Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067456.t1 | KEH39615.1 | 89.3 | 289 | 28 | 3 | 1 | 289 | 1 | 286 | 3.80E-132 | 481.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067456.t1 | Q9T072 | 31.6 | 301 | 178 | 6 | 6 | 292 | 21 | 307 | 4.2e-23 | 110.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067456.t1 | A0A072VN90 | 89.3 | 289 | 28 | 3 | 1 | 289 | 1 | 286 | 2.7e-132 | 481.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene067456.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049615 | MS.gene067456 | 0.816827 | 4.53E-52 | -1.69E-46 |
MS.gene050122 | MS.gene067456 | 0.823988 | 1.03E-53 | -1.69E-46 |
MS.gene050502 | MS.gene067456 | 0.817549 | 3.11E-52 | -1.69E-46 |
MS.gene051509 | MS.gene067456 | 0.803309 | 3.71E-49 | -1.69E-46 |
MS.gene053018 | MS.gene067456 | 0.803314 | 3.70E-49 | -1.69E-46 |
MS.gene053436 | MS.gene067456 | 0.823167 | 1.60E-53 | -1.69E-46 |
MS.gene056422 | MS.gene067456 | 0.806861 | 6.70E-50 | -1.69E-46 |
MS.gene057926 | MS.gene067456 | 0.806052 | 9.92E-50 | -1.69E-46 |
MS.gene058183 | MS.gene067456 | 0.826227 | 3.05E-54 | -1.69E-46 |
MS.gene059367 | MS.gene067456 | 0.857192 | 1.93E-62 | -1.69E-46 |
MS.gene059368 | MS.gene067456 | 0.836983 | 6.80E-57 | -1.69E-46 |
MS.gene060482 | MS.gene067456 | 0.842251 | 2.90E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067456.t1 | MTR_2g104490 | 89.273 | 289 | 28 | 3 | 1 | 289 | 1 | 286 | 0.0 | 519 |
MS.gene067456.t1 | MTR_2g104490 | 89.273 | 289 | 28 | 3 | 1 | 289 | 1 | 286 | 0.0 | 519 |
MS.gene067456.t1 | MTR_2g104550 | 82.653 | 294 | 42 | 5 | 1 | 289 | 1 | 290 | 7.17e-164 | 458 |
MS.gene067456.t1 | MTR_4g009540 | 41.818 | 330 | 130 | 11 | 1 | 289 | 1 | 309 | 6.77e-64 | 204 |
MS.gene067456.t1 | MTR_4g009540 | 41.818 | 330 | 130 | 11 | 1 | 289 | 1 | 309 | 1.18e-63 | 204 |
MS.gene067456.t1 | MTR_4g009110 | 42.012 | 338 | 137 | 11 | 1 | 289 | 1 | 328 | 5.90e-62 | 200 |
MS.gene067456.t1 | MTR_8g009020 | 48.649 | 222 | 101 | 6 | 77 | 289 | 84 | 301 | 3.02e-51 | 172 |
MS.gene067456.t1 | MTR_2g104500 | 40.959 | 271 | 128 | 7 | 23 | 289 | 8 | 250 | 2.03e-48 | 163 |
MS.gene067456.t1 | MTR_7g080780 | 36.991 | 319 | 159 | 7 | 1 | 289 | 1 | 307 | 1.14e-46 | 160 |
MS.gene067456.t1 | MTR_7g080780 | 37.671 | 292 | 143 | 5 | 28 | 289 | 12 | 294 | 2.82e-46 | 159 |
MS.gene067456.t1 | MTR_8g069740 | 39.024 | 287 | 144 | 11 | 20 | 293 | 1 | 269 | 8.01e-44 | 150 |
MS.gene067456.t1 | MTR_8g009010 | 39.855 | 276 | 112 | 9 | 32 | 289 | 11 | 250 | 5.74e-41 | 145 |
MS.gene067456.t1 | MTR_2g104530 | 47.283 | 184 | 91 | 3 | 109 | 289 | 72 | 252 | 5.28e-40 | 141 |
MS.gene067456.t1 | MTR_5g014600 | 38.676 | 287 | 126 | 11 | 42 | 289 | 38 | 313 | 5.17e-39 | 140 |
MS.gene067456.t1 | MTR_5g014520 | 41.441 | 222 | 101 | 5 | 82 | 289 | 102 | 308 | 6.04e-39 | 140 |
MS.gene067456.t1 | MTR_6g047570 | 39.300 | 257 | 129 | 9 | 45 | 289 | 69 | 310 | 1.09e-35 | 131 |
MS.gene067456.t1 | MTR_0246s0020 | 38.819 | 237 | 119 | 6 | 82 | 293 | 122 | 357 | 5.80e-35 | 130 |
MS.gene067456.t1 | MTR_0246s0020 | 39.056 | 233 | 116 | 6 | 82 | 289 | 122 | 353 | 1.54e-34 | 129 |
MS.gene067456.t1 | MTR_4g067010 | 40.741 | 189 | 105 | 3 | 106 | 289 | 109 | 295 | 3.89e-34 | 127 |
MS.gene067456.t1 | MTR_0250s0040 | 42.690 | 171 | 92 | 4 | 123 | 289 | 71 | 239 | 1.50e-33 | 124 |
MS.gene067456.t1 | MTR_0011s0260 | 40.196 | 204 | 110 | 4 | 97 | 289 | 132 | 334 | 3.15e-33 | 125 |
MS.gene067456.t1 | MTR_4g066460 | 37.083 | 240 | 132 | 6 | 59 | 289 | 74 | 303 | 1.08e-32 | 123 |
MS.gene067456.t1 | MTR_2g104560 | 42.857 | 175 | 86 | 3 | 122 | 289 | 36 | 203 | 1.24e-32 | 120 |
MS.gene067456.t1 | MTR_2g010450 | 46.875 | 160 | 76 | 3 | 136 | 289 | 173 | 329 | 2.79e-32 | 122 |
MS.gene067456.t1 | MTR_4g092700 | 40.217 | 184 | 106 | 2 | 110 | 289 | 126 | 309 | 6.77e-32 | 121 |
MS.gene067456.t1 | MTR_0011s0210 | 40.196 | 204 | 110 | 4 | 97 | 289 | 132 | 334 | 7.55e-32 | 121 |
MS.gene067456.t1 | MTR_5g014640 | 34.043 | 235 | 143 | 5 | 70 | 300 | 87 | 313 | 2.31e-31 | 119 |
MS.gene067456.t1 | MTR_4g097940 | 43.023 | 172 | 88 | 4 | 123 | 289 | 138 | 304 | 1.41e-30 | 117 |
MS.gene067456.t1 | MTR_4g097920 | 42.442 | 172 | 89 | 4 | 123 | 289 | 123 | 289 | 6.09e-30 | 115 |
MS.gene067456.t1 | MTR_2g104650 | 34.050 | 279 | 143 | 10 | 20 | 289 | 1 | 247 | 7.61e-30 | 114 |
MS.gene067456.t1 | MTR_4g097920 | 42.442 | 172 | 89 | 4 | 123 | 289 | 138 | 304 | 8.38e-30 | 115 |
MS.gene067456.t1 | MTR_5g014560 | 34.155 | 284 | 136 | 10 | 23 | 289 | 33 | 282 | 1.12e-28 | 112 |
MS.gene067456.t1 | MTR_4g097950 | 38.265 | 196 | 109 | 2 | 106 | 289 | 33 | 228 | 6.99e-28 | 108 |
MS.gene067456.t1 | MTR_2g104590 | 36.190 | 210 | 109 | 6 | 85 | 289 | 13 | 202 | 9.85e-28 | 107 |
MS.gene067456.t1 | MTR_4g066380 | 36.325 | 234 | 131 | 6 | 59 | 289 | 82 | 300 | 3.68e-27 | 108 |
MS.gene067456.t1 | MTR_0246s0050 | 38.182 | 165 | 93 | 3 | 127 | 289 | 138 | 295 | 1.09e-26 | 107 |
MS.gene067456.t1 | MTR_4g098035 | 38.182 | 165 | 93 | 3 | 127 | 289 | 159 | 316 | 1.45e-26 | 107 |
MS.gene067456.t1 | MTR_7g451650 | 43.077 | 130 | 60 | 2 | 163 | 289 | 57 | 175 | 5.18e-22 | 91.7 |
MS.gene067456.t1 | MTR_7g451650 | 43.077 | 130 | 60 | 2 | 163 | 289 | 57 | 175 | 7.61e-22 | 90.9 |
MS.gene067456.t1 | MTR_7g050350 | 41.935 | 124 | 58 | 2 | 169 | 289 | 1 | 113 | 3.61e-19 | 82.4 |
MS.gene067456.t1 | MTR_7g451650 | 41.935 | 124 | 58 | 2 | 169 | 289 | 1 | 113 | 3.61e-19 | 82.4 |
MS.gene067456.t1 | MTR_4g009420 | 39.370 | 127 | 61 | 2 | 163 | 289 | 65 | 175 | 4.98e-17 | 78.2 |
MS.gene067456.t1 | MTR_4g009420 | 39.370 | 127 | 61 | 2 | 163 | 289 | 65 | 175 | 7.73e-17 | 77.8 |
MS.gene067456.t1 | MTR_4g009510 | 38.462 | 143 | 72 | 4 | 151 | 289 | 53 | 183 | 1.12e-16 | 77.4 |
MS.gene067456.t1 | MTR_8g067280 | 25.781 | 256 | 156 | 6 | 46 | 274 | 361 | 609 | 1.38e-15 | 77.4 |
MS.gene067456.t1 | MTR_6g047550 | 46.835 | 79 | 42 | 0 | 140 | 218 | 173 | 251 | 2.40e-15 | 75.1 |
MS.gene067456.t1 | MTR_5g030430 | 25.532 | 235 | 144 | 4 | 67 | 274 | 410 | 640 | 2.57e-15 | 76.6 |
MS.gene067456.t1 | MTR_8g024790 | 29.310 | 174 | 108 | 6 | 107 | 274 | 264 | 428 | 6.78e-15 | 75.1 |
MS.gene067456.t1 | MTR_5g014550 | 39.516 | 124 | 69 | 3 | 170 | 289 | 54 | 175 | 1.60e-14 | 71.2 |
MS.gene067456.t1 | MTR_8g027495 | 31.496 | 127 | 78 | 4 | 139 | 265 | 457 | 574 | 7.11e-13 | 69.3 |
MS.gene067456.t1 | MTR_7g117670 | 34.211 | 114 | 61 | 2 | 139 | 248 | 401 | 504 | 2.21e-12 | 67.8 |
MS.gene067456.t1 | MTR_1g072320 | 25.949 | 158 | 107 | 2 | 124 | 271 | 454 | 611 | 6.67e-12 | 66.2 |
MS.gene067456.t1 | MTR_8g024770 | 25.000 | 176 | 116 | 6 | 108 | 274 | 251 | 419 | 3.42e-11 | 63.9 |
MS.gene067456.t1 | MTR_7g096350 | 27.368 | 190 | 116 | 4 | 30 | 216 | 263 | 433 | 9.82e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067456.t1 | AT4G37850 | 39.604 | 202 | 106 | 5 | 97 | 292 | 116 | 307 | 7.00e-34 | 126 |
MS.gene067456.t1 | AT4G37850 | 39.604 | 202 | 106 | 5 | 97 | 292 | 116 | 307 | 7.00e-34 | 126 |
MS.gene067456.t1 | AT2G22750 | 37.611 | 226 | 120 | 6 | 78 | 290 | 65 | 282 | 7.16e-30 | 115 |
MS.gene067456.t1 | AT2G22750 | 37.611 | 226 | 120 | 6 | 78 | 290 | 93 | 310 | 9.70e-30 | 115 |
MS.gene067456.t1 | AT2G22750 | 37.611 | 226 | 120 | 6 | 78 | 290 | 89 | 306 | 1.11e-29 | 115 |
MS.gene067456.t1 | AT2G22750 | 37.333 | 225 | 120 | 6 | 78 | 289 | 65 | 281 | 2.78e-29 | 114 |
MS.gene067456.t1 | AT2G22750 | 37.333 | 225 | 120 | 6 | 78 | 289 | 93 | 309 | 3.99e-29 | 114 |
MS.gene067456.t1 | AT2G22760 | 42.331 | 163 | 89 | 2 | 132 | 289 | 111 | 273 | 2.19e-28 | 110 |
MS.gene067456.t1 | AT2G22760 | 42.331 | 163 | 89 | 2 | 132 | 289 | 111 | 273 | 2.74e-28 | 110 |
MS.gene067456.t1 | AT2G22770 | 37.725 | 167 | 87 | 2 | 140 | 289 | 132 | 298 | 4.69e-23 | 97.4 |
MS.gene067456.t1 | AT5G46760 | 28.800 | 250 | 148 | 9 | 41 | 274 | 320 | 555 | 5.90e-17 | 81.6 |
MS.gene067456.t1 | AT4G17880 | 27.650 | 217 | 141 | 5 | 63 | 274 | 347 | 552 | 1.73e-16 | 80.1 |
MS.gene067456.t1 | AT4G09820 | 33.803 | 142 | 76 | 2 | 130 | 271 | 353 | 476 | 3.57e-16 | 79.0 |
MS.gene067456.t1 | AT2G46510 | 36.800 | 125 | 62 | 4 | 123 | 246 | 377 | 485 | 2.11e-14 | 73.9 |
MS.gene067456.t1 | AT1G32640 | 28.652 | 178 | 108 | 7 | 129 | 291 | 440 | 613 | 6.49e-13 | 69.3 |
Find 56 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCTTCCCTTCCTCCAAC+TGG | 0.191139 | 2.4:+833371 | None:intergenic |
CAGCAACCTGTTACATATTC+TGG | 0.210205 | 2.4:-905881 | MS.gene067456:CDS |
GCTAGCAGTGTATTGGCTTT+TGG | 0.252967 | 2.4:-834856 | MS.gene067456:CDS |
TGGAGCAATCATGGGAAAAT+TGG | 0.268938 | 2.4:-906173 | MS.gene067456:CDS |
GATTCTTTGCTATTCTTGTT+TGG | 0.275304 | 2.4:+835084 | None:intergenic |
TTACTTCTACTCTTTGTTCT+TGG | 0.277856 | 2.4:+905692 | None:intergenic |
ACTTCTTGTTCTGATTCTTC+TGG | 0.307827 | 2.4:+905716 | None:intergenic |
TGATGTTAAAGCAAGAATAT+TGG | 0.324656 | 2.4:-834974 | MS.gene067456:CDS |
GCACTTTCAGCTACTATTCC+TGG | 0.324686 | 2.4:-905536 | MS.gene067456:CDS |
TCAGTGTTTGGATCACATTA+TGG | 0.344284 | 2.4:-905600 | MS.gene067456:CDS |
AGTAGTAGTAGCTGGTATTA+TGG | 0.354699 | 2.4:+905742 | None:intergenic |
TAGAAGTGGTTCTCAGTGTT+TGG | 0.364117 | 2.4:-905612 | MS.gene067456:CDS |
TGTCACTGCTAGCAGTGTAT+TGG | 0.365840 | 2.4:-834863 | MS.gene067456:CDS |
TGAGCCATCCATCTCATTAG+AGG | 0.377502 | 2.4:+905844 | None:intergenic |
TTCTTCTCATGGAGCAATCA+TGG | 0.379874 | 2.4:-906182 | None:intergenic |
AAGTAATAATAAGAGGAGTT+TGG | 0.391916 | 2.4:-905675 | MS.gene067456:CDS |
CTGCTTCCAGAATATGTAAC+AGG | 0.414669 | 2.4:+905875 | None:intergenic |
GGAAAATTGGCCTCTTCATT+CGG | 0.420212 | 2.4:-906160 | MS.gene067456:intron |
AGAGTAGAAGTAATAATAAG+AGG | 0.424376 | 2.4:-905682 | MS.gene067456:CDS |
TGGCTTTACTATTGTCGCTC+AGG | 0.443880 | 2.4:-834821 | MS.gene067456:intron |
CTTCTTCCCTTCCTCCAACT+GGG | 0.463799 | 2.4:+833372 | None:intergenic |
TTCTACTCTTCTTTCCACTT+TGG | 0.465419 | 2.4:+905630 | None:intergenic |
ATTATTACCTTCTTCAAGCC+AGG | 0.465921 | 2.4:+905518 | None:intergenic |
AAAGATAGAATAAATGTCCT+TGG | 0.468384 | 2.4:+905776 | None:intergenic |
AGCAAGAATATTGGAAAATG+AGG | 0.474113 | 2.4:-834965 | MS.gene067456:CDS |
TACCACCTCAAATTCTGATC+AGG | 0.481127 | 2.4:-835019 | MS.gene067456:CDS |
ATGGATGGCTCAGATTGCTC+AGG | 0.485183 | 2.4:-905833 | MS.gene067456:CDS |
CCAGTTGGAGGAAGGGAAGA+AGG | 0.509133 | 2.4:-833371 | MS.gene067456:CDS |
TACTATTCCTGGCTTGAAGA+AGG | 0.517604 | 2.4:-905525 | MS.gene067456:intron |
TCTGGTGTAGTAGTAGTAGC+TGG | 0.520741 | 2.4:+905734 | None:intergenic |
TCATAACCCAGTTGGAGGAA+GGG | 0.521814 | 2.4:-833378 | MS.gene067456:CDS |
TCTTCTCATGGAGCAATCAT+GGG | 0.526288 | 2.4:-906181 | None:intergenic |
GCAATCCTGATCAGAATTTG+AGG | 0.532272 | 2.4:+835014 | None:intergenic |
GTCATAACCCAGTTGGAGGA+AGG | 0.543020 | 2.4:-833379 | MS.gene067456:CDS |
AAGAGTCATAACCCAGTTGG+AGG | 0.557437 | 2.4:-833383 | MS.gene067456:CDS |
TCTTTCATCCTCTAATGAGA+TGG | 0.562481 | 2.4:-905852 | MS.gene067456:CDS |
AGTGGAAAGAAGAGTAGAAG+TGG | 0.563816 | 2.4:-905626 | MS.gene067456:CDS |
TAGAATAAATGTCCTTGGAG+TGG | 0.581040 | 2.4:+905781 | None:intergenic |
ATGGACAAGAACTATATACT+TGG | 0.584966 | 2.4:-835162 | MS.gene067456:CDS |
GCAAAAGCAAGTAACCAAAG+TGG | 0.587147 | 2.4:-905644 | MS.gene067456:CDS |
TGGACGGTGTTGATGAAGGA+TGG | 0.592345 | 2.4:+905801 | None:intergenic |
GGAGTGGACGGTGTTGATGA+AGG | 0.594219 | 2.4:+905797 | None:intergenic |
GTTGATGTAGAGAATATGCA+AGG | 0.598569 | 2.4:-905965 | MS.gene067456:CDS |
ATAAATGTCCTTGGAGTGGA+CGG | 0.600736 | 2.4:+905785 | None:intergenic |
CATTCAGATCCACTGTGAGA+AGG | 0.601974 | 2.4:-834938 | MS.gene067456:CDS |
TCATCCTCTAATGAGATGGA+TGG | 0.603818 | 2.4:-905848 | MS.gene067456:CDS |
CTTGCTTTAACATCAAAGAG+TGG | 0.605135 | 2.4:+834982 | None:intergenic |
AATATGTAACAGGTTGCTGA+AGG | 0.616197 | 2.4:+905885 | None:intergenic |
AGTGTTATTACCGAATGAAG+AGG | 0.617526 | 2.4:+906150 | None:intergenic |
CATCAACACCGTCCACTCCA+AGG | 0.620000 | 2.4:-905793 | MS.gene067456:CDS |
AGAACGTGTGAAGGAGCTAG+AGG | 0.643700 | 2.4:-835109 | MS.gene067456:CDS |
ACTACTTCAAGAACGTGTGA+AGG | 0.653803 | 2.4:-835118 | MS.gene067456:CDS |
TGGATGGCTCAGATTGCTCA+GGG | 0.676528 | 2.4:-905832 | MS.gene067456:CDS |
TGTCAATTTCCTTCTCACAG+TGG | 0.679003 | 2.4:+834929 | None:intergenic |
ATCCTGATCAGAATTTGAGG+TGG | 0.691103 | 2.4:+835017 | None:intergenic |
TTGATGTAGAGAATATGCAA+GGG | 0.725229 | 2.4:-905964 | MS.gene067456:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 833367 | 906196 | 833367 | ID=MS.gene067456 |
chr2.4 | mRNA | 833367 | 906196 | 833367 | ID=MS.gene067456.t1;Parent=MS.gene067456 |
chr2.4 | exon | 906161 | 906196 | 906161 | ID=MS.gene067456.t1.exon1;Parent=MS.gene067456.t1 |
chr2.4 | CDS | 906161 | 906196 | 906161 | ID=cds.MS.gene067456.t1;Parent=MS.gene067456.t1 |
chr2.4 | exon | 905526 | 905993 | 905526 | ID=MS.gene067456.t1.exon2;Parent=MS.gene067456.t1 |
chr2.4 | CDS | 905526 | 905993 | 905526 | ID=cds.MS.gene067456.t1;Parent=MS.gene067456.t1 |
chr2.4 | exon | 834822 | 835184 | 834822 | ID=MS.gene067456.t1.exon3;Parent=MS.gene067456.t1 |
chr2.4 | CDS | 834822 | 835184 | 834822 | ID=cds.MS.gene067456.t1;Parent=MS.gene067456.t1 |
chr2.4 | exon | 833367 | 833408 | 833367 | ID=MS.gene067456.t1.exon4;Parent=MS.gene067456.t1 |
chr2.4 | CDS | 833367 | 833408 | 833367 | ID=cds.MS.gene067456.t1;Parent=MS.gene067456.t1 |
Gene Sequence |
Protein sequence |