Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065379.t1 | XP_003624483.2 | 99.3 | 864 | 6 | 0 | 1 | 864 | 1 | 864 | 0.00E+00 | 1642.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065379.t1 | Q9SIU2 | 63.5 | 864 | 297 | 5 | 1 | 862 | 1 | 848 | 0.0e+00 | 1111.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065379.t1 | G7KX77 | 99.3 | 864 | 6 | 0 | 1 | 864 | 1 | 864 | 0.0e+00 | 1642.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene065379 | 0.875576 | 2.76E-68 | -1.69E-46 |
| MS.gene049463 | MS.gene065379 | 0.804621 | 1.98E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene065379 | 0.841854 | 3.69E-58 | -1.69E-46 |
| MS.gene05157 | MS.gene065379 | 0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene065379 | 0.84556 | 3.76E-59 | -1.69E-46 |
| MS.gene053122 | MS.gene065379 | 0.812275 | 4.60E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene065379 | 0.801338 | 9.44E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene065379 | 0.820978 | 5.15E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene065379 | 0.824757 | 6.79E-54 | -1.69E-46 |
| MS.gene056050 | MS.gene065379 | 0.80113 | 1.04E-48 | -1.69E-46 |
| MS.gene056228 | MS.gene065379 | 0.856331 | 3.46E-62 | -1.69E-46 |
| MS.gene056507 | MS.gene065379 | 0.815613 | 8.45E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene065379 | 0.812136 | 4.94E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene065379 | 0.823582 | 1.28E-53 | -1.69E-46 |
| MS.gene060355 | MS.gene065379 | 0.819857 | 9.32E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene065379 | 0.811865 | 5.65E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065379 | MS.gene27229 | PPI |
| MS.gene065379 | MS.gene066507 | PPI |
| MS.gene065379 | MS.gene017522 | PPI |
| MS.gene065379 | MS.gene23804 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065379.t1 | MTR_7g083840 | 99.306 | 864 | 6 | 0 | 1 | 864 | 1 | 864 | 0.0 | 1771 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065379.t1 | AT2G13540 | 65.509 | 864 | 280 | 5 | 1 | 862 | 1 | 848 | 0.0 | 1182 |
Find 198 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAAAAGATTGCTGATT+TGG | 0.191480 | 7.1:+21226340 | MS.gene065379:CDS |
| AACTCGCCTTATGTTCCTTC+TGG | 0.205820 | 7.1:+21222114 | MS.gene065379:CDS |
| AAGACATCCACTAGAGAATT+TGG | 0.210575 | 7.1:-21220111 | None:intergenic |
| TAGCTGAAGTCAGTTCTTTC+TGG | 0.211993 | 7.1:+21228426 | MS.gene065379:CDS |
| CCACTCCCAAACTGAGATTT+TGG | 0.224578 | 7.1:+21215498 | MS.gene065379:CDS |
| AAGAAATAACATCTCTTAAA+AGG | 0.247079 | 7.1:+21228914 | MS.gene065379:CDS |
| CCTCACAAGATTCCTTTCTA+TGG | 0.254169 | 7.1:+21216509 | MS.gene065379:CDS |
| GTTCCTTCTGGGGTATCTTT+TGG | 0.255164 | 7.1:+21222126 | MS.gene065379:CDS |
| GCAAACTCGATCTAAATTTC+AGG | 0.265701 | 7.1:+21217645 | MS.gene065379:CDS |
| TTCAATCTATTCAACCTTGC+AGG | 0.273305 | 7.1:-21229042 | None:intergenic |
| ACAACAGTAGATGAGGAAAA+AGG | 0.275639 | 7.1:+21220159 | MS.gene065379:CDS |
| GTGGATGGTGAACCAGTTAT+TGG | 0.277376 | 7.1:+21229012 | MS.gene065379:CDS |
| TATATTTCCATCCAGTAAAA+TGG | 0.284108 | 7.1:+21222203 | MS.gene065379:CDS |
| ATTGATCAAGCCTCGTTAAT+TGG | 0.288350 | 7.1:-21230625 | None:intergenic |
| CAATCGCTATTGCTGTCATT+TGG | 0.299049 | 7.1:-21228460 | None:intergenic |
| TTTCGGTCAGCTGTTTGTTT+TGG | 0.302187 | 7.1:+21230592 | MS.gene065379:CDS |
| ATTTAGGATGCTCTAGATAC+TGG | 0.307297 | 7.1:+21219605 | MS.gene065379:intron |
| GTACAAACTCTTCTCAATAT+TGG | 0.309175 | 7.1:+21228308 | MS.gene065379:CDS |
| TGTCTTTGTTCAGGAGGTTT+TGG | 0.309499 | 7.1:+21227818 | MS.gene065379:CDS |
| CCCAAATGCATGGGACTTCC+CGG | 0.317575 | 7.1:-21222067 | None:intergenic |
| ACCGGGAAGTCCCATGCATT+TGG | 0.322827 | 7.1:+21222066 | MS.gene065379:CDS |
| CAGCTCAACGACATGGTTAA+AGG | 0.323238 | 7.1:+21228200 | MS.gene065379:CDS |
| ATAACTGTATTAGAAAGATA+TGG | 0.324745 | 7.1:+21228353 | MS.gene065379:CDS |
| AAAGATTGCTGATTTGGATA+TGG | 0.332136 | 7.1:+21226346 | MS.gene065379:CDS |
| CCCTCAACGTGTCTTTGTTC+AGG | 0.333162 | 7.1:+21227809 | MS.gene065379:CDS |
| TTTGAAGCTCAGCTGGTTAC+CGG | 0.343165 | 7.1:+21222048 | MS.gene065379:CDS |
| TTCTTTCATGGTTGGTCTGC+CGG | 0.349288 | 7.1:+21223386 | MS.gene065379:CDS |
| GGGAAGTTCGCTTGTCATAC+TGG | 0.349697 | 7.1:+21227844 | MS.gene065379:CDS |
| TCAAAGGAAAGATGGGTTCT+TGG | 0.358169 | 7.1:-21222030 | None:intergenic |
| AAAGGAATGTGCTTCTTTCA+TGG | 0.358284 | 7.1:+21223374 | MS.gene065379:CDS |
| TCCATTGTCGACGACTCTTC+AGG | 0.358674 | 7.1:-21229969 | None:intergenic |
| ACTTTCAGTTCATCTGGCCT+TGG | 0.361442 | 7.1:+21227748 | MS.gene065379:CDS |
| TCGGAGGAAGTTCCATATTC+AGG | 0.366734 | 7.1:-21215335 | None:intergenic |
| TCAGCACATGGCTGCCATAA+AGG | 0.368473 | 7.1:-21220186 | None:intergenic |
| GAAGGAACATAAGGCGAGTT+TGG | 0.378930 | 7.1:-21222111 | None:intergenic |
| AATCGCTATTGCTGTCATTT+GGG | 0.379502 | 7.1:-21228459 | None:intergenic |
| TTACCTCCAAAATCTCAGTT+TGG | 0.383019 | 7.1:-21215504 | None:intergenic |
| CCGGGAAGTCCCATGCATTT+GGG | 0.384687 | 7.1:+21222067 | MS.gene065379:CDS |
| GCTATGCAATAGGCTCTTCC+TGG | 0.387049 | 7.1:+21226278 | MS.gene065379:intron |
| CTATCGACTTGTATCAAATC+TGG | 0.387470 | 7.1:+21228496 | MS.gene065379:CDS |
| TGGATGGTGAACCAGTTATT+GGG | 0.387842 | 7.1:+21229013 | MS.gene065379:CDS |
| GGCGACAAGAGTCCTGAATA+TGG | 0.391354 | 7.1:+21215323 | MS.gene065379:CDS |
| CACGTTGAGGGGCCCACCTC+GGG | 0.396941 | 7.1:-21227797 | None:intergenic |
| GGTTATTATTGACCTTTGTA+AGG | 0.404580 | 7.1:+21226088 | MS.gene065379:CDS |
| TCAGATTGGCCTGATAAACT+TGG | 0.405648 | 7.1:+21217591 | MS.gene065379:intron |
| AACAATGAACACCTGCTGTC+TGG | 0.408312 | 7.1:+21228176 | MS.gene065379:CDS |
| ACTCGCCTTATGTTCCTTCT+GGG | 0.410921 | 7.1:+21222115 | MS.gene065379:CDS |
| AATCGCCTTCCCAAGGGATC+TGG | 0.411924 | 7.1:+21229891 | MS.gene065379:CDS |
| CTTTCAGTTCATCTGGCCTT+GGG | 0.415312 | 7.1:+21227749 | MS.gene065379:CDS |
| ACAACCGTATTTCTGATCTA+AGG | 0.416149 | 7.1:+21228890 | MS.gene065379:CDS |
| TTTAGCCGCCGTATTCTTTG+AGG | 0.417939 | 7.1:-21222180 | None:intergenic |
| ATAATTTGCTTGTCCTCGTC+AGG | 0.426242 | 7.1:-21228398 | None:intergenic |
| TATCATGCCTCCCATGGGGT+GGG | 0.427608 | 7.1:+21220229 | MS.gene065379:CDS |
| GCCGAACAAGACTAATCCTT+TGG | 0.430206 | 7.1:+21226372 | MS.gene065379:CDS |
| GGTCAAACTTTCAGTTCATC+TGG | 0.430223 | 7.1:+21227742 | MS.gene065379:intron |
| CATTCTTCATCAACGATGAA+TGG | 0.431835 | 7.1:+21215275 | None:intergenic |
| TCTTTCCTTTGAAGCTCAGC+TGG | 0.431957 | 7.1:+21222041 | MS.gene065379:CDS |
| ATCATGCCTCCCATGGGGTG+GGG | 0.432268 | 7.1:+21220230 | MS.gene065379:CDS |
| TACCTCCAAAATCTCAGTTT+GGG | 0.434033 | 7.1:-21215503 | None:intergenic |
| TGCTTCTGTATTTCAATGGC+AGG | 0.438477 | 7.1:+21223020 | MS.gene065379:CDS |
| TTGAAATTCGGTCCACCCTT+CGG | 0.442007 | 7.1:-21228128 | None:intergenic |
| ACCAAAGGATTAGTCTTGTT+CGG | 0.442652 | 7.1:-21226373 | None:intergenic |
| TTTACCAGGGTTCCATAGAA+AGG | 0.449010 | 7.1:-21216521 | None:intergenic |
| TACTCATATCGGAAGGAAAC+CGG | 0.449946 | 7.1:-21223405 | None:intergenic |
| AATGCGGCTGATGACTGTTA+TGG | 0.450028 | 7.1:+21219652 | MS.gene065379:CDS |
| AGCTCAACGACATGGTTAAA+GGG | 0.451062 | 7.1:+21228201 | MS.gene065379:CDS |
| CTTTCCTTAGATCAGAAATA+CGG | 0.452184 | 7.1:-21228894 | None:intergenic |
| TTCAATCTTGGTGCAGAAGA+TGG | 0.453352 | 7.1:+21228146 | MS.gene065379:CDS |
| ATAAGGCGAGTTTGGTAAGT+TGG | 0.453603 | 7.1:-21222103 | None:intergenic |
| CAGTGTCAGAAGTATGCTTT+CGG | 0.455092 | 7.1:-21220445 | None:intergenic |
| AGAATCAGATACCTCAAAAC+AGG | 0.456813 | 7.1:+21230003 | MS.gene065379:CDS |
| AAAAGTGTTGCTTATAATGT+AGG | 0.463225 | 7.1:+21230158 | MS.gene065379:CDS |
| TAAAGTATCCTCAAAGAATA+CGG | 0.465003 | 7.1:+21222172 | MS.gene065379:CDS |
| GGTGGACCGAATTTCAATCT+TGG | 0.467640 | 7.1:+21228134 | MS.gene065379:CDS |
| TCCACCACAAATCGATCTAT+AGG | 0.468884 | 7.1:-21222980 | None:intergenic |
| GACGTGCTTCTGTATTTCAA+TGG | 0.474115 | 7.1:+21223016 | MS.gene065379:CDS |
| GGCTGAGACAATATTCTCTC+AGG | 0.475219 | 7.1:+21223434 | MS.gene065379:CDS |
| ATGGGCCCATATTGAAAAGT+TGG | 0.477163 | 7.1:+21230534 | MS.gene065379:CDS |
| TGTTCTAGCTCCAGATCCCT+TGG | 0.478538 | 7.1:-21229901 | None:intergenic |
| TGCTTATAATGTAGGTGAAA+AGG | 0.479206 | 7.1:+21230166 | MS.gene065379:CDS |
| TCATCTGGCCTTGGGAAGAG+TGG | 0.481495 | 7.1:+21227757 | MS.gene065379:CDS |
| TCTGCACCAAGATTGAAATT+CGG | 0.482025 | 7.1:-21228140 | None:intergenic |
| ACGACGAAGGACACCAAAAC+AGG | 0.484040 | 7.1:-21215467 | None:intergenic |
| GCTGAGCTTCAAAGGAAAGA+TGG | 0.487268 | 7.1:-21222038 | None:intergenic |
| GAATGTGCTTCTTTCATGGT+TGG | 0.490296 | 7.1:+21223378 | MS.gene065379:CDS |
| CGTTGAGCTGTCCAGACAGC+AGG | 0.498763 | 7.1:-21228187 | None:intergenic |
| CAGCCATGAGGTACTCATAT+CGG | 0.501823 | 7.1:-21223416 | None:intergenic |
| ATACTGGGACAAAGTCAAAC+AGG | 0.502101 | 7.1:+21227860 | MS.gene065379:CDS |
| TAACTGTATTAGAAAGATAT+GGG | 0.505446 | 7.1:+21228354 | MS.gene065379:CDS |
| TTATCATGCCTCCCATGGGG+TGG | 0.506551 | 7.1:+21220228 | MS.gene065379:CDS |
| TTCATACAACAGATCGTCCA+TGG | 0.507264 | 7.1:+21228561 | MS.gene065379:CDS |
| GATACCCCAGAAGGAACATA+AGG | 0.507465 | 7.1:-21222120 | None:intergenic |
| AGAAGAATTGCTTCCTCCGA+AGG | 0.509749 | 7.1:+21228112 | MS.gene065379:CDS |
| AGCTTACTGTCCCAAATGCA+TGG | 0.510420 | 7.1:-21222077 | None:intergenic |
| TCAAGAATCTGTAGAAGCTA+AGG | 0.511414 | 7.1:+21229104 | MS.gene065379:CDS |
| CAAATCTGGCAATTGTGAGA+TGG | 0.512027 | 7.1:+21228510 | MS.gene065379:CDS |
| CATCTGGCCTTGGGAAGAGT+GGG | 0.514875 | 7.1:+21227758 | MS.gene065379:CDS |
| ACTGCTCCAGCAACAACTGC+AGG | 0.516612 | 7.1:-21226308 | None:intergenic |
| AAATCTGGCAATTGTGAGAT+GGG | 0.518675 | 7.1:+21228511 | MS.gene065379:CDS |
| CATGAGATTATTTCACGGAC+AGG | 0.521752 | 7.1:-21228230 | None:intergenic |
| TCAATCTATTCAACCTTGCA+GGG | 0.522379 | 7.1:-21229041 | None:intergenic |
| CCTGATAAACTTGGAAAATG+AGG | 0.524035 | 7.1:+21217600 | MS.gene065379:CDS |
| TTGAAGCTCAGCTGGTTACC+GGG | 0.525308 | 7.1:+21222049 | MS.gene065379:CDS |
| CTGTCCGTGAAATAATCTCA+TGG | 0.529734 | 7.1:+21228231 | MS.gene065379:CDS |
| GGTAACCAGCTGAGCTTCAA+AGG | 0.531878 | 7.1:-21222046 | None:intergenic |
| ATTACTCTCTCAATATCTTC+AGG | 0.532069 | 7.1:-21220395 | None:intergenic |
| CTGAGCTTCAAAGGAAAGAT+GGG | 0.532305 | 7.1:-21222037 | None:intergenic |
| CTATTCTACAGTCAGTCAAA+TGG | 0.532364 | 7.1:+21230128 | MS.gene065379:intron |
| TATCAAGTGAGTGAAACTCT+TGG | 0.533347 | 7.1:-21228333 | None:intergenic |
| CAAGTCGATAGCTCATCATT+CGG | 0.534282 | 7.1:-21228484 | None:intergenic |
| CTTCATCAACGATGAATGGT+TGG | 0.542224 | 7.1:+21215279 | None:intergenic |
| CAATCCATGAGATTATTTCA+CGG | 0.544809 | 7.1:-21228235 | None:intergenic |
| GGAAGTTCGCTTGTCATACT+GGG | 0.546665 | 7.1:+21227845 | MS.gene065379:CDS |
| GTTGGAGAAGCCTCATTCTA+CGG | 0.548073 | 7.1:+21215297 | MS.gene065379:CDS |
| CGAGAGAGATCTTAATAACA+AGG | 0.552720 | 7.1:+21220499 | MS.gene065379:CDS |
| GTTCTAGCTCCAGATCCCTT+GGG | 0.553112 | 7.1:-21229900 | None:intergenic |
| AGTAGCGTACTGCCTAGAAA+AGG | 0.555517 | 7.1:-21230225 | None:intergenic |
| TGAAGATATTGAGAGAGTAA+TGG | 0.556496 | 7.1:+21220397 | MS.gene065379:CDS |
| GTCTACACAAGTTGAAGAGA+TGG | 0.558986 | 7.1:+21229938 | MS.gene065379:CDS |
| CGAAAGCATACTTCTGACAC+TGG | 0.560825 | 7.1:+21220446 | MS.gene065379:CDS |
| ACAAGTTCAGCCCCACCCCA+TGG | 0.560898 | 7.1:-21220240 | None:intergenic |
| GCAGCCTATAGATCGATTTG+TGG | 0.562037 | 7.1:+21222976 | MS.gene065379:CDS |
| CCTGAACAAAGACACGTTGA+GGG | 0.562127 | 7.1:-21227809 | None:intergenic |
| ACAACTGCAGGAAAAGCTCC+AGG | 0.562627 | 7.1:-21226296 | None:intergenic |
| ACAAATGGTGTGAGAACCAA+AGG | 0.562640 | 7.1:-21226388 | None:intergenic |
| GAGCTAGAACACTTCGCGAA+TGG | 0.563011 | 7.1:+21229913 | MS.gene065379:CDS |
| TCAACGTGTCTTTGTTCAGG+AGG | 0.563282 | 7.1:+21227812 | MS.gene065379:CDS |
| TTCTACAGTCAGTCAAATGG+TGG | 0.566104 | 7.1:+21230131 | MS.gene065379:intron |
| AACAATATGATCTTTGAAGT+CGG | 0.566774 | 7.1:-21215354 | None:intergenic |
| AATGGATGGAAAGTTGAAAG+TGG | 0.570715 | 7.1:+21221716 | MS.gene065379:CDS |
| CTTCCGATATGAGTACCTCA+TGG | 0.572856 | 7.1:+21223413 | MS.gene065379:CDS |
| CTAGATACTGGAAACTGCAA+TGG | 0.574958 | 7.1:+21219617 | MS.gene065379:CDS |
| TCCTGAAGAGTCGTCGACAA+TGG | 0.575034 | 7.1:+21229968 | MS.gene065379:CDS |
| GCCTATAGATCGATTTGTGG+TGG | 0.575474 | 7.1:+21222979 | MS.gene065379:CDS |
| GAAGAATTGCTTCCTCCGAA+GGG | 0.576132 | 7.1:+21228113 | MS.gene065379:CDS |
| GTGTAATACGCTGGTTTGAA+AGG | 0.578503 | 7.1:-21226062 | None:intergenic |
| CACTACTTTGAGTTATGTGA+AGG | 0.578607 | 7.1:+21230202 | MS.gene065379:CDS |
| CCAAAATCTCAGTTTGGGAG+TGG | 0.579247 | 7.1:-21215498 | None:intergenic |
| ATGTGTTAGATCTCCCGAGG+TGG | 0.582322 | 7.1:+21227784 | MS.gene065379:CDS |
| CCGAGCAACTGATGAAAATG+AGG | 0.584472 | 7.1:+21229140 | MS.gene065379:CDS |
| ACACGTTGAGGGGCCCACCT+CGG | 0.589888 | 7.1:-21227798 | None:intergenic |
| CTCGCCTTATGTTCCTTCTG+GGG | 0.595568 | 7.1:+21222116 | MS.gene065379:CDS |
| TTGACGAATCGCCTTCCCAA+GGG | 0.597934 | 7.1:+21229885 | MS.gene065379:CDS |
| TGTGTTAGATCTCCCGAGGT+GGG | 0.598071 | 7.1:+21227785 | MS.gene065379:CDS |
| GATTCCTTTCTATGGAACCC+TGG | 0.600275 | 7.1:+21216517 | MS.gene065379:CDS |
| TCTTCAACCAAATTCTCTAG+TGG | 0.600763 | 7.1:+21220104 | MS.gene065379:CDS |
| CAAGTTCAGCCCCACCCCAT+GGG | 0.600881 | 7.1:-21220239 | None:intergenic |
| AGCTGCCACAACAGTAGATG+AGG | 0.602450 | 7.1:+21220152 | MS.gene065379:CDS |
| TTTGACGAATCGCCTTCCCA+AGG | 0.604762 | 7.1:+21229884 | MS.gene065379:CDS |
| ATTGCTCAGCACATGTGAGA+AGG | 0.605290 | 7.1:-21216484 | None:intergenic |
| CAACGACATGGTTAAAGGGA+AGG | 0.605497 | 7.1:+21228205 | MS.gene065379:CDS |
| ATGTAGGTGAAAAGGAACAA+TGG | 0.607240 | 7.1:+21230174 | MS.gene065379:CDS |
| TAGAGCATTGAAAATGCACC+TGG | 0.608405 | 7.1:+21228086 | MS.gene065379:intron |
| AGCTGAAGTAGCTGCCAATG+AGG | 0.609407 | 7.1:+21228948 | MS.gene065379:CDS |
| GGGTGGGGCTGAACTTGTTG+AGG | 0.611562 | 7.1:+21220245 | MS.gene065379:CDS |
| TGAGGACTTTGTGAAAAGAC+TGG | 0.611792 | 7.1:+21217618 | MS.gene065379:CDS |
| GTCTGGACAGCTCAACGACA+TGG | 0.612833 | 7.1:+21228193 | MS.gene065379:CDS |
| GCTTACTGTCCCAAATGCAT+GGG | 0.612852 | 7.1:-21222076 | None:intergenic |
| GCTAGATTAAGTACCTCCCA+TGG | 0.614863 | 7.1:-21228578 | None:intergenic |
| TGCCAATGAGGCAAAAGCAG+AGG | 0.615316 | 7.1:+21228960 | MS.gene065379:CDS |
| CAAACCAGCGTATTACACAC+TGG | 0.616115 | 7.1:+21226067 | MS.gene065379:CDS |
| GTTCAGCCCCACCCCATGGG+AGG | 0.616296 | 7.1:-21220236 | None:intergenic |
| GCTGGTTTGAAAGGTGGCTG+TGG | 0.616812 | 7.1:-21226053 | None:intergenic |
| GGAAGCAATTCTTCTAAACC+AGG | 0.617258 | 7.1:-21228104 | None:intergenic |
| TGTCGCCGATCCGTAGAATG+AGG | 0.619482 | 7.1:-21215307 | None:intergenic |
| GAATTGCTTCCTCCGAAGGG+TGG | 0.620658 | 7.1:+21228116 | MS.gene065379:CDS |
| ATAACCAGTGTGTAATACGC+TGG | 0.626518 | 7.1:-21226071 | None:intergenic |
| TCCTGAACAAAGACACGTTG+AGG | 0.626849 | 7.1:-21227810 | None:intergenic |
| AAATTCGGTCCACCCTTCGG+AGG | 0.630320 | 7.1:-21228125 | None:intergenic |
| GATATTGAGAGAGTAATGGT+TGG | 0.632531 | 7.1:+21220401 | MS.gene065379:CDS |
| TCAAAACTAGCACTTGTGGA+TGG | 0.635198 | 7.1:+21228997 | MS.gene065379:CDS |
| TCTACAGTCAGTCAAATGGT+GGG | 0.636123 | 7.1:+21230132 | MS.gene065379:intron |
| AGTGGTCGAGCTCACGACGA+AGG | 0.636523 | 7.1:-21215480 | None:intergenic |
| AGAAGCCTCATTCTACGGAT+CGG | 0.636714 | 7.1:+21215302 | MS.gene065379:CDS |
| ACATAAGCCCACTCTTCCCA+AGG | 0.642323 | 7.1:-21227765 | None:intergenic |
| TTCTAGGCAGTACGCTACTG+AGG | 0.642555 | 7.1:+21230229 | MS.gene065379:CDS |
| TTCATGCAAAGCTAGTCGAA+AGG | 0.642569 | 7.1:+21223356 | MS.gene065379:intron |
| TCATACAACAGATCGTCCAT+GGG | 0.646415 | 7.1:+21228562 | MS.gene065379:CDS |
| TAGCTCCAGATCCCTTGGGA+AGG | 0.649924 | 7.1:-21229896 | None:intergenic |
| CATGAGGTACTCATATCGGA+AGG | 0.657242 | 7.1:-21223412 | None:intergenic |
| TTATTGGGGAAAACCCTGCA+AGG | 0.661602 | 7.1:+21229028 | MS.gene065379:CDS |
| TTACCAAAAGATACCCCAGA+AGG | 0.662578 | 7.1:-21222129 | None:intergenic |
| CCATAGAAAGGAATCTTGTG+AGG | 0.662629 | 7.1:-21216509 | None:intergenic |
| TACAACAGATCGTCCATGGG+AGG | 0.664252 | 7.1:+21228565 | MS.gene065379:CDS |
| ATTTCCATCCAGTAAAATGG+AGG | 0.665342 | 7.1:+21222206 | MS.gene065379:CDS |
| CTTATGTGTTAGATCTCCCG+AGG | 0.668646 | 7.1:+21227781 | MS.gene065379:CDS |
| TAATACGCTGGTTTGAAAGG+TGG | 0.671260 | 7.1:-21226059 | None:intergenic |
| CTGAACAAAGACACGTTGAG+GGG | 0.677463 | 7.1:-21227808 | None:intergenic |
| GACTAGAAAGTACCTTACAA+AGG | 0.683156 | 7.1:-21226100 | None:intergenic |
| GGATGGTGAACCAGTTATTG+GGG | 0.686077 | 7.1:+21229014 | MS.gene065379:CDS |
| GGATGCAGAAGTACTAACAG+AGG | 0.695226 | 7.1:+21230555 | MS.gene065379:CDS |
| AATATGATCTTTGAAGTCGG+AGG | 0.698021 | 7.1:-21215351 | None:intergenic |
| AGAATATTGTCTCAGCCATG+AGG | 0.700331 | 7.1:-21223428 | None:intergenic |
| GGACTTTGTGAAAAGACTGG+TGG | 0.703361 | 7.1:+21217621 | MS.gene065379:CDS |
| GTTATGTAAAAGTCAGCACA+TGG | 0.708008 | 7.1:-21220198 | None:intergenic |
| AGAGTCAAAACTAGCACTTG+TGG | 0.709196 | 7.1:+21228993 | MS.gene065379:CDS |
| AGTATCCTCAAAGAATACGG+CGG | 0.717953 | 7.1:+21222175 | MS.gene065379:CDS |
| TCTTCGAAGACCAATTAACG+AGG | 0.718077 | 7.1:+21230615 | MS.gene065379:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 21215290 | 21230642 | 21215290 | ID=MS.gene065379 |
| chr7.1 | mRNA | 21215290 | 21230642 | 21215290 | ID=MS.gene065379.t1;Parent=MS.gene065379 |
| chr7.1 | exon | 21215290 | 21215373 | 21215290 | ID=MS.gene065379.t1.exon1;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21215290 | 21215373 | 21215290 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21215463 | 21215522 | 21215463 | ID=MS.gene065379.t1.exon2;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21215463 | 21215522 | 21215463 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21216482 | 21216538 | 21216482 | ID=MS.gene065379.t1.exon3;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21216482 | 21216538 | 21216482 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21217595 | 21217666 | 21217595 | ID=MS.gene065379.t1.exon4;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21217595 | 21217666 | 21217595 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21219611 | 21219673 | 21219611 | ID=MS.gene065379.t1.exon5;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21219611 | 21219673 | 21219611 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21220090 | 21220266 | 21220090 | ID=MS.gene065379.t1.exon6;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21220090 | 21220266 | 21220090 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21220389 | 21220520 | 21220389 | ID=MS.gene065379.t1.exon7;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21220389 | 21220520 | 21220389 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21221671 | 21221737 | 21221671 | ID=MS.gene065379.t1.exon8;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21221671 | 21221737 | 21221671 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21222028 | 21222227 | 21222028 | ID=MS.gene065379.t1.exon9;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21222028 | 21222227 | 21222028 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21222971 | 21223041 | 21222971 | ID=MS.gene065379.t1.exon10;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21222971 | 21223041 | 21222971 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21223371 | 21223455 | 21223371 | ID=MS.gene065379.t1.exon11;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21223371 | 21223455 | 21223371 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21226041 | 21226109 | 21226041 | ID=MS.gene065379.t1.exon12;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21226041 | 21226109 | 21226041 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21226290 | 21226408 | 21226290 | ID=MS.gene065379.t1.exon13;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21226290 | 21226408 | 21226290 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21227743 | 21227881 | 21227743 | ID=MS.gene065379.t1.exon14;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21227743 | 21227881 | 21227743 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21228089 | 21228586 | 21228089 | ID=MS.gene065379.t1.exon15;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21228089 | 21228586 | 21228089 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21228862 | 21229161 | 21228862 | ID=MS.gene065379.t1.exon16;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21228862 | 21229161 | 21228862 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21229846 | 21230024 | 21229846 | ID=MS.gene065379.t1.exon17;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21229846 | 21230024 | 21229846 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21230139 | 21230250 | 21230139 | ID=MS.gene065379.t1.exon18;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21230139 | 21230250 | 21230139 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| chr7.1 | exon | 21230532 | 21230642 | 21230532 | ID=MS.gene065379.t1.exon19;Parent=MS.gene065379.t1 |
| chr7.1 | CDS | 21230532 | 21230642 | 21230532 | ID=cds.MS.gene065379.t1;Parent=MS.gene065379.t1 |
| Gene Sequence |
| Protein sequence |
