Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068037.t1 | XP_003608424.1 | 89.7 | 39 | 4 | 0 | 1 | 39 | 1 | 39 | 4.70E-07 | 64.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068037.t1 | G7JV73 | 89.7 | 39 | 4 | 0 | 1 | 39 | 1 | 39 | 3.4e-07 | 64.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050082 | MS.gene068037 | 0.886584 | 3.01E-72 | -1.69E-46 |
MS.gene051138 | MS.gene068037 | 0.813642 | 2.31E-51 | -1.69E-46 |
MS.gene051422 | MS.gene068037 | 0.818172 | 2.25E-52 | -1.69E-46 |
MS.gene053568 | MS.gene068037 | 0.860523 | 1.95E-63 | -1.69E-46 |
MS.gene053569 | MS.gene068037 | 0.831703 | 1.44E-55 | -1.69E-46 |
MS.gene053920 | MS.gene068037 | 0.80531 | 1.42E-49 | -1.69E-46 |
MS.gene056856 | MS.gene068037 | 0.831298 | 1.81E-55 | -1.69E-46 |
MS.gene056857 | MS.gene068037 | 0.804635 | 1.97E-49 | -1.69E-46 |
MS.gene057717 | MS.gene068037 | 0.866267 | 3.23E-65 | -1.69E-46 |
MS.gene058067 | MS.gene068037 | 0.855172 | 7.54E-62 | -1.69E-46 |
MS.gene058068 | MS.gene068037 | 0.860064 | 2.68E-63 | -1.69E-46 |
MS.gene058099 | MS.gene068037 | 0.813678 | 2.27E-51 | -1.69E-46 |
MS.gene059069 | MS.gene068037 | 0.825668 | 4.13E-54 | -1.69E-46 |
MS.gene059070 | MS.gene068037 | 0.822806 | 1.94E-53 | -1.69E-46 |
MS.gene060405 | MS.gene068037 | 0.808528 | 2.96E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068037.t1 | MTR_4g093950 | 91.150 | 113 | 9 | 1 | 1 | 113 | 1 | 112 | 3.37e-47 | 148 |
MS.gene068037.t1 | MTR_4g093940 | 91.818 | 110 | 8 | 1 | 1 | 110 | 1 | 109 | 5.22e-47 | 148 |
MS.gene068037.t1 | MTR_4g093910 | 90.265 | 113 | 10 | 1 | 1 | 113 | 1 | 112 | 3.39e-46 | 146 |
MS.gene068037.t1 | MTR_4g093920 | 89.091 | 110 | 10 | 2 | 1 | 110 | 1 | 108 | 5.30e-45 | 142 |
MS.gene068037.t1 | MTR_5g064530 | 66.013 | 153 | 25 | 5 | 1 | 129 | 1 | 150 | 7.06e-39 | 128 |
MS.gene068037.t1 | MTR_5g064510 | 66.129 | 124 | 21 | 5 | 1 | 106 | 1 | 121 | 9.39e-34 | 115 |
MS.gene068037.t1 | MTR_4g094678 | 74.684 | 79 | 3 | 2 | 17 | 93 | 1 | 64 | 3.64e-26 | 93.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 48 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGATTTCCCTGAGGCATATT+TGG | 0.193132 | 4.3:-20775890 | None:intergenic |
CTTCATCACAACTTTACTTC+TGG | 0.286471 | 4.3:+20775745 | MS.gene068037:CDS |
CAATAGATGGCGAGCTTCTA+AGG | 0.329667 | 4.3:-20775789 | None:intergenic |
GGTGGCAGTGTTGTTGGTTT+TGG | 0.339241 | 4.3:-20775854 | None:intergenic |
GTGTTGTTGTTTGCAATAGA+TGG | 0.376065 | 4.3:-20775802 | None:intergenic |
AGATGGAAGTGTTGGAATAT+TGG | 0.377492 | 4.3:-20775981 | None:intergenic |
GTGGGAATGGTTGGTAAGTT+TGG | 0.380014 | 4.3:-20775827 | None:intergenic |
GAAGGTGGTGGGGAGAGAAA+TGG | 0.390913 | 4.3:-20776079 | None:intergenic |
TGGGGAGAGAAATGGGATGG+AGG | 0.398214 | 4.3:-20776071 | None:intergenic |
AAGGTGGTGGGGAGAGAAAT+GGG | 0.410900 | 4.3:-20776078 | None:intergenic |
GGGAAAGTGGTTGGAATTGA+AGG | 0.421474 | 4.3:-20776049 | None:intergenic |
GTTGGAATTGAAGGAAGGTT+TGG | 0.423898 | 4.3:-20776040 | None:intergenic |
GTTTAAGGGTTAGATGTTGA+AGG | 0.433760 | 4.3:-20776097 | None:intergenic |
TGAGGCATATTTGGAATTGA+AGG | 0.434332 | 4.3:-20775881 | None:intergenic |
GGGTTAGATGTTGAAGGTGG+TGG | 0.435481 | 4.3:-20776091 | None:intergenic |
AAATGGGATGGAGGGGAAAG+TGG | 0.438380 | 4.3:-20776062 | None:intergenic |
GGAAGAGATGGAATAGTAGT+AGG | 0.448399 | 4.3:-20775923 | None:intergenic |
GGAATATTGGTAGGAAAGCT+AGG | 0.453482 | 4.3:-20775968 | None:intergenic |
TTCAATTCCAAATATGCCTC+AGG | 0.454801 | 4.3:+20775883 | MS.gene068037:CDS |
GGTTAGATGTTGAAGGTGGT+GGG | 0.459567 | 4.3:-20776090 | None:intergenic |
GGAATAGTAGTAGGCAATGG+AGG | 0.463605 | 4.3:-20775914 | None:intergenic |
GGCAAAGGTGGCAGTGTTGT+TGG | 0.469747 | 4.3:-20775860 | None:intergenic |
AGTGAAGTGGCTGCTGGTAG+TGG | 0.486298 | 4.3:-20776016 | None:intergenic |
AGTGGTGGCATGGTGAGCTT+AGG | 0.486837 | 4.3:-20775944 | None:intergenic |
GGGATGGAGGGGAAAGTGGT+TGG | 0.490688 | 4.3:-20776058 | None:intergenic |
GGGAGAGAAATGGGATGGAG+GGG | 0.491154 | 4.3:-20776069 | None:intergenic |
GATGGAATAGTAGTAGGCAA+TGG | 0.491406 | 4.3:-20775917 | None:intergenic |
CAGAAGTAAAGTTGTGATGA+AGG | 0.498572 | 4.3:-20775744 | None:intergenic |
TTTGGCAAAGTGGGAATGGT+TGG | 0.502089 | 4.3:-20775836 | None:intergenic |
GGGGAGAGAAATGGGATGGA+GGG | 0.504818 | 4.3:-20776070 | None:intergenic |
TTGGTAGGAAAGCTAGGAAG+TGG | 0.544726 | 4.3:-20775962 | None:intergenic |
AAGTGGTTGGAATTGAAGGA+AGG | 0.558344 | 4.3:-20776045 | None:intergenic |
GGAAGTGTTGGAATATTGGT+AGG | 0.561176 | 4.3:-20775977 | None:intergenic |
ATGTTGAGAGATGGAAGTGT+TGG | 0.563754 | 4.3:-20775989 | None:intergenic |
TGGTGGGGAGAGAAATGGGA+TGG | 0.578876 | 4.3:-20776074 | None:intergenic |
TTTGGAATTGAAGGCAAAGG+TGG | 0.587593 | 4.3:-20775872 | None:intergenic |
AGTGGTGGAATGTTGAGAGA+TGG | 0.592158 | 4.3:-20775998 | None:intergenic |
GTTAGATGTTGAAGGTGGTG+GGG | 0.597019 | 4.3:-20776089 | None:intergenic |
TTTGGAAGTGAAGTGGCTGC+TGG | 0.597234 | 4.3:-20776022 | None:intergenic |
AAAGCTAGGAAGTGGTGGCA+TGG | 0.597500 | 4.3:-20775954 | None:intergenic |
ATGGTGAGCTTAGGAAGAGA+TGG | 0.610060 | 4.3:-20775935 | None:intergenic |
ATATTTGGAATTGAAGGCAA+AGG | 0.615183 | 4.3:-20775875 | None:intergenic |
GAAGTGGCTGCTGGTAGTGG+TGG | 0.615993 | 4.3:-20776013 | None:intergenic |
AGGAAGGTTTGGAAGTGAAG+TGG | 0.622568 | 4.3:-20776029 | None:intergenic |
TCAATTCCAAATATGCCTCA+GGG | 0.633758 | 4.3:+20775884 | MS.gene068037:CDS |
TAAGGGTTAGATGTTGAAGG+TGG | 0.638529 | 4.3:-20776094 | None:intergenic |
GTAGGAAAGCTAGGAAGTGG+TGG | 0.642479 | 4.3:-20775959 | None:intergenic |
AATGGAGGAAGATTTCCCTG+AGG | 0.807544 | 4.3:-20775899 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATATTTGGAATTGAAGGCAA+AGG | - | chr4.3:20775878-20775897 | None:intergenic | 30.0% |
CAGAAGTAAAGTTGTGATGA+AGG | - | chr4.3:20775747-20775766 | None:intergenic | 35.0% | |
CTTCATCACAACTTTACTTC+TGG | + | chr4.3:20775745-20775764 | MS.gene068037:CDS | 35.0% | |
TCAATTCCAAATATGCCTCA+GGG | + | chr4.3:20775884-20775903 | MS.gene068037:CDS | 35.0% | |
TTCAATTCCAAATATGCCTC+AGG | + | chr4.3:20775883-20775902 | MS.gene068037:CDS | 35.0% | |
! | TGAGGCATATTTGGAATTGA+AGG | - | chr4.3:20775884-20775903 | None:intergenic | 35.0% |
!! | AGATGGAAGTGTTGGAATAT+TGG | - | chr4.3:20775984-20776003 | None:intergenic | 35.0% |
!! | GTGTTGTTGTTTGCAATAGA+TGG | - | chr4.3:20775805-20775824 | None:intergenic | 35.0% |
AAGTGGTTGGAATTGAAGGA+AGG | - | chr4.3:20776048-20776067 | None:intergenic | 40.0% | |
AGATTTCCCTGAGGCATATT+TGG | - | chr4.3:20775893-20775912 | None:intergenic | 40.0% | |
GATGGAATAGTAGTAGGCAA+TGG | - | chr4.3:20775920-20775939 | None:intergenic | 40.0% | |
GGAAGAGATGGAATAGTAGT+AGG | - | chr4.3:20775926-20775945 | None:intergenic | 40.0% | |
GGAATATTGGTAGGAAAGCT+AGG | - | chr4.3:20775971-20775990 | None:intergenic | 40.0% | |
GTTGGAATTGAAGGAAGGTT+TGG | - | chr4.3:20776043-20776062 | None:intergenic | 40.0% | |
TAAGGGTTAGATGTTGAAGG+TGG | - | chr4.3:20776097-20776116 | None:intergenic | 40.0% | |
! | ATGTTGAGAGATGGAAGTGT+TGG | - | chr4.3:20775992-20776011 | None:intergenic | 40.0% |
! | TTTGGAATTGAAGGCAAAGG+TGG | - | chr4.3:20775875-20775894 | None:intergenic | 40.0% |
!! | GGAAGTGTTGGAATATTGGT+AGG | - | chr4.3:20775980-20775999 | None:intergenic | 40.0% |
!!! | GTTGTTGGTTTTGGCAAAGT+GGG | - | chr4.3:20775848-20775867 | None:intergenic | 40.0% |
!!! | TGTTGTTGGTTTTGGCAAAG+TGG | - | chr4.3:20775849-20775868 | None:intergenic | 40.0% |
AATGGAGGAAGATTTCCCTG+AGG | - | chr4.3:20775902-20775921 | None:intergenic | 45.0% | |
AGGAAGGTTTGGAAGTGAAG+TGG | - | chr4.3:20776032-20776051 | None:intergenic | 45.0% | |
ATGGTGAGCTTAGGAAGAGA+TGG | - | chr4.3:20775938-20775957 | None:intergenic | 45.0% | |
CAATAGATGGCGAGCTTCTA+AGG | - | chr4.3:20775792-20775811 | None:intergenic | 45.0% | |
GGAATAGTAGTAGGCAATGG+AGG | - | chr4.3:20775917-20775936 | None:intergenic | 45.0% | |
GGGAAAGTGGTTGGAATTGA+AGG | - | chr4.3:20776052-20776071 | None:intergenic | 45.0% | |
GGTTAGATGTTGAAGGTGGT+GGG | - | chr4.3:20776093-20776112 | None:intergenic | 45.0% | |
GTTAGATGTTGAAGGTGGTG+GGG | - | chr4.3:20776092-20776111 | None:intergenic | 45.0% | |
TTGGTAGGAAAGCTAGGAAG+TGG | - | chr4.3:20775965-20775984 | None:intergenic | 45.0% | |
TTTGGCAAAGTGGGAATGGT+TGG | - | chr4.3:20775839-20775858 | None:intergenic | 45.0% | |
! | AGTGGTGGAATGTTGAGAGA+TGG | - | chr4.3:20776001-20776020 | None:intergenic | 45.0% |
!! | GTGGGAATGGTTGGTAAGTT+TGG | - | chr4.3:20775830-20775849 | None:intergenic | 45.0% |
!!! | TGGTTTTGGCAAAGTGGGAA+TGG | - | chr4.3:20775843-20775862 | None:intergenic | 45.0% |
AAAGCTAGGAAGTGGTGGCA+TGG | - | chr4.3:20775957-20775976 | None:intergenic | 50.0% | |
AAATGGGATGGAGGGGAAAG+TGG | - | chr4.3:20776065-20776084 | None:intergenic | 50.0% | |
GGGTTAGATGTTGAAGGTGG+TGG | - | chr4.3:20776094-20776113 | None:intergenic | 50.0% | |
GTAGGAAAGCTAGGAAGTGG+TGG | - | chr4.3:20775962-20775981 | None:intergenic | 50.0% | |
TTTGGAAGTGAAGTGGCTGC+TGG | - | chr4.3:20776025-20776044 | None:intergenic | 50.0% | |
!! | AAGGTGGTGGGGAGAGAAAT+GGG | - | chr4.3:20776081-20776100 | None:intergenic | 50.0% |
!!! | GGTGGCAGTGTTGTTGGTTT+TGG | - | chr4.3:20775857-20775876 | None:intergenic | 50.0% |
AGTGAAGTGGCTGCTGGTAG+TGG | - | chr4.3:20776019-20776038 | None:intergenic | 55.0% | |
AGTGGTGGCATGGTGAGCTT+AGG | - | chr4.3:20775947-20775966 | None:intergenic | 55.0% | |
GGCAAAGGTGGCAGTGTTGT+TGG | - | chr4.3:20775863-20775882 | None:intergenic | 55.0% | |
GGGAGAGAAATGGGATGGAG+GGG | - | chr4.3:20776072-20776091 | None:intergenic | 55.0% | |
GGGGAGAGAAATGGGATGGA+GGG | - | chr4.3:20776073-20776092 | None:intergenic | 55.0% | |
TGGGGAGAGAAATGGGATGG+AGG | - | chr4.3:20776074-20776093 | None:intergenic | 55.0% | |
TGGTGGGGAGAGAAATGGGA+TGG | - | chr4.3:20776077-20776096 | None:intergenic | 55.0% | |
!! | GAAGGTGGTGGGGAGAGAAA+TGG | - | chr4.3:20776082-20776101 | None:intergenic | 55.0% |
GGGATGGAGGGGAAAGTGGT+TGG | - | chr4.3:20776061-20776080 | None:intergenic | 60.0% | |
!! | GAAGTGGCTGCTGGTAGTGG+TGG | - | chr4.3:20776016-20776035 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 20775728 | 20776117 | 20775728 | ID=MS.gene068037 |
chr4.3 | mRNA | 20775728 | 20776117 | 20775728 | ID=MS.gene068037.t1;Parent=MS.gene068037 |
chr4.3 | exon | 20775728 | 20776117 | 20775728 | ID=MS.gene068037.t1.exon1;Parent=MS.gene068037.t1 |
chr4.3 | CDS | 20775728 | 20776117 | 20775728 | ID=cds.MS.gene068037.t1;Parent=MS.gene068037.t1 |
Gene Sequence |
Protein sequence |