Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065087.t1 | RHN82474.1 | 92.4 | 594 | 11 | 1 | 1 | 560 | 1190 | 1783 | 3.10E-305 | 1057 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065087.t1 | A0A072VRG7 | 92.4 | 594 | 11 | 1 | 1 | 560 | 1 | 594 | 2.2e-305 | 1057.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051044 | MS.gene065087 | 0.818236 | 2.18E-52 | -1.69E-46 |
| MS.gene051959 | MS.gene065087 | 0.807182 | 5.73E-50 | -1.69E-46 |
| MS.gene051960 | MS.gene065087 | 0.808899 | 2.47E-50 | -1.69E-46 |
| MS.gene052053 | MS.gene065087 | 0.805905 | 1.07E-49 | -1.69E-46 |
| MS.gene052566 | MS.gene065087 | 0.806641 | 7.45E-50 | -1.69E-46 |
| MS.gene053826 | MS.gene065087 | 0.800322 | 1.52E-48 | -1.69E-46 |
| MS.gene054056 | MS.gene065087 | 0.83356 | 4.97E-56 | -1.69E-46 |
| MS.gene055549 | MS.gene065087 | 0.800879 | 1.17E-48 | -1.69E-46 |
| MS.gene055550 | MS.gene065087 | 0.811727 | 6.06E-51 | -1.69E-46 |
| MS.gene055942 | MS.gene065087 | 0.844 | 9.91E-59 | -1.69E-46 |
| MS.gene056761 | MS.gene065087 | 0.809518 | 1.82E-50 | -1.69E-46 |
| MS.gene057001 | MS.gene065087 | 0.827527 | 1.49E-54 | -1.69E-46 |
| MS.gene058628 | MS.gene065087 | 0.864689 | 1.01E-64 | -1.69E-46 |
| MS.gene058629 | MS.gene065087 | 0.87211 | 4.09E-67 | -1.69E-46 |
| MS.gene058630 | MS.gene065087 | 0.859394 | 4.26E-63 | -1.69E-46 |
| MS.gene05884 | MS.gene065087 | 0.801295 | 9.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065087.t1 | MTR_1g111540 | 92.424 | 594 | 11 | 1 | 1 | 560 | 1 | 594 | 0.0 | 1074 |
| MS.gene065087.t1 | MTR_1g111510 | 91.414 | 594 | 17 | 1 | 1 | 560 | 1 | 594 | 0.0 | 1063 |
| MS.gene065087.t1 | MTR_1g111530 | 86.449 | 583 | 45 | 1 | 6 | 554 | 2 | 584 | 0.0 | 991 |
| MS.gene065087.t1 | MTR_1g111550 | 68.143 | 587 | 144 | 5 | 12 | 559 | 11 | 593 | 0.0 | 786 |
| MS.gene065087.t1 | MTR_7g102880 | 57.993 | 588 | 195 | 7 | 16 | 553 | 19 | 604 | 0.0 | 638 |
| MS.gene065087.t1 | MTR_1g050550 | 54.899 | 592 | 212 | 6 | 10 | 549 | 8 | 596 | 0.0 | 628 |
| MS.gene065087.t1 | MTR_1g059080 | 52.840 | 581 | 229 | 4 | 10 | 552 | 8 | 581 | 0.0 | 602 |
| MS.gene065087.t1 | MTR_2g100400 | 33.746 | 566 | 294 | 7 | 20 | 532 | 1 | 538 | 7.89e-96 | 302 |
| MS.gene065087.t1 | MTR_5g090570 | 30.657 | 548 | 314 | 8 | 26 | 532 | 11 | 533 | 7.57e-86 | 276 |
| MS.gene065087.t1 | MTR_7g029015 | 33.103 | 580 | 312 | 12 | 15 | 522 | 1 | 576 | 1.15e-84 | 275 |
| MS.gene065087.t1 | MTR_3g099150 | 31.915 | 564 | 304 | 12 | 21 | 523 | 10 | 554 | 3.07e-79 | 259 |
| MS.gene065087.t1 | MTR_4g073690 | 32.902 | 541 | 299 | 9 | 26 | 523 | 15 | 534 | 1.43e-76 | 252 |
| MS.gene065087.t1 | MTR_4g116210 | 31.541 | 558 | 311 | 11 | 27 | 523 | 12 | 559 | 6.19e-73 | 243 |
| MS.gene065087.t1 | MTR_2g450710 | 30.645 | 558 | 309 | 10 | 27 | 523 | 13 | 553 | 5.33e-70 | 235 |
| MS.gene065087.t1 | MTR_5g022380 | 30.125 | 561 | 313 | 10 | 21 | 538 | 8 | 532 | 1.63e-65 | 223 |
| MS.gene065087.t1 | MTR_5g022380 | 31.579 | 456 | 267 | 9 | 92 | 538 | 3 | 422 | 1.39e-57 | 199 |
| MS.gene065087.t1 | MTR_4g073690 | 32.225 | 391 | 210 | 8 | 26 | 373 | 15 | 393 | 1.35e-44 | 162 |
| MS.gene065087.t1 | MTR_2g104250 | 31.441 | 229 | 114 | 5 | 295 | 523 | 104 | 289 | 4.44e-30 | 120 |
| MS.gene065087.t1 | MTR_5g095240 | 69.014 | 71 | 22 | 0 | 459 | 529 | 2 | 72 | 8.26e-27 | 103 |
| MS.gene065087.t1 | MTR_7g083660 | 23.684 | 570 | 362 | 14 | 26 | 536 | 7 | 562 | 6.45e-22 | 100 |
| MS.gene065087.t1 | MTR_5g026350 | 23.304 | 575 | 364 | 14 | 26 | 535 | 7 | 569 | 1.14e-20 | 96.3 |
| MS.gene065087.t1 | MTR_3g466040 | 23.593 | 551 | 341 | 13 | 15 | 523 | 1 | 513 | 2.03e-15 | 79.3 |
| MS.gene065087.t1 | MTR_3g466110 | 22.593 | 509 | 322 | 10 | 24 | 492 | 5 | 481 | 1.98e-12 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065087.t1 | AT2G39210 | 66.497 | 588 | 150 | 3 | 13 | 553 | 8 | 595 | 0.0 | 772 |
| MS.gene065087.t1 | AT2G28120 | 58.076 | 551 | 194 | 3 | 20 | 535 | 11 | 559 | 0.0 | 634 |
| MS.gene065087.t1 | AT1G74780 | 32.927 | 574 | 284 | 9 | 20 | 533 | 1 | 533 | 7.79e-93 | 294 |
| MS.gene065087.t1 | AT1G18940 | 32.793 | 555 | 285 | 9 | 18 | 523 | 1 | 516 | 1.40e-86 | 278 |
| MS.gene065087.t1 | AT2G34350 | 31.016 | 561 | 297 | 9 | 20 | 529 | 1 | 522 | 2.60e-84 | 272 |
| MS.gene065087.t1 | AT2G34350 | 31.016 | 561 | 297 | 9 | 20 | 529 | 1 | 522 | 2.60e-84 | 272 |
| MS.gene065087.t1 | AT5G50520 | 32.784 | 546 | 295 | 10 | 22 | 522 | 12 | 530 | 5.06e-84 | 271 |
| MS.gene065087.t1 | AT5G50630 | 32.784 | 546 | 295 | 10 | 22 | 522 | 12 | 530 | 5.06e-84 | 271 |
| MS.gene065087.t1 | AT2G34355 | 31.194 | 561 | 288 | 10 | 23 | 529 | 4 | 520 | 9.36e-83 | 268 |
| MS.gene065087.t1 | AT5G14120 | 32.180 | 578 | 317 | 11 | 20 | 531 | 10 | 578 | 2.94e-81 | 265 |
| MS.gene065087.t1 | AT4G34950 | 31.522 | 552 | 306 | 11 | 26 | 522 | 16 | 550 | 1.00e-77 | 256 |
| MS.gene065087.t1 | AT3G01930 | 30.517 | 580 | 327 | 10 | 22 | 532 | 12 | 584 | 1.90e-77 | 256 |
| MS.gene065087.t1 | AT2G16660 | 32.523 | 535 | 304 | 9 | 26 | 522 | 14 | 529 | 8.38e-73 | 242 |
| MS.gene065087.t1 | AT1G80530 | 29.443 | 557 | 307 | 11 | 27 | 523 | 14 | 544 | 4.15e-64 | 219 |
| MS.gene065087.t1 | AT3G01930 | 30.462 | 476 | 289 | 9 | 92 | 532 | 3 | 471 | 6.58e-63 | 214 |
| MS.gene065087.t1 | AT2G34355 | 31.477 | 413 | 227 | 7 | 129 | 529 | 2 | 370 | 2.44e-62 | 209 |
| MS.gene065087.t1 | AT3G01930 | 29.187 | 418 | 223 | 8 | 22 | 370 | 12 | 425 | 8.33e-42 | 156 |
| MS.gene065087.t1 | AT2G16660 | 31.783 | 387 | 214 | 9 | 26 | 373 | 14 | 389 | 3.14e-40 | 150 |
| MS.gene065087.t1 | AT3G01630 | 23.303 | 545 | 348 | 15 | 26 | 523 | 41 | 562 | 5.63e-22 | 100 |
| MS.gene065087.t1 | AT3G01630 | 23.303 | 545 | 348 | 15 | 26 | 523 | 23 | 544 | 7.07e-22 | 99.8 |
| MS.gene065087.t1 | AT5G45275 | 23.944 | 568 | 344 | 14 | 26 | 523 | 7 | 556 | 5.22e-21 | 97.4 |
| MS.gene065087.t1 | AT4G19450 | 22.913 | 563 | 358 | 13 | 26 | 523 | 7 | 558 | 2.02e-20 | 95.5 |
| MS.gene065087.t1 | AT1G31470 | 21.646 | 559 | 374 | 14 | 26 | 544 | 43 | 577 | 1.66e-18 | 89.4 |
| MS.gene065087.t1 | AT4G19450 | 22.963 | 405 | 244 | 9 | 26 | 366 | 7 | 407 | 3.13e-14 | 75.5 |
Find 95 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACTTTGTATAATTT+TGG | 0.150653 | 1.2:+82567327 | MS.gene065087:CDS |
| AACACATCTTCCCACCATTT+TGG | 0.178261 | 1.2:-82566871 | None:intergenic |
| TGAATCTCGTGGAGCGGTTT+TGG | 0.179701 | 1.2:+82566369 | MS.gene065087:CDS |
| TATGTAGCTTCAGTGATTAT+TGG | 0.228672 | 1.2:+82567237 | MS.gene065087:CDS |
| TTGTGTCTTTAGTAAGTATT+TGG | 0.250564 | 1.2:+82567067 | MS.gene065087:CDS |
| GTGTGAAACTACTATTCTTC+TGG | 0.254372 | 1.2:-82566639 | None:intergenic |
| GGTAATTCCATTGGTGTTCA+TGG | 0.287263 | 1.2:+82565926 | MS.gene065087:CDS |
| TCCATTGGTGTTCATGGTTT+AGG | 0.309919 | 1.2:+82565932 | MS.gene065087:CDS |
| AAAGGCTATGTTGGTCTTAG+TGG | 0.334364 | 1.2:+82566400 | MS.gene065087:CDS |
| AAAACCGCTCCACGAGATTC+AGG | 0.337223 | 1.2:-82566367 | None:intergenic |
| ACCACCGTCCGGTGATGAAT+TGG | 0.352452 | 1.2:-82565976 | None:intergenic |
| GTAAGTATTTGGAATTATCT+AGG | 0.353475 | 1.2:+82567078 | MS.gene065087:CDS |
| TATGTTTCACTTGGTCTAGC+TGG | 0.356602 | 1.2:+82566592 | MS.gene065087:CDS |
| TTAACGGCAATTGATAATCT+TGG | 0.358953 | 1.2:+82566997 | MS.gene065087:CDS |
| CTTGGAAAGCATAGAATAGA+AGG | 0.363836 | 1.2:+82567441 | MS.gene065087:CDS |
| AGTTTCACACAGGGTGAGTT+TGG | 0.364101 | 1.2:+82566652 | MS.gene065087:CDS |
| TCGACAAGTTAATGAGCTTA+AGG | 0.376160 | 1.2:+82566552 | MS.gene065087:CDS |
| AGCTCATTAACTTGTCGAAC+AGG | 0.383560 | 1.2:-82566547 | None:intergenic |
| CTATTTGTGGCATGTATTTG+TGG | 0.387438 | 1.2:+82566961 | MS.gene065087:CDS |
| TGGTCTAGCTGGATTCTTGT+TGG | 0.399810 | 1.2:+82566603 | MS.gene065087:CDS |
| GTGGCATGTATTTGTGGTGT+TGG | 0.412454 | 1.2:+82566967 | MS.gene065087:CDS |
| AGATATGTTGATACTATTTG+TGG | 0.416529 | 1.2:+82566948 | MS.gene065087:CDS |
| AGAGTTAAAGTAAGCATAAG+AGG | 0.426460 | 1.2:-82567159 | None:intergenic |
| CTCCAGCGGCTGCCATGATT+AGG | 0.431429 | 1.2:-82566018 | None:intergenic |
| CAAAGAAGCTAAGAAACAAT+TGG | 0.433049 | 1.2:+82567413 | MS.gene065087:CDS |
| TCATTGAAGAGAACAAGATT+TGG | 0.435135 | 1.2:+82566728 | MS.gene065087:CDS |
| AGCAACGTTGGTGTTCTTGC+AGG | 0.437111 | 1.2:+82566139 | MS.gene065087:CDS |
| GTACAGAGAAGAAGCTGAAA+TGG | 0.437234 | 1.2:+82567605 | MS.gene065087:CDS |
| AACTCTCTTTGTCTCATGTG+TGG | 0.452502 | 1.2:+82567176 | MS.gene065087:CDS |
| TGGTGTTGGTGGAACTTTAA+CGG | 0.460287 | 1.2:+82566981 | MS.gene065087:CDS |
| ACTCTCTTTGTCTCATGTGT+GGG | 0.462025 | 1.2:+82567177 | MS.gene065087:CDS |
| GGAATTCTTAAAGGCTATGT+TGG | 0.464341 | 1.2:+82566391 | MS.gene065087:CDS |
| ATTGATAATCTTGGTCAGAT+AGG | 0.465696 | 1.2:+82567006 | MS.gene065087:CDS |
| TTTCGCCTCCTTCCTAATCA+TGG | 0.475895 | 1.2:+82566006 | MS.gene065087:CDS |
| TTCCTAATCATGGCAGCCGC+TGG | 0.478289 | 1.2:+82566016 | MS.gene065087:CDS |
| TAAGGAGGTTTAGTGTACTT+TGG | 0.479046 | 1.2:-82566096 | None:intergenic |
| GCTGGAGCCACCTACATGTT+CGG | 0.483161 | 1.2:+82566034 | MS.gene065087:CDS |
| AATTTCTTGTATGTTTCACT+TGG | 0.485779 | 1.2:+82566583 | MS.gene065087:CDS |
| ATGGCGGTTGGTAATTCCAT+TGG | 0.489991 | 1.2:+82565917 | MS.gene065087:CDS |
| CCTTCTGTTACTATTTGCAC+TGG | 0.490393 | 1.2:-82566784 | None:intergenic |
| GGAAGTGTAGCAAGTCCACT+TGG | 0.498928 | 1.2:+82567348 | MS.gene065087:CDS |
| GCACATCAAATGCTATCAAA+AGG | 0.500092 | 1.2:-82567203 | None:intergenic |
| GCATGTATTTGTGGTGTTGG+TGG | 0.506795 | 1.2:+82566970 | MS.gene065087:CDS |
| CAACGAGCTCTATCCACCTT+GGG | 0.507861 | 1.2:+82566168 | MS.gene065087:CDS |
| AACTGTAACTGAAACAGAAA+AGG | 0.518256 | 1.2:+82566810 | MS.gene065087:CDS |
| AAAGCAAAAGAAATAGCAGC+AGG | 0.519094 | 1.2:-82566499 | None:intergenic |
| TTCTTTGTCATACAAATGAC+CGG | 0.519336 | 1.2:-82567397 | None:intergenic |
| TATTGTATAATCATCACCTC+TGG | 0.521894 | 1.2:-82566905 | None:intergenic |
| GTTACTATTTGCACTGGTGA+AGG | 0.536206 | 1.2:-82566778 | None:intergenic |
| AACAGGTTTCATATATCGAA+TGG | 0.538846 | 1.2:-82566530 | None:intergenic |
| AAACCGCTCCACGAGATTCA+GGG | 0.539064 | 1.2:-82566366 | None:intergenic |
| AAGAAACAATTGGAAGCACT+TGG | 0.542138 | 1.2:+82567423 | MS.gene065087:CDS |
| ACAGAGGAAGATGACAAAGT+TGG | 0.548475 | 1.2:+82567651 | MS.gene065087:CDS |
| GTATAATCATCACCTCTGGC+TGG | 0.551037 | 1.2:-82566901 | None:intergenic |
| AAGAATTTCCCTGAATCTCG+TGG | 0.557284 | 1.2:+82566358 | MS.gene065087:CDS |
| TCCTAAACCATGAACACCAA+TGG | 0.558988 | 1.2:-82565933 | None:intergenic |
| GAAGCTACATAGAGACCCTC+TGG | 0.561994 | 1.2:-82567225 | None:intergenic |
| TGCAGCGGTAATAATAATGA+AGG | 0.565571 | 1.2:-82567505 | None:intergenic |
| TAATCATCACCTCTGGCTGG+TGG | 0.569807 | 1.2:-82566898 | None:intergenic |
| GTTTGGTTTAAGTGCTGCTG+TGG | 0.571063 | 1.2:+82566669 | MS.gene065087:CDS |
| GTACTTAATGTGAAGATCAC+CGG | 0.578608 | 1.2:+82567378 | MS.gene065087:CDS |
| TCAACGAGCTCTATCCACCT+TGG | 0.580814 | 1.2:+82566167 | MS.gene065087:CDS |
| GGGCATGAATTGAATTGTGT+TGG | 0.581328 | 1.2:+82567462 | MS.gene065087:CDS |
| TCAATGAAAACAACGGCAAG+TGG | 0.581784 | 1.2:-82566712 | None:intergenic |
| AGCGGCTGCCATGATTAGGA+AGG | 0.582384 | 1.2:-82566014 | None:intergenic |
| GAAAATGACGAACCACCGTC+CGG | 0.588466 | 1.2:-82565987 | None:intergenic |
| AAAGTAAGCATAAGAGGACG+AGG | 0.591288 | 1.2:-82567153 | None:intergenic |
| CTCACTGTCCAATTCATCAC+CGG | 0.597382 | 1.2:+82565968 | MS.gene065087:CDS |
| GAAGAATAGTAGTTTCACAC+AGG | 0.608304 | 1.2:+82566642 | MS.gene065087:CDS |
| CAGAGAAGAAGCTGAAATGG+TGG | 0.612740 | 1.2:+82567608 | MS.gene065087:CDS |
| GTTCTCTTCAATGAAAACAA+CGG | 0.618801 | 1.2:-82566719 | None:intergenic |
| GGCTGCCATGATTAGGAAGG+AGG | 0.620969 | 1.2:-82566011 | None:intergenic |
| GATAGCATTTGATGTGCCAG+AGG | 0.622156 | 1.2:+82567209 | MS.gene065087:CDS |
| ATAGCATTTGATGTGCCAGA+GGG | 0.623868 | 1.2:+82567210 | MS.gene065087:CDS |
| CCTATTGTTAAAACTACCCA+AGG | 0.629761 | 1.2:-82566184 | None:intergenic |
| GAAGTGTAGCAAGTCCACTT+GGG | 0.630096 | 1.2:+82567349 | MS.gene065087:CDS |
| AGAAGAAGCTGAAATGGTGG+AGG | 0.632991 | 1.2:+82567611 | MS.gene065087:CDS |
| TTAAGTACATATAACCCAAG+TGG | 0.640278 | 1.2:-82567363 | None:intergenic |
| TACATGTTCGGTCTATACTC+CGG | 0.641076 | 1.2:+82566046 | MS.gene065087:CDS |
| CCAGTGCAAATAGTAACAGA+AGG | 0.641583 | 1.2:+82566784 | MS.gene065087:CDS |
| TATTTATTATGATGACACAA+AGG | 0.646380 | 1.2:+82566450 | MS.gene065087:CDS |
| GAACATGTAGGTGGCTCCAG+CGG | 0.647188 | 1.2:-82566032 | None:intergenic |
| GGAGTATAGACCGAACATGT+AGG | 0.649476 | 1.2:-82566044 | None:intergenic |
| TTGGAAAGCATAGAATAGAA+GGG | 0.652646 | 1.2:+82567442 | MS.gene065087:CDS |
| TTTCCCTGAATCTCGTGGAG+CGG | 0.655768 | 1.2:+82566363 | MS.gene065087:CDS |
| CTGTCCAATTCATCACCGGA+CGG | 0.661899 | 1.2:+82565972 | MS.gene065087:CDS |
| ACAAAGGTGACATATACAAG+AGG | 0.662424 | 1.2:+82567583 | MS.gene065087:CDS |
| ATTGTTAAAACTACCCAAGG+TGG | 0.665582 | 1.2:-82566181 | None:intergenic |
| AGTTGGTCAACAGCAGCATG+TGG | 0.667095 | 1.2:+82567668 | MS.gene065087:CDS |
| GTGTTCAATCCACCAGCCAG+AGG | 0.678931 | 1.2:+82566889 | MS.gene065087:CDS |
| AAAGAACGTGGAAAAGACAG+AGG | 0.686229 | 1.2:+82567635 | MS.gene065087:CDS |
| TCCAATTCATCACCGGACGG+TGG | 0.689064 | 1.2:+82565975 | MS.gene065087:CDS |
| GTATAGACCGAACATGTAGG+TGG | 0.689369 | 1.2:-82566041 | None:intergenic |
| AAGAATAGTAGTTTCACACA+GGG | 0.699884 | 1.2:+82566643 | MS.gene065087:CDS |
| AATGGTGGAGGTAAAGAACG+TGG | 0.730173 | 1.2:+82567623 | MS.gene065087:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATTATGATGACACAA+AGG | + | chr1.2:82566450-82566469 | MS.gene065087:CDS | 20.0% |
| !!! | CAAAATCTTTGAAAAAACTA+AGG | - | chr1.2:82566117-82566136 | None:intergenic | 20.0% |
| !!! | CTTAGTTTTTTCAAAGATTT+TGG | + | chr1.2:82566115-82566134 | MS.gene065087:CDS | 20.0% |
| !!! | TATGCAACTTTGTATAATTT+TGG | + | chr1.2:82567327-82567346 | MS.gene065087:CDS | 20.0% |
| !!! | TTACTTTATGATTTGGTTAT+CGG | + | chr1.2:82566228-82566247 | MS.gene065087:intron | 20.0% |
| !!! | TTTTTGGTTACTTTATGATT+TGG | + | chr1.2:82566221-82566240 | MS.gene065087:intron | 20.0% |
| ! | AAAAAAAGATCCAAAATGGT+GGG | + | chr1.2:82566861-82566880 | MS.gene065087:CDS | 25.0% |
| ! | AATTTCTTGTATGTTTCACT+TGG | + | chr1.2:82566583-82566602 | MS.gene065087:CDS | 25.0% |
| ! | AGATATGTTGATACTATTTG+TGG | + | chr1.2:82566948-82566967 | MS.gene065087:CDS | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | + | chr1.2:82566286-82566305 | MS.gene065087:intron | 25.0% |
| ! | GATATAATGGCAAAAAGTAA+TGG | - | chr1.2:82567285-82567304 | None:intergenic | 25.0% |
| ! | TTGTGTCTTTAGTAAGTATT+TGG | + | chr1.2:82567067-82567086 | MS.gene065087:CDS | 25.0% |
| !! | AATCTTTGAAAAAACTAAGG+AGG | - | chr1.2:82566114-82566133 | None:intergenic | 25.0% |
| !! | GTAAGTATTTGGAATTATCT+AGG | + | chr1.2:82567078-82567097 | MS.gene065087:CDS | 25.0% |
| !! | TCCAAAAAGTTCTGATATAA+TGG | - | chr1.2:82567298-82567317 | None:intergenic | 25.0% |
| !!! | AAGGCTTTGATTTTGTTTAT+TGG | + | chr1.2:82566469-82566488 | MS.gene065087:CDS | 25.0% |
| !!! | CTTTGATTTTGTTTATTGGT+TGG | + | chr1.2:82566473-82566492 | MS.gene065087:CDS | 25.0% |
| !!! | GTGATTATTGGATTTTGTTT+TGG | + | chr1.2:82567249-82567268 | MS.gene065087:CDS | 25.0% |
| !!! | TGTTGTTTCACTTATTTTAG+TGG | + | chr1.2:82567542-82567561 | MS.gene065087:CDS | 25.0% |
| !!! | TTTTGGTCTTGCTATTTTTT+TGG | - | chr1.2:82566257-82566276 | None:intergenic | 25.0% |
| AAATAGCAAGACCAAAAGTT+TGG | + | chr1.2:82566260-82566279 | MS.gene065087:intron | 30.0% | |
| AACAGGTTTCATATATCGAA+TGG | - | chr1.2:82566533-82566552 | None:intergenic | 30.0% | |
| AACTGTAACTGAAACAGAAA+AGG | + | chr1.2:82566810-82566829 | MS.gene065087:CDS | 30.0% | |
| AAGAATAGTAGTTTCACACA+GGG | + | chr1.2:82566643-82566662 | MS.gene065087:CDS | 30.0% | |
| AGAGTTAAAGTAAGCATAAG+AGG | - | chr1.2:82567162-82567181 | None:intergenic | 30.0% | |
| CAAAAAAAGATCCAAAATGG+TGG | + | chr1.2:82566860-82566879 | MS.gene065087:CDS | 30.0% | |
| CAAAGAAGCTAAGAAACAAT+TGG | + | chr1.2:82567413-82567432 | MS.gene065087:CDS | 30.0% | |
| CTCCAAAAAAAGATCCAAAA+TGG | + | chr1.2:82566857-82566876 | MS.gene065087:CDS | 30.0% | |
| GTTCTCTTCAATGAAAACAA+CGG | - | chr1.2:82566722-82566741 | None:intergenic | 30.0% | |
| TATGTAGCTTCAGTGATTAT+TGG | + | chr1.2:82567237-82567256 | MS.gene065087:CDS | 30.0% | |
| TATTGTATAATCATCACCTC+TGG | - | chr1.2:82566908-82566927 | None:intergenic | 30.0% | |
| TCATTGAAGAGAACAAGATT+TGG | + | chr1.2:82566728-82566747 | MS.gene065087:CDS | 30.0% | |
| TTAAGTACATATAACCCAAG+TGG | - | chr1.2:82567366-82567385 | None:intergenic | 30.0% | |
| TTCTTTGTCATACAAATGAC+CGG | - | chr1.2:82567400-82567419 | None:intergenic | 30.0% | |
| ! | AGGACTAGAAAGTTTTACAA+AGG | + | chr1.2:82567567-82567586 | MS.gene065087:CDS | 30.0% |
| ! | ATTGATAATCTTGGTCAGAT+AGG | + | chr1.2:82567006-82567025 | MS.gene065087:CDS | 30.0% |
| ! | CACCATTTTGGATCTTTTTT+TGG | - | chr1.2:82566862-82566881 | None:intergenic | 30.0% |
| ! | GCCATTATATCAGAACTTTT+TGG | + | chr1.2:82567294-82567313 | MS.gene065087:CDS | 30.0% |
| ! | TTAACGGCAATTGATAATCT+TGG | + | chr1.2:82566997-82567016 | MS.gene065087:CDS | 30.0% |
| ! | TTGGAAAGCATAGAATAGAA+GGG | + | chr1.2:82567442-82567461 | MS.gene065087:CDS | 30.0% |
| !! | AAAGTGCTTATGCTTTTCTT+TGG | - | chr1.2:82567048-82567067 | None:intergenic | 30.0% |
| !!! | AAGTGTTGTTTTTATGTCAC+CGG | - | chr1.2:82566068-82566087 | None:intergenic | 30.0% |
| !!! | GGTGCTATACTAAACTTTTT+TGG | + | chr1.2:82566205-82566224 | MS.gene065087:intron | 30.0% |
| !!! | TTTCACTTATTTTAGTGGCT+AGG | + | chr1.2:82567547-82567566 | MS.gene065087:CDS | 30.0% |
| AAAGCAAAAGAAATAGCAGC+AGG | - | chr1.2:82566502-82566521 | None:intergenic | 35.0% | |
| ACAAAGGTGACATATACAAG+AGG | + | chr1.2:82567583-82567602 | MS.gene065087:CDS | 35.0% | |
| ATTGTTAAAACTACCCAAGG+TGG | - | chr1.2:82566184-82566203 | None:intergenic | 35.0% | |
| CCTATTGTTAAAACTACCCA+AGG | - | chr1.2:82566187-82566206 | None:intergenic | 35.0% | |
| CTATTTGTGGCATGTATTTG+TGG | + | chr1.2:82566961-82566980 | MS.gene065087:CDS | 35.0% | |
| GAAGAATAGTAGTTTCACAC+AGG | + | chr1.2:82566642-82566661 | MS.gene065087:CDS | 35.0% | |
| GCACATCAAATGCTATCAAA+AGG | - | chr1.2:82567206-82567225 | None:intergenic | 35.0% | |
| GGAATTCTTAAAGGCTATGT+TGG | + | chr1.2:82566391-82566410 | MS.gene065087:CDS | 35.0% | |
| GGTGACATAAAAACAACACT+TGG | + | chr1.2:82566067-82566086 | MS.gene065087:CDS | 35.0% | |
| GTACTTAATGTGAAGATCAC+CGG | + | chr1.2:82567378-82567397 | MS.gene065087:CDS | 35.0% | |
| GTGTGAAACTACTATTCTTC+TGG | - | chr1.2:82566642-82566661 | None:intergenic | 35.0% | |
| TAAGGAGGTTTAGTGTACTT+TGG | - | chr1.2:82566099-82566118 | None:intergenic | 35.0% | |
| TCGACAAGTTAATGAGCTTA+AGG | + | chr1.2:82566552-82566571 | MS.gene065087:CDS | 35.0% | |
| TGCAGCGGTAATAATAATGA+AGG | - | chr1.2:82567508-82567527 | None:intergenic | 35.0% | |
| ! | AGACACATTTGCCAAACTTT+TGG | - | chr1.2:82566274-82566293 | None:intergenic | 35.0% |
| ! | CTTGGAAAGCATAGAATAGA+AGG | + | chr1.2:82567441-82567460 | MS.gene065087:CDS | 35.0% |
| ! | GCAGAGTAAAAAACTAGCTT+TGG | + | chr1.2:82566750-82566769 | MS.gene065087:CDS | 35.0% |
| ! | TTCTCAGTCTTTTGCAAACA+CGG | + | chr1.2:82566315-82566334 | MS.gene065087:CDS | 35.0% |
| !! | AAAGATTTTGGTAGCAACGT+TGG | + | chr1.2:82566127-82566146 | MS.gene065087:CDS | 35.0% |
| !! | AAGAAACAATTGGAAGCACT+TGG | + | chr1.2:82567423-82567442 | MS.gene065087:CDS | 35.0% |
| !!! | ATTACCGCTGCAACATTTTT+TGG | + | chr1.2:82567516-82567535 | MS.gene065087:CDS | 35.0% |
| !!! | CCTTGGGTAGTTTTAACAAT+AGG | + | chr1.2:82566184-82566203 | MS.gene065087:CDS | 35.0% |
| !!! | GATTTTGTTTTGGTGCTCAA+TGG | + | chr1.2:82567259-82567278 | MS.gene065087:CDS | 35.0% |
| AAAGAACGTGGAAAAGACAG+AGG | + | chr1.2:82567635-82567654 | MS.gene065087:CDS | 40.0% | |
| AAAGTAAGCATAAGAGGACG+AGG | - | chr1.2:82567156-82567175 | None:intergenic | 40.0% | |
| AACTCTCTTTGTCTCATGTG+TGG | + | chr1.2:82567176-82567195 | MS.gene065087:CDS | 40.0% | |
| AAGAATTTCCCTGAATCTCG+TGG | + | chr1.2:82566358-82566377 | MS.gene065087:CDS | 40.0% | |
| ACAGAGGAAGATGACAAAGT+TGG | + | chr1.2:82567651-82567670 | MS.gene065087:CDS | 40.0% | |
| ACTCTCTTTGTCTCATGTGT+GGG | + | chr1.2:82567177-82567196 | MS.gene065087:CDS | 40.0% | |
| AGCACCAAAAAATGTTGCAG+CGG | - | chr1.2:82567523-82567542 | None:intergenic | 40.0% | |
| ATAGCATTTGATGTGCCAGA+GGG | + | chr1.2:82567210-82567229 | MS.gene065087:CDS | 40.0% | |
| CCAGTGCAAATAGTAACAGA+AGG | + | chr1.2:82566784-82566803 | MS.gene065087:CDS | 40.0% | |
| CCTTCTGTTACTATTTGCAC+TGG | - | chr1.2:82566787-82566806 | None:intergenic | 40.0% | |
| GGGCATGAATTGAATTGTGT+TGG | + | chr1.2:82567462-82567481 | MS.gene065087:CDS | 40.0% | |
| GTACAGAGAAGAAGCTGAAA+TGG | + | chr1.2:82567605-82567624 | MS.gene065087:CDS | 40.0% | |
| TACATGTTCGGTCTATACTC+CGG | + | chr1.2:82566046-82566065 | MS.gene065087:CDS | 40.0% | |
| TATGTTTCACTTGGTCTAGC+TGG | + | chr1.2:82566592-82566611 | MS.gene065087:CDS | 40.0% | |
| TCAATGAAAACAACGGCAAG+TGG | - | chr1.2:82566715-82566734 | None:intergenic | 40.0% | |
| TCCTAAACCATGAACACCAA+TGG | - | chr1.2:82565936-82565955 | None:intergenic | 40.0% | |
| ! | AACACATCTTCCCACCATTT+TGG | - | chr1.2:82566874-82566893 | None:intergenic | 40.0% |
| ! | GGTAATTCCATTGGTGTTCA+TGG | + | chr1.2:82565926-82565945 | MS.gene065087:CDS | 40.0% |
| ! | GTTACTATTTGCACTGGTGA+AGG | - | chr1.2:82566781-82566800 | None:intergenic | 40.0% |
| ! | TCCATTGGTGTTCATGGTTT+AGG | + | chr1.2:82565932-82565951 | MS.gene065087:CDS | 40.0% |
| ! | TCTCAGTCTTTTGCAAACAC+GGG | + | chr1.2:82566316-82566335 | MS.gene065087:CDS | 40.0% |
| !! | AAAGGCTATGTTGGTCTTAG+TGG | + | chr1.2:82566400-82566419 | MS.gene065087:CDS | 40.0% |
| !! | AGCTCATTAACTTGTCGAAC+AGG | - | chr1.2:82566550-82566569 | None:intergenic | 40.0% |
| !! | TATCTAGGACGTGTTTTCTC+AGG | + | chr1.2:82567093-82567112 | MS.gene065087:CDS | 40.0% |
| !! | TGGTGTTGGTGGAACTTTAA+CGG | + | chr1.2:82566981-82567000 | MS.gene065087:CDS | 40.0% |
| !!! | GCGGTTTTGGGAATTCTTAA+AGG | + | chr1.2:82566382-82566401 | MS.gene065087:CDS | 40.0% |
| AGAAGAAGCTGAAATGGTGG+AGG | + | chr1.2:82567611-82567630 | MS.gene065087:CDS | 45.0% | |
| AGTTTCACACAGGGTGAGTT+TGG | + | chr1.2:82566652-82566671 | MS.gene065087:CDS | 45.0% | |
| CAGAGAAGAAGCTGAAATGG+TGG | + | chr1.2:82567608-82567627 | MS.gene065087:CDS | 45.0% | |
| CTCACTGTCCAATTCATCAC+CGG | + | chr1.2:82565968-82565987 | MS.gene065087:CDS | 45.0% | |
| GAAGTGTAGCAAGTCCACTT+GGG | + | chr1.2:82567349-82567368 | MS.gene065087:CDS | 45.0% | |
| GATAGCATTTGATGTGCCAG+AGG | + | chr1.2:82567209-82567228 | MS.gene065087:CDS | 45.0% | |
| GGAGTATAGACCGAACATGT+AGG | - | chr1.2:82566047-82566066 | None:intergenic | 45.0% | |
| GTATAATCATCACCTCTGGC+TGG | - | chr1.2:82566904-82566923 | None:intergenic | 45.0% | |
| GTATAGACCGAACATGTAGG+TGG | - | chr1.2:82566044-82566063 | None:intergenic | 45.0% | |
| GTGGCATGTATTTGTGGTGT+TGG | + | chr1.2:82566967-82566986 | MS.gene065087:CDS | 45.0% | |
| TGGTCTAGCTGGATTCTTGT+TGG | + | chr1.2:82566603-82566622 | MS.gene065087:CDS | 45.0% | |
| TTTCGCCTCCTTCCTAATCA+TGG | + | chr1.2:82566006-82566025 | MS.gene065087:CDS | 45.0% | |
| ! | AATGGTGGAGGTAAAGAACG+TGG | + | chr1.2:82567623-82567642 | MS.gene065087:CDS | 45.0% |
| ! | GCATGTATTTGTGGTGTTGG+TGG | + | chr1.2:82566970-82566989 | MS.gene065087:CDS | 45.0% |
| ! | GTTTGGTTTAAGTGCTGCTG+TGG | + | chr1.2:82566669-82566688 | MS.gene065087:CDS | 45.0% |
| !! | ATGGCGGTTGGTAATTCCAT+TGG | + | chr1.2:82565917-82565936 | MS.gene065087:CDS | 45.0% |
| AAAACCGCTCCACGAGATTC+AGG | - | chr1.2:82566370-82566389 | None:intergenic | 50.0% | |
| AAACCGCTCCACGAGATTCA+GGG | - | chr1.2:82566369-82566388 | None:intergenic | 50.0% | |
| AGTTGGTCAACAGCAGCATG+TGG | + | chr1.2:82567668-82567687 | MS.gene065087:CDS | 50.0% | |
| CAACGAGCTCTATCCACCTT+GGG | + | chr1.2:82566168-82566187 | MS.gene065087:CDS | 50.0% | |
| CTGTCCAATTCATCACCGGA+CGG | + | chr1.2:82565972-82565991 | MS.gene065087:CDS | 50.0% | |
| GAAAATGACGAACCACCGTC+CGG | - | chr1.2:82565990-82566009 | None:intergenic | 50.0% | |
| GAAGCTACATAGAGACCCTC+TGG | - | chr1.2:82567228-82567247 | None:intergenic | 50.0% | |
| TAATCATCACCTCTGGCTGG+TGG | - | chr1.2:82566901-82566920 | None:intergenic | 50.0% | |
| TCAACGAGCTCTATCCACCT+TGG | + | chr1.2:82566167-82566186 | MS.gene065087:CDS | 50.0% | |
| TTTCCCTGAATCTCGTGGAG+CGG | + | chr1.2:82566363-82566382 | MS.gene065087:CDS | 50.0% | |
| ! | AGCAACGTTGGTGTTCTTGC+AGG | + | chr1.2:82566139-82566158 | MS.gene065087:CDS | 50.0% |
| ! | GAATCTCGTGGAGCGGTTTT+GGG | + | chr1.2:82566370-82566389 | MS.gene065087:CDS | 50.0% |
| ! | GGAAGTGTAGCAAGTCCACT+TGG | + | chr1.2:82567348-82567367 | MS.gene065087:CDS | 50.0% |
| ! | TGAATCTCGTGGAGCGGTTT+TGG | + | chr1.2:82566369-82566388 | MS.gene065087:CDS | 50.0% |
| ACCACCGTCCGGTGATGAAT+TGG | - | chr1.2:82565979-82565998 | None:intergenic | 55.0% | |
| AGCGGCTGCCATGATTAGGA+AGG | - | chr1.2:82566017-82566036 | None:intergenic | 55.0% | |
| GAACATGTAGGTGGCTCCAG+CGG | - | chr1.2:82566035-82566054 | None:intergenic | 55.0% | |
| GCTGGAGCCACCTACATGTT+CGG | + | chr1.2:82566034-82566053 | MS.gene065087:CDS | 55.0% | |
| GGCTGCCATGATTAGGAAGG+AGG | - | chr1.2:82566014-82566033 | None:intergenic | 55.0% | |
| GTGTTCAATCCACCAGCCAG+AGG | + | chr1.2:82566889-82566908 | MS.gene065087:CDS | 55.0% | |
| TCCAATTCATCACCGGACGG+TGG | + | chr1.2:82565975-82565994 | MS.gene065087:CDS | 55.0% | |
| TTCCTAATCATGGCAGCCGC+TGG | + | chr1.2:82566016-82566035 | MS.gene065087:CDS | 55.0% | |
| CTCCAGCGGCTGCCATGATT+AGG | - | chr1.2:82566021-82566040 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82565917 | 82567701 | 82565917 | ID=MS.gene065087 |
| chr1.2 | mRNA | 82565917 | 82567701 | 82565917 | ID=MS.gene065087.t1;Parent=MS.gene065087 |
| chr1.2 | exon | 82565917 | 82566205 | 82565917 | ID=MS.gene065087.t1.exon1;Parent=MS.gene065087.t1 |
| chr1.2 | CDS | 82565917 | 82566205 | 82565917 | ID=cds.MS.gene065087.t1;Parent=MS.gene065087.t1 |
| chr1.2 | exon | 82566308 | 82567701 | 82566308 | ID=MS.gene065087.t1.exon2;Parent=MS.gene065087.t1 |
| chr1.2 | CDS | 82566308 | 82567701 | 82566308 | ID=cds.MS.gene065087.t1;Parent=MS.gene065087.t1 |
| Gene Sequence |
| Protein sequence |
