Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066119.t1 | XP_013441806.1 | 97.7 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 1.40E-138 | 502.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066119.t1 | Q54GN8 | 72.3 | 260 | 72 | 0 | 1 | 260 | 1 | 260 | 7.1e-104 | 378.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066119.t1 | A0A072TF50 | 97.7 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 9.8e-139 | 502.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89672 | MS.gene066119 | PPI |
| MS.gene68079 | MS.gene066119 | PPI |
| MS.gene051451 | MS.gene066119 | PPI |
| MS.gene066119 | MS.gene004882 | PPI |
| MS.gene064459 | MS.gene066119 | PPI |
| MS.gene066119 | MS.gene64789 | PPI |
| MS.gene59485 | MS.gene066119 | PPI |
| MS.gene062254 | MS.gene066119 | PPI |
| MS.gene44230 | MS.gene066119 | PPI |
| MS.gene85577 | MS.gene066119 | PPI |
| MS.gene066119 | MS.gene012127 | PPI |
| MS.gene67460 | MS.gene066119 | PPI |
| MS.gene07704 | MS.gene066119 | PPI |
| MS.gene07405 | MS.gene066119 | PPI |
| MS.gene017622 | MS.gene066119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066119.t1 | MTR_0508s0010 | 97.692 | 260 | 6 | 0 | 1 | 260 | 1 | 260 | 0.0 | 520 |
| MS.gene066119.t1 | MTR_3g088865 | 91.923 | 260 | 21 | 0 | 1 | 260 | 1 | 260 | 1.03e-174 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066119.t1 | AT5G06360 | 86.923 | 260 | 34 | 0 | 1 | 260 | 1 | 260 | 4.69e-172 | 475 |
Find 66 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCAATCTTGAAATTAT+TGG | 0.186081 | 1.4:-47368767 | MS.gene066119:CDS |
| AGCTGTTCCTGCTTATCTTT+TGG | 0.213713 | 1.4:-47369750 | MS.gene066119:CDS |
| GACCGTCACATAAAAGAAAA+TGG | 0.314189 | 1.4:-47370311 | MS.gene066119:CDS |
| AGCCTCTCTCTTGCGCTTGC+GGG | 0.318070 | 1.4:+47370268 | None:intergenic |
| TTTCTGGGTTGTTGGTAACC+TGG | 0.337046 | 1.4:+47368041 | None:intergenic |
| GAAACAGACTATTGGTCTTA+AGG | 0.346482 | 1.4:-47370099 | MS.gene066119:intron |
| CAGGTGAATGTCAGCGAACT+TGG | 0.351479 | 1.4:-47368195 | MS.gene066119:CDS |
| GAAGGAGAAGGCTGGGAAAT+GGG | 0.354471 | 1.4:-47369577 | MS.gene066119:CDS |
| GAGGTGTACATGGGGCCATT+AGG | 0.355093 | 1.4:+47368731 | None:intergenic |
| TTGAATGTGCATTTAAGTTC+AGG | 0.355975 | 1.4:+47368782 | None:intergenic |
| GGAAGGAGAAGGCTGGGAAA+TGG | 0.369119 | 1.4:-47369578 | MS.gene066119:CDS |
| CCTCTCTTGGTGTCATTACC+AGG | 0.375954 | 1.4:-47368712 | MS.gene066119:CDS |
| GGTTCACAACCACTCTAAAA+AGG | 0.386198 | 1.4:-47370240 | MS.gene066119:CDS |
| AGGTGTACATGGGGCCATTA+GGG | 0.387835 | 1.4:+47368732 | None:intergenic |
| AAACAGACTATTGGTCTTAA+GGG | 0.408363 | 1.4:-47370098 | MS.gene066119:intron |
| ATTCGAGTGAAACAGACTAT+TGG | 0.411760 | 1.4:-47370107 | MS.gene066119:intron |
| CGAATGAATCGCTCATACTT+TGG | 0.413112 | 1.4:+47368845 | None:intergenic |
| CAAGGCTGATGATAATGTTC+AGG | 0.418037 | 1.4:-47369777 | MS.gene066119:CDS |
| TTCTGGGTTGTTGGTAACCT+GGG | 0.421246 | 1.4:+47368042 | None:intergenic |
| GGAAAAGGGTTAAACCTTCT+GGG | 0.431363 | 1.4:+47370217 | None:intergenic |
| GTTACAAAAGCAACATTTGT+TGG | 0.433060 | 1.4:-47368890 | MS.gene066119:CDS |
| TTACAAAAGCAACATTTGTT+GGG | 0.454651 | 1.4:-47368889 | MS.gene066119:CDS |
| GGCCCCATGTACACCTCTCT+TGG | 0.465138 | 1.4:-47368725 | MS.gene066119:CDS |
| CTTGGACTGGTTACACCTGC+AGG | 0.473860 | 1.4:-47368177 | MS.gene066119:CDS |
| GAGCCTCTCTCTTGCGCTTG+CGG | 0.475580 | 1.4:+47370267 | None:intergenic |
| CCGAAAAGGCACAGATGAAA+AGG | 0.477452 | 1.4:-47370049 | MS.gene066119:CDS |
| CGACTGACATACCTTTGCTC+TGG | 0.490585 | 1.4:+47369712 | None:intergenic |
| AAAGCAACATTTGTTGGGCC+TGG | 0.494371 | 1.4:-47368884 | MS.gene066119:CDS |
| AACATTTCATCTTCAGCCAC+AGG | 0.498226 | 1.4:+47369380 | None:intergenic |
| GAGCGATTCATTCGTCCCAC+TGG | 0.500866 | 1.4:-47368836 | MS.gene066119:CDS |
| ATGAATCGCTCATACTTTGG+TGG | 0.502666 | 1.4:+47368848 | None:intergenic |
| GAATGTCAGCGAACTTGGAC+TGG | 0.509662 | 1.4:-47368190 | MS.gene066119:CDS |
| CCCCACACAACTTTCCCTGC+AGG | 0.510551 | 1.4:+47368162 | None:intergenic |
| TCACGATCCAAAAGATAAGC+AGG | 0.510830 | 1.4:+47369743 | None:intergenic |
| TACCTCAATTATAGATCCCC+TGG | 0.514336 | 1.4:+47368694 | None:intergenic |
| ACCTGCAGGGAAAGTTGTGT+GGG | 0.521487 | 1.4:-47368163 | MS.gene066119:CDS |
| GACACCAAGAGAGGTGTACA+TGG | 0.523657 | 1.4:+47368721 | None:intergenic |
| TGCGGGTTTCGTGATCGAAA+CGG | 0.524765 | 1.4:+47370285 | None:intergenic |
| CTATTGGTCTTAAGGGAAAG+AGG | 0.536215 | 1.4:-47370091 | MS.gene066119:CDS |
| CACCTGCAGGGAAAGTTGTG+TGG | 0.542031 | 1.4:-47368164 | MS.gene066119:CDS |
| TGCAATCTCACCTTAGGTAG+AGG | 0.542351 | 1.4:+47369549 | None:intergenic |
| AACCCGCAAGCGCAAGAGAG+AGG | 0.557787 | 1.4:-47370270 | MS.gene066119:CDS |
| ATGGGATGTTCCTCTACCTA+AGG | 0.559228 | 1.4:-47369559 | MS.gene066119:intron |
| ATTTCCTCAGGTACGTCCTG+TGG | 0.566309 | 1.4:-47369396 | MS.gene066119:intron |
| GCGCAAGAGAGAGGCTCGTG+AGG | 0.578621 | 1.4:-47370261 | MS.gene066119:CDS |
| ATGTTCAAAGTGGTCCGCAC+CGG | 0.580559 | 1.4:-47369362 | MS.gene066119:CDS |
| TACCAGGGGATCTATAATTG+AGG | 0.588901 | 1.4:-47368696 | MS.gene066119:intron |
| AGCTAAGCAATGGAAGAGAA+TGG | 0.593298 | 1.4:-47368912 | MS.gene066119:CDS |
| GAATGCAGGTAAATATGCCC+AGG | 0.594561 | 1.4:-47368059 | MS.gene066119:intron |
| ACCAACAACCCAGAAAATGA+TGG | 0.595399 | 1.4:-47368034 | MS.gene066119:CDS |
| CTCTCTTGGTGTCATTACCA+GGG | 0.600053 | 1.4:-47368711 | MS.gene066119:CDS |
| TCTCTTGGTGTCATTACCAG+GGG | 0.619690 | 1.4:-47368710 | MS.gene066119:CDS |
| TGCATGAAGAGTCAACATCT+AGG | 0.620336 | 1.4:-47369802 | MS.gene066119:CDS |
| TGAAAACACAACCAGAGCAA+AGG | 0.620353 | 1.4:-47369723 | MS.gene066119:intron |
| ACACCAAGAGAGGTGTACAT+GGG | 0.632419 | 1.4:+47368722 | None:intergenic |
| TTTAGTGAAACGCAATCCAG+TGG | 0.635182 | 1.4:+47368820 | None:intergenic |
| TTGGACTGGTTACACCTGCA+GGG | 0.646148 | 1.4:-47368176 | MS.gene066119:CDS |
| AGAGTCAACATCTAGGCGCA+AGG | 0.652247 | 1.4:-47369795 | MS.gene066119:CDS |
| GCTGATGATAATGTTCAGGA+AGG | 0.654350 | 1.4:-47369773 | MS.gene066119:CDS |
| CCTGGTAATGACACCAAGAG+AGG | 0.664047 | 1.4:+47368712 | None:intergenic |
| TTAGTGAAACGCAATCCAGT+GGG | 0.670436 | 1.4:+47368821 | None:intergenic |
| CGGTCTATATGATCTCCTTG+AGG | 0.680493 | 1.4:+47370329 | None:intergenic |
| CACCAAGAGAGGTGTACATG+GGG | 0.684428 | 1.4:+47368723 | None:intergenic |
| GGGTTTCGTGATCGAAACGG+CGG | 0.704227 | 1.4:+47370288 | None:intergenic |
| TGAAGATGAAATGTTCAAAG+TGG | 0.707953 | 1.4:-47369372 | MS.gene066119:CDS |
| CCTGCAGGGAAAGTTGTGTG+GGG | 0.734788 | 1.4:-47368162 | MS.gene066119:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTATTTCTTAATTAT+AGG | - | chr1.4:47369323-47369342 | MS.gene066119:intron | 10.0% |
| !!! | TAAGAAATAAACATATTTTC+TGG | + | chr1.4:47369318-47369337 | None:intergenic | 15.0% |
| !! | AAAACAACTTAGAACTTATA+TGG | - | chr1.4:47370050-47370069 | MS.gene066119:CDS | 20.0% |
| !! | ACATTCAATCTTGAAATTAT+TGG | - | chr1.4:47369706-47369725 | MS.gene066119:intron | 20.0% |
| !! | ACGTTATTATAACTCAAAAA+AGG | + | chr1.4:47369041-47369060 | None:intergenic | 20.0% |
| !! | ATATTGTCATAAATCTAACT+GGG | - | chr1.4:47368333-47368352 | MS.gene066119:intron | 20.0% |
| !! | GCATAAAATGTTAAAGTAAT+TGG | + | chr1.4:47368307-47368326 | None:intergenic | 20.0% |
| !! | TATATTGTCATAAATCTAAC+TGG | - | chr1.4:47368332-47368351 | MS.gene066119:intron | 20.0% |
| !! | TATTGTTAGTATCAAATTCA+TGG | - | chr1.4:47369214-47369233 | MS.gene066119:intron | 20.0% |
| !! | TGTTATATTTCATGTGTTTA+TGG | - | chr1.4:47368488-47368507 | MS.gene066119:intron | 20.0% |
| !!! | TTTTGATGTTATCATATGAT+GGG | - | chr1.4:47369405-47369424 | MS.gene066119:intron | 20.0% |
| ! | AAGAAAAAACAAATACAGAG+TGG | + | chr1.4:47368979-47368998 | None:intergenic | 25.0% |
| ! | AAGAGTAAGTATTACATCTA+TGG | - | chr1.4:47369141-47369160 | MS.gene066119:intron | 25.0% |
| ! | AATACATTGTAAGCACATTA+CGG | - | chr1.4:47369469-47369488 | MS.gene066119:intron | 25.0% |
| ! | ACATAAACATCATCAAATGA+AGG | + | chr1.4:47368030-47368049 | None:intergenic | 25.0% |
| ! | ACGAAACCAAAATCAAAATA+GGG | + | chr1.4:47368100-47368119 | None:intergenic | 25.0% |
| ! | AGAAAAAACAAATACAGAGT+GGG | + | chr1.4:47368978-47368997 | None:intergenic | 25.0% |
| ! | ATAAACATCATCAAATGAAG+GGG | + | chr1.4:47368028-47368047 | None:intergenic | 25.0% |
| ! | ATTATTTGGCACTTATATCT+TGG | - | chr1.4:47370338-47370357 | MS.gene066119:intron | 25.0% |
| ! | CATAAACATCATCAAATGAA+GGG | + | chr1.4:47368029-47368048 | None:intergenic | 25.0% |
| ! | GAATCATTATCAAAATGTGT+TGG | - | chr1.4:47370231-47370250 | MS.gene066119:intron | 25.0% |
| ! | GTTGATGTTAGATAATAAGT+AGG | - | chr1.4:47368574-47368593 | MS.gene066119:intron | 25.0% |
| ! | TATTCTATGAGCAATTAACA+AGG | - | chr1.4:47370144-47370163 | MS.gene066119:intron | 25.0% |
| ! | TTACAAAAGCAACATTTGTT+GGG | - | chr1.4:47369584-47369603 | MS.gene066119:CDS | 25.0% |
| ! | TTTAACTGATATTGATGCAT+TGG | - | chr1.4:47370381-47370400 | MS.gene066119:intron | 25.0% |
| !! | ATACTTACTCTTTCTTTTAC+CGG | + | chr1.4:47369133-47369152 | None:intergenic | 25.0% |
| !! | TTGGATTTTTATATGAATGC+AGG | - | chr1.4:47370400-47370419 | MS.gene066119:intron | 25.0% |
| !!! | AAATATAGCTTTAGTCTGTT+TGG | - | chr1.4:47369918-47369937 | MS.gene066119:intron | 25.0% |
| !!! | GTTTTGATGTTATCATATGA+TGG | - | chr1.4:47369404-47369423 | MS.gene066119:intron | 25.0% |
| !!! | TAAGTAGGTTTTGATAGATA+TGG | - | chr1.4:47368589-47368608 | MS.gene066119:intron | 25.0% |
| !!! | TTACATCCCTATTTTGATTT+TGG | - | chr1.4:47368091-47368110 | MS.gene066119:intron | 25.0% |
| AAAACACAATGACTTAGAGT+TGG | + | chr1.4:47369389-47369408 | None:intergenic | 30.0% | |
| AAGTACGTGAGTAAATGAAA+AGG | + | chr1.4:47370189-47370208 | None:intergenic | 30.0% | |
| ACAGTAACAGAAAATTCTTG+AGG | + | chr1.4:47368063-47368082 | None:intergenic | 30.0% | |
| AGTACGTGAGTAAATGAAAA+GGG | + | chr1.4:47370188-47370207 | None:intergenic | 30.0% | |
| ATACATTGTAAGCACATTAC+GGG | - | chr1.4:47369470-47369489 | MS.gene066119:intron | 30.0% | |
| ATATCTTGGTTTCATCATCA+TGG | - | chr1.4:47370352-47370371 | MS.gene066119:intron | 30.0% | |
| ATCAATATGCATGCAATCTA+AGG | + | chr1.4:47369497-47369516 | None:intergenic | 30.0% | |
| ATGTGATGACATGATTGAAA+TGG | - | chr1.4:47369189-47369208 | MS.gene066119:intron | 30.0% | |
| ATTTCAATCATGTCATCACA+TGG | + | chr1.4:47369190-47369209 | None:intergenic | 30.0% | |
| ATTTCATGCACTTCTAATTG+AGG | - | chr1.4:47369807-47369826 | MS.gene066119:CDS | 30.0% | |
| CAAGAAAAATTATGCCGAAA+AGG | - | chr1.4:47368410-47368429 | MS.gene066119:intron | 30.0% | |
| CTACATCCATAAACAAAAAG+GGG | + | chr1.4:47369295-47369314 | None:intergenic | 30.0% | |
| GACGAAACCAAAATCAAAAT+AGG | + | chr1.4:47368101-47368120 | None:intergenic | 30.0% | |
| GCTACATCCATAAACAAAAA+GGG | + | chr1.4:47369296-47369315 | None:intergenic | 30.0% | |
| GTTACAAAAGCAACATTTGT+TGG | - | chr1.4:47369583-47369602 | MS.gene066119:CDS | 30.0% | |
| TGAAGATGAAATGTTCAAAG+TGG | - | chr1.4:47369101-47369120 | MS.gene066119:intron | 30.0% | |
| TGTGATGACATGATTGAAAT+GGG | - | chr1.4:47369190-47369209 | MS.gene066119:intron | 30.0% | |
| TTAGTGTATTCAAGAGTTGT+TGG | - | chr1.4:47368552-47368571 | MS.gene066119:intron | 30.0% | |
| ! | ATGTGTATTTTCATTTCCTC+AGG | - | chr1.4:47369065-47369084 | MS.gene066119:intron | 30.0% |
| ! | CTTTTCGGCATAATTTTTCT+TGG | + | chr1.4:47368412-47368431 | None:intergenic | 30.0% |
| ! | GGCTTCTAGTATTATGATTT+TGG | - | chr1.4:47369162-47369181 | MS.gene066119:intron | 30.0% |
| ! | TGAGATGCTGAAATTTTTGT+GGG | - | chr1.4:47369347-47369366 | MS.gene066119:intron | 30.0% |
| ! | TTATGCAACCATCATTTTCT+GGG | + | chr1.4:47370450-47370469 | None:intergenic | 30.0% |
| ! | TTGAATGTGCATTTAAGTTC+AGG | + | chr1.4:47369694-47369713 | None:intergenic | 30.0% |
| ! | TTGAGATGCTGAAATTTTTG+TGG | - | chr1.4:47369346-47369365 | MS.gene066119:intron | 30.0% |
| ! | TTTATGCAACCATCATTTTC+TGG | + | chr1.4:47370451-47370470 | None:intergenic | 30.0% |
| ! | TTTTCCGTTCTCACAATTTA+AGG | - | chr1.4:47369837-47369856 | MS.gene066119:intron | 30.0% |
| !! | AAACAGACTATTGGTCTTAA+GGG | - | chr1.4:47368375-47368394 | MS.gene066119:intron | 30.0% |
| !! | AAATGTGTTGGTCATTTTCT+TGG | - | chr1.4:47370243-47370262 | MS.gene066119:CDS | 30.0% |
| !! | GTTGTTTTCATAATCTATCC+TGG | + | chr1.4:47370038-47370057 | None:intergenic | 30.0% |
| !! | TTTGTATCATTTTAGCCTCA+AGG | - | chr1.4:47368129-47368148 | MS.gene066119:intron | 30.0% |
| AACAAATACAGAGTGGGAAT+TGG | + | chr1.4:47368972-47368991 | None:intergenic | 35.0% | |
| AGACTGTTTGAGAGAGTTTA+TGG | - | chr1.4:47369982-47370001 | MS.gene066119:intron | 35.0% | |
| AGTGATTGAAAAGGTCATGT+GGG | + | chr1.4:47369876-47369895 | None:intergenic | 35.0% | |
| ATCCATAAACAAAAAGGGGA+GGG | + | chr1.4:47369291-47369310 | None:intergenic | 35.0% | |
| ATTCGAGTGAAACAGACTAT+TGG | - | chr1.4:47368366-47368385 | MS.gene066119:intron | 35.0% | |
| CACCATTAAGCAAAAAAGGA+AGG | - | chr1.4:47368878-47368897 | MS.gene066119:CDS | 35.0% | |
| CTTTAGCAAAGAAAGAAGCA+GGG | - | chr1.4:47368996-47369015 | MS.gene066119:intron | 35.0% | |
| GAAGCAGATCTGATTGTATA+TGG | - | chr1.4:47369525-47369544 | MS.gene066119:intron | 35.0% | |
| GACCGTCACATAAAAGAAAA+TGG | - | chr1.4:47368162-47368181 | MS.gene066119:intron | 35.0% | |
| GATGCCTTAAATTGTGAGAA+CGG | + | chr1.4:47369844-47369863 | None:intergenic | 35.0% | |
| GCAACACCATTAAGCAAAAA+AGG | - | chr1.4:47368874-47368893 | MS.gene066119:CDS | 35.0% | |
| GGCTACATCCATAAACAAAA+AGG | + | chr1.4:47369297-47369316 | None:intergenic | 35.0% | |
| GTACATGTCAGTGATTGAAA+AGG | + | chr1.4:47369885-47369904 | None:intergenic | 35.0% | |
| TAAATGAAAAGGGTTCTGTG+TGG | + | chr1.4:47370178-47370197 | None:intergenic | 35.0% | |
| TAAGCAAAAAAGGAAGGAGA+AGG | - | chr1.4:47368884-47368903 | MS.gene066119:CDS | 35.0% | |
| TACATTGTAAGCACATTACG+GGG | - | chr1.4:47369471-47369490 | MS.gene066119:intron | 35.0% | |
| TCGATAGAAGAAGAGGAAAA+GGG | + | chr1.4:47368273-47368292 | None:intergenic | 35.0% | |
| TCTTTAGCAAAGAAAGAAGC+AGG | - | chr1.4:47368995-47369014 | MS.gene066119:intron | 35.0% | |
| TTCGATAGAAGAAGAGGAAA+AGG | + | chr1.4:47368274-47368293 | None:intergenic | 35.0% | |
| TTCTTGGTTACTGTGATTTC+AGG | - | chr1.4:47370259-47370278 | MS.gene066119:CDS | 35.0% | |
| TTGTGTGGGGTAAGATTATT+TGG | - | chr1.4:47370324-47370343 | MS.gene066119:CDS | 35.0% | |
| ! | AAAGTGTTCGATAGAAGAAG+AGG | + | chr1.4:47368280-47368299 | None:intergenic | 35.0% |
| ! | ATCATTTTGCAGCTAAGCAA+TGG | - | chr1.4:47369551-47369570 | MS.gene066119:intron | 35.0% |
| !! | GAAACAGACTATTGGTCTTA+AGG | - | chr1.4:47368374-47368393 | MS.gene066119:intron | 35.0% |
| !! | GGCCATTTTCTTTTATGTGA+CGG | + | chr1.4:47368167-47368186 | None:intergenic | 35.0% |
| !!! | CTCCTTCCTTTTTTGCTTAA+TGG | + | chr1.4:47368883-47368902 | None:intergenic | 35.0% |
| AAAAAAGGAAGGAGAAGGCT+GGG | - | chr1.4:47368889-47368908 | MS.gene066119:CDS | 40.0% | |
| AACATTTCATCTTCAGCCAC+AGG | + | chr1.4:47369096-47369115 | None:intergenic | 40.0% | |
| AACTGTCTTCCAAAACAGCA+TGG | + | chr1.4:47368789-47368808 | None:intergenic | 40.0% | |
| AAGCAGGGAAAGACATGAAA+CGG | - | chr1.4:47369011-47369030 | MS.gene066119:intron | 40.0% | |
| ACCAACAACCCAGAAAATGA+TGG | - | chr1.4:47370439-47370458 | MS.gene066119:intron | 40.0% | |
| AGCTAAGCAATGGAAGAGAA+TGG | - | chr1.4:47369561-47369580 | MS.gene066119:CDS | 40.0% | |
| AGGAAAAGGGTTAAACCTTC+TGG | + | chr1.4:47368260-47368279 | None:intergenic | 40.0% | |
| ATGAATCGCTCATACTTTGG+TGG | + | chr1.4:47369628-47369647 | None:intergenic | 40.0% | |
| CAGTGATTGAAAAGGTCATG+TGG | + | chr1.4:47369877-47369896 | None:intergenic | 40.0% | |
| CATCCATAAACAAAAAGGGG+AGG | + | chr1.4:47369292-47369311 | None:intergenic | 40.0% | |
| CGAATGAATCGCTCATACTT+TGG | + | chr1.4:47369631-47369650 | None:intergenic | 40.0% | |
| GGAAAAGGGTTAAACCTTCT+GGG | + | chr1.4:47368259-47368278 | None:intergenic | 40.0% | |
| GGAGTGAAGAAAAACCCTAA+TGG | - | chr1.4:47369727-47369746 | MS.gene066119:CDS | 40.0% | |
| TACCAGGGGATCTATAATTG+AGG | - | chr1.4:47369777-47369796 | MS.gene066119:CDS | 40.0% | |
| TACCTCAATTATAGATCCCC+TGG | + | chr1.4:47369782-47369801 | None:intergenic | 40.0% | |
| TCACGATCCAAAAGATAAGC+AGG | + | chr1.4:47368733-47368752 | None:intergenic | 40.0% | |
| TCCATAAACAAAAAGGGGAG+GGG | + | chr1.4:47369290-47369309 | None:intergenic | 40.0% | |
| TGAAAACACAACCAGAGCAA+AGG | - | chr1.4:47368750-47368769 | MS.gene066119:CDS | 40.0% | |
| TGAATGTGCAATCTCACCTT+AGG | + | chr1.4:47368933-47368952 | None:intergenic | 40.0% | |
| TGCATGAAGAGTCAACATCT+AGG | - | chr1.4:47368671-47368690 | MS.gene066119:intron | 40.0% | |
| TTAGTGAAACGCAATCCAGT+GGG | + | chr1.4:47369655-47369674 | None:intergenic | 40.0% | |
| TTGATTCTCTTGCACACTCT+AGG | - | chr1.4:47368816-47368835 | MS.gene066119:CDS | 40.0% | |
| TTTAGTGAAACGCAATCCAG+TGG | + | chr1.4:47369656-47369675 | None:intergenic | 40.0% | |
| ! | ACCATCATTTTCTGGGTTGT+TGG | + | chr1.4:47370443-47370462 | None:intergenic | 40.0% |
| ! | AGCTGTTCCTGCTTATCTTT+TGG | - | chr1.4:47368723-47368742 | MS.gene066119:CDS | 40.0% |
| ! | CAAGGCTGATGATAATGTTC+AGG | - | chr1.4:47368696-47368715 | MS.gene066119:intron | 40.0% |
| ! | CCTTTTCATCTGTGCCTTTT+CGG | + | chr1.4:47368427-47368446 | None:intergenic | 40.0% |
| ! | GATGCTGAAATTTTTGTGGG+CGG | - | chr1.4:47369350-47369369 | MS.gene066119:intron | 40.0% |
| ! | GCTGATGATAATGTTCAGGA+AGG | - | chr1.4:47368700-47368719 | MS.gene066119:CDS | 40.0% |
| ! | GGTTCACAACCACTCTAAAA+AGG | - | chr1.4:47368233-47368252 | MS.gene066119:intron | 40.0% |
| ! | TACTCTTTCTTTTACCGGTG+CGG | + | chr1.4:47369128-47369147 | None:intergenic | 40.0% |
| !! | CTATTGGTCTTAAGGGAAAG+AGG | - | chr1.4:47368382-47368401 | MS.gene066119:intron | 40.0% |
| !! | CTCATACTTTGGTGGTTTTC+TGG | + | chr1.4:47369620-47369639 | None:intergenic | 40.0% |
| ACAATGTTCATACGCTCTCC+AGG | - | chr1.4:47370017-47370036 | MS.gene066119:intron | 45.0% | |
| AGCAGGGAAAGACATGAAAC+GGG | - | chr1.4:47369012-47369031 | MS.gene066119:intron | 45.0% | |
| ATGGGATGTTCCTCTACCTA+AGG | - | chr1.4:47368914-47368933 | MS.gene066119:intron | 45.0% | |
| CAAAAAAGGAAGGAGAAGGC+TGG | - | chr1.4:47368888-47368907 | MS.gene066119:CDS | 45.0% | |
| CGGTCTATATGATCTCCTTG+AGG | + | chr1.4:47368147-47368166 | None:intergenic | 45.0% | |
| GAATGCAGGTAAATATGCCC+AGG | - | chr1.4:47370414-47370433 | MS.gene066119:intron | 45.0% | |
| GCTCTTGTCTGTCAACAGTT+TGG | - | chr1.4:47368645-47368664 | MS.gene066119:intron | 45.0% | |
| GGAGGGGACAAAGAATGATA+AGG | + | chr1.4:47369274-47369293 | None:intergenic | 45.0% | |
| TGCAATCTCACCTTAGGTAG+AGG | + | chr1.4:47368927-47368946 | None:intergenic | 45.0% | |
| ! | AAAGCAACATTTGTTGGGCC+TGG | - | chr1.4:47369589-47369608 | MS.gene066119:CDS | 45.0% |
| ! | ACACCAAGAGAGGTGTACAT+GGG | + | chr1.4:47369754-47369773 | None:intergenic | 45.0% |
| ! | CCGAAAAGGCACAGATGAAA+AGG | - | chr1.4:47368424-47368443 | MS.gene066119:intron | 45.0% |
| !! | CTCTCTTGGTGTCATTACCA+GGG | - | chr1.4:47369762-47369781 | MS.gene066119:CDS | 45.0% |
| !! | GGTGGTTTTCTGGTAAAACC+AGG | + | chr1.4:47369610-47369629 | None:intergenic | 45.0% |
| !! | TCCCCTCCCCTTTTTGTTTA+TGG | - | chr1.4:47369286-47369305 | MS.gene066119:intron | 45.0% |
| !! | TCTCTTGGTGTCATTACCAG+GGG | - | chr1.4:47369763-47369782 | MS.gene066119:CDS | 45.0% |
| !! | TTCTGGGTTGTTGGTAACCT+GGG | + | chr1.4:47370434-47370453 | None:intergenic | 45.0% |
| !! | TTTCTGGGTTGTTGGTAACC+TGG | + | chr1.4:47370435-47370454 | None:intergenic | 45.0% |
| ACCTGCAGGGAAAGTTGTGT+GGG | - | chr1.4:47370310-47370329 | MS.gene066119:CDS | 50.0% | |
| AGAGTCAACATCTAGGCGCA+AGG | - | chr1.4:47368678-47368697 | MS.gene066119:intron | 50.0% | |
| AGGTGTACATGGGGCCATTA+GGG | + | chr1.4:47369744-47369763 | None:intergenic | 50.0% | |
| ATGTTCAAAGTGGTCCGCAC+CGG | - | chr1.4:47369111-47369130 | MS.gene066119:intron | 50.0% | |
| ATTTCCTCAGGTACGTCCTG+TGG | - | chr1.4:47369077-47369096 | MS.gene066119:intron | 50.0% | |
| CAGGTGAATGTCAGCGAACT+TGG | - | chr1.4:47370278-47370297 | MS.gene066119:CDS | 50.0% | |
| CGACTGACATACCTTTGCTC+TGG | + | chr1.4:47368764-47368783 | None:intergenic | 50.0% | |
| GAAGGAGAAGGCTGGGAAAT+GGG | - | chr1.4:47368896-47368915 | MS.gene066119:CDS | 50.0% | |
| GAATGTCAGCGAACTTGGAC+TGG | - | chr1.4:47370283-47370302 | MS.gene066119:CDS | 50.0% | |
| GCAGGGAAAGACATGAAACG+GGG | - | chr1.4:47369013-47369032 | MS.gene066119:intron | 50.0% | |
| TGCGGGTTTCGTGATCGAAA+CGG | + | chr1.4:47368191-47368210 | None:intergenic | 50.0% | |
| ! | CACCAAGAGAGGTGTACATG+GGG | + | chr1.4:47369753-47369772 | None:intergenic | 50.0% |
| ! | CCACTCTAAAAAGGCCCAGA+AGG | - | chr1.4:47368242-47368261 | MS.gene066119:intron | 50.0% |
| ! | CCTGGTAATGACACCAAGAG+AGG | + | chr1.4:47369764-47369783 | None:intergenic | 50.0% |
| ! | GACACCAAGAGAGGTGTACA+TGG | + | chr1.4:47369755-47369774 | None:intergenic | 50.0% |
| !! | CCTCTCTTGGTGTCATTACC+AGG | - | chr1.4:47369761-47369780 | MS.gene066119:CDS | 50.0% |
| !! | CCTTCTGGGCCTTTTTAGAG+TGG | + | chr1.4:47368245-47368264 | None:intergenic | 50.0% |
| !! | TCAGTCGTGCCATGCTGTTT+TGG | - | chr1.4:47368777-47368796 | MS.gene066119:CDS | 50.0% |
| !! | TTGGACTGGTTACACCTGCA+GGG | - | chr1.4:47370297-47370316 | MS.gene066119:CDS | 50.0% |
| CACCTGCAGGGAAAGTTGTG+TGG | - | chr1.4:47370309-47370328 | MS.gene066119:CDS | 55.0% | |
| CCTGCAGGGAAAGTTGTGTG+GGG | - | chr1.4:47370311-47370330 | MS.gene066119:CDS | 55.0% | |
| GAGCGATTCATTCGTCCCAC+TGG | - | chr1.4:47369637-47369656 | MS.gene066119:intron | 55.0% | |
| GAGGTGTACATGGGGCCATT+AGG | + | chr1.4:47369745-47369764 | None:intergenic | 55.0% | |
| GGAAGGAGAAGGCTGGGAAA+TGG | - | chr1.4:47368895-47368914 | MS.gene066119:CDS | 55.0% | |
| GGGTTTCGTGATCGAAACGG+CGG | + | chr1.4:47368188-47368207 | None:intergenic | 55.0% | |
| !! | CTTGGACTGGTTACACCTGC+AGG | - | chr1.4:47370296-47370315 | MS.gene066119:CDS | 55.0% |
| AACCCGCAAGCGCAAGAGAG+AGG | - | chr1.4:47368203-47368222 | MS.gene066119:intron | 60.0% | |
| AGCCTCTCTCTTGCGCTTGC+GGG | + | chr1.4:47368208-47368227 | None:intergenic | 60.0% | |
| CCCCACACAACTTTCCCTGC+AGG | + | chr1.4:47370314-47370333 | None:intergenic | 60.0% | |
| GAGCCTCTCTCTTGCGCTTG+CGG | + | chr1.4:47368209-47368228 | None:intergenic | 60.0% | |
| GGCCCCATGTACACCTCTCT+TGG | - | chr1.4:47369748-47369767 | MS.gene066119:CDS | 60.0% | |
| TCAGCCACAGGACGTACCTG+AGG | + | chr1.4:47369084-47369103 | None:intergenic | 60.0% | |
| GCGCAAGAGAGAGGCTCGTG+AGG | - | chr1.4:47368212-47368231 | MS.gene066119:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 47368006 | 47370489 | 47368006 | ID=MS.gene066119 |
| chr1.4 | mRNA | 47368006 | 47370489 | 47368006 | ID=MS.gene066119.t1;Parent=MS.gene066119 |
| chr1.4 | exon | 47370487 | 47370489 | 47370487 | ID=MS.gene066119.t1.exon1;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47370487 | 47370489 | 47370487 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47370232 | 47370351 | 47370232 | ID=MS.gene066119.t1.exon2;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47370232 | 47370351 | 47370232 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47370047 | 47370114 | 47370047 | ID=MS.gene066119.t1.exon3;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47370047 | 47370114 | 47370047 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47369724 | 47369832 | 47369724 | ID=MS.gene066119.t1.exon4;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47369724 | 47369832 | 47369724 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47369560 | 47369628 | 47369560 | ID=MS.gene066119.t1.exon5;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47369560 | 47369628 | 47369560 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47369351 | 47369408 | 47369351 | ID=MS.gene066119.t1.exon6;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47369351 | 47369408 | 47369351 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47368697 | 47368932 | 47368697 | ID=MS.gene066119.t1.exon7;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47368697 | 47368932 | 47368697 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47368163 | 47368214 | 47368163 | ID=MS.gene066119.t1.exon8;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47368163 | 47368214 | 47368163 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| chr1.4 | exon | 47368006 | 47368073 | 47368006 | ID=MS.gene066119.t1.exon9;Parent=MS.gene066119.t1 |
| chr1.4 | CDS | 47368006 | 47368073 | 47368006 | ID=cds.MS.gene066119.t1;Parent=MS.gene066119.t1 |
| Gene Sequence |
| Protein sequence |
