AlfalfaGEDB | MS.gene064038

M. sativa cultivar XinJiangDaYe / MS.gene064038

KEGG: K11434
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064038.t1	XP_003620880.2	100	148	0	0	1	148	236	383	6.90E-79	303.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064038.t1	A2Z0C0	80.4	148	29	0	1	148	240	387	1.2e-66	253.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064038.t1	G7KJ80	100.0	148	0	0	1	148	236	383	5.0e-79	303.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05188	MS.gene064038	0.832104	1.14E-55	-1.69E-46
MS.gene051975	MS.gene064038	0.807459	5.00E-50	-1.69E-46
MS.gene052717	MS.gene064038	0.807345	5.29E-50	-1.69E-46
MS.gene053963	MS.gene064038	0.800559	1.36E-48	-1.69E-46
MS.gene055603	MS.gene064038	0.803316	3.69E-49	-1.69E-46
MS.gene055808	MS.gene064038	0.815687	8.14E-52	-1.69E-46
MS.gene056091	MS.gene064038	0.816182	6.31E-52	-1.69E-46
MS.gene056403	MS.gene064038	0.852479	4.49E-61	-1.69E-46
MS.gene056605	MS.gene064038	0.857378	1.70E-62	-1.69E-46
MS.gene05689	MS.gene064038	0.820879	5.43E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064038.t1	MTR_6g091770	100.000	148	0	0	1	148	236	383	3.66e-109	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064038.t1	AT4G29510	80.405	148	29	0	1	148	243	390	2.61e-89	265
MS.gene064038.t1	AT2G19670	78.378	148	32	0	1	148	219	366	3.11e-85	254

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Find 0 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGAAAATTGGGGAG+GGG	+	42523:1034-1053	MS.gene064038:intron	30.0%
ATGCTCAAGTATTCATTGAA+TGG	+	42523:1557-1576	MS.gene064038:CDS	30.0%
CCACAAAAACTAAAGTAGAA+AGG	-	42523:926-945	None:intergenic	30.0%
GACATAATTCAAAACCCATT+TGG	-	42523:1107-1126	None:intergenic	30.0%
GGGATTATTATCAATTAGTG+TGG	+	42523:1056-1075	MS.gene064038:intron	30.0%
TGTATGAAACATACAATGCA+AGG	-	42523:643-662	None:intergenic	30.0%
TTAACTGAACTGAAAAGAAC+TGG	+	42523:1198-1217	MS.gene064038:intron	30.0%
AAAAAAGAAAATTGGGGAGG+GGG	+	42523:1035-1054	MS.gene064038:intron	35.0%
CCCAAATAAAAAGAATCCTC+GGG	+	42523:1523-1542	MS.gene064038:CDS	35.0%
CCCCAAATAAAAAGAATCCT+CGG	+	42523:1522-1541	MS.gene064038:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
42523	gene	507	1625	507	ID=MS.gene064038
42523	mRNA	507	1625	507	ID=MS.gene064038.t1;Parent=MS.gene064038
42523	exon	507	596	507	ID=MS.gene064038.t1.exon1;Parent=MS.gene064038.t1
42523	CDS	507	596	507	ID=cds.MS.gene064038.t1;Parent=MS.gene064038.t1
42523	exon	765	915	765	ID=MS.gene064038.t1.exon2;Parent=MS.gene064038.t1
42523	CDS	765	915	765	ID=cds.MS.gene064038.t1;Parent=MS.gene064038.t1
42523	exon	1420	1625	1420	ID=MS.gene064038.t1.exon3;Parent=MS.gene064038.t1
42523	CDS	1420	1625	1420	ID=cds.MS.gene064038.t1;Parent=MS.gene064038.t1

Gene Sequence

>MS.gene064038

ATGAGCTGCATCAAGAAGCAAGCCTTGATGGAGCCTCTTGTTGACACAGTTGACCAGAATCAGATCGCAACGAACTGTCAGCTACTCAAGGTCGGTAATATCCAGTTCTGATGATGCTTTTATGTTTAATGTACCTTGCATTGTATGTTTCATACAACAATGTCTACAATGATGAAATTTTTCTTTTCATTTGGTGCAATAGTTTCTTGTTAGAATGCAAAGATTTGTATTTGTGCTGACTTGTTCATCTTTGTTCAGTCCATGGACATCTCAAAAATGTCTTCTGGAGACTGTTCATTCACAGCGCCTTTTAAGCTTGTTGCTGCTCGTGACGATTTCATTCATGCTTTTGTTGCATATTTTGATGTATCATTTACAAAGTGTCATAAATTGATGGGCTTCTCAACAGGTTAGTTCCTTTCTACTTTAGTTTTTGTGGTCTGCTTTGTCAATAGGAAGGATGAACATTGAAGTCTGTTTATTGATTCTTTCTAATAATTTGCATGTAGAAGTACGATCATATTCTTAAAAAAAGAAAATTGGGGAGGGGGGATTATTATCAATTAGTGTGGCACTAACGACAATTTTAAAACTGTTCCAAATGGGTTTTGAATTATGTCACTTGAGGTTATAAAGTCAAACTCGTACCATTGAGCTGACACATCATGTGCAAATATGATGATATTTGCTTTTAACTGAACTGAAAAGAACTGGTATTGCTTCTGAAACTATGTTTGCATGTATTTTTTCTGAAAATCGGTTGCTGAAAACTTGTACACAAGAGTTCTTTCAACAGTCTTCCCATTTGTGGTTCCGTCTTTGTTATAATATCATTTTAGTGGCGAGTGTGGATTCATTTTTATCATTTTAGTGGCGAGTGTGGATTCATTTTTGTGTACATATATATTTCCAGGGCCAAGATCGCGGAGTACACATTGGAAACAAACAGTCCTATATCTGGAAGATGTCTTGACCATTTGTGAGGGGGAGACAATTGTAGGGAGCATGACTGTGGCCCCAAATAAAAAGAATCCTCGGGATGTTGATATAATGCTCAAGTATTCATTGAATGGCAGGCGATGCAATGCTTCGAGGGTTCAGTATTACAAGATGCGTTGA

Protein sequence

>MS.gene064038.t1

MSCIKKQALMEPLVDTVDQNQIATNCQLLKSMDISKMSSGDCSFTAPFKLVAARDDFIHAFVAYFDVSFTKCHKLMGFSTGPRSRSTHWKQTVLYLEDVLTICEGETIVGSMTVAPNKKNPRDVDIMLKYSLNGRRCNASRVQYYKMR