Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064323.t1 | XP_003620624.1 | 96.7 | 307 | 10 | 0 | 1 | 307 | 1 | 307 | 4.20E-163 | 583.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064323.t1 | G7KPF3 | 96.7 | 307 | 10 | 0 | 1 | 307 | 1 | 307 | 3.0e-163 | 583.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene064323 | 0.829766 | 4.28E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene064323 | 0.808341 | 3.25E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene064323 | 0.803068 | 4.16E-49 | -1.69E-46 |
| MS.gene050562 | MS.gene064323 | 0.802645 | 5.09E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene064323 | 0.833663 | 4.68E-56 | -1.69E-46 |
| MS.gene051744 | MS.gene064323 | 0.81203 | 5.20E-51 | -1.69E-46 |
| MS.gene053082 | MS.gene064323 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene064323 | 0.8031 | 4.10E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene064323 | 0.829512 | 4.94E-55 | -1.69E-46 |
| MS.gene05531 | MS.gene064323 | 0.810166 | 1.32E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene064323 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene064323 | 0.81829 | 2.12E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene064323 | 0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene064323 | 0.809429 | 1.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064323.t1 | MTR_6g087880 | 96.743 | 307 | 10 | 0 | 1 | 307 | 1 | 307 | 0.0 | 615 |
| MS.gene064323.t1 | MTR_2g101870 | 53.994 | 313 | 132 | 7 | 1 | 306 | 2 | 309 | 1.82e-111 | 325 |
| MS.gene064323.t1 | MTR_6g081930 | 38.854 | 314 | 164 | 6 | 1 | 306 | 1 | 294 | 1.09e-59 | 192 |
| MS.gene064323.t1 | MTR_8g106580 | 42.517 | 294 | 151 | 6 | 1 | 290 | 1 | 280 | 2.83e-54 | 179 |
| MS.gene064323.t1 | MTR_4g075730 | 37.459 | 307 | 159 | 10 | 1 | 287 | 6 | 299 | 1.14e-47 | 162 |
| MS.gene064323.t1 | MTR_8g086610 | 33.758 | 157 | 98 | 2 | 135 | 287 | 106 | 260 | 6.92e-30 | 114 |
| MS.gene064323.t1 | MTR_0154s0010 | 39.855 | 138 | 77 | 4 | 174 | 307 | 1 | 136 | 7.35e-28 | 105 |
| MS.gene064323.t1 | MTR_4g075730 | 38.261 | 230 | 113 | 9 | 1 | 214 | 6 | 222 | 2.09e-27 | 107 |
| MS.gene064323.t1 | MTR_3g037650 | 32.389 | 247 | 144 | 8 | 50 | 289 | 25 | 255 | 9.64e-26 | 103 |
| MS.gene064323.t1 | MTR_3g033530 | 28.025 | 314 | 178 | 12 | 25 | 295 | 29 | 337 | 8.28e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064323.t1 | AT3G24605 | 42.258 | 310 | 156 | 7 | 1 | 303 | 3 | 296 | 1.92e-71 | 223 |
| MS.gene064323.t1 | AT1G45688 | 38.484 | 343 | 162 | 9 | 1 | 301 | 1 | 336 | 8.17e-59 | 192 |
| MS.gene064323.t1 | AT5G42860 | 37.576 | 330 | 161 | 9 | 1 | 301 | 1 | 314 | 1.36e-58 | 191 |
| MS.gene064323.t1 | AT3G24600 | 39.414 | 307 | 177 | 6 | 1 | 304 | 2 | 302 | 6.13e-51 | 171 |
| MS.gene064323.t1 | AT1G45688 | 40.000 | 245 | 118 | 8 | 1 | 223 | 1 | 238 | 6.27e-41 | 143 |
| MS.gene064323.t1 | AT2G41990 | 34.076 | 314 | 168 | 9 | 1 | 298 | 1 | 291 | 7.73e-40 | 141 |
| MS.gene064323.t1 | AT4G35170 | 32.632 | 285 | 168 | 8 | 15 | 287 | 8 | 280 | 8.55e-40 | 141 |
| MS.gene064323.t1 | AT3G08490 | 24.883 | 213 | 152 | 5 | 99 | 304 | 57 | 268 | 1.55e-14 | 72.8 |
Find 57 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGACTTTGAACGTAATA+AGG | 0.197913 | 6.1:-76674703 | None:intergenic |
| TGCTGTTTGTGGGTTTGTTT+TGG | 0.310858 | 6.1:+76674999 | MS.gene064323:CDS |
| AATAGAAAAGTGAATGATAA+AGG | 0.318907 | 6.1:+76674880 | MS.gene064323:CDS |
| TCACCTTCACATCAATCTTA+TGG | 0.323598 | 6.1:+76674784 | MS.gene064323:CDS |
| CATAACCCTGCAACTTTCTT+CGG | 0.342827 | 6.1:+76676471 | MS.gene064323:CDS |
| TAAAGGGTGGATTGGATCTA+AGG | 0.346851 | 6.1:+76674897 | MS.gene064323:CDS |
| ACAGTACATAACTTCTACTT+TGG | 0.351398 | 6.1:+76676378 | MS.gene064323:CDS |
| AAGGACTTTGAACGTAATAA+GGG | 0.376152 | 6.1:-76674702 | None:intergenic |
| TTTGATGTACTTCTTGTTGT+GGG | 0.400248 | 6.1:-76677440 | None:intergenic |
| TCATGAGAAGATTCTCTTGA+AGG | 0.427779 | 6.1:-76674721 | None:intergenic |
| TAAATGCCGAAGAAAGTTGC+AGG | 0.435222 | 6.1:-76676477 | None:intergenic |
| TCTTCTTCAAGTAGAATCTC+TGG | 0.444326 | 6.1:+76674823 | MS.gene064323:CDS |
| GAAGAAGAAAATGGTGGTTA+TGG | 0.447068 | 6.1:+76674925 | MS.gene064323:CDS |
| GTGAATGATAAAGGGTGGAT+TGG | 0.450115 | 6.1:+76674889 | MS.gene064323:CDS |
| TTCACTGTAAGCATCTTAGT+TGG | 0.459875 | 6.1:-76676426 | None:intergenic |
| GGAAGCAAGGTTCCATTGTA+TGG | 0.470323 | 6.1:+76677271 | MS.gene064323:CDS |
| TGGTGCAGATGTTGCTAGCT+CGG | 0.471095 | 6.1:+76677297 | MS.gene064323:CDS |
| GTTTGATGTACTTCTTGTTG+TGG | 0.480305 | 6.1:-76677441 | None:intergenic |
| AAGTCGCGCGGAAATGTTGT+AGG | 0.496383 | 6.1:+76677361 | MS.gene064323:CDS |
| AAGGTGATTGAAGAAGAAAA+TGG | 0.496674 | 6.1:+76674916 | MS.gene064323:CDS |
| GTATATTGACAGACACTGTT+CGG | 0.499883 | 6.1:-76677246 | None:intergenic |
| TTTGTGATCTTGGTGATGAT+GGG | 0.501451 | 6.1:-76674672 | None:intergenic |
| CATAACTTCTACTTTGGAGA+AGG | 0.514215 | 6.1:+76676384 | MS.gene064323:CDS |
| TTGAAGAAGAAGCTCTTGAA+TGG | 0.526972 | 6.1:-76674810 | None:intergenic |
| ATAGAAAAGTGAATGATAAA+GGG | 0.527874 | 6.1:+76674881 | MS.gene064323:CDS |
| CGGAAATGTTGTAGGCAAGT+TGG | 0.532289 | 6.1:+76677369 | MS.gene064323:CDS |
| AAGGTTCCATTGTATGGCGC+TGG | 0.535461 | 6.1:+76677277 | MS.gene064323:CDS |
| TCAAGAGAATCTTCTCATGA+TGG | 0.544641 | 6.1:+76674724 | MS.gene064323:CDS |
| GGAGAAGGGTCAGATGTCAC+TGG | 0.551406 | 6.1:+76676399 | MS.gene064323:CDS |
| GAAAAGTGAATGATAAAGGG+TGG | 0.557185 | 6.1:+76674884 | MS.gene064323:CDS |
| AACAATGCAACCAAGTCCAA+TGG | 0.570691 | 6.1:+76674759 | MS.gene064323:CDS |
| TGATGTACTTCTTGTTGTGG+GGG | 0.575012 | 6.1:-76677438 | None:intergenic |
| TTGATGTACTTCTTGTTGTG+GGG | 0.577719 | 6.1:-76677439 | None:intergenic |
| ATACATAAGATTCACTGACT+TGG | 0.579991 | 6.1:-76676508 | None:intergenic |
| TGATGTGAAGGTGAATCCAT+TGG | 0.581487 | 6.1:-76674775 | None:intergenic |
| GAAGGTGAATCCATTGGACT+TGG | 0.584702 | 6.1:-76674769 | None:intergenic |
| GTGATCGAAATGGAGTTTCG+AGG | 0.592967 | 6.1:+76674959 | MS.gene064323:CDS |
| TCTGATCTTACAGTTGCGAC+CGG | 0.593421 | 6.1:+76676531 | MS.gene064323:CDS |
| GTCTTTGAAGTTAAGTCGCG+CGG | 0.601720 | 6.1:+76677349 | MS.gene064323:CDS |
| TGTCAATATACAAGGAAGCA+AGG | 0.603269 | 6.1:+76677258 | MS.gene064323:CDS |
| ACAGTGTCTGTCAATATACA+AGG | 0.604063 | 6.1:+76677250 | MS.gene064323:CDS |
| ATAACTTCTACTTTGGAGAA+GGG | 0.607546 | 6.1:+76676385 | MS.gene064323:CDS |
| TCTGCACCAGCGCCATACAA+TGG | 0.611769 | 6.1:-76677283 | None:intergenic |
| TCGAAATGGAGTTTCGAGGA+GGG | 0.621143 | 6.1:+76674963 | MS.gene064323:CDS |
| ATGTTGTAGGCAAGTTGGTG+AGG | 0.621904 | 6.1:+76677374 | MS.gene064323:CDS |
| GTGATTGAAGAAGAAAATGG+TGG | 0.627521 | 6.1:+76674919 | MS.gene064323:CDS |
| CAAACCTCAGCTCAGTGTCA+AGG | 0.632858 | 6.1:+76675068 | MS.gene064323:CDS |
| AGGACTTTGAACGTAATAAG+GGG | 0.639543 | 6.1:-76674701 | None:intergenic |
| TATACCTTGACACTGAGCTG+AGG | 0.640482 | 6.1:-76675072 | None:intergenic |
| TGACCATAAGATTGATGTGA+AGG | 0.643898 | 6.1:-76674787 | None:intergenic |
| TCTTCAAGTAGAATCTCTGG+TGG | 0.645890 | 6.1:+76674826 | MS.gene064323:CDS |
| TGTTAGAATACTTACCTCGC+CGG | 0.646947 | 6.1:-76676550 | None:intergenic |
| ATCGAAATGGAGTTTCGAGG+AGG | 0.650916 | 6.1:+76674962 | MS.gene064323:CDS |
| TATTGACAGACACTGTTCGG+CGG | 0.651348 | 6.1:-76677243 | None:intergenic |
| TCTTACAGTTGCGACCGGCG+AGG | 0.653403 | 6.1:+76676536 | MS.gene064323:CDS |
| AAATGCCGAAGAAAGTTGCA+GGG | 0.681577 | 6.1:-76676476 | None:intergenic |
| GTTGCTAGCTCGGTGAACAA+CGG | 0.683429 | 6.1:+76677307 | MS.gene064323:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGTTTTTTTTAATCAA+AGG | + | chr6.1:76675451-76675470 | MS.gene064323:intron | 10.0% |
| !!! | TTTTTTTTATTATAGTTAGA+AGG | + | chr6.1:76675489-76675508 | MS.gene064323:intron | 10.0% |
| !! | AAATGAAATTTCAAAAAAGT+TGG | - | chr6.1:76675998-76676017 | None:intergenic | 15.0% |
| !! | AATGAAATTTCAAAAAAGTT+GGG | - | chr6.1:76675997-76676016 | None:intergenic | 15.0% |
| !! | AATAGAAAAGTGAATGATAA+AGG | + | chr6.1:76674880-76674899 | MS.gene064323:CDS | 20.0% |
| !! | ATAGAAAAGTGAATGATAAA+GGG | + | chr6.1:76674881-76674900 | MS.gene064323:CDS | 20.0% |
| !! | TGATAAACTTATAGATGTTT+AGG | - | chr6.1:76677017-76677036 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTCAAAATCAATG+TGG | - | chr6.1:76675771-76675790 | None:intergenic | 20.0% |
| !!! | TCACAATTGTGTTTTAATTA+AGG | + | chr6.1:76675123-76675142 | MS.gene064323:intron | 20.0% |
| !!! | TTGATAGTTAAATTCATACT+AGG | + | chr6.1:76675625-76675644 | MS.gene064323:intron | 20.0% |
| !!! | TTTGTTTTGTTTGATCATTT+GGG | + | chr6.1:76675029-76675048 | MS.gene064323:CDS | 20.0% |
| !!! | TTTTAAAAAAATTGAGACAC+AGG | - | chr6.1:76676978-76676997 | None:intergenic | 20.0% |
| ! | ATTCATACTAGGAGATATTA+TGG | + | chr6.1:76675636-76675655 | MS.gene064323:intron | 25.0% |
| ! | CAGGAAAATATATGATCATT+TGG | + | chr6.1:76675574-76675593 | MS.gene064323:intron | 25.0% |
| ! | TTGAAAAAAAAGTTGCACTT+TGG | + | chr6.1:76675779-76675798 | MS.gene064323:intron | 25.0% |
| !!! | GGTTATAATAGCTCTTTTTT+GGG | + | chr6.1:76674847-76674866 | MS.gene064323:CDS | 25.0% |
| !!! | GTTTGTTTTGTTTGATCATT+TGG | + | chr6.1:76675028-76675047 | MS.gene064323:CDS | 25.0% |
| !!! | TGGTTATAATAGCTCTTTTT+TGG | + | chr6.1:76674846-76674865 | MS.gene064323:CDS | 25.0% |
| AAATAAGATATAAGCTGTCC+TGG | - | chr6.1:76676728-76676747 | None:intergenic | 30.0% | |
| AAATTTCAAAAAAGTTGGGC+AGG | - | chr6.1:76675993-76676012 | None:intergenic | 30.0% | |
| AAGGACTTTGAACGTAATAA+GGG | - | chr6.1:76674705-76674724 | None:intergenic | 30.0% | |
| AAGGTGATTGAAGAAGAAAA+TGG | + | chr6.1:76674916-76674935 | MS.gene064323:CDS | 30.0% | |
| AAGTACTTGAGAAACTGTTT+GGG | + | chr6.1:76676680-76676699 | MS.gene064323:intron | 30.0% | |
| ACAGTACATAACTTCTACTT+TGG | + | chr6.1:76676378-76676397 | MS.gene064323:CDS | 30.0% | |
| AGTTTCTCAAGTACTTATGT+CGG | - | chr6.1:76676676-76676695 | None:intergenic | 30.0% | |
| ATACCAAAAGTCTACCATTT+AGG | - | chr6.1:76675409-76675428 | None:intergenic | 30.0% | |
| ATGGAATTTGACAGTAAGAA+TGG | - | chr6.1:76677184-76677203 | None:intergenic | 30.0% | |
| CATAGTTTATCACAGAACAA+TGG | + | chr6.1:76676161-76676180 | MS.gene064323:intron | 30.0% | |
| CTTGCAAAGCTTATAGAAAT+AGG | + | chr6.1:76675275-76675294 | MS.gene064323:intron | 30.0% | |
| GATATTATGGTTCAGCAAAA+TGG | + | chr6.1:76675649-76675668 | MS.gene064323:intron | 30.0% | |
| GTCAAAAGTGAGTTCAAAAT+TGG | + | chr6.1:76677094-76677113 | MS.gene064323:intron | 30.0% | |
| GTTTCTAAATCAACAAGTAC+TGG | - | chr6.1:76676580-76676599 | None:intergenic | 30.0% | |
| TAAGTACTTGAGAAACTGTT+TGG | + | chr6.1:76676679-76676698 | MS.gene064323:intron | 30.0% | |
| TAGCTACTAGTTAACAAAAC+TGG | + | chr6.1:76676221-76676240 | MS.gene064323:intron | 30.0% | |
| TATAAGAAACTTCCTTGCAT+TGG | + | chr6.1:76675091-76675110 | MS.gene064323:intron | 30.0% | |
| TATCTATGTTATGTGAACAG+TGG | + | chr6.1:76676246-76676265 | MS.gene064323:intron | 30.0% | |
| TTGTTAACTAGTAGCTATAG+TGG | - | chr6.1:76676218-76676237 | None:intergenic | 30.0% | |
| ! | ATAACTTCTACTTTGGAGAA+GGG | + | chr6.1:76676385-76676404 | MS.gene064323:CDS | 30.0% |
| ! | ATACATAAGATTCACTGACT+TGG | - | chr6.1:76676511-76676530 | None:intergenic | 30.0% |
| ! | TTTGATGTACTTCTTGTTGT+GGG | - | chr6.1:76677443-76677462 | None:intergenic | 30.0% |
| !!! | AAGCACTTTTAAGACTGTTT+GGG | - | chr6.1:76675347-76675366 | None:intergenic | 30.0% |
| !!! | AGTTTTTCATTGCTGTTTGT+GGG | + | chr6.1:76674989-76675008 | MS.gene064323:CDS | 30.0% |
| !!! | TAAGCACTTTTAAGACTGTT+TGG | - | chr6.1:76675348-76675367 | None:intergenic | 30.0% |
| !!! | TGAACTCACTTTTGACTTAT+GGG | - | chr6.1:76677090-76677109 | None:intergenic | 30.0% |
| !!! | TTGAACTCACTTTTGACTTA+TGG | - | chr6.1:76677091-76677110 | None:intergenic | 30.0% |
| AAATAAAGTACACGAGGCAA+AGG | - | chr6.1:76675881-76675900 | None:intergenic | 35.0% | |
| AATAGGCTCAAAACAGCTTA+TGG | + | chr6.1:76675292-76675311 | MS.gene064323:intron | 35.0% | |
| ACAGTGTCTGTCAATATACA+AGG | + | chr6.1:76677250-76677269 | MS.gene064323:CDS | 35.0% | |
| ACTACCAAATAAAGTACACG+AGG | - | chr6.1:76675887-76675906 | None:intergenic | 35.0% | |
| AGGACTTTGAACGTAATAAG+GGG | - | chr6.1:76674704-76674723 | None:intergenic | 35.0% | |
| ATTAAGCTGTTCATCCAAAC+AGG | + | chr6.1:76676838-76676857 | MS.gene064323:intron | 35.0% | |
| GAAAAGTGAATGATAAAGGG+TGG | + | chr6.1:76674884-76674903 | MS.gene064323:CDS | 35.0% | |
| GAAGAAGAAAATGGTGGTTA+TGG | + | chr6.1:76674925-76674944 | MS.gene064323:CDS | 35.0% | |
| GAAGGACTTTGAACGTAATA+AGG | - | chr6.1:76674706-76674725 | None:intergenic | 35.0% | |
| GGCAAGATTGTAACATAACA+AGG | - | chr6.1:76676052-76676071 | None:intergenic | 35.0% | |
| GTATATTGACAGACACTGTT+CGG | - | chr6.1:76677249-76677268 | None:intergenic | 35.0% | |
| GTGATTGAAGAAGAAAATGG+TGG | + | chr6.1:76674919-76674938 | MS.gene064323:CDS | 35.0% | |
| GTTTGATGTACTTCTTGTTG+TGG | - | chr6.1:76677444-76677463 | None:intergenic | 35.0% | |
| TCAAGAGAATCTTCTCATGA+TGG | + | chr6.1:76674724-76674743 | MS.gene064323:CDS | 35.0% | |
| TCAATCCATACAGTCCTAAA+TGG | + | chr6.1:76675392-76675411 | MS.gene064323:intron | 35.0% | |
| TCACCTTCACATCAATCTTA+TGG | + | chr6.1:76674784-76674803 | MS.gene064323:CDS | 35.0% | |
| TCATGAGAAGATTCTCTTGA+AGG | - | chr6.1:76674724-76674743 | None:intergenic | 35.0% | |
| TCTTCTTCAAGTAGAATCTC+TGG | + | chr6.1:76674823-76674842 | MS.gene064323:CDS | 35.0% | |
| TGACCATAAGATTGATGTGA+AGG | - | chr6.1:76674790-76674809 | None:intergenic | 35.0% | |
| TGTCAATATACAAGGAAGCA+AGG | + | chr6.1:76677258-76677277 | MS.gene064323:CDS | 35.0% | |
| TGTTACAATCTTGCCAATCA+CGG | + | chr6.1:76676057-76676076 | MS.gene064323:intron | 35.0% | |
| TTCACTGTAAGCATCTTAGT+TGG | - | chr6.1:76676429-76676448 | None:intergenic | 35.0% | |
| TTGAAGAAGAAGCTCTTGAA+TGG | - | chr6.1:76674813-76674832 | None:intergenic | 35.0% | |
| TTTGCCTCGTGTACTTTATT+TGG | + | chr6.1:76675880-76675899 | MS.gene064323:intron | 35.0% | |
| ! | AGTCCTAAATGGTAGACTTT+TGG | + | chr6.1:76675403-76675422 | MS.gene064323:intron | 35.0% |
| ! | CATAACTTCTACTTTGGAGA+AGG | + | chr6.1:76676384-76676403 | MS.gene064323:CDS | 35.0% |
| ! | TTGATGTACTTCTTGTTGTG+GGG | - | chr6.1:76677442-76677461 | None:intergenic | 35.0% |
| !! | AAAAAAGTTCTAGGCCTGTT+TGG | - | chr6.1:76676855-76676874 | None:intergenic | 35.0% |
| !! | AGTTCAAAATTGGCCTTTGA+AGG | + | chr6.1:76677104-76677123 | MS.gene064323:intron | 35.0% |
| !! | GATTTTGATCGTGATCGAAA+TGG | + | chr6.1:76674949-76674968 | MS.gene064323:CDS | 35.0% |
| !! | TTTGTGATCTTGGTGATGAT+GGG | - | chr6.1:76674675-76674694 | None:intergenic | 35.0% |
| !!! | CAGTTTTTCATTGCTGTTTG+TGG | + | chr6.1:76674988-76675007 | MS.gene064323:CDS | 35.0% |
| !!! | GATTCACTGATTTTTGTGAC+TGG | + | chr6.1:76675600-76675619 | MS.gene064323:intron | 35.0% |
| !!! | GTTTTAATTAAGGCTCTGCT+TGG | + | chr6.1:76675133-76675152 | MS.gene064323:intron | 35.0% |
| !!! | TTTTGTGATCTTGGTGATGA+TGG | - | chr6.1:76674676-76674695 | None:intergenic | 35.0% |
| AAATGCCGAAGAAAGTTGCA+GGG | - | chr6.1:76676479-76676498 | None:intergenic | 40.0% | |
| AACAATGCAACCAAGTCCAA+TGG | + | chr6.1:76674759-76674778 | MS.gene064323:CDS | 40.0% | |
| AGACTGTTTGGGAAAGCTTA+TGG | - | chr6.1:76675336-76675355 | None:intergenic | 40.0% | |
| ATGCCAAATCCAAGACAAGA+GGG | - | chr6.1:76675543-76675562 | None:intergenic | 40.0% | |
| CATAACCCTGCAACTTTCTT+CGG | + | chr6.1:76676471-76676490 | MS.gene064323:CDS | 40.0% | |
| CATTTAAGCCACTCCTTCAA+AGG | - | chr6.1:76677120-76677139 | None:intergenic | 40.0% | |
| CTGTCCGTCAAAAAAGTTCT+AGG | - | chr6.1:76676864-76676883 | None:intergenic | 40.0% | |
| GTGAATGATAAAGGGTGGAT+TGG | + | chr6.1:76674889-76674908 | MS.gene064323:CDS | 40.0% | |
| GTTACAATCTTGCCAATCAC+GGG | + | chr6.1:76676058-76676077 | MS.gene064323:intron | 40.0% | |
| GTTCTGTTCAAGTGCATACA+TGG | + | chr6.1:76675713-76675732 | MS.gene064323:intron | 40.0% | |
| GTTTGGATTGACTGAGAGTT+GGG | - | chr6.1:76675840-76675859 | None:intergenic | 40.0% | |
| TAAATGCCGAAGAAAGTTGC+AGG | - | chr6.1:76676480-76676499 | None:intergenic | 40.0% | |
| TCTTCAAGTAGAATCTCTGG+TGG | + | chr6.1:76674826-76674845 | MS.gene064323:CDS | 40.0% | |
| TGATGTGAAGGTGAATCCAT+TGG | - | chr6.1:76674778-76674797 | None:intergenic | 40.0% | |
| TGTTAGAATACTTACCTCGC+CGG | - | chr6.1:76676553-76676572 | None:intergenic | 40.0% | |
| TGTTTGGATTGACTGAGAGT+TGG | - | chr6.1:76675841-76675860 | None:intergenic | 40.0% | |
| TTAAGACATCCCTCTTGTCT+TGG | + | chr6.1:76675531-76675550 | MS.gene064323:intron | 40.0% | |
| TTGCATAACCTGCTTCATGA+GGG | + | chr6.1:76675946-76675965 | MS.gene064323:intron | 40.0% | |
| TTTCTTCAACTGCAGCAACA+TGG | - | chr6.1:76677203-76677222 | None:intergenic | 40.0% | |
| TTTGCATAACCTGCTTCATG+AGG | + | chr6.1:76675945-76675964 | MS.gene064323:intron | 40.0% | |
| ! | ACATGGATTGACGGTGAATT+TGG | + | chr6.1:76675730-76675749 | MS.gene064323:intron | 40.0% |
| ! | CAAGTGCATACATGGATTGA+CGG | + | chr6.1:76675721-76675740 | MS.gene064323:intron | 40.0% |
| ! | GTCTACCATTTAGGACTGTA+TGG | - | chr6.1:76675400-76675419 | None:intergenic | 40.0% |
| ! | TGATGTACTTCTTGTTGTGG+GGG | - | chr6.1:76677441-76677460 | None:intergenic | 40.0% |
| ! | TTTGGCATGATGTTTGAGAC+AGG | + | chr6.1:76675555-76675574 | MS.gene064323:intron | 40.0% |
| !! | AAAATTGGCCTTTGAAGGAG+TGG | + | chr6.1:76677109-76677128 | MS.gene064323:intron | 40.0% |
| !! | TAAAGGGTGGATTGGATCTA+AGG | + | chr6.1:76674897-76674916 | MS.gene064323:CDS | 40.0% |
| !! | TGCTGTTTGTGGGTTTGTTT+TGG | + | chr6.1:76674999-76675018 | MS.gene064323:CDS | 40.0% |
| !!! | CAGGCCTAGAACTTTTTTGA+CGG | + | chr6.1:76676857-76676876 | MS.gene064323:intron | 40.0% |
| !!! | GGGGTTTGTTTTTGTGATCT+TGG | - | chr6.1:76674685-76674704 | None:intergenic | 40.0% |
| ATCGAAATGGAGTTTCGAGG+AGG | + | chr6.1:76674962-76674981 | MS.gene064323:CDS | 45.0% | |
| CATCCCTCTTGTCTTGGATT+TGG | + | chr6.1:76675537-76675556 | MS.gene064323:intron | 45.0% | |
| CATGCCAAATCCAAGACAAG+AGG | - | chr6.1:76675544-76675563 | None:intergenic | 45.0% | |
| CGGAAATGTTGTAGGCAAGT+TGG | + | chr6.1:76677369-76677388 | MS.gene064323:CDS | 45.0% | |
| CTTATGTCTGTAAGCTCACC+AGG | + | chr6.1:76676707-76676726 | MS.gene064323:intron | 45.0% | |
| GAAGGTGAATCCATTGGACT+TGG | - | chr6.1:76674772-76674791 | None:intergenic | 45.0% | |
| GCTAAGCACGAAAAATGGCA+GGG | - | chr6.1:76676022-76676041 | None:intergenic | 45.0% | |
| GGAAGCAAGGTTCCATTGTA+TGG | + | chr6.1:76677271-76677290 | MS.gene064323:CDS | 45.0% | |
| GTGATCGAAATGGAGTTTCG+AGG | + | chr6.1:76674959-76674978 | MS.gene064323:CDS | 45.0% | |
| TATACCTTGACACTGAGCTG+AGG | - | chr6.1:76675075-76675094 | None:intergenic | 45.0% | |
| TATTGACAGACACTGTTCGG+CGG | - | chr6.1:76677246-76677265 | None:intergenic | 45.0% | |
| TCGAAATGGAGTTTCGAGGA+GGG | + | chr6.1:76674963-76674982 | MS.gene064323:CDS | 45.0% | |
| TCGACGCTAAGCACGAAAAA+TGG | - | chr6.1:76676027-76676046 | None:intergenic | 45.0% | |
| TCTGATCTTACAGTTGCGAC+CGG | + | chr6.1:76676531-76676550 | MS.gene064323:CDS | 45.0% | |
| TGAAGCAAGTAGCCAATGCA+AGG | - | chr6.1:76675106-76675125 | None:intergenic | 45.0% | |
| !! | ATGTTGTAGGCAAGTTGGTG+AGG | + | chr6.1:76677374-76677393 | MS.gene064323:CDS | 45.0% |
| !! | GTCTTTGAAGTTAAGTCGCG+CGG | + | chr6.1:76677349-76677368 | MS.gene064323:CDS | 45.0% |
| !! | TGCACTTTGGAGCTTCAAAG+AGG | + | chr6.1:76675792-76675811 | MS.gene064323:intron | 45.0% |
| !!! | CTATTTTTGCGACCCGTGAT+TGG | - | chr6.1:76676073-76676092 | None:intergenic | 45.0% |
| AAGGTTCCATTGTATGGCGC+TGG | + | chr6.1:76677277-76677296 | MS.gene064323:CDS | 50.0% | |
| AAGTCGCGCGGAAATGTTGT+AGG | + | chr6.1:76677361-76677380 | MS.gene064323:CDS | 50.0% | |
| ATACAACGCCCTCATGAAGC+AGG | - | chr6.1:76675957-76675976 | None:intergenic | 50.0% | |
| CAAACCTCAGCTCAGTGTCA+AGG | + | chr6.1:76675068-76675087 | MS.gene064323:CDS | 50.0% | |
| CAATCCAAACATGCACCGAG+TGG | + | chr6.1:76675850-76675869 | MS.gene064323:intron | 50.0% | |
| CGCTAAGCACGAAAAATGGC+AGG | - | chr6.1:76676023-76676042 | None:intergenic | 50.0% | |
| GAGGCAAAGGATACACCACT+CGG | - | chr6.1:76675868-76675887 | None:intergenic | 50.0% | |
| TGGTGCAGATGTTGCTAGCT+CGG | + | chr6.1:76677297-76677316 | MS.gene064323:CDS | 50.0% | |
| ! | CTTCTTGTTGTGGGGGTCAA+CGG | - | chr6.1:76677434-76677453 | None:intergenic | 50.0% |
| ! | GTTGCTAGCTCGGTGAACAA+CGG | + | chr6.1:76677307-76677326 | MS.gene064323:CDS | 50.0% |
| !! | TACACCACTCGGTGCATGTT+TGG | - | chr6.1:76675857-76675876 | None:intergenic | 50.0% |
| !! | TGCTTCATGAGGGCGTTGTA+TGG | + | chr6.1:76675956-76675975 | MS.gene064323:intron | 50.0% |
| GGAGAAGGGTCAGATGTCAC+TGG | + | chr6.1:76676399-76676418 | MS.gene064323:CDS | 55.0% | |
| TCTGCACCAGCGCCATACAA+TGG | - | chr6.1:76677286-76677305 | None:intergenic | 55.0% | |
| TCTTACAGTTGCGACCGGCG+AGG | + | chr6.1:76676536-76676555 | MS.gene064323:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 76674634 | 76677495 | 76674634 | ID=MS.gene064323 |
| chr6.1 | mRNA | 76674634 | 76677495 | 76674634 | ID=MS.gene064323.t1;Parent=MS.gene064323 |
| chr6.1 | exon | 76674634 | 76675089 | 76674634 | ID=MS.gene064323.t1.exon1;Parent=MS.gene064323.t1 |
| chr6.1 | CDS | 76674634 | 76675089 | 76674634 | ID=cds.MS.gene064323.t1;Parent=MS.gene064323.t1 |
| chr6.1 | exon | 76676372 | 76676557 | 76676372 | ID=MS.gene064323.t1.exon2;Parent=MS.gene064323.t1 |
| chr6.1 | CDS | 76676372 | 76676557 | 76676372 | ID=cds.MS.gene064323.t1;Parent=MS.gene064323.t1 |
| chr6.1 | exon | 76677214 | 76677495 | 76677214 | ID=MS.gene064323.t1.exon3;Parent=MS.gene064323.t1 |
| chr6.1 | CDS | 76677214 | 76677495 | 76677214 | ID=cds.MS.gene064323.t1;Parent=MS.gene064323.t1 |
| Gene Sequence |
| Protein sequence |
