Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064493.t1 | XP_003616242.1 | 96.1 | 388 | 13 | 1 | 1 | 386 | 1 | 388 | 2.00E-215 | 758.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064493.t1 | G7KG13 | 96.1 | 388 | 13 | 1 | 1 | 386 | 1 | 388 | 1.5e-215 | 758.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051158 | MS.gene064493 | 0.820096 | 8.22E-53 | -1.69E-46 |
| MS.gene051385 | MS.gene064493 | 0.830645 | 2.61E-55 | -1.69E-46 |
| MS.gene051996 | MS.gene064493 | 0.811271 | 7.61E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene064493 | 0.802451 | 5.58E-49 | -1.69E-46 |
| MS.gene052223 | MS.gene064493 | 0.814363 | 1.60E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene064493 | 0.805604 | 1.23E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene064493 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene064493 | 0.805782 | 1.13E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene064493 | 0.839116 | 1.92E-57 | -1.69E-46 |
| MS.gene054742 | MS.gene064493 | 0.847177 | 1.36E-59 | -1.69E-46 |
| MS.gene056330 | MS.gene064493 | 0.843633 | 1.24E-58 | -1.69E-46 |
| MS.gene056691 | MS.gene064493 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene064493 | 0.826332 | 2.87E-54 | -1.69E-46 |
| MS.gene059892 | MS.gene064493 | 0.813605 | 2.35E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene064493 | 0.830759 | 2.45E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064493.t1 | MTR_5g077710 | 97.680 | 388 | 7 | 1 | 1 | 386 | 1 | 388 | 0.0 | 774 |
| MS.gene064493.t1 | MTR_2g028610 | 51.081 | 370 | 174 | 3 | 13 | 382 | 96 | 458 | 1.75e-138 | 403 |
| MS.gene064493.t1 | MTR_2g028590 | 49.459 | 370 | 180 | 2 | 13 | 382 | 101 | 463 | 1.90e-134 | 392 |
| MS.gene064493.t1 | MTR_1g024005 | 42.813 | 327 | 173 | 7 | 62 | 383 | 108 | 425 | 9.03e-90 | 277 |
| MS.gene064493.t1 | MTR_8g028460 | 40.120 | 334 | 183 | 5 | 61 | 381 | 156 | 485 | 3.82e-87 | 272 |
| MS.gene064493.t1 | MTR_3g113270 | 41.104 | 326 | 180 | 8 | 62 | 383 | 103 | 420 | 2.03e-85 | 266 |
| MS.gene064493.t1 | MTR_0010s0400 | 40.708 | 339 | 192 | 5 | 43 | 381 | 127 | 456 | 1.40e-84 | 265 |
| MS.gene064493.t1 | MTR_4g094572 | 43.144 | 299 | 148 | 7 | 92 | 382 | 91 | 375 | 9.48e-71 | 226 |
| MS.gene064493.t1 | MTR_3g071050 | 41.117 | 197 | 108 | 6 | 62 | 256 | 75 | 265 | 3.55e-41 | 146 |
| MS.gene064493.t1 | MTR_3g070620 | 45.455 | 132 | 67 | 4 | 192 | 320 | 59 | 188 | 3.86e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064493.t1 | AT3G05390 | 41.994 | 331 | 183 | 5 | 51 | 381 | 138 | 459 | 4.93e-91 | 281 |
| MS.gene064493.t1 | AT4G01240 | 41.193 | 352 | 187 | 8 | 43 | 381 | 310 | 654 | 1.40e-88 | 281 |
| MS.gene064493.t1 | AT5G40830 | 42.988 | 328 | 168 | 9 | 61 | 383 | 100 | 413 | 3.98e-85 | 265 |
| MS.gene064493.t1 | AT5G40830 | 42.988 | 328 | 168 | 9 | 61 | 383 | 100 | 413 | 3.98e-85 | 265 |
| MS.gene064493.t1 | AT3G27230 | 42.547 | 322 | 172 | 6 | 62 | 383 | 101 | 409 | 1.58e-82 | 258 |
| MS.gene064493.t1 | AT1G29790 | 40.753 | 292 | 151 | 7 | 92 | 381 | 104 | 375 | 1.15e-72 | 231 |
| MS.gene064493.t1 | AT1G29790 | 40.753 | 292 | 151 | 7 | 92 | 381 | 104 | 375 | 1.15e-72 | 231 |
| MS.gene064493.t1 | AT5G40830 | 37.615 | 327 | 149 | 5 | 60 | 383 | 99 | 373 | 1.55e-72 | 231 |
Find 126 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAATTGGAGAATGTTTA+TGG | 0.187015 | 5.3:+62925076 | MS.gene064493:CDS |
| GGTATGGGCGGTGGGAAATT+TGG | 0.220420 | 5.3:-62924500 | None:intergenic |
| TTATGAGGTTTGTGAATAAA+AGG | 0.274720 | 5.3:-62924130 | None:intergenic |
| AAGAAAGTTAAGTGGGTTAC+TGG | 0.275293 | 5.3:+62925124 | MS.gene064493:CDS |
| TTTGTTGTTTGATGTTTATA+GGG | 0.284105 | 5.3:+62925003 | MS.gene064493:CDS |
| TTAGACCTGGTGGGTTGTTT+TGG | 0.290537 | 5.3:+62925029 | MS.gene064493:CDS |
| TGATAAGGGACCTCAATTTC+AGG | 0.291988 | 5.3:+62925156 | MS.gene064493:CDS |
| AATGTACCTTTCTGCTTTGT+TGG | 0.311264 | 5.3:+62925180 | MS.gene064493:CDS |
| AAATCTAGACCGTTTGATCT+AGG | 0.311564 | 5.3:-62924692 | None:intergenic |
| GAAGCTATGAAGCTATTAAA+AGG | 0.313502 | 5.3:-62924857 | None:intergenic |
| GTGGTGGTGGTTGTAAAATT+TGG | 0.315722 | 5.3:-62924194 | None:intergenic |
| GAAGGGAAGGGTATGGGCGG+TGG | 0.317394 | 5.3:-62924509 | None:intergenic |
| TCTCAAAGACTCCTCCTAAA+AGG | 0.341204 | 5.3:+62924434 | MS.gene064493:CDS |
| TGAAGAGTAAATTGGTGGTT+AGG | 0.345505 | 5.3:-62924100 | None:intergenic |
| TACCCTTCCCTTCCAGTCTC+TGG | 0.366031 | 5.3:+62924519 | MS.gene064493:CDS |
| CGGCAACGGCGGCGAGGGAG+AGG | 0.371397 | 5.3:-62924464 | None:intergenic |
| TGCGAAATACTCATGTATAA+AGG | 0.374905 | 5.3:-62924893 | None:intergenic |
| GAGGGAAATGAAGAGTAAAT+TGG | 0.387100 | 5.3:-62924108 | None:intergenic |
| GAGGTGGAGGCAAAGAATTC+CGG | 0.397834 | 5.3:-62924260 | None:intergenic |
| GTCTTCAACGGCGGTGGCTG+TGG | 0.403735 | 5.3:-62924213 | None:intergenic |
| CGGTGTCGGAGTTGAAGTTT+CGG | 0.405953 | 5.3:-62924310 | None:intergenic |
| GAAGAGTAAATTGGTGGTTA+GGG | 0.414291 | 5.3:-62924099 | None:intergenic |
| TAAACCGATTCGAACCGAAC+CGG | 0.422920 | 5.3:-62924747 | None:intergenic |
| GTGCATGCGCTGCCGGCGGG+AGG | 0.428866 | 5.3:-62924338 | None:intergenic |
| CCCTCGCCGCCGTTGCCGTC+CGG | 0.429922 | 5.3:+62924469 | MS.gene064493:CDS |
| AACGGCGGTGGCTGTGGTGG+TGG | 0.430884 | 5.3:-62924207 | None:intergenic |
| TGCATGCGCTGCCGGCGGGA+GGG | 0.436930 | 5.3:-62924337 | None:intergenic |
| ATTCACCATGAATCCTTGAA+TGG | 0.436986 | 5.3:-62925208 | None:intergenic |
| AGAAACACGTGAACCCGGTT+CGG | 0.438918 | 5.3:+62924733 | MS.gene064493:CDS |
| GGGAAATTTGGTGGTGCTGC+CGG | 0.442209 | 5.3:-62924488 | None:intergenic |
| AACCCTACACTTTCAATCAT+AGG | 0.442677 | 5.3:-62925100 | None:intergenic |
| AGGGTGCATGCGCTGCCGGC+GGG | 0.455390 | 5.3:-62924341 | None:intergenic |
| GATCCCCAACACAAAAGAAA+TGG | 0.457855 | 5.3:-62925057 | None:intergenic |
| ACAACGTCGTTAAACTTAAA+CGG | 0.460143 | 5.3:+62924833 | MS.gene064493:CDS |
| AGAAGCCATTCAAGGATTCA+TGG | 0.463717 | 5.3:+62925203 | MS.gene064493:CDS |
| AAAGAGGGTGCATGCGCTGC+CGG | 0.465186 | 5.3:-62924345 | None:intergenic |
| GGCGGGAGGGTGGACGGTGT+CGG | 0.467004 | 5.3:-62924324 | None:intergenic |
| GTGGTGCTGCCGGACGGCAA+CGG | 0.467282 | 5.3:-62924478 | None:intergenic |
| AATCTAGACCGTTTGATCTA+GGG | 0.468716 | 5.3:-62924691 | None:intergenic |
| AGCGCTGTCTTCAACGGCGG+TGG | 0.470998 | 5.3:-62924219 | None:intergenic |
| AGCCTCTCTGCGTGCGGGAA+CGG | 0.472387 | 5.3:-62924610 | None:intergenic |
| GACCTATGATTGAAAGTGTA+GGG | 0.472579 | 5.3:+62925098 | MS.gene064493:CDS |
| CCGGACGGCAACGGCGGCGA+GGG | 0.472795 | 5.3:-62924469 | None:intergenic |
| GTTCGAATCGGTTTAGACAT+AGG | 0.474512 | 5.3:+62924755 | MS.gene064493:CDS |
| TACTGGGAAGAAGCTTGATA+AGG | 0.475551 | 5.3:+62925141 | MS.gene064493:CDS |
| AGGTACATTTCCTGAAATTG+AGG | 0.476525 | 5.3:-62925166 | None:intergenic |
| GCCGGACGGCAACGGCGGCG+AGG | 0.478129 | 5.3:-62924470 | None:intergenic |
| CCACACGACGGAGGAATTTG+AGG | 0.479902 | 5.3:-62924549 | None:intergenic |
| TTTGTTGGAGAAGCCATTCA+AGG | 0.482535 | 5.3:+62925195 | MS.gene064493:CDS |
| TAGGGTTTAAGAAAGTTAAG+TGG | 0.485340 | 5.3:+62925116 | MS.gene064493:CDS |
| GAGACTGGAAGGGAAGGGTA+TGG | 0.487371 | 5.3:-62924516 | None:intergenic |
| TTGATCTAGGGTTTGTCCAA+CGG | 0.488488 | 5.3:-62924679 | None:intergenic |
| TGAGAGAGAATCTCGTCGTC+TGG | 0.489539 | 5.3:-62924416 | None:intergenic |
| ACTGGGAAGAAGCTTGATAA+GGG | 0.494358 | 5.3:+62925142 | MS.gene064493:CDS |
| TTGGTGTACAAGTGGAGGAA+TGG | 0.497681 | 5.3:-62924175 | None:intergenic |
| TGCGGATATCGTCGGGAAAG+AGG | 0.501843 | 5.3:-62924361 | None:intergenic |
| AAACCGATTCGAACCGAACC+GGG | 0.503587 | 5.3:-62924746 | None:intergenic |
| GCTGCCGGCGGGAGGGTGGA+CGG | 0.510419 | 5.3:-62924330 | None:intergenic |
| ATGAAGCTGCGGATATCGTC+GGG | 0.512073 | 5.3:-62924368 | None:intergenic |
| GAACCCGGTTCGGTTCGAAT+CGG | 0.512939 | 5.3:+62924743 | MS.gene064493:CDS |
| TTCAACGGCGGTGGCTGTGG+TGG | 0.515739 | 5.3:-62924210 | None:intergenic |
| AGACTGGAAGGGAAGGGTAT+GGG | 0.518468 | 5.3:-62924515 | None:intergenic |
| TATAGGGTTCTTAGACCTGG+TGG | 0.518659 | 5.3:+62925019 | MS.gene064493:CDS |
| ATCAAAGCCTCTCTGCGTGC+GGG | 0.522942 | 5.3:-62924615 | None:intergenic |
| GTTTATAGGGTTCTTAGACC+TGG | 0.523866 | 5.3:+62925016 | MS.gene064493:CDS |
| ATAGGGTTCTTAGACCTGGT+GGG | 0.524499 | 5.3:+62925020 | MS.gene064493:CDS |
| CTGGAAGGGAAGGGTATGGG+CGG | 0.527631 | 5.3:-62924512 | None:intergenic |
| GGTGCTTCTCGCGGCCGTTG+AGG | 0.528072 | 5.3:-62924658 | None:intergenic |
| AGGAAAGAAAGAGTGTTATG+AGG | 0.530138 | 5.3:-62924145 | None:intergenic |
| AGAAAGTTAAGTGGGTTACT+GGG | 0.530570 | 5.3:+62925125 | MS.gene064493:CDS |
| GAGGGTGCATGCGCTGCCGG+CGG | 0.531697 | 5.3:-62924342 | None:intergenic |
| ACAAGTGGAGGAATGGTAAG+TGG | 0.533615 | 5.3:-62924168 | None:intergenic |
| AGGGTTTAAGAAAGTTAAGT+GGG | 0.534205 | 5.3:+62925117 | MS.gene064493:CDS |
| GCCAGCGCTGTCTTCAACGG+CGG | 0.535578 | 5.3:-62924222 | None:intergenic |
| ATGGGCGGTGGGAAATTTGG+TGG | 0.535874 | 5.3:-62924497 | None:intergenic |
| AAGGGAAGGGTATGGGCGGT+GGG | 0.538227 | 5.3:-62924508 | None:intergenic |
| GGTGTAGACCAGAGACTGGA+AGG | 0.545576 | 5.3:-62924527 | None:intergenic |
| TGGTGGAGTAGCAACTTTCG+CGG | 0.547029 | 5.3:+62924778 | MS.gene064493:CDS |
| TGTAAAATTTGGTGTACAAG+TGG | 0.547597 | 5.3:-62924183 | None:intergenic |
| TGGACAAACCCTAGATCAAA+CGG | 0.551753 | 5.3:+62924683 | MS.gene064493:CDS |
| GAGGTTTGTGAATAAAAGGA+GGG | 0.554209 | 5.3:-62924126 | None:intergenic |
| CATGAAGCTGCGGATATCGT+CGG | 0.555173 | 5.3:-62924369 | None:intergenic |
| CCAATTACTCAAAACATGCA+TGG | 0.556759 | 5.3:-62924957 | None:intergenic |
| GCGGATATCGTCGGGAAAGA+GGG | 0.558600 | 5.3:-62924360 | None:intergenic |
| GTCGCCAGCGCTGTCTTCAA+CGG | 0.559058 | 5.3:-62924225 | None:intergenic |
| TGAGGTTTGTGAATAAAAGG+AGG | 0.564210 | 5.3:-62924127 | None:intergenic |
| ATCGGTTTAGACATAGGTGG+TGG | 0.566020 | 5.3:+62924761 | MS.gene064493:CDS |
| CATCAAAGCCTCTCTGCGTG+CGG | 0.569344 | 5.3:-62924616 | None:intergenic |
| AAAATTTGGTGTACAAGTGG+AGG | 0.570105 | 5.3:-62924180 | None:intergenic |
| GGACCTATGATTGAAAGTGT+AGG | 0.571785 | 5.3:+62925097 | MS.gene064493:CDS |
| ATGCGCTGCCGGCGGGAGGG+TGG | 0.573167 | 5.3:-62924334 | None:intergenic |
| TTGTCCAACGGTGCTTCTCG+CGG | 0.575905 | 5.3:-62924667 | None:intergenic |
| ACGGCCGCGAGAAGCACCGT+TGG | 0.579438 | 5.3:+62924663 | MS.gene064493:CDS |
| TGAGGGTGTAGACCAGAGAC+TGG | 0.583150 | 5.3:-62924531 | None:intergenic |
| AAGTTTCGGTTGAAACCTAG+TGG | 0.586759 | 5.3:-62924296 | None:intergenic |
| GGAAATGAAGAGTAAATTGG+TGG | 0.593617 | 5.3:-62924105 | None:intergenic |
| GACCAGAGACTGGAAGGGAA+GGG | 0.593673 | 5.3:-62924521 | None:intergenic |
| ACCGCCGTTGAAGACAGCGC+TGG | 0.594417 | 5.3:+62924221 | MS.gene064493:CDS |
| ACATGATCCGTTCACGTCGT+AGG | 0.599038 | 5.3:-62924393 | None:intergenic |
| CACACGACGGAGGAATTTGA+GGG | 0.599747 | 5.3:-62924548 | None:intergenic |
| ATAGCTTCATAGCTTCAAGA+GGG | 0.600391 | 5.3:+62924864 | MS.gene064493:CDS |
| AATTTGGTGGTGCTGCCGGA+CGG | 0.603595 | 5.3:-62924484 | None:intergenic |
| AATAGCTTCATAGCTTCAAG+AGG | 0.604135 | 5.3:+62924863 | MS.gene064493:CDS |
| GACACCGTCCACCCTCCCGC+CGG | 0.604663 | 5.3:+62924326 | MS.gene064493:CDS |
| GTGGAGGCAAAGAATTCCGG+TGG | 0.608664 | 5.3:-62924257 | None:intergenic |
| TTCATGTCCTACGACGTGAA+CGG | 0.613712 | 5.3:+62924386 | MS.gene064493:CDS |
| AGACCAGAGACTGGAAGGGA+AGG | 0.613712 | 5.3:-62924522 | None:intergenic |
| CCTCAAATTCCTCCGTCGTG+TGG | 0.615734 | 5.3:+62924549 | MS.gene064493:CDS |
| TATACATGAGTATTTCGCAA+CGG | 0.616135 | 5.3:+62924897 | MS.gene064493:CDS |
| GTGCTGCCGGACGGCAACGG+CGG | 0.616600 | 5.3:-62924475 | None:intergenic |
| GCTTCTCCAACAAAGCAGAA+AGG | 0.617751 | 5.3:-62925186 | None:intergenic |
| GTGTAGACCAGAGACTGGAA+GGG | 0.619328 | 5.3:-62924526 | None:intergenic |
| TCCAACCAAAACAACCCACC+AGG | 0.633677 | 5.3:-62925034 | None:intergenic |
| GTAGGATTTGCATGTGTAAG+CGG | 0.635626 | 5.3:-62924573 | None:intergenic |
| AGTTTCGGTTGAAACCTAGT+GGG | 0.640219 | 5.3:-62924295 | None:intergenic |
| AGTGGAGGAATGGTAAGTGG+AGG | 0.642457 | 5.3:-62924165 | None:intergenic |
| GACCGTTCCCGCACGCAGAG+AGG | 0.647820 | 5.3:+62924608 | MS.gene064493:CDS |
| CGAATCGGTTTAGACATAGG+TGG | 0.657680 | 5.3:+62924758 | MS.gene064493:CDS |
| TGGCGACAGTAACCTCCCAC+CGG | 0.659388 | 5.3:+62924241 | MS.gene064493:CDS |
| TAGCTTCATAGCTTCAAGAG+GGG | 0.664954 | 5.3:+62924865 | MS.gene064493:CDS |
| ACGGTCAATGAGACACGTGT+AGG | 0.665828 | 5.3:-62924591 | None:intergenic |
| AGGCAAAGAATTCCGGTGGG+AGG | 0.675859 | 5.3:-62924253 | None:intergenic |
| CGTCGTAGGACATGAAGCTG+CGG | 0.691105 | 5.3:-62924379 | None:intergenic |
| TGTGTAAGCGGTCCACACGA+CGG | 0.695478 | 5.3:-62924561 | None:intergenic |
| TGGAGGCAAAGAATTCCGGT+GGG | 0.719672 | 5.3:-62924256 | None:intergenic |
| GTAAGCGGTCCACACGACGG+AGG | 0.732499 | 5.3:-62924558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTGTTTGATGTTTATA+GGG | + | chr5.3:62925003-62925022 | MS.gene064493:CDS | 20.0% |
| !!! | TTTTGTTGTTTGATGTTTAT+AGG | + | chr5.3:62925002-62925021 | MS.gene064493:CDS | 20.0% |
| ! | AAAAAATGAAGCAATGTTTC+AGG | - | chr5.3:62924986-62925005 | None:intergenic | 25.0% |
| ! | TTATGAGGTTTGTGAATAAA+AGG | - | chr5.3:62924133-62924152 | None:intergenic | 25.0% |
| !! | TCCAAAGTGTTATCAAAAAA+CGG | - | chr5.3:62924926-62924945 | None:intergenic | 25.0% |
| ACAACGTCGTTAAACTTAAA+CGG | + | chr5.3:62924833-62924852 | MS.gene064493:CDS | 30.0% | |
| AGGGTTTAAGAAAGTTAAGT+GGG | + | chr5.3:62925117-62925136 | MS.gene064493:CDS | 30.0% | |
| GAAGCTATGAAGCTATTAAA+AGG | - | chr5.3:62924860-62924879 | None:intergenic | 30.0% | |
| GATCAATTGGAGAATGTTTA+TGG | + | chr5.3:62925076-62925095 | MS.gene064493:CDS | 30.0% | |
| TAGGGTTTAAGAAAGTTAAG+TGG | + | chr5.3:62925116-62925135 | MS.gene064493:CDS | 30.0% | |
| TATACATGAGTATTTCGCAA+CGG | + | chr5.3:62924897-62924916 | MS.gene064493:CDS | 30.0% | |
| TGCGAAATACTCATGTATAA+AGG | - | chr5.3:62924896-62924915 | None:intergenic | 30.0% | |
| !! | TGTAAAATTTGGTGTACAAG+TGG | - | chr5.3:62924186-62924205 | None:intergenic | 30.0% |
| !!! | TCCGTTTTTTGATAACACTT+TGG | + | chr5.3:62924922-62924941 | MS.gene064493:CDS | 30.0% |
| AAATCTAGACCGTTTGATCT+AGG | - | chr5.3:62924695-62924714 | None:intergenic | 35.0% | |
| AACCCTACACTTTCAATCAT+AGG | - | chr5.3:62925103-62925122 | None:intergenic | 35.0% | |
| AATAGCTTCATAGCTTCAAG+AGG | + | chr5.3:62924863-62924882 | MS.gene064493:CDS | 35.0% | |
| AATCTAGACCGTTTGATCTA+GGG | - | chr5.3:62924694-62924713 | None:intergenic | 35.0% | |
| AATGTACCTTTCTGCTTTGT+TGG | + | chr5.3:62925180-62925199 | MS.gene064493:CDS | 35.0% | |
| AGGTACATTTCCTGAAATTG+AGG | - | chr5.3:62925169-62925188 | None:intergenic | 35.0% | |
| ATAGCTTCATAGCTTCAAGA+GGG | + | chr5.3:62924864-62924883 | MS.gene064493:CDS | 35.0% | |
| CCAATTACTCAAAACATGCA+TGG | - | chr5.3:62924960-62924979 | None:intergenic | 35.0% | |
| GAGGGAAATGAAGAGTAAAT+TGG | - | chr5.3:62924111-62924130 | None:intergenic | 35.0% | |
| GAGGTTTGTGAATAAAAGGA+GGG | - | chr5.3:62924129-62924148 | None:intergenic | 35.0% | |
| GGAAATGAAGAGTAAATTGG+TGG | - | chr5.3:62924108-62924127 | None:intergenic | 35.0% | |
| TGAGGTTTGTGAATAAAAGG+AGG | - | chr5.3:62924130-62924149 | None:intergenic | 35.0% | |
| ! | GAAGAGTAAATTGGTGGTTA+GGG | - | chr5.3:62924102-62924121 | None:intergenic | 35.0% |
| ! | GACCTATGATTGAAAGTGTA+GGG | + | chr5.3:62925098-62925117 | MS.gene064493:CDS | 35.0% |
| ! | TGAAGAGTAAATTGGTGGTT+AGG | - | chr5.3:62924103-62924122 | None:intergenic | 35.0% |
| ! | TGGACCATTTCTTTTGTGTT+GGG | + | chr5.3:62925053-62925072 | MS.gene064493:CDS | 35.0% |
| ! | TTGGACCATTTCTTTTGTGT+TGG | + | chr5.3:62925052-62925071 | MS.gene064493:CDS | 35.0% |
| !! | AAAATTTGGTGTACAAGTGG+AGG | - | chr5.3:62924183-62924202 | None:intergenic | 35.0% |
| !! | AAATTGGTGGTTAGGGTTTT+TGG | - | chr5.3:62924095-62924114 | None:intergenic | 35.0% |
| !! | AAGAAAGTTAAGTGGGTTAC+TGG | + | chr5.3:62925124-62925143 | MS.gene064493:CDS | 35.0% |
| !! | AGAAAGTTAAGTGGGTTACT+GGG | + | chr5.3:62925125-62925144 | MS.gene064493:CDS | 35.0% |
| !! | AGGAAAGAAAGAGTGTTATG+AGG | - | chr5.3:62924148-62924167 | None:intergenic | 35.0% |
| !! | CCATGCATGTTTTGAGTAAT+TGG | + | chr5.3:62924957-62924976 | MS.gene064493:CDS | 35.0% |
| !! | TGGTTAGGGTTTTTGGATTA+GGG | - | chr5.3:62924088-62924107 | None:intergenic | 35.0% |
| !!! | AAAGACTGTTTTGACCTCAA+CGG | + | chr5.3:62924644-62924663 | MS.gene064493:CDS | 35.0% |
| AAGTTTCGGTTGAAACCTAG+TGG | - | chr5.3:62924299-62924318 | None:intergenic | 40.0% | |
| ACTGGGAAGAAGCTTGATAA+GGG | + | chr5.3:62925142-62925161 | MS.gene064493:CDS | 40.0% | |
| AGAAGCCATTCAAGGATTCA+TGG | + | chr5.3:62925203-62925222 | MS.gene064493:CDS | 40.0% | |
| AGTTTCGGTTGAAACCTAGT+GGG | - | chr5.3:62924298-62924317 | None:intergenic | 40.0% | |
| GATCCCCAACACAAAAGAAA+TGG | - | chr5.3:62925060-62925079 | None:intergenic | 40.0% | |
| GTAGGATTTGCATGTGTAAG+CGG | - | chr5.3:62924576-62924595 | None:intergenic | 40.0% | |
| GTTTATAGGGTTCTTAGACC+TGG | + | chr5.3:62925016-62925035 | MS.gene064493:CDS | 40.0% | |
| TACTGGGAAGAAGCTTGATA+AGG | + | chr5.3:62925141-62925160 | MS.gene064493:CDS | 40.0% | |
| TAGCTTCATAGCTTCAAGAG+GGG | + | chr5.3:62924865-62924884 | MS.gene064493:CDS | 40.0% | |
| TCTCAAAGACTCCTCCTAAA+AGG | + | chr5.3:62924434-62924453 | MS.gene064493:CDS | 40.0% | |
| TGATAAGGGACCTCAATTTC+AGG | + | chr5.3:62925156-62925175 | MS.gene064493:CDS | 40.0% | |
| TGGACAAACCCTAGATCAAA+CGG | + | chr5.3:62924683-62924702 | MS.gene064493:CDS | 40.0% | |
| TTTGTTGGAGAAGCCATTCA+AGG | + | chr5.3:62925195-62925214 | MS.gene064493:CDS | 40.0% | |
| ! | AAACCTAGTGGGAGTTTTTG+TGG | - | chr5.3:62924287-62924306 | None:intergenic | 40.0% |
| ! | CTTTTGTGTTGGGGATCAAT+TGG | + | chr5.3:62925063-62925082 | MS.gene064493:CDS | 40.0% |
| ! | GGACCATTTCTTTTGTGTTG+GGG | + | chr5.3:62925054-62925073 | MS.gene064493:CDS | 40.0% |
| ! | GGACCTATGATTGAAAGTGT+AGG | + | chr5.3:62925097-62925116 | MS.gene064493:CDS | 40.0% |
| ! | GTTCGAATCGGTTTAGACAT+AGG | + | chr5.3:62924755-62924774 | MS.gene064493:CDS | 40.0% |
| ! | TTGATCTAGGGTTTGTCCAA+CGG | - | chr5.3:62924682-62924701 | None:intergenic | 40.0% |
| !! | GTGGTGGTGGTTGTAAAATT+TGG | - | chr5.3:62924197-62924216 | None:intergenic | 40.0% |
| !! | GTGGTTAGGGTTTTTGGATT+AGG | - | chr5.3:62924089-62924108 | None:intergenic | 40.0% |
| !!! | GTTTTAGAAACACGTGAACC+CGG | + | chr5.3:62924728-62924747 | MS.gene064493:CDS | 40.0% |
| ACAAGTGGAGGAATGGTAAG+TGG | - | chr5.3:62924171-62924190 | None:intergenic | 45.0% | |
| ATAGGGTTCTTAGACCTGGT+GGG | + | chr5.3:62925020-62925039 | MS.gene064493:CDS | 45.0% | |
| GCTTCTCCAACAAAGCAGAA+AGG | - | chr5.3:62925189-62925208 | None:intergenic | 45.0% | |
| TATAGGGTTCTTAGACCTGG+TGG | + | chr5.3:62925019-62925038 | MS.gene064493:CDS | 45.0% | |
| TCACCACAAAAACTCCCACT+AGG | + | chr5.3:62924281-62924300 | MS.gene064493:CDS | 45.0% | |
| TTCATGTCCTACGACGTGAA+CGG | + | chr5.3:62924386-62924405 | MS.gene064493:CDS | 45.0% | |
| TTGGTGTACAAGTGGAGGAA+TGG | - | chr5.3:62924178-62924197 | None:intergenic | 45.0% | |
| ! | ATCGGTTTAGACATAGGTGG+TGG | + | chr5.3:62924761-62924780 | MS.gene064493:CDS | 45.0% |
| ! | CGAATCGGTTTAGACATAGG+TGG | + | chr5.3:62924758-62924777 | MS.gene064493:CDS | 45.0% |
| ! | TAGTGGGAGTTTTTGTGGTG+AGG | - | chr5.3:62924282-62924301 | None:intergenic | 45.0% |
| !! | TAAACCGATTCGAACCGAAC+CGG | - | chr5.3:62924750-62924769 | None:intergenic | 45.0% |
| !!! | TTAGACCTGGTGGGTTGTTT+TGG | + | chr5.3:62925029-62925048 | MS.gene064493:CDS | 45.0% |
| ACATGATCCGTTCACGTCGT+AGG | - | chr5.3:62924396-62924415 | None:intergenic | 50.0% | |
| ACGGTCAATGAGACACGTGT+AGG | - | chr5.3:62924594-62924613 | None:intergenic | 50.0% | |
| AGAAACACGTGAACCCGGTT+CGG | + | chr5.3:62924733-62924752 | MS.gene064493:CDS | 50.0% | |
| AGTGGAGGAATGGTAAGTGG+AGG | - | chr5.3:62924168-62924187 | None:intergenic | 50.0% | |
| ATGAAGCTGCGGATATCGTC+GGG | - | chr5.3:62924371-62924390 | None:intergenic | 50.0% | |
| CACACGACGGAGGAATTTGA+GGG | - | chr5.3:62924551-62924570 | None:intergenic | 50.0% | |
| CATGAAGCTGCGGATATCGT+CGG | - | chr5.3:62924372-62924391 | None:intergenic | 50.0% | |
| GAGGTGGAGGCAAAGAATTC+CGG | - | chr5.3:62924263-62924282 | None:intergenic | 50.0% | |
| GTGTAGACCAGAGACTGGAA+GGG | - | chr5.3:62924529-62924548 | None:intergenic | 50.0% | |
| TCCAACCAAAACAACCCACC+AGG | - | chr5.3:62925037-62925056 | None:intergenic | 50.0% | |
| TGAGAGAGAATCTCGTCGTC+TGG | - | chr5.3:62924419-62924438 | None:intergenic | 50.0% | |
| TGGAGGCAAAGAATTCCGGT+GGG | - | chr5.3:62924259-62924278 | None:intergenic | 50.0% | |
| TGGTGGAGTAGCAACTTTCG+CGG | + | chr5.3:62924778-62924797 | MS.gene064493:CDS | 50.0% | |
| ! | AGACTGGAAGGGAAGGGTAT+GGG | - | chr5.3:62924518-62924537 | None:intergenic | 50.0% |
| ! | CGGTGTCGGAGTTGAAGTTT+CGG | - | chr5.3:62924313-62924332 | None:intergenic | 50.0% |
| ! | GAGTTTTTGTGGTGAGGTGG+AGG | - | chr5.3:62924276-62924295 | None:intergenic | 50.0% |
| ! | TGGGAGTTTTTGTGGTGAGG+TGG | - | chr5.3:62924279-62924298 | None:intergenic | 50.0% |
| !! | AAACCGATTCGAACCGAACC+GGG | - | chr5.3:62924749-62924768 | None:intergenic | 50.0% |
| !!! | ACCTGGTGGGTTGTTTTGGT+TGG | + | chr5.3:62925033-62925052 | MS.gene064493:CDS | 50.0% |
| AGACCAGAGACTGGAAGGGA+AGG | - | chr5.3:62924525-62924544 | None:intergenic | 55.0% | |
| AGGCAAAGAATTCCGGTGGG+AGG | - | chr5.3:62924256-62924275 | None:intergenic | 55.0% | |
| ATCAAAGCCTCTCTGCGTGC+GGG | - | chr5.3:62924618-62924637 | None:intergenic | 55.0% | |
| ATGGGCGGTGGGAAATTTGG+TGG | - | chr5.3:62924500-62924519 | None:intergenic | 55.0% | |
| CATCAAAGCCTCTCTGCGTG+CGG | - | chr5.3:62924619-62924638 | None:intergenic | 55.0% | |
| CCACACGACGGAGGAATTTG+AGG | - | chr5.3:62924552-62924571 | None:intergenic | 55.0% | |
| CCTCAAATTCCTCCGTCGTG+TGG | + | chr5.3:62924549-62924568 | MS.gene064493:CDS | 55.0% | |
| CGTCGTAGGACATGAAGCTG+CGG | - | chr5.3:62924382-62924401 | None:intergenic | 55.0% | |
| GACCAGAGACTGGAAGGGAA+GGG | - | chr5.3:62924524-62924543 | None:intergenic | 55.0% | |
| GAGACTGGAAGGGAAGGGTA+TGG | - | chr5.3:62924519-62924538 | None:intergenic | 55.0% | |
| GCGGATATCGTCGGGAAAGA+GGG | - | chr5.3:62924363-62924382 | None:intergenic | 55.0% | |
| GGTATGGGCGGTGGGAAATT+TGG | - | chr5.3:62924503-62924522 | None:intergenic | 55.0% | |
| GGTGTAGACCAGAGACTGGA+AGG | - | chr5.3:62924530-62924549 | None:intergenic | 55.0% | |
| GTGGAGGCAAAGAATTCCGG+TGG | - | chr5.3:62924260-62924279 | None:intergenic | 55.0% | |
| TACCCTTCCCTTCCAGTCTC+TGG | + | chr5.3:62924519-62924538 | MS.gene064493:CDS | 55.0% | |
| TGCGGATATCGTCGGGAAAG+AGG | - | chr5.3:62924364-62924383 | None:intergenic | 55.0% | |
| TGTGTAAGCGGTCCACACGA+CGG | - | chr5.3:62924564-62924583 | None:intergenic | 55.0% | |
| TTGTCCAACGGTGCTTCTCG+CGG | - | chr5.3:62924670-62924689 | None:intergenic | 55.0% | |
| ! | TGAGGGTGTAGACCAGAGAC+TGG | - | chr5.3:62924534-62924553 | None:intergenic | 55.0% |
| !! | AATTTGGTGGTGCTGCCGGA+CGG | - | chr5.3:62924487-62924506 | None:intergenic | 55.0% |
| !! | GAACCCGGTTCGGTTCGAAT+CGG | + | chr5.3:62924743-62924762 | MS.gene064493:CDS | 55.0% |
| !! | GGGAAATTTGGTGGTGCTGC+CGG | - | chr5.3:62924491-62924510 | None:intergenic | 55.0% |
| GTCGCCAGCGCTGTCTTCAA+CGG | - | chr5.3:62924228-62924247 | None:intergenic | 60.0% | |
| TGGCGACAGTAACCTCCCAC+CGG | + | chr5.3:62924241-62924260 | MS.gene064493:CDS | 60.0% | |
| ! | AAAGAGGGTGCATGCGCTGC+CGG | - | chr5.3:62924348-62924367 | None:intergenic | 60.0% |
| ! | AAGGGAAGGGTATGGGCGGT+GGG | - | chr5.3:62924511-62924530 | None:intergenic | 60.0% |
| ! | CTGGAAGGGAAGGGTATGGG+CGG | - | chr5.3:62924515-62924534 | None:intergenic | 60.0% |
| ! | GAGGCTCGCAGCCTTTTAGG+AGG | - | chr5.3:62924448-62924467 | None:intergenic | 60.0% |
| ! | GGAGAGGCTCGCAGCCTTTT+AGG | - | chr5.3:62924451-62924470 | None:intergenic | 60.0% |
| ACCGCCGTTGAAGACAGCGC+TGG | + | chr5.3:62924221-62924240 | MS.gene064493:CDS | 65.0% | |
| AGCCTCTCTGCGTGCGGGAA+CGG | - | chr5.3:62924613-62924632 | None:intergenic | 65.0% | |
| AGCGCTGTCTTCAACGGCGG+TGG | - | chr5.3:62924222-62924241 | None:intergenic | 65.0% | |
| GCCAGCGCTGTCTTCAACGG+CGG | - | chr5.3:62924225-62924244 | None:intergenic | 65.0% | |
| GTAAGCGGTCCACACGACGG+AGG | - | chr5.3:62924561-62924580 | None:intergenic | 65.0% | |
| GTCTTCAACGGCGGTGGCTG+TGG | - | chr5.3:62924216-62924235 | None:intergenic | 65.0% | |
| TTCAACGGCGGTGGCTGTGG+TGG | - | chr5.3:62924213-62924232 | None:intergenic | 65.0% | |
| ! | GAAGGGAAGGGTATGGGCGG+TGG | - | chr5.3:62924512-62924531 | None:intergenic | 65.0% |
| AACGGCGGTGGCTGTGGTGG+TGG | - | chr5.3:62924210-62924229 | None:intergenic | 70.0% | |
| GACCGTTCCCGCACGCAGAG+AGG | + | chr5.3:62924608-62924627 | MS.gene064493:CDS | 70.0% | |
| GGTGCTTCTCGCGGCCGTTG+AGG | - | chr5.3:62924661-62924680 | None:intergenic | 70.0% | |
| !! | ACGGCCGCGAGAAGCACCGT+TGG | + | chr5.3:62924663-62924682 | MS.gene064493:CDS | 70.0% |
| !! | GTGGTGCTGCCGGACGGCAA+CGG | - | chr5.3:62924481-62924500 | None:intergenic | 70.0% |
| AGGGTGCATGCGCTGCCGGC+GGG | - | chr5.3:62924344-62924363 | None:intergenic | 75.0% | |
| GACACCGTCCACCCTCCCGC+CGG | + | chr5.3:62924326-62924345 | MS.gene064493:CDS | 75.0% | |
| GGCGGGAGGGTGGACGGTGT+CGG | - | chr5.3:62924327-62924346 | None:intergenic | 75.0% | |
| GTGCTGCCGGACGGCAACGG+CGG | - | chr5.3:62924478-62924497 | None:intergenic | 75.0% | |
| TGCATGCGCTGCCGGCGGGA+GGG | - | chr5.3:62924340-62924359 | None:intergenic | 75.0% | |
| ! | GAGGGTGCATGCGCTGCCGG+CGG | - | chr5.3:62924345-62924364 | None:intergenic | 75.0% |
| ! | ATGCGCTGCCGGCGGGAGGG+TGG | - | chr5.3:62924337-62924356 | None:intergenic | 80.0% |
| ! | CCCTCGCCGCCGTTGCCGTC+CGG | + | chr5.3:62924469-62924488 | MS.gene064493:CDS | 80.0% |
| ! | CCGGACGGCAACGGCGGCGA+GGG | - | chr5.3:62924472-62924491 | None:intergenic | 80.0% |
| ! | CGGCAACGGCGGCGAGGGAG+AGG | - | chr5.3:62924467-62924486 | None:intergenic | 80.0% |
| ! | GCTGCCGGCGGGAGGGTGGA+CGG | - | chr5.3:62924333-62924352 | None:intergenic | 80.0% |
| ! | GTGCATGCGCTGCCGGCGGG+AGG | - | chr5.3:62924341-62924360 | None:intergenic | 80.0% |
| ! | GCCGGACGGCAACGGCGGCG+AGG | - | chr5.3:62924473-62924492 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 62924068 | 62925228 | 62924068 | ID=MS.gene064493 |
| chr5.3 | mRNA | 62924068 | 62925228 | 62924068 | ID=MS.gene064493.t1;Parent=MS.gene064493 |
| chr5.3 | exon | 62924068 | 62925228 | 62924068 | ID=MS.gene064493.t1.exon1;Parent=MS.gene064493.t1 |
| chr5.3 | CDS | 62924068 | 62925228 | 62924068 | ID=cds.MS.gene064493.t1;Parent=MS.gene064493.t1 |
| Gene Sequence |
| Protein sequence |
