |
TCCTGTCATATTGCAGAGTG+AGG | - | chr6.1:79292881-79292900 | MS.gene064029:CDS | 45.0% | |
TGCACTGGAACATTCTCTTC+AGG | + | chr6.1:79294777-79294796 | None:intergenic | 45.0% | |
TGTCATAAGAAAGGCTGGAG+TGG | - | chr6.1:79293778-79293797 | MS.gene064029:intron | 45.0% | |
! | GGACAAGTTAGTCGGTGTTT+CGG | - | chr6.1:79294203-79294222 | MS.gene064029:CDS | 45.0% |
! | GTCTCCAGCTCTACCAATTT+TGG | - | chr6.1:79293823-79293842 | MS.gene064029:intron | 45.0% |
! | TCAATTGCTGCTAGTCTCTG+TGG | + | chr6.1:79294807-79294826 | None:intergenic | 45.0% |
!! | AAACCAACTGACGAGTTGGT+CGG | - | chr6.1:79293355-79293374 | MS.gene064029:intron | 45.0% |
!! | ATTGAAGTGGGGGTGTTTAC+TGG | - | chr6.1:79293571-79293590 | MS.gene064029:intron | 45.0% |
ATCAACCTCGACGAGGATGT+AGG | - | chr6.1:79294428-79294447 | MS.gene064029:intron | 50.0% | |
CAACATTCCCGACGATGGAA+AGG | - | chr6.1:79293618-79293637 | MS.gene064029:intron | 50.0% | |
CGGGAATGTTGAGTGCAGTA+AGG | + | chr6.1:79293609-79293628 | None:intergenic | 50.0% | |
GCATTCCTCAGCTCTTTGAG+AGG | + | chr6.1:79293055-79293074 | None:intergenic | 50.0% | |
TGAATCCTACATCCTCGTCG+AGG | + | chr6.1:79294436-79294455 | None:intergenic | 50.0% | |
! | CTCTGTGGTCTAGAATGCAC+TGG | + | chr6.1:79294792-79294811 | None:intergenic | 50.0% |
! | GCTCTCACTTCTGTTGGTGA+TGG | - | chr6.1:79294867-79294886 | MS.gene064029:CDS | 50.0% |
! | GTGATTAGTTGACCAGCCTC+AGG | + | chr6.1:79293517-79293536 | None:intergenic | 50.0% |
! | GTTAGGCCTGTTCAGCGTTT+TGG | - | chr6.1:79294182-79294201 | MS.gene064029:CDS | 50.0% |
! | TGGTCGGTTCTCTGTTCAAC+TGG | - | chr6.1:79293371-79293390 | MS.gene064029:intron | 50.0% |
CTGAGCCTCTCAAAGAGCTG+AGG | - | chr6.1:79293047-79293066 | MS.gene064029:CDS | 55.0% | |
GAACCGACCAACTCGTCAGT+TGG | + | chr6.1:79293361-79293380 | None:intergenic | 55.0% | |
GCACTCAACATTCCCGACGA+TGG | - | chr6.1:79293613-79293632 | MS.gene064029:intron | 55.0% | |
TATGGGGTGGACGTGTTGCA+TGG | - | chr6.1:79294751-79294770 | MS.gene064029:intron | 55.0% | |
TGAGAGGCTCAGGCTCTCTA+GGG | + | chr6.1:79293039-79293058 | None:intergenic | 55.0% | |
TGCTGAGATCAACCTCGACG+AGG | - | chr6.1:79294421-79294440 | MS.gene064029:intron | 55.0% | |
TTGAGAGGCTCAGGCTCTCT+AGG | + | chr6.1:79293040-79293059 | None:intergenic | 55.0% | |
! | CTCAGCTCTTTGAGAGGCTC+AGG | + | chr6.1:79293049-79293068 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 79292846 | 79294917 | 79292846 | ID=MS.gene064029 |
chr6.1 | mRNA | 79292846 | 79294917 | 79292846 | ID=MS.gene064029.t1;Parent=MS.gene064029 |
chr6.1 | exon | 79294849 | 79294917 | 79294849 | ID=MS.gene064029.t1.exon1;Parent=MS.gene064029.t1 |
chr6.1 | CDS | 79294849 | 79294917 | 79294849 | ID=cds.MS.gene064029.t1;Parent=MS.gene064029.t1 |
chr6.1 | exon | 79294671 | 79294750 | 79294671 | ID=MS.gene064029.t1.exon2;Parent=MS.gene064029.t1 |
chr6.1 | CDS | 79294671 | 79294750 | 79294671 | ID=cds.MS.gene064029.t1;Parent=MS.gene064029.t1 |
chr6.1 | exon | 79294124 | 79294268 | 79294124 | ID=MS.gene064029.t1.exon3;Parent=MS.gene064029.t1 |
chr6.1 | CDS | 79294124 | 79294268 | 79294124 | ID=cds.MS.gene064029.t1;Parent=MS.gene064029.t1 |
chr6.1 | exon | 79293901 | 79294032 | 79293901 | ID=MS.gene064029.t1.exon4;Parent=MS.gene064029.t1 |
chr6.1 | CDS | 79293901 | 79294032 | 79293901 | ID=cds.MS.gene064029.t1;Parent=MS.gene064029.t1 |
chr6.1 | exon | 79292846 | 79293136 | 79292846 | ID=MS.gene064029.t1.exon5;Parent=MS.gene064029.t1 |
chr6.1 | CDS | 79292846 | 79293136 | 79292846 | ID=cds.MS.gene064029.t1;Parent=MS.gene064029.t1 |
Gene Sequence |
Protein sequence |