Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064080.t1 | XP_013453257.1 | 88.2 | 585 | 34 | 4 | 1 | 552 | 215 | 797 | 2.40E-281 | 977.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064080.t1 | F4IK92 | 37.4 | 597 | 309 | 15 | 1 | 553 | 229 | 804 | 1.3e-81 | 305.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064080.t1 | A0A072UCF1 | 88.2 | 585 | 34 | 4 | 1 | 552 | 58 | 640 | 1.7e-281 | 977.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene064080 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene049418 | MS.gene064080 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene064080 | 0.84853 | 5.78E-60 | -1.69E-46 |
| MS.gene050297 | MS.gene064080 | 0.862747 | 4.07E-64 | -1.69E-46 |
| MS.gene050648 | MS.gene064080 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene051094 | MS.gene064080 | 0.810174 | 1.31E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene064080 | 0.839193 | 1.83E-57 | -1.69E-46 |
| MS.gene051478 | MS.gene064080 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene051629 | MS.gene064080 | 0.810863 | 9.33E-51 | -1.69E-46 |
| MS.gene052731 | MS.gene064080 | 0.8128 | 3.53E-51 | -1.69E-46 |
| MS.gene055957 | MS.gene064080 | 0.841047 | 6.02E-58 | -1.69E-46 |
| MS.gene056042 | MS.gene064080 | 0.813476 | 2.51E-51 | -1.69E-46 |
| MS.gene056169 | MS.gene064080 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene056228 | MS.gene064080 | 0.814841 | 1.25E-51 | -1.69E-46 |
| MS.gene056335 | MS.gene064080 | 0.801988 | 6.94E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene064080 | 0.817075 | 3.98E-52 | -1.69E-46 |
| MS.gene058197 | MS.gene064080 | 0.842241 | 2.92E-58 | -1.69E-46 |
| MS.gene058198 | MS.gene064080 | 0.842473 | 2.53E-58 | -1.69E-46 |
| MS.gene059300 | MS.gene064080 | 0.847263 | 1.29E-59 | -1.69E-46 |
| MS.gene060565 | MS.gene064080 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene064080 | 0.846701 | 1.84E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 122 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGATCCTGCATCTTTA+TGG | 0.153457 | 6.4:-63731626 | None:intergenic |
| AAATTATCCTCTCTGACTTT+TGG | 0.155108 | 6.4:-63732513 | None:intergenic |
| TTGGCTCTGCCTCACAAATT+TGG | 0.181166 | 6.4:-63732301 | None:intergenic |
| CACAACATTGATGTGTAATT+TGG | 0.196160 | 6.4:-63731681 | None:intergenic |
| ATGGATAAACTTTCTATAAC+TGG | 0.262628 | 6.4:-63732774 | None:intergenic |
| TCCTGGGAGAAGCGACATTT+TGG | 0.275170 | 6.4:-63732320 | None:intergenic |
| GGTGAAAAGTAGTGAAAGTT+TGG | 0.278968 | 6.4:+63732404 | MS.gene064080:CDS |
| CAGGATGTGGGTTATGAATA+TGG | 0.288308 | 6.4:+63731449 | MS.gene064080:CDS |
| TTATCTCAAGAATCTTTAAA+AGG | 0.289916 | 6.4:+63732252 | MS.gene064080:CDS |
| TAAATATTGGAAAATGCTTC+CGG | 0.292412 | 6.4:+63730807 | MS.gene064080:CDS |
| ACAACATTGATGTGTAATTT+GGG | 0.297728 | 6.4:-63731680 | None:intergenic |
| TACTCTCAAACTCTTCATTA+TGG | 0.299131 | 6.4:-63731376 | None:intergenic |
| CTGCTGCAGCCATGGGATTA+TGG | 0.311128 | 6.4:-63732862 | None:intergenic |
| CACTTTAGCACCGTATCTTC+TGG | 0.313958 | 6.4:+63732821 | MS.gene064080:CDS |
| AACGGTTTGCTTCTCACATT+TGG | 0.314748 | 6.4:-63731568 | None:intergenic |
| AGATCTAAACTCTGCATATA+TGG | 0.315587 | 6.4:+63732695 | MS.gene064080:CDS |
| AACGTGCCAATCATCTCTTT+TGG | 0.320011 | 6.4:-63731315 | None:intergenic |
| ATTGAAAGAGCAATGCAATT+TGG | 0.320218 | 6.4:-63733313 | None:intergenic |
| TGTGAGAAGCAAACCGTTAG+AGG | 0.344735 | 6.4:+63731573 | MS.gene064080:CDS |
| CTAGTTTCTGAAGATGGCTT+TGG | 0.352507 | 6.4:-63732357 | None:intergenic |
| CCAAGCCTACCATTCTTGAT+TGG | 0.357127 | 6.4:-63732212 | None:intergenic |
| ACTACCGAGCCTTCAGAAAC+TGG | 0.367334 | 6.4:+63730838 | MS.gene064080:CDS |
| AAACATGATGCATCAGTTAC+AGG | 0.369760 | 6.4:+63731768 | MS.gene064080:CDS |
| TTCCACTACAGAATGTGTTC+TGG | 0.378816 | 6.4:-63731351 | None:intergenic |
| AGGATAATTTGAACTGCTTA+GGG | 0.382496 | 6.4:+63732526 | MS.gene064080:CDS |
| GAGGATAATTTGAACTGCTT+AGG | 0.390712 | 6.4:+63732525 | MS.gene064080:CDS |
| ACCATTTCTAGCATTGGTTC+TGG | 0.391155 | 6.4:-63732613 | None:intergenic |
| TTAGTACTAGTTTCTGAAGA+TGG | 0.408101 | 6.4:-63732363 | None:intergenic |
| TGGAGTGCATACGGAGATCC+TGG | 0.410874 | 6.4:-63732337 | None:intergenic |
| CCAGTAGTTTGTGTTACTCT+CGG | 0.422069 | 6.4:-63732643 | None:intergenic |
| CAAATGAAATGACTTGTATT+CGG | 0.426495 | 6.4:+63731713 | MS.gene064080:CDS |
| TTCAGATATTGAAATCAAAC+AGG | 0.427865 | 6.4:+63731744 | MS.gene064080:CDS |
| TTGCTTCTCACATTTGGCTT+CGG | 0.433575 | 6.4:-63731562 | None:intergenic |
| AAATATTGGAAAATGCTTCC+GGG | 0.434596 | 6.4:+63730808 | MS.gene064080:CDS |
| GAGCCTAACATCTCTATGTC+TGG | 0.437595 | 6.4:-63731204 | None:intergenic |
| TATATGGAAGCTTTGTGTTC+CGG | 0.441349 | 6.4:+63732711 | MS.gene064080:CDS |
| TTCTTGATTGGATTGTAGAA+AGG | 0.451684 | 6.4:-63732200 | None:intergenic |
| AGGGTTTGAAAGATACGGAT+TGG | 0.465253 | 6.4:+63730529 | MS.gene064080:CDS |
| CAGTAGTTTGTGTTACTCTC+GGG | 0.467032 | 6.4:-63732642 | None:intergenic |
| TCCACTACAGAATGTGTTCT+GGG | 0.471821 | 6.4:-63731350 | None:intergenic |
| TAGAGAGGGTTTGAAAGATA+CGG | 0.472957 | 6.4:+63730524 | MS.gene064080:CDS |
| AAAGCGGCTTCTGTTGCGTT+GGG | 0.473923 | 6.4:+63730561 | MS.gene064080:CDS |
| GAGCAAAGGTAAACCTTTGA+AGG | 0.475464 | 6.4:-63730866 | None:intergenic |
| TCTTGATTGGATTGTAGAAA+GGG | 0.477546 | 6.4:-63732199 | None:intergenic |
| AACTTGCCTGCTGCAGCCAT+GGG | 0.477757 | 6.4:-63732869 | None:intergenic |
| AGGACAACCATTTCTAGCAT+TGG | 0.479539 | 6.4:-63732619 | None:intergenic |
| GAAACTGGATCCTCCTTCAA+AGG | 0.479927 | 6.4:+63730853 | MS.gene064080:CDS |
| GAAACTAGTACTAAGCAATC+AGG | 0.487912 | 6.4:+63732372 | MS.gene064080:CDS |
| ACATCAATGTTGTGTACAAA+GGG | 0.488994 | 6.4:+63731690 | MS.gene064080:CDS |
| GAACTTGCCTGCTGCAGCCA+TGG | 0.490305 | 6.4:-63732870 | None:intergenic |
| ACTTAATATGAAATCAACTA+CGG | 0.491293 | 6.4:+63731232 | MS.gene064080:CDS |
| AGTCCAGACATAGAGATGTT+AGG | 0.496261 | 6.4:+63731201 | MS.gene064080:CDS |
| CCAATCAAGAATGGTAGGCT+TGG | 0.497219 | 6.4:+63732212 | MS.gene064080:CDS |
| TAAAGCGGCTTCTGTTGCGT+TGG | 0.497925 | 6.4:+63730560 | MS.gene064080:CDS |
| TAAACTTTCTATAACTGGAC+CGG | 0.499508 | 6.4:-63732769 | None:intergenic |
| GCCAAAATGTCGCTTCTCCC+AGG | 0.502514 | 6.4:+63732319 | MS.gene064080:CDS |
| GTCATCCCAAAAGAGATGAT+TGG | 0.502641 | 6.4:+63731309 | MS.gene064080:CDS |
| CATAATCCCATGGCTGCAGC+AGG | 0.504288 | 6.4:+63732863 | MS.gene064080:CDS |
| AAAGCATGTCAAAATGATGT+TGG | 0.506304 | 6.4:+63731278 | MS.gene064080:CDS |
| TCTGCTCAAGTGAGAAAGAA+TGG | 0.511359 | 6.4:+63732570 | MS.gene064080:CDS |
| CCGAGAGTAACACAAACTAC+TGG | 0.513150 | 6.4:+63732643 | MS.gene064080:CDS |
| GTTGAGCTTCTGAATAAAAC+CGG | 0.517186 | 6.4:+63732750 | MS.gene064080:CDS |
| ACTCATTGTTTGTAGCGGCT+TGG | 0.517709 | 6.4:-63731408 | None:intergenic |
| TGTAAAACCGCATCCCTCAC+TGG | 0.518045 | 6.4:-63730778 | None:intergenic |
| GCCAGAACCAATGCTAGAAA+TGG | 0.519664 | 6.4:+63732612 | MS.gene064080:CDS |
| CAACTTATTACTTCCTCTAA+CGG | 0.520424 | 6.4:-63731586 | None:intergenic |
| CACATCAATGTTGTGTACAA+AGG | 0.523686 | 6.4:+63731689 | MS.gene064080:CDS |
| TTCTACAATCCAATCAAGAA+TGG | 0.529982 | 6.4:+63732203 | MS.gene064080:CDS |
| CATTGTTTACAAAGCAGTCA+TGG | 0.533486 | 6.4:-63731534 | None:intergenic |
| CATGACTGCTTTGTAAACAA+TGG | 0.533703 | 6.4:+63731535 | MS.gene064080:CDS |
| TGTTACAAGCATGCAGGATG+TGG | 0.535835 | 6.4:+63731436 | MS.gene064080:CDS |
| AATGTACTCCATAAAGATGC+AGG | 0.536807 | 6.4:+63731618 | MS.gene064080:CDS |
| AAGGAGGATCCAGTTTCTGA+AGG | 0.539883 | 6.4:-63730847 | None:intergenic |
| TGTAATTTGGGGACTTGACT+CGG | 0.540972 | 6.4:-63731668 | None:intergenic |
| CTCCAGCATGAATCCTCGGT+TGG | 0.542014 | 6.4:-63732449 | None:intergenic |
| TGGGCCTATGGATGACAAGC+AGG | 0.545178 | 6.4:+63731469 | MS.gene064080:CDS |
| AACATCTCTATGTCTGGACT+CGG | 0.546866 | 6.4:-63731198 | None:intergenic |
| AGATGGCTTTGGAGTGCATA+CGG | 0.548202 | 6.4:-63732346 | None:intergenic |
| GGGTTATGAATATGGGCCTA+TGG | 0.549080 | 6.4:+63731457 | MS.gene064080:CDS |
| CTTAATATGAAATCAACTAC+GGG | 0.555405 | 6.4:+63731233 | MS.gene064080:CDS |
| CTATCTCCAGCATGAATCCT+CGG | 0.562259 | 6.4:-63732453 | None:intergenic |
| TCTCAAGAATCTTTAAAAGG+AGG | 0.564666 | 6.4:+63732255 | MS.gene064080:CDS |
| AGCATTGGTTCTGGCAGCAG+AGG | 0.565867 | 6.4:-63732604 | None:intergenic |
| CAGAAAACTCCAAATTTGTG+AGG | 0.569734 | 6.4:+63732292 | MS.gene064080:CDS |
| ACAATCCAATCAAGAATGGT+AGG | 0.573841 | 6.4:+63732207 | MS.gene064080:CDS |
| AGGATGTGGGTTATGAATAT+GGG | 0.575148 | 6.4:+63731450 | MS.gene064080:CDS |
| GGCTGTTGGTAGTATTAGAG+AGG | 0.583720 | 6.4:+63730509 | MS.gene064080:CDS |
| AGCCAACCGAGGATTCATGC+TGG | 0.584954 | 6.4:+63732447 | MS.gene064080:CDS |
| GGATCCAGTTTCTGAAGGCT+CGG | 0.586766 | 6.4:-63730842 | None:intergenic |
| TTTCAGCCATGCAGAAAAGA+GGG | 0.590773 | 6.4:+63733390 | MS.gene064080:CDS |
| TCAAGACTCATTGTTTGTAG+CGG | 0.603027 | 6.4:-63731413 | None:intergenic |
| ATCTCTATGTCTGGACTCGG+TGG | 0.603533 | 6.4:-63731195 | None:intergenic |
| AACGAGAATAAGTTCGTCAC+CGG | 0.604731 | 6.4:-63732730 | None:intergenic |
| GGAGTGCATACGGAGATCCT+GGG | 0.608022 | 6.4:-63732336 | None:intergenic |
| CCCCAGAACACATTCTGTAG+TGG | 0.608984 | 6.4:+63731349 | MS.gene064080:CDS |
| CAACATTGATGTGTAATTTG+GGG | 0.611777 | 6.4:-63731679 | None:intergenic |
| AATGCAATTTGGTCCGTGGA+CGG | 0.613979 | 6.4:-63733302 | None:intergenic |
| TTAGCACCGTATCTTCTGGA+AGG | 0.614062 | 6.4:+63732825 | MS.gene064080:CDS |
| GGTGAAACCAGTGAGGGATG+CGG | 0.615202 | 6.4:+63730771 | MS.gene064080:intron |
| GGATAATTTGAACTGCTTAG+GGG | 0.616156 | 6.4:+63732527 | MS.gene064080:CDS |
| GATTCATGCTGGAGATAGTG+TGG | 0.617649 | 6.4:+63732458 | MS.gene064080:CDS |
| TAATTTGAACTGCTTAGGGG+AGG | 0.618224 | 6.4:+63732530 | MS.gene064080:CDS |
| GTTGAAATGAGCACCGTCCA+CGG | 0.618871 | 6.4:+63733289 | MS.gene064080:CDS |
| GAGCAATGCAATTTGGTCCG+TGG | 0.621953 | 6.4:-63733306 | None:intergenic |
| GGATATGTGTAAAAGTTACA+AGG | 0.626865 | 6.4:+63732479 | MS.gene064080:CDS |
| ATATGAAATCAACTACGGGA+AGG | 0.627700 | 6.4:+63731237 | MS.gene064080:CDS |
| GCTGTTGGTAGTATTAGAGA+GGG | 0.629368 | 6.4:+63730510 | MS.gene064080:CDS |
| GGCTCGGTAGTATAATGACC+CGG | 0.630775 | 6.4:-63730826 | None:intergenic |
| CACTCCTGCTTGTCATCCAT+AGG | 0.633163 | 6.4:-63731473 | None:intergenic |
| TCTTGATGTTACAAGCATGC+AGG | 0.641520 | 6.4:+63731430 | MS.gene064080:CDS |
| TAGTTTGTGTTACTCTCGGG+AGG | 0.642716 | 6.4:-63732639 | None:intergenic |
| GGATTGGAAAACACGTAAAG+CGG | 0.647564 | 6.4:+63730545 | MS.gene064080:CDS |
| ATTATAGGTGAAACCAGTGA+GGG | 0.652743 | 6.4:+63730765 | MS.gene064080:intron |
| CAAAGGTAAACCTTTGAAGG+AGG | 0.653235 | 6.4:-63730863 | None:intergenic |
| TCTACAGAAAATATCTGCGG+AGG | 0.664334 | 6.4:+63731140 | MS.gene064080:intron |
| GTTACAAGCATGCAGGATGT+GGG | 0.676382 | 6.4:+63731437 | MS.gene064080:CDS |
| TATCTGCGGAGGTGACTCTG+TGG | 0.685008 | 6.4:+63731151 | MS.gene064080:CDS |
| CTTTCTACAGAAAATATCTG+CGG | 0.688105 | 6.4:+63731137 | MS.gene064080:intron |
| GACTGCCCCAAAAGTCAGAG+AGG | 0.694271 | 6.4:+63732506 | MS.gene064080:CDS |
| GATTATAGGTGAAACCAGTG+AGG | 0.696142 | 6.4:+63730764 | MS.gene064080:intron |
| CCACTACAGAATGTGTTCTG+GGG | 0.711381 | 6.4:-63731349 | None:intergenic |
| GTGAATCGTCTTGTATGTGA+AGG | 0.716670 | 6.4:+63732672 | MS.gene064080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAAATAACTAATTA+AGG | + | chr6.4:63732949-63732968 | MS.gene064080:intron | 10.0% |
| !! | ATATATTAATAATCGATTAT+AGG | + | chr6.4:63730750-63730769 | MS.gene064080:intron | 10.0% |
| !! | TACACTTATAATTTAGTTAA+CGG | - | chr6.4:63730731-63730750 | None:intergenic | 15.0% |
| !!! | AATATGAATATTGTAACTTT+TGG | + | chr6.4:63732046-63732065 | MS.gene064080:intron | 15.0% |
| !!! | TAATTTTTATTTTCTTCTGA+TGG | + | chr6.4:63733071-63733090 | MS.gene064080:intron | 15.0% |
| !!! | TTGATTTCATATTAAGTTTT+TGG | - | chr6.4:63731229-63731248 | None:intergenic | 15.0% |
| !! | ACTTAATATGAAATCAACTA+CGG | + | chr6.4:63731232-63731251 | MS.gene064080:CDS | 20.0% |
| !! | AGGATATATATAAAGACATT+TGG | + | chr6.4:63730939-63730958 | MS.gene064080:intron | 20.0% |
| !! | GATATCAAAATTCAAAAAGA+GGG | - | chr6.4:63730897-63730916 | None:intergenic | 20.0% |
| !! | TGATATCAAAATTCAAAAAG+AGG | - | chr6.4:63730898-63730917 | None:intergenic | 20.0% |
| !! | TTATCTCAAGAATCTTTAAA+AGG | + | chr6.4:63732252-63732271 | MS.gene064080:CDS | 20.0% |
| !! | TTTGATATCAATATTGCTAT+TGG | + | chr6.4:63730908-63730927 | MS.gene064080:intron | 20.0% |
| !!! | TTTTACAAGCTCTTAAATAT+TGG | + | chr6.4:63730794-63730813 | MS.gene064080:CDS | 20.0% |
| ! | AAACAAGAACACTATCTAAT+TGG | - | chr6.4:63730979-63730998 | None:intergenic | 25.0% |
| ! | AACAAGAACACTATCTAATT+GGG | - | chr6.4:63730978-63730997 | None:intergenic | 25.0% |
| ! | ACAACATTGATGTGTAATTT+GGG | - | chr6.4:63731683-63731702 | None:intergenic | 25.0% |
| ! | ATAAATGAGCTACTGTATAT+CGG | - | chr6.4:63731869-63731888 | None:intergenic | 25.0% |
| ! | ATGGATAAACTTTCTATAAC+TGG | - | chr6.4:63732777-63732796 | None:intergenic | 25.0% |
| ! | CTTAATATGAAATCAACTAC+GGG | + | chr6.4:63731233-63731252 | MS.gene064080:CDS | 25.0% |
| ! | GTTAAACAATTTAATAACCC+AGG | - | chr6.4:63733165-63733184 | None:intergenic | 25.0% |
| ! | TAAATATTGGAAAATGCTTC+CGG | + | chr6.4:63730807-63730826 | MS.gene064080:CDS | 25.0% |
| ! | TGATTGCTAATCTTATACAT+TGG | + | chr6.4:63731086-63731105 | MS.gene064080:intron | 25.0% |
| ! | TTCAGATATTGAAATCAAAC+AGG | + | chr6.4:63731744-63731763 | MS.gene064080:CDS | 25.0% |
| !! | AATGCTTTGAATACCATTTA+AGG | - | chr6.4:63733012-63733031 | None:intergenic | 25.0% |
| !! | ATATCAATATTGCTATTGGT+TGG | + | chr6.4:63730912-63730931 | MS.gene064080:intron | 25.0% |
| !! | CAAATGAAATGACTTGTATT+CGG | + | chr6.4:63731713-63731732 | MS.gene064080:CDS | 25.0% |
| !! | TGGAAAAAAGATCATTTTCA+AGG | + | chr6.4:63732424-63732443 | MS.gene064080:CDS | 25.0% |
| !!! | AAATTTGGAGTTTTCTGAAA+AGG | - | chr6.4:63732289-63732308 | None:intergenic | 25.0% |
| !!! | ATCATTGATAATGCAAATGT+AGG | + | chr6.4:63733186-63733205 | MS.gene064080:intron | 25.0% |
| !!! | ATGTTAGTCTTTCTTGTTTT+AGG | + | chr6.4:63733264-63733283 | MS.gene064080:intron | 25.0% |
| !!! | CTTTTTCAGATTTTTACAAC+TGG | + | chr6.4:63732165-63732184 | MS.gene064080:intron | 25.0% |
| AAAGCATGTCAAAATGATGT+TGG | + | chr6.4:63731278-63731297 | MS.gene064080:CDS | 30.0% | |
| AAATAACTGATATACTTCCC+AGG | - | chr6.4:63733244-63733263 | None:intergenic | 30.0% | |
| AAATATTGGAAAATGCTTCC+GGG | + | chr6.4:63730808-63730827 | MS.gene064080:CDS | 30.0% | |
| ACATCAATGTTGTGTACAAA+GGG | + | chr6.4:63731690-63731709 | MS.gene064080:CDS | 30.0% | |
| AGATCTAAACTCTGCATATA+TGG | + | chr6.4:63732695-63732714 | MS.gene064080:CDS | 30.0% | |
| AGGATAATTTGAACTGCTTA+GGG | + | chr6.4:63732526-63732545 | MS.gene064080:CDS | 30.0% | |
| ATTGAAAGAGCAATGCAATT+TGG | - | chr6.4:63733316-63733335 | None:intergenic | 30.0% | |
| CAACATTGATGTGTAATTTG+GGG | - | chr6.4:63731682-63731701 | None:intergenic | 30.0% | |
| CAACTTATTACTTCCTCTAA+CGG | - | chr6.4:63731589-63731608 | None:intergenic | 30.0% | |
| CACAACATTGATGTGTAATT+TGG | - | chr6.4:63731684-63731703 | None:intergenic | 30.0% | |
| CTTTCTACAGAAAATATCTG+CGG | + | chr6.4:63731137-63731156 | MS.gene064080:intron | 30.0% | |
| GGATATGTGTAAAAGTTACA+AGG | + | chr6.4:63732479-63732498 | MS.gene064080:CDS | 30.0% | |
| TAAACTTTCTATAACTGGAC+CGG | - | chr6.4:63732772-63732791 | None:intergenic | 30.0% | |
| TACTCTCAAACTCTTCATTA+TGG | - | chr6.4:63731379-63731398 | None:intergenic | 30.0% | |
| TCTTGATTGGATTGTAGAAA+GGG | - | chr6.4:63732202-63732221 | None:intergenic | 30.0% | |
| TTCGTTCTTGTCATCTTTAA+GGG | + | chr6.4:63730604-63730623 | MS.gene064080:intron | 30.0% | |
| TTCTACAATCCAATCAAGAA+TGG | + | chr6.4:63732203-63732222 | MS.gene064080:CDS | 30.0% | |
| TTCTTGATTGGATTGTAGAA+AGG | - | chr6.4:63732203-63732222 | None:intergenic | 30.0% | |
| ! | AAATTATCCTCTCTGACTTT+TGG | - | chr6.4:63732516-63732535 | None:intergenic | 30.0% |
| ! | AAGAACATTGACAGTTTTCA+TGG | - | chr6.4:63732796-63732815 | None:intergenic | 30.0% |
| ! | AATTATCCTCTCTGACTTTT+GGG | - | chr6.4:63732515-63732534 | None:intergenic | 30.0% |
| ! | ATTGTATTTTTCACATGGCA+TGG | - | chr6.4:63733110-63733129 | None:intergenic | 30.0% |
| ! | ATTTGAAGTAATGTCCGAAA+TGG | + | chr6.4:63732088-63732107 | MS.gene064080:intron | 30.0% |
| ! | ATTTTTCCTTCCAGAAGATA+CGG | - | chr6.4:63732834-63732853 | None:intergenic | 30.0% |
| ! | GATTTTTACAACTGGCATAA+TGG | + | chr6.4:63732173-63732192 | MS.gene064080:intron | 30.0% |
| ! | GCTTTTATATGCAATTCAAG+AGG | + | chr6.4:63733351-63733370 | MS.gene064080:CDS | 30.0% |
| ! | TATTGCTATTGGTTGGAATA+AGG | + | chr6.4:63730919-63730938 | MS.gene064080:intron | 30.0% |
| ! | TCTCAAGAATCTTTAAAAGG+AGG | + | chr6.4:63732255-63732274 | MS.gene064080:CDS | 30.0% |
| ! | TGCACATTGTATTTTTCACA+TGG | - | chr6.4:63733115-63733134 | None:intergenic | 30.0% |
| ! | TTAGTACTAGTTTCTGAAGA+TGG | - | chr6.4:63732366-63732385 | None:intergenic | 30.0% |
| ! | TTTTCAATACCATAATCCCA+TGG | + | chr6.4:63732853-63732872 | MS.gene064080:CDS | 30.0% |
| AAACATGATGCATCAGTTAC+AGG | + | chr6.4:63731768-63731787 | MS.gene064080:CDS | 35.0% | |
| AATATATACCACATACCGTG+TGG | - | chr6.4:63732125-63732144 | None:intergenic | 35.0% | |
| AATGTACTCCATAAAGATGC+AGG | + | chr6.4:63731618-63731637 | MS.gene064080:CDS | 35.0% | |
| ACAATCCAATCAAGAATGGT+AGG | + | chr6.4:63732207-63732226 | MS.gene064080:CDS | 35.0% | |
| ATATGAAATCAACTACGGGA+AGG | + | chr6.4:63731237-63731256 | MS.gene064080:CDS | 35.0% | |
| ATTATAGGTGAAACCAGTGA+GGG | + | chr6.4:63730765-63730784 | MS.gene064080:intron | 35.0% | |
| CACATCAATGTTGTGTACAA+AGG | + | chr6.4:63731689-63731708 | MS.gene064080:CDS | 35.0% | |
| CAGAAAACTCCAAATTTGTG+AGG | + | chr6.4:63732292-63732311 | MS.gene064080:CDS | 35.0% | |
| CATGACTGCTTTGTAAACAA+TGG | + | chr6.4:63731535-63731554 | MS.gene064080:CDS | 35.0% | |
| CATTGTTTACAAAGCAGTCA+TGG | - | chr6.4:63731537-63731556 | None:intergenic | 35.0% | |
| CTTCGTTCTTGTCATCTTTA+AGG | + | chr6.4:63730603-63730622 | MS.gene064080:intron | 35.0% | |
| GAAACTAGTACTAAGCAATC+AGG | + | chr6.4:63732372-63732391 | MS.gene064080:CDS | 35.0% | |
| GAGGATAATTTGAACTGCTT+AGG | + | chr6.4:63732525-63732544 | MS.gene064080:CDS | 35.0% | |
| GATATACTTCCCAGGTTATT+CGG | - | chr6.4:63733236-63733255 | None:intergenic | 35.0% | |
| GGATAATTTGAACTGCTTAG+GGG | + | chr6.4:63732527-63732546 | MS.gene064080:CDS | 35.0% | |
| GGTGAAAAGTAGTGAAAGTT+TGG | + | chr6.4:63732404-63732423 | MS.gene064080:CDS | 35.0% | |
| GTTGAGCTTCTGAATAAAAC+CGG | + | chr6.4:63732750-63732769 | MS.gene064080:CDS | 35.0% | |
| TAGAGAGGGTTTGAAAGATA+CGG | + | chr6.4:63730524-63730543 | MS.gene064080:CDS | 35.0% | |
| TCAAGACTCATTGTTTGTAG+CGG | - | chr6.4:63731416-63731435 | None:intergenic | 35.0% | |
| TGGTGTAACAAGAACCATTT+CGG | - | chr6.4:63732105-63732124 | None:intergenic | 35.0% | |
| ! | ACATTTTTGTTGCATCTTCG+TGG | + | chr6.4:63732982-63733001 | MS.gene064080:intron | 35.0% |
| ! | ACTGTCGAATCAGAACTTTT+AGG | - | chr6.4:63731646-63731665 | None:intergenic | 35.0% |
| ! | AGGATGTGGGTTATGAATAT+GGG | + | chr6.4:63731450-63731469 | MS.gene064080:CDS | 35.0% |
| ! | ATTATCCTCTCTGACTTTTG+GGG | - | chr6.4:63732514-63732533 | None:intergenic | 35.0% |
| ! | CATGCTTTTCTTACAGACAA+AGG | - | chr6.4:63731266-63731285 | None:intergenic | 35.0% |
| ! | CATGTAGTGGAAAGTAAACA+AGG | - | chr6.4:63731905-63731924 | None:intergenic | 35.0% |
| ! | TATATGGAAGCTTTGTGTTC+CGG | + | chr6.4:63732711-63732730 | MS.gene064080:CDS | 35.0% |
| ! | TTTAGGATCCTGCATCTTTA+TGG | - | chr6.4:63731629-63731648 | None:intergenic | 35.0% |
| !! | TAAGCAATCAGGCTTGTTTT+CGG | + | chr6.4:63732383-63732402 | MS.gene064080:CDS | 35.0% |
| AAAAGAGGGAGAAAGAGCAA+AGG | - | chr6.4:63730883-63730902 | None:intergenic | 40.0% | |
| AACATCTCTATGTCTGGACT+CGG | - | chr6.4:63731201-63731220 | None:intergenic | 40.0% | |
| AACGAGAATAAGTTCGTCAC+CGG | - | chr6.4:63732733-63732752 | None:intergenic | 40.0% | |
| ACAAGGTGATTTCTCACTCT+CGG | + | chr6.4:63730663-63730682 | MS.gene064080:intron | 40.0% | |
| AGGGTTTGAAAGATACGGAT+TGG | + | chr6.4:63730529-63730548 | MS.gene064080:CDS | 40.0% | |
| AGTCCAGACATAGAGATGTT+AGG | + | chr6.4:63731201-63731220 | MS.gene064080:CDS | 40.0% | |
| ATGGTTCTTGTTACACCACA+CGG | + | chr6.4:63732107-63732126 | MS.gene064080:intron | 40.0% | |
| GAGCAAAGGTAAACCTTTGA+AGG | - | chr6.4:63730869-63730888 | None:intergenic | 40.0% | |
| GATTATAGGTGAAACCAGTG+AGG | + | chr6.4:63730764-63730783 | MS.gene064080:intron | 40.0% | |
| GGATTGGAAAACACGTAAAG+CGG | + | chr6.4:63730545-63730564 | MS.gene064080:CDS | 40.0% | |
| GTCATCCCAAAAGAGATGAT+TGG | + | chr6.4:63731309-63731328 | MS.gene064080:CDS | 40.0% | |
| GTGAATCGTCTTGTATGTGA+AGG | + | chr6.4:63732672-63732691 | MS.gene064080:CDS | 40.0% | |
| TAATTTGAACTGCTTAGGGG+AGG | + | chr6.4:63732530-63732549 | MS.gene064080:CDS | 40.0% | |
| TCCACTACAGAATGTGTTCT+GGG | - | chr6.4:63731353-63731372 | None:intergenic | 40.0% | |
| TCTACAGAAAATATCTGCGG+AGG | + | chr6.4:63731140-63731159 | MS.gene064080:intron | 40.0% | |
| TCTGCTCAAGTGAGAAAGAA+TGG | + | chr6.4:63732570-63732589 | MS.gene064080:CDS | 40.0% | |
| TCTTCGTGGCATACCTTAAA+TGG | + | chr6.4:63732996-63733015 | MS.gene064080:intron | 40.0% | |
| TCTTGATGTTACAAGCATGC+AGG | + | chr6.4:63731430-63731449 | MS.gene064080:CDS | 40.0% | |
| TGTAATTTGGGGACTTGACT+CGG | - | chr6.4:63731671-63731690 | None:intergenic | 40.0% | |
| TTCATTCTCTTGATTCCTCG+AGG | + | chr6.4:63730636-63730655 | MS.gene064080:intron | 40.0% | |
| TTCCACTACAGAATGTGTTC+TGG | - | chr6.4:63731354-63731373 | None:intergenic | 40.0% | |
| TTTAATAACCCAGGCCTGTT+TGG | - | chr6.4:63733156-63733175 | None:intergenic | 40.0% | |
| TTTCAGCCATGCAGAAAAGA+GGG | + | chr6.4:63733390-63733409 | MS.gene064080:CDS | 40.0% | |
| ! | AACGGTTTGCTTCTCACATT+TGG | - | chr6.4:63731571-63731590 | None:intergenic | 40.0% |
| ! | AACGTGCCAATCATCTCTTT+TGG | - | chr6.4:63731318-63731337 | None:intergenic | 40.0% |
| ! | ACGTGCCAATCATCTCTTTT+GGG | - | chr6.4:63731317-63731336 | None:intergenic | 40.0% |
| ! | CAAAGGTAAACCTTTGAAGG+AGG | - | chr6.4:63730866-63730885 | None:intergenic | 40.0% |
| ! | CAGGATGTGGGTTATGAATA+TGG | + | chr6.4:63731449-63731468 | MS.gene064080:CDS | 40.0% |
| ! | CAGTAGTTTGTGTTACTCTC+GGG | - | chr6.4:63732645-63732664 | None:intergenic | 40.0% |
| ! | CCAGTAGTTTGTGTTACTCT+CGG | - | chr6.4:63732646-63732665 | None:intergenic | 40.0% |
| ! | CTAGTTTCTGAAGATGGCTT+TGG | - | chr6.4:63732360-63732379 | None:intergenic | 40.0% |
| ! | CTTGAAGCGTTATCATGTAG+TGG | - | chr6.4:63731918-63731937 | None:intergenic | 40.0% |
| ! | TTGCTTCTCACATTTGGCTT+CGG | - | chr6.4:63731565-63731584 | None:intergenic | 40.0% |
| ! | TTTTCAGCCATGCAGAAAAG+AGG | + | chr6.4:63733389-63733408 | MS.gene064080:CDS | 40.0% |
| !! | ACCATTTCTAGCATTGGTTC+TGG | - | chr6.4:63732616-63732635 | None:intergenic | 40.0% |
| !! | AGGACAACCATTTCTAGCAT+TGG | - | chr6.4:63732622-63732641 | None:intergenic | 40.0% |
| !! | ATCGCTTTTACCGAATAACC+TGG | + | chr6.4:63733223-63733242 | MS.gene064080:intron | 40.0% |
| !! | GCTGTTGGTAGTATTAGAGA+GGG | + | chr6.4:63730510-63730529 | MS.gene064080:CDS | 40.0% |
| !! | TCGCTTTTACCGAATAACCT+GGG | + | chr6.4:63733224-63733243 | MS.gene064080:intron | 40.0% |
| AAGGAGGATCCAGTTTCTGA+AGG | - | chr6.4:63730850-63730869 | None:intergenic | 45.0% | |
| AATCACCTTGTCAAACCTCG+AGG | - | chr6.4:63730654-63730673 | None:intergenic | 45.0% | |
| AATGCAATTTGGTCCGTGGA+CGG | - | chr6.4:63733305-63733324 | None:intergenic | 45.0% | |
| ACTCATTGTTTGTAGCGGCT+TGG | - | chr6.4:63731411-63731430 | None:intergenic | 45.0% | |
| CACTTTAGCACCGTATCTTC+TGG | + | chr6.4:63732821-63732840 | MS.gene064080:CDS | 45.0% | |
| CCAAGCCTACCATTCTTGAT+TGG | - | chr6.4:63732215-63732234 | None:intergenic | 45.0% | |
| CCAATCAAGAATGGTAGGCT+TGG | + | chr6.4:63732212-63732231 | MS.gene064080:CDS | 45.0% | |
| CCACTACAGAATGTGTTCTG+GGG | - | chr6.4:63731352-63731371 | None:intergenic | 45.0% | |
| CCGAGAGTAACACAAACTAC+TGG | + | chr6.4:63732643-63732662 | MS.gene064080:CDS | 45.0% | |
| CTATCTCCAGCATGAATCCT+CGG | - | chr6.4:63732456-63732475 | None:intergenic | 45.0% | |
| GAAACTGGATCCTCCTTCAA+AGG | + | chr6.4:63730853-63730872 | MS.gene064080:CDS | 45.0% | |
| GAGCCTAACATCTCTATGTC+TGG | - | chr6.4:63731207-63731226 | None:intergenic | 45.0% | |
| GATTCATGCTGGAGATAGTG+TGG | + | chr6.4:63732458-63732477 | MS.gene064080:CDS | 45.0% | |
| GCCAGAACCAATGCTAGAAA+TGG | + | chr6.4:63732612-63732631 | MS.gene064080:CDS | 45.0% | |
| GGGTTATGAATATGGGCCTA+TGG | + | chr6.4:63731457-63731476 | MS.gene064080:CDS | 45.0% | |
| GTTACAAGCATGCAGGATGT+GGG | + | chr6.4:63731437-63731456 | MS.gene064080:CDS | 45.0% | |
| TGATTCCTCGAGGTTTGACA+AGG | + | chr6.4:63730646-63730665 | MS.gene064080:intron | 45.0% | |
| TGTGAGAAGCAAACCGTTAG+AGG | + | chr6.4:63731573-63731592 | MS.gene064080:CDS | 45.0% | |
| TGTTACAAGCATGCAGGATG+TGG | + | chr6.4:63731436-63731455 | MS.gene064080:CDS | 45.0% | |
| TTAGCACCGTATCTTCTGGA+AGG | + | chr6.4:63732825-63732844 | MS.gene064080:CDS | 45.0% | |
| TTGTTACACCACACGGTATG+TGG | + | chr6.4:63732114-63732133 | MS.gene064080:intron | 45.0% | |
| ! | TAGTTTGTGTTACTCTCGGG+AGG | - | chr6.4:63732642-63732661 | None:intergenic | 45.0% |
| !! | AGATGGCTTTGGAGTGCATA+CGG | - | chr6.4:63732349-63732368 | None:intergenic | 45.0% |
| !! | GGCTGTTGGTAGTATTAGAG+AGG | + | chr6.4:63730509-63730528 | MS.gene064080:CDS | 45.0% |
| !! | TTGGCTCTGCCTCACAAATT+TGG | - | chr6.4:63732304-63732323 | None:intergenic | 45.0% |
| AAAGCGGCTTCTGTTGCGTT+GGG | + | chr6.4:63730561-63730580 | MS.gene064080:CDS | 50.0% | |
| ACTACCGAGCCTTCAGAAAC+TGG | + | chr6.4:63730838-63730857 | MS.gene064080:CDS | 50.0% | |
| ATCTCTATGTCTGGACTCGG+TGG | - | chr6.4:63731198-63731217 | None:intergenic | 50.0% | |
| CACTCCTGCTTGTCATCCAT+AGG | - | chr6.4:63731476-63731495 | None:intergenic | 50.0% | |
| CCCCAGAACACATTCTGTAG+TGG | + | chr6.4:63731349-63731368 | MS.gene064080:CDS | 50.0% | |
| CTTAACCAGTGCAGCCAAAC+AGG | + | chr6.4:63733139-63733158 | MS.gene064080:intron | 50.0% | |
| GAGCAATGCAATTTGGTCCG+TGG | - | chr6.4:63733309-63733328 | None:intergenic | 50.0% | |
| TAAAGCGGCTTCTGTTGCGT+TGG | + | chr6.4:63730560-63730579 | MS.gene064080:CDS | 50.0% | |
| TGTAAAACCGCATCCCTCAC+TGG | - | chr6.4:63730781-63730800 | None:intergenic | 50.0% | |
| ! | GGATCCAGTTTCTGAAGGCT+CGG | - | chr6.4:63730845-63730864 | None:intergenic | 50.0% |
| ! | GGCTCGGTAGTATAATGACC+CGG | - | chr6.4:63730829-63730848 | None:intergenic | 50.0% |
| ! | GTTGAAATGAGCACCGTCCA+CGG | + | chr6.4:63733289-63733308 | MS.gene064080:CDS | 50.0% |
| ! | TCCTGGGAGAAGCGACATTT+TGG | - | chr6.4:63732323-63732342 | None:intergenic | 50.0% |
| !! | CATTTTCAAGGAGCCAACCG+AGG | + | chr6.4:63732436-63732455 | MS.gene064080:CDS | 50.0% |
| AACTTGCCTGCTGCAGCCAT+GGG | - | chr6.4:63732872-63732891 | None:intergenic | 55.0% | |
| AGCCAACCGAGGATTCATGC+TGG | + | chr6.4:63732447-63732466 | MS.gene064080:CDS | 55.0% | |
| CATAATCCCATGGCTGCAGC+AGG | + | chr6.4:63732863-63732882 | MS.gene064080:CDS | 55.0% | |
| CTCCAGCATGAATCCTCGGT+TGG | - | chr6.4:63732452-63732471 | None:intergenic | 55.0% | |
| CTGCTGCAGCCATGGGATTA+TGG | - | chr6.4:63732865-63732884 | None:intergenic | 55.0% | |
| GACTGCCCCAAAAGTCAGAG+AGG | + | chr6.4:63732506-63732525 | MS.gene064080:CDS | 55.0% | |
| GGAGTGCATACGGAGATCCT+GGG | - | chr6.4:63732339-63732358 | None:intergenic | 55.0% | |
| GGTGAAACCAGTGAGGGATG+CGG | + | chr6.4:63730771-63730790 | MS.gene064080:intron | 55.0% | |
| TATCTGCGGAGGTGACTCTG+TGG | + | chr6.4:63731151-63731170 | MS.gene064080:CDS | 55.0% | |
| TGGAGTGCATACGGAGATCC+TGG | - | chr6.4:63732340-63732359 | None:intergenic | 55.0% | |
| TGGGCCTATGGATGACAAGC+AGG | + | chr6.4:63731469-63731488 | MS.gene064080:CDS | 55.0% | |
| ! | GCCAAAATGTCGCTTCTCCC+AGG | + | chr6.4:63732319-63732338 | MS.gene064080:CDS | 55.0% |
| ! | TGCACGCCCTCTTTTCTGCA+TGG | - | chr6.4:63733399-63733418 | None:intergenic | 55.0% |
| !! | AGCATTGGTTCTGGCAGCAG+AGG | - | chr6.4:63732607-63732626 | None:intergenic | 55.0% |
| CAGTGCAGCCAAACAGGCCT+GGG | + | chr6.4:63733145-63733164 | MS.gene064080:intron | 60.0% | |
| GAACTTGCCTGCTGCAGCCA+TGG | - | chr6.4:63732873-63732892 | None:intergenic | 60.0% | |
| CCAGGCCTGTTTGGCTGCAC+TGG | - | chr6.4:63733147-63733166 | None:intergenic | 65.0% | |
| CCAGTGCAGCCAAACAGGCC+TGG | + | chr6.4:63733144-63733163 | MS.gene064080:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63730497 | 63733423 | 63730497 | ID=MS.gene064080 |
| chr6.4 | mRNA | 63730497 | 63733423 | 63730497 | ID=MS.gene064080.t1;Parent=MS.gene064080 |
| chr6.4 | exon | 63730497 | 63730599 | 63730497 | ID=MS.gene064080.t1.exon1;Parent=MS.gene064080.t1 |
| chr6.4 | CDS | 63730497 | 63730599 | 63730497 | ID=cds.MS.gene064080.t1;Parent=MS.gene064080.t1 |
| chr6.4 | exon | 63730772 | 63730874 | 63730772 | ID=MS.gene064080.t1.exon2;Parent=MS.gene064080.t1 |
| chr6.4 | CDS | 63730772 | 63730874 | 63730772 | ID=cds.MS.gene064080.t1;Parent=MS.gene064080.t1 |
| chr6.4 | exon | 63731147 | 63731494 | 63731147 | ID=MS.gene064080.t1.exon3;Parent=MS.gene064080.t1 |
| chr6.4 | CDS | 63731147 | 63731494 | 63731147 | ID=cds.MS.gene064080.t1;Parent=MS.gene064080.t1 |
| chr6.4 | exon | 63731524 | 63731789 | 63731524 | ID=MS.gene064080.t1.exon4;Parent=MS.gene064080.t1 |
| chr6.4 | CDS | 63731524 | 63731789 | 63731524 | ID=cds.MS.gene064080.t1;Parent=MS.gene064080.t1 |
| chr6.4 | exon | 63732174 | 63732884 | 63732174 | ID=MS.gene064080.t1.exon5;Parent=MS.gene064080.t1 |
| chr6.4 | CDS | 63732174 | 63732884 | 63732174 | ID=cds.MS.gene064080.t1;Parent=MS.gene064080.t1 |
| chr6.4 | exon | 63733286 | 63733423 | 63733286 | ID=MS.gene064080.t1.exon6;Parent=MS.gene064080.t1 |
| chr6.4 | CDS | 63733286 | 63733423 | 63733286 | ID=cds.MS.gene064080.t1;Parent=MS.gene064080.t1 |
| Gene Sequence |
| Protein sequence |
