AlfalfaGEDB | MS.gene065589

M. sativa cultivar XinJiangDaYe / MS.gene065589

KEGG: K09587
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065589.t1	XP_003611982.2	96.9	449	8	1	1	449	41	483	6.20E-256	892.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065589.t1	O64989	71.9	467	104	4	2	443	45	509	2.6e-194	679.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065589.t1	G7KDI9	96.9	449	8	1	1	449	41	483	4.5e-256	892.9

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene065589	0.800015	1.76E-48	-1.69E-46
MS.gene049378	MS.gene065589	0.806443	8.20E-50	-1.69E-46
MS.gene04991	MS.gene065589	-0.842428	2.60E-58	-1.69E-46
MS.gene050226	MS.gene065589	0.814458	1.53E-51	-1.69E-46
MS.gene050227	MS.gene065589	0.800193	1.62E-48	-1.69E-46
MS.gene050228	MS.gene065589	0.814101	1.83E-51	-1.69E-46
MS.gene050623	MS.gene065589	-0.852685	3.92E-61	-1.69E-46
MS.gene050762	MS.gene065589	0.830619	2.65E-55	-1.69E-46
MS.gene050763	MS.gene065589	0.828576	8.33E-55	-1.69E-46
MS.gene054379	MS.gene065589	0.831972	1.23E-55	-1.69E-46

Showing 1 to 10 of 14 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene000023	MS.gene065589	PPI
MS.gene005830	MS.gene065589	PPI
MS.gene008068	MS.gene065589	PPI
MS.gene009898	MS.gene065589	PPI
MS.gene031988	MS.gene065589	PPI
MS.gene04038	MS.gene065589	PPI
MS.gene057332	MS.gene065589	PPI
MS.gene063487	MS.gene065589	PPI
MS.gene065589	MS.gene94508	PPI
MS.gene065589	MS.gene97810	PPI

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065589.t1	MTR_5g020020	96.882	449	8	1	1	449	41	483	0.0	904
MS.gene065589.t1	MTR_8g077810	81.532	444	79	2	1	444	38	478	0.0	758
MS.gene065589.t1	MTR_5g020020	95.954	346	8	1	104	449	70	409	0.0	687
MS.gene065589.t1	MTR_5g020020	100.000	31	0	0	1	31	41	71	3.38e-13	71.2
MS.gene065589.t1	MTR_7g033040	43.146	445	238	7	1	444	38	468	1.56e-135	398
MS.gene065589.t1	MTR_5g082520	40.667	450	248	8	1	445	33	468	6.78e-120	358
MS.gene065589.t1	MTR_3g070380	41.725	429	238	7	1	428	34	451	3.49e-116	349
MS.gene065589.t1	MTR_8g016180	36.018	447	265	7	1	444	42	470	1.59e-98	303
MS.gene065589.t1	MTR_5g021220	34.490	461	275	7	2	447	42	490	1.73e-97	301
MS.gene065589.t1	MTR_6g069000	35.904	415	257	6	2	416	46	451	1.38e-96	298

Showing 1 to 10 of 235 entries

Previous1 2 3 4 5…24Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065589.t1	AT3G50660	71.674	466	107	3	2	443	45	509	0.0	689
MS.gene065589.t1	AT3G50660	73.711	388	81	1	2	368	45	432	0.0	600
MS.gene065589.t1	AT5G14400	38.288	444	244	5	1	444	1	414	7.00e-117	349
MS.gene065589.t1	AT5G05690	41.259	429	238	7	1	428	36	451	2.33e-114	344
MS.gene065589.t1	AT5G14400	39.234	418	225	4	1	418	1	389	6.34e-111	332
MS.gene065589.t1	AT1G73340	36.629	445	263	7	2	443	49	477	4.27e-104	318
MS.gene065589.t1	AT4G36380	37.472	451	259	8	1	443	74	509	1.04e-101	313
MS.gene065589.t1	AT1G12740	35.857	449	267	8	1	444	36	468	4.09e-99	305
MS.gene065589.t1	AT1G12740	35.604	455	266	9	1	444	36	474	3.81e-97	300
MS.gene065589.t1	AT5G05690	41.333	375	212	6	1	374	36	403	9.99e-97	296

Showing 1 to 10 of 199 entries

Previous1 2 3 4 5…20Next

Find 91 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTATGATATTCCATG+TGG	0.690985	5.3:+11444909	MS.gene065589:intron
AAAGTAAATAGCTAGAGCTA+TGG	0.522820	5.3:-11444076	None:intergenic
AAATGCACGGCTGCAATGAC+CGG	0.475595	5.3:-11444945	None:intergenic
AACACTTTAATCCATGGAGA+TGG	0.601114	5.3:+11444994	MS.gene065589:CDS
AACCTCAACACTTTAATCCA+TGG	0.561645	5.3:+11444988	MS.gene065589:CDS
AAGAATCAAAAGAATGCAAG+AGG	0.490859	5.3:+11443927	MS.gene065589:CDS
AAGGTTATGATATTCCATGT+GGG	0.740085	5.3:+11444910	MS.gene065589:intron
AAGTAAAGGATCCAAATGCA+CGG	0.650077	5.3:-11444958	None:intergenic
AATCTTGGTCCTCCTCCAAA+CGG	0.560213	5.3:-11447802	None:intergenic
AATTGTAGTTGAGAATGAGA+TGG	0.717075	5.3:-11447873	None:intergenic

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTATGATATTCCATG+TGG	+	chr5.3:11444909-11444928	MS.gene065589:intron	30.0%
AAAGTAAATAGCTAGAGCTA+TGG	-	chr5.3:11444079-11444098	None:intergenic	30.0%
AAGAATCAAAAGAATGCAAG+AGG	+	chr5.3:11443927-11443946	MS.gene065589:CDS	30.0%
AAGGTTATGATATTCCATGT+GGG	+	chr5.3:11444910-11444929	MS.gene065589:intron	30.0%
AATTGTAGTTGAGAATGAGA+TGG	-	chr5.3:11447876-11447895	None:intergenic	30.0%
AGAATCAAAAGAATGCAAGA+GGG	+	chr5.3:11443928-11443947	MS.gene065589:CDS	30.0%
AGAATTAGCAAAGCTTGAAA+TGG	+	chr5.3:11447837-11447856	MS.gene065589:CDS	30.0%
AGCATGACACAAAAAATTGA+GGG	-	chr5.3:11443306-11443325	None:intergenic	30.0%
AGGGATACAAATAATGAGAA+TGG	+	chr5.3:11446373-11446392	MS.gene065589:intron	30.0%
AGTGATAGTAATTAGTGACT+CGG	+	chr5.3:11446068-11446087	MS.gene065589:intron	30.0%

Showing 1 to 10 of 317 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	11442922	11447993	11442922	ID=MS.gene065589
chr5.3	mRNA	11442922	11447993	11442922	ID=MS.gene065589.t1;Parent=MS.gene065589
chr5.3	exon	11442922	11443013	11442922	ID=MS.gene065589.t1.exon1;Parent=MS.gene065589.t1
chr5.3	CDS	11442922	11443013	11442922	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11443106	11443430	11443106	ID=MS.gene065589.t1.exon2;Parent=MS.gene065589.t1
chr5.3	CDS	11443106	11443430	11443106	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11443532	11443684	11443532	ID=MS.gene065589.t1.exon3;Parent=MS.gene065589.t1
chr5.3	CDS	11443532	11443684	11443532	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11443883	11444134	11443883	ID=MS.gene065589.t1.exon4;Parent=MS.gene065589.t1
chr5.3	CDS	11443883	11444134	11443883	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11444400	11444492	11444400	ID=MS.gene065589.t1.exon5;Parent=MS.gene065589.t1
chr5.3	CDS	11444400	11444492	11444400	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11444716	11444794	11444716	ID=MS.gene065589.t1.exon6;Parent=MS.gene065589.t1
chr5.3	CDS	11444716	11444794	11444716	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11444913	11445019	11444913	ID=MS.gene065589.t1.exon7;Parent=MS.gene065589.t1
chr5.3	CDS	11444913	11445019	11444913	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1
chr5.3	exon	11447745	11447993	11447745	ID=MS.gene065589.t1.exon8;Parent=MS.gene065589.t1
chr5.3	CDS	11447745	11447993	11447745	ID=cds.MS.gene065589.t1;Parent=MS.gene065589.t1

Gene Sequence

>MS.gene065589

ATGGGTTGGCCTTTCATTGGAGAAACTATTGGTTACTTGAAGCCTTATTCTGCTACAACTATAGGAAAATTCATGGAACAACACATAGCAAGGTAAAAAATTTATAATAAATAAATAAATAAATAAATAATTTTTTAGAGAAACAAAAATGACCCTTCTAATCTAACTACAAAATTATATGCAGGTATGGTAAAATTTACAAATCAAATTTGTTTGGTGGACCAACAATAGTTTCAGCAGATGCAGGATTGAATAGGTTCATATTACAAAATGAAGGGAAATTATTTGAGTGTAGTTATCCAAGTAGCATTGGTGGAATACTTGGGAAATGGTCTATGTTGGTTTTGGTTGGTGACATGCATAGAGACATGCGTAATATATCCCTCAATTTTTTGTGTCATGCTAGACTTAGAACACATCTATTGAAAGAGGTTGAGAAACATAGCCGTCTTGTTGTGAGCTCTTGGAAGGAAAAAACCACATTTGCAGCTCAAGATGAAGCTAAAAAGGTAACAATTATTTTATATTTTAATGTAATATATATATATATATATATTTTTTATATTTAATAGATAAAGATAAACTAAAGTTTGTTTGGTTTAAATTGCAGTTCACATTTAATTTGATGGCAGAACACATTATGAGTCTTCAACCTGGGAAAATAGAGACAGAGAACTTAAAGAAAGAGTATGTTACTTTTATGAAAGGTGTTGTATCAGCACCATTGAATTTTCCTGGAACTGCTTACTGGAGAGCATTAAAGGTATTGATGATAATGATGAATATATTTTTTTTATTTAATCTAGATAACCCCATTTTGTTATTATATTTAGTGCATGTTTAATTACATGGCGAGTTACCATGATTTTAGCAAAAGAGCTTGGGTCTATATTTGCTATCATTATGTCAGAATTACGATAACCTACGGTGATTCTGACATATGTTTGTTTGTATTTTACAGTCAAGATGCACAATATTGAAGTTCATAGAGGGAAAAATGGAAGAAAGAATCAAAAGAATGCAAGAGGGAAATGAAAATTCGGAGGAAAATGATCTTTTGAACTGGGTTTTGAAACATTCAAATCTTTCAACAGAGCAAATTCTTGACTTGATTCTCAGCTTGCTCTTTGCTGGTCATGAAACTTCATCTGTTTCCATAGCTCTAGCTATTTACTTTCTTCCTGGTTGTCCTCAAGCTATACTACAATTGAGGGTAAGCAATTTTAGTGATGCTATTATTATTTATCTATGAAGCATGAATACGGACACAAATACCGGAAACGACATTGACACGCCGACACCACTAATTATATTTTTTGGTGTTGTGTCGGTGTCGGACACGTAATCTGAGAAGTGTTCATGCTTAGGTTTTCCAAAGAATATATGTTCTTTCTCACTTTAGCTTCTAGCTTATAAAATATTGAGAATTTTACTGTAGTAATAATTATGTTTTGTTTTTTACTGTGGAAAAACAATAGGAAGAACACAAAGAAATCGCCAGAGCCAAAAAACTAGCAGGGGAAACAGAACTGACTTGGGAAGACTACAAAAAAATGGAATTTACTCACTGTGTAAGTCATAAATGATAAATAAATTGGAGGGGTCTTCTTGTCCTTTTTTTTAATATAAAATATAAATAAGCATATGCATTATTATATTAGATGACAAATGCCCTTTAAAGTGTTCACAACAGAACATAATTATTTGTTTAAACAAAGAAGAAAAATCTATAATCTTTACGTAAAGTATATTATATTTTATGCATAACATTATTAGTTGCTCATATTTGTACAGGTTGTGAACGAGACACTTAGGCTGGGTAATGTTGTGAGGTTCCTTCATAGGAAGGCTCTTAAAGATGTTCGGTACAAAGGTACATTAGTACTATAAATAAATTCTTTTTTAGTAGTAAGATCAAAATCTCTTTTGCGAGAAAAAGGAAATAGAGAATAGTTATAGTAAAGGGGAAATTCTTTTTGTGTTTGTGAAAGGTTATGATATTCCATGTGGGTGGAAAGTCCTTCCGGTCATTGCAGCCGTGCATTTGGATCCTTTACTTTTTGACCAACCTCAACACTTTAATCCATGGAGATGGCAGGTTAGTCCTTTCTACTTGATAAGTAACATCTAGATATAAAGCACGCAAACCGATACATTGGTGATCGTTCGATTAAAGTCAGACGTCCCATATTTTGATTTTGATATTGGAATATGAATCGTTTGATTTTGATCCAAGAATATGTAGATAATTATTTTGATTCTAAAGCATGTCTTTGAAATATGAGTCTTGTTAACGAGTGCCCTTGGGGCACTCCTTAAGCATGCTAAGTAAAATAATTATTCTTTCAAAATTTAAAAGTTTTCAATTCCCAATGCACTGATTACACAAACTTTTATAAAAAGTTACTATTTTAGGTCCTTAACCAGTGCACCGGGGGCACTAGTTAACATTTCCCTTGAAATATTAATAAACATTATGTAATTATTAGGAAAAGGGGGGAAAAGAATAAAAATATAAGTAATAGGGGTCCCCAAGCACTTAAATTTGTTATTGTGGTGTGGATCCCTAATTGGGCTTTCCTTTGAAGGTGTGGTTGTGAACAAAATTTGGTTCACTTTTAAGGGTTGAGATTTTTGCCAAAAATGTAACTTCGTATAGGGTCATTTAGCTTCTTGAGTTATTATCTTCCTACTTTGAAAGAACACAACAAGTTTTTACGTTTGGCGATTCAGAATCAGACCAAGCATAACGTACACACGCTGCACGGCTTTGACAAAATATTAACACAAAATTGAAAAAACAATGCTTTTGATATTTGATTACTGTTAATGTTGACTTGGTCCTATAGCTATACCACACTTTTATTCATCACCAATGCACATGCTCTAAAGCTCTAAATCTTTAGTGGTAGTCCCCTAGCTAACTATAAATTATTCAGTGTTGGGTCAACATTCATTTGGTTAGTTAAAGTAATTAATTTAATACATCTCTCTCAACCAATGCTTATGGCTCAAGGAATGATTAAAGTATATAATAATTTTCTTCAATTATTAATCTTTTCCAATTTAAATGCGATATGCTTTAAAAATATTGATATAGAATAAATTATTTTATTGTTCTATGAATTAATATTTAATTTTCATTTAGTGATAGTAATTAGTGACTCGGTTAGAAGTCAACTATATCTCACAATAGAGGATCAAGTACATGGGTCCGTCCATCCCTTTCCATGCATGTGCCAAAGTTTCAATTTAGAATCTGGGTTATTACTATTAGGCTTAACTTAACTACAAAAATTAGTTCAAAAGTTGAAGCTTACACAAGTCTATATCTCAATCGAGATTTTTGGATTTAATTGTAACTCAACCCAAAAATTAAACCCTCTTTTACAATACCTGAGGCGTACAAAGCTATTTTTTTTTAAGCAAAGAAAAATTATATAAAAAATAAAGGGATACAAATAATGAGAATGGACTTGACTCGGGAATAACCCAAAGAGAAATATATCGTGTTAAATCAGTCTAGATGGATCAACTCTAATCTACCCTAACAAAAATTCATTAACGTGCAACCCAACAAGCTTGTGTACAGACATGAAACTAAGTTACAAAAAAGTATGAAAAGTGAACATTTACAATAACAGTTAAAGTATAAAAATGGCAAAATAACAAAGCTATCATTTGTATTTATAGTAAGTTTGTTAAAATTACAATGAATAGTGTAACTTAGGCATTGTAATTTTATCAAATTTACCCTAATTTGAAACATGCGCATATAGATAGGATCTTTAGTGGTTAGCAGGCATTTGCATTGGCATTGGCATTCAGAGATGATGATGAAGTGTCATAATCAACGATGGGTATGTTGTGAACAGTAGTACTACGGATGTATGTAGGTCCCAAAAGATGTTATTATGATGATGAGCAAGCATGGCCATTGTGTGAACGTGTGGGCAGCAGGTCCTGAGTTTCCAGGTCATTAATTAATGCCCATGTGGAAAGTGGGCCTCTCACTTGCACGTGCATATCTACCTTTTCTCTTTTATTTTTTCCATCATGGTCCTAACTTGGTCAATACGTGTCAAGTGTGAATTTAGTAGTATTTGAGATTTTGATATCATAAAAGAGTTTAAGTCAGTTAATTAGGTGAGATTATTTGAATATGTTGATTGATTTTCCGCACTAACCACTTTGTGCTCTAATATGATATCTTCTACTGATATTTTAGACTCCCCTAACATAAAAACTCACTTCTCACACACATTTATTTATTAGGAGTATCACTTGATTACATAAGATTTGTGCGGAATATCGAACATGTACATATGTAGCCAAGTGGGAAAAGTGATAGTAAGTTTCTAGATAACACAATTATGAGTGTGACAAAGTACCATAGTCCACTCCAGCACCAGAAATCATCAATCTTAATACTATTATTTATCCTTAGCCTCGAGTTGTCATATGTAGTCACGCCTTCATGTGTCATGATTCGATGTTGTATCTATACATTCTTATAATAATGTTAGGGAAGGTTCCATATCTCATGCAGTAAAAACCACATCGGGTTTTATAGTTGGAGTAATCTTGGTTGTCTAATTAAGATCGGATGATTTTGATTTCAATCATTTTTATTCTTTTTATTAAATTTTAAAAACCTATACTAAAATTTCAAGTGTTTGCTTTTGATCGGATGGTCGGAAATGCTCAAGACTGCATACATATGTTATGCTCAAGATTGCATAACATTTTTGTTTTCAAATAAATAGTATATGCTACTACCATTTGAATATTATATTGATGTTAATGTTGGGTTGGTGGTGCAGAACAATGGTAATAATGGACCAAACTCAAGTGCATCTGGCAATAGTAATATTTTCTTACCGTTTGGAGGAGGACCAAGATTATGCGCAGGATCAGAATTAGCAAAGCTTGAAATGGCTGTTTTCATTCACCATCTCATTCTCAACTACAATTGGGAATTAACTGATAATAACGACCAAGCTTTTGCATATCCTTTTGTTGATTTTCCTAAAGGCCTACAAATAAGAGTTCAAGCCCACTCTATAATATGA

Protein sequence

>MS.gene065589.t1

MGWPFIGETIGYLKPYSATTIGKFMEQHIARYGKIYKSNLFGGPTIVSADAGLNRFILQNEGKLFECSYPSSIGGILGKWSMLVLVGDMHRDMRNISLNFLCHARLRTHLLKEVEKHSRLVVSSWKEKTTFAAQDEAKKFTFNLMAEHIMSLQPGKIETENLKKEYVTFMKGVVSAPLNFPGTAYWRALKSRCTILKFIEGKMEERIKRMQEGNENSEENDLLNWVLKHSNLSTEQILDLILSLLFAGHETSSVSIALAIYFLPGCPQAILQLREEHKEIARAKKLAGETELTWEDYKKMEFTHCVVNETLRLGNVVRFLHRKALKDVRYKGYDIPCGWKVLPVIAAVHLDPLLFDQPQHFNPWRWQNNGNNGPNSSASGNSNIFLPFGGGPRLCAGSELAKLEMAVFIHHLILNYNWELTDNNDQAFAYPFVDFPKGLQIRVQAHSII