Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068304.t1 | XP_003604521.1 | 97.3 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 4.70E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068304.t1 | O80915 | 59.5 | 222 | 86 | 2 | 5 | 226 | 3 | 220 | 3.1e-63 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068304.t1 | G7JKL2 | 97.3 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 3.4e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene068304 | -0.80857 | 2.90E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene068304 | -0.83042 | 2.97E-55 | -1.69E-46 |
| MS.gene053054 | MS.gene068304 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene068304 | -0.831548 | 1.57E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene068304 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene068304 | -0.837417 | 5.26E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene068304 | -0.858162 | 9.96E-63 | -1.69E-46 |
| MS.gene058935 | MS.gene068304 | -0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene059849 | MS.gene068304 | 0.800552 | 1.37E-48 | -1.69E-46 |
| MS.gene059896 | MS.gene068304 | 0.822352 | 2.48E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene068304 | 0.837488 | 5.05E-57 | -1.69E-46 |
| MS.gene060553 | MS.gene068304 | -0.80021 | 1.60E-48 | -1.69E-46 |
| MS.gene061114 | MS.gene068304 | 0.854055 | 1.59E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068304.t1 | MTR_4g014060 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 2.86e-157 | 434 |
| MS.gene068304.t1 | MTR_0562s0010 | 97.345 | 226 | 6 | 0 | 1 | 226 | 1 | 226 | 2.86e-157 | 434 |
| MS.gene068304.t1 | MTR_5g083490 | 60.000 | 205 | 77 | 2 | 6 | 210 | 2 | 201 | 6.40e-79 | 236 |
| MS.gene068304.t1 | MTR_7g096220 | 38.037 | 163 | 99 | 1 | 57 | 219 | 36 | 196 | 1.55e-32 | 117 |
| MS.gene068304.t1 | MTR_3g031070 | 45.087 | 173 | 90 | 1 | 27 | 199 | 1 | 168 | 7.50e-29 | 107 |
| MS.gene068304.t1 | MTR_2g100260 | 37.037 | 162 | 92 | 4 | 44 | 199 | 21 | 178 | 1.58e-28 | 106 |
| MS.gene068304.t1 | MTR_1g070480 | 38.272 | 162 | 84 | 2 | 59 | 206 | 31 | 190 | 4.19e-27 | 103 |
| MS.gene068304.t1 | MTR_6g092690 | 30.526 | 190 | 127 | 3 | 26 | 213 | 2 | 188 | 2.84e-25 | 98.6 |
| MS.gene068304.t1 | MTR_2g100270 | 41.667 | 156 | 89 | 1 | 44 | 199 | 20 | 173 | 1.30e-23 | 93.6 |
| MS.gene068304.t1 | MTR_8g016150 | 38.255 | 149 | 90 | 1 | 45 | 193 | 20 | 166 | 1.07e-19 | 83.2 |
| MS.gene068304.t1 | MTR_1g080760 | 41.727 | 139 | 79 | 1 | 60 | 198 | 35 | 171 | 1.42e-18 | 80.5 |
| MS.gene068304.t1 | MTR_1g093090 | 33.758 | 157 | 103 | 1 | 45 | 200 | 8 | 164 | 2.91e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068304.t1 | AT2G38360 | 62.621 | 206 | 73 | 2 | 5 | 210 | 3 | 204 | 3.67e-90 | 265 |
| MS.gene068304.t1 | AT5G01640 | 57.075 | 212 | 83 | 4 | 4 | 213 | 2 | 207 | 2.89e-80 | 239 |
| MS.gene068304.t1 | AT3G56110 | 56.585 | 205 | 77 | 2 | 6 | 210 | 2 | 194 | 3.32e-72 | 219 |
| MS.gene068304.t1 | AT3G56110 | 56.585 | 205 | 77 | 2 | 6 | 210 | 2 | 194 | 3.32e-72 | 219 |
| MS.gene068304.t1 | AT3G56110 | 56.585 | 205 | 77 | 2 | 6 | 210 | 2 | 194 | 3.32e-72 | 219 |
| MS.gene068304.t1 | AT3G56110 | 56.585 | 205 | 77 | 2 | 6 | 210 | 2 | 194 | 3.32e-72 | 219 |
| MS.gene068304.t1 | AT5G05380 | 55.024 | 209 | 84 | 2 | 2 | 210 | 42 | 240 | 1.62e-67 | 209 |
| MS.gene068304.t1 | AT5G05380 | 55.556 | 207 | 82 | 2 | 4 | 210 | 1 | 197 | 1.92e-67 | 207 |
| MS.gene068304.t1 | AT5G05380 | 55.024 | 209 | 84 | 2 | 2 | 210 | 50 | 248 | 1.99e-67 | 209 |
| MS.gene068304.t1 | AT5G05380 | 55.024 | 209 | 84 | 2 | 2 | 210 | 66 | 264 | 4.27e-67 | 208 |
| MS.gene068304.t1 | AT2G40380 | 56.522 | 207 | 79 | 2 | 4 | 210 | 1 | 196 | 5.65e-66 | 203 |
| MS.gene068304.t1 | AT5G07110 | 63.758 | 149 | 54 | 0 | 51 | 199 | 36 | 184 | 3.37e-56 | 178 |
| MS.gene068304.t1 | AT4G00005 | 60.396 | 101 | 36 | 2 | 83 | 181 | 3 | 101 | 2.93e-33 | 116 |
| MS.gene068304.t1 | AT1G55190 | 39.429 | 175 | 101 | 3 | 38 | 209 | 14 | 186 | 8.86e-33 | 117 |
| MS.gene068304.t1 | AT3G13710 | 36.628 | 172 | 106 | 2 | 38 | 208 | 14 | 183 | 2.32e-28 | 106 |
| MS.gene068304.t1 | AT1G04260 | 33.758 | 157 | 102 | 1 | 44 | 200 | 5 | 159 | 9.94e-26 | 99.4 |
| MS.gene068304.t1 | AT1G08770 | 38.129 | 139 | 86 | 0 | 60 | 198 | 48 | 186 | 2.05e-24 | 96.7 |
| MS.gene068304.t1 | AT5G56230 | 33.113 | 151 | 98 | 2 | 50 | 199 | 26 | 174 | 1.94e-23 | 93.2 |
| MS.gene068304.t1 | AT1G17700 | 35.976 | 164 | 103 | 1 | 38 | 201 | 15 | 176 | 3.27e-23 | 92.4 |
| MS.gene068304.t1 | AT3G13720 | 37.654 | 162 | 98 | 2 | 49 | 209 | 26 | 185 | 1.01e-22 | 91.7 |
| MS.gene068304.t1 | AT4G29658 | 35.625 | 160 | 100 | 2 | 44 | 202 | 19 | 176 | 7.01e-21 | 86.7 |
| MS.gene068304.t1 | AT1G55640 | 31.361 | 169 | 97 | 6 | 50 | 209 | 28 | 186 | 7.17e-18 | 78.6 |
Find 93 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGATCCGGCGGTGGTTGA+TGG | 0.281626 | 4.4:+86575892 | None:intergenic |
| TCATCGGCCTCCTCGCTTCA+TGG | 0.287239 | 4.4:-86575597 | MS.gene068304:CDS |
| GTGGCGTCGGAGAAGGATTC+AGG | 0.290221 | 4.4:+86575727 | None:intergenic |
| GATCATAAGCGTTTCGAAAT+CGG | 0.372244 | 4.4:+86575513 | None:intergenic |
| GAGAGAGACAGCGAGAATTC+CGG | 0.373601 | 4.4:+86575648 | None:intergenic |
| CTTGTTTCCGCTTTGATGCT+CGG | 0.381195 | 4.4:-86575439 | MS.gene068304:CDS |
| CCGGCGGTGGTTGATGGTGG+AGG | 0.395718 | 4.4:+86575898 | None:intergenic |
| CGGTAGGACGGAAGAGGTAG+AGG | 0.407361 | 4.4:+86575569 | None:intergenic |
| GGTGGAGGGACGGAGGTGAC+AGG | 0.408719 | 4.4:+86575913 | None:intergenic |
| GGATCTCTTCCTTGATGAAC+AGG | 0.419462 | 4.4:-86575374 | MS.gene068304:CDS |
| GTTGCTGTTGTTTGTCTCCA+TGG | 0.420591 | 4.4:-86575415 | MS.gene068304:CDS |
| ACGGAGGTGACAGGGAGAAC+GGG | 0.428185 | 4.4:+86575922 | None:intergenic |
| ACAGCTGCGGCACCGGTAGT+AGG | 0.444424 | 4.4:+86575310 | None:intergenic |
| TGGCACCGGATCCGACGTTC+CGG | 0.457802 | 4.4:-86575863 | MS.gene068304:CDS |
| GCCGCAGCTGTTCCTTCCTC+CGG | 0.465868 | 4.4:-86575298 | MS.gene068304:CDS |
| ACCGCCGGATCCACCGTCTC+TGG | 0.470096 | 4.4:-86575883 | MS.gene068304:CDS |
| TTGATGAGGACACGGACGGC+GGG | 0.471976 | 4.4:+86575832 | None:intergenic |
| CAGGATAATTCTCAGGCTAC+TGG | 0.474636 | 4.4:-86575355 | MS.gene068304:CDS |
| TTCCTCCGTGCTCCTACTAC+CGG | 0.480106 | 4.4:-86575322 | MS.gene068304:CDS |
| GATCGTCCTCTCGTTCTCTT+CGG | 0.480472 | 4.4:-86575547 | MS.gene068304:CDS |
| ACGGAGGGTGGCGTCGGAGA+AGG | 0.486075 | 4.4:+86575720 | None:intergenic |
| ATTTACCGGAACGTCGGATC+CGG | 0.490828 | 4.4:+86575858 | None:intergenic |
| GACGGAGGTGACAGGGAGAA+CGG | 0.491325 | 4.4:+86575921 | None:intergenic |
| GACGATCGGTAGGACGGAAG+AGG | 0.491385 | 4.4:+86575563 | None:intergenic |
| GCCTCGCACAACGCCGTCCA+TGG | 0.494685 | 4.4:-86575783 | MS.gene068304:CDS |
| TGATGAACAGGATAATTCTC+AGG | 0.497238 | 4.4:-86575362 | MS.gene068304:CDS |
| AACTACTACGCCGTCGTCGC+CGG | 0.500902 | 4.4:-86575667 | MS.gene068304:CDS |
| GGTGCCAGAGACGGTGGATC+CGG | 0.504978 | 4.4:+86575879 | None:intergenic |
| GATCCGGCGGTGGTTGATGG+TGG | 0.505226 | 4.4:+86575895 | None:intergenic |
| GGAAGGAACAGCTGCGGCAC+CGG | 0.508345 | 4.4:+86575303 | None:intergenic |
| AGGGAGAACGGGTGGAGCGG+AGG | 0.520564 | 4.4:+86575933 | None:intergenic |
| GAAACGCTTATGATCCTCTC+AGG | 0.525471 | 4.4:-86575505 | MS.gene068304:CDS |
| GAGAATTATCCTGTTCATCA+AGG | 0.528333 | 4.4:+86575365 | None:intergenic |
| TCCATGGACGGCGTTGTGCG+AGG | 0.531166 | 4.4:+86575782 | None:intergenic |
| GATGAGGACACGGACGGCGG+GGG | 0.531662 | 4.4:+86575834 | None:intergenic |
| GGATCCACCGTCTCTGGCAC+CGG | 0.532730 | 4.4:-86575877 | MS.gene068304:CDS |
| CCATGGAGCATTCCGTGCAC+CGG | 0.534816 | 4.4:-86575398 | MS.gene068304:CDS |
| CGAGAGGACGATCGGTAGGA+CGG | 0.535810 | 4.4:+86575557 | None:intergenic |
| TTCTCTCTCATCCTCCTCAT+CGG | 0.539240 | 4.4:-86575613 | MS.gene068304:CDS |
| AGAGACGGTGGATCCGGCGG+TGG | 0.540520 | 4.4:+86575885 | None:intergenic |
| GACAGGGAGAACGGGTGGAG+CGG | 0.542549 | 4.4:+86575930 | None:intergenic |
| AGCGAGAATTCCGGCGACGA+CGG | 0.543379 | 4.4:+86575657 | None:intergenic |
| GGCGTTGTGCGAGGCCGTTG+CGG | 0.553514 | 4.4:+86575791 | None:intergenic |
| CCGGTGCACGGAATGCTCCA+TGG | 0.555859 | 4.4:+86575398 | None:intergenic |
| GGTGGTTGATGGTGGAGGGA+CGG | 0.558405 | 4.4:+86575903 | None:intergenic |
| TCATCAAGGAAGAGATCCTC+CGG | 0.566507 | 4.4:+86575379 | None:intergenic |
| GGTAGTAGGAGCACGGAGGA+AGG | 0.568269 | 4.4:+86575324 | None:intergenic |
| GTGGAGGGACGGAGGTGACA+GGG | 0.569763 | 4.4:+86575914 | None:intergenic |
| GCGGACACGGAGGGTGGCGT+CGG | 0.570953 | 4.4:+86575714 | None:intergenic |
| ATTCAGAGAGGTTGTTGATG+AGG | 0.571632 | 4.4:+86575818 | None:intergenic |
| TAGGAGCACGGAGGAAGGAG+AGG | 0.572418 | 4.4:+86575329 | None:intergenic |
| AAGCGAGGAGGCCGATGAGG+AGG | 0.572536 | 4.4:+86575602 | None:intergenic |
| GTCGGATCCGGTGCCAGAGA+CGG | 0.575345 | 4.4:+86575870 | None:intergenic |
| GGAAGAGATCCTCCGGTGCA+CGG | 0.575672 | 4.4:+86575386 | None:intergenic |
| AATCAAACGCGTCCGGAGGA+AGG | 0.576535 | 4.4:+86575286 | None:intergenic |
| GAGGTGACAGGGAGAACGGG+TGG | 0.577188 | 4.4:+86575925 | None:intergenic |
| TGAGAGAGAACGGATTTGTG+AGG | 0.578524 | 4.4:+86575626 | None:intergenic |
| ACCAAATCAAACGCGTCCGG+AGG | 0.578759 | 4.4:+86575282 | None:intergenic |
| GAAGAGAACGAGAGGACGAT+CGG | 0.579653 | 4.4:+86575549 | None:intergenic |
| TGATGAGGACACGGACGGCG+GGG | 0.583090 | 4.4:+86575833 | None:intergenic |
| CGGCGGTGGTTGATGGTGGA+GGG | 0.583397 | 4.4:+86575899 | None:intergenic |
| ATTACCAAATCAAACGCGTC+CGG | 0.587692 | 4.4:+86575279 | None:intergenic |
| GAACAGATCCAACGCTGGTG+AGG | 0.590012 | 4.4:+86575461 | None:intergenic |
| GGATTCAGGTTTGCTGAAAG+CGG | 0.593988 | 4.4:+86575741 | None:intergenic |
| GGTTGATGGTGGAGGGACGG+AGG | 0.595266 | 4.4:+86575906 | None:intergenic |
| TATGATCCTCTCAGGACTCA+CGG | 0.596304 | 4.4:-86575497 | MS.gene068304:CDS |
| CGACGAGTTCTGTCCATGGA+CGG | 0.599248 | 4.4:+86575770 | None:intergenic |
| ATGAGGAGGATGAGAGAGAA+CGG | 0.602652 | 4.4:+86575616 | None:intergenic |
| GCCAGAGACGGTGGATCCGG+CGG | 0.610168 | 4.4:+86575882 | None:intergenic |
| CGGTCGACGAGTTCTGTCCA+TGG | 0.610772 | 4.4:+86575766 | None:intergenic |
| AGAACGAGAGGACGATCGGT+AGG | 0.613116 | 4.4:+86575553 | None:intergenic |
| GTTGATGAGGACACGGACGG+CGG | 0.616161 | 4.4:+86575831 | None:intergenic |
| ATGAAGCGAGGAGGCCGATG+AGG | 0.616773 | 4.4:+86575599 | None:intergenic |
| GGGTGGAGCGGAGGACATTG+TGG | 0.618821 | 4.4:+86575942 | None:intergenic |
| AGGACGGAAGAGGTAGAGGA+AGG | 0.623311 | 4.4:+86575573 | None:intergenic |
| GGATCCGGTGCCAGAGACGG+TGG | 0.625462 | 4.4:+86575873 | None:intergenic |
| TGGAGCATTCCGTGCACCGG+AGG | 0.631225 | 4.4:-86575395 | MS.gene068304:CDS |
| CAGGTTTGCTGAAAGCGGAA+CGG | 0.637545 | 4.4:+86575746 | None:intergenic |
| CCTCCACCATCAACCACCGC+CGG | 0.642890 | 4.4:-86575898 | MS.gene068304:CDS |
| CGAAGACCGTGAGTCCTGAG+AGG | 0.643994 | 4.4:+86575491 | None:intergenic |
| GTGCGACCGAAGAGAACGAG+AGG | 0.646103 | 4.4:+86575541 | None:intergenic |
| CGGCACCGGTAGTAGGAGCA+CGG | 0.647016 | 4.4:+86575317 | None:intergenic |
| CGACGGCGTAGTAGTTGACA+CGG | 0.654494 | 4.4:+86575674 | None:intergenic |
| AGAGGTTGTTGATGAGGACA+CGG | 0.660241 | 4.4:+86575824 | None:intergenic |
| AGCAACACCGAGCATCAAAG+CGG | 0.662231 | 4.4:+86575432 | None:intergenic |
| AGAGGAAGGTCCATGAAGCG+AGG | 0.662666 | 4.4:+86575587 | None:intergenic |
| TCCGGAGGAAGGAACAGCTG+CGG | 0.666900 | 4.4:+86575297 | None:intergenic |
| GGAAGGTCCATGAAGCGAGG+AGG | 0.668403 | 4.4:+86575590 | None:intergenic |
| CTCTCTGAATCACTCCGCAA+CGG | 0.671492 | 4.4:-86575805 | MS.gene068304:CDS |
| GTTGTTGATGAGGACACGGA+CGG | 0.682626 | 4.4:+86575828 | None:intergenic |
| AACAAGAACAGATCCAACGC+TGG | 0.684838 | 4.4:+86575456 | None:intergenic |
| CGTTGCGGAGTGATTCAGAG+AGG | 0.702579 | 4.4:+86575806 | None:intergenic |
| CACCGGTAGTAGGAGCACGG+AGG | 0.761681 | 4.4:+86575320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GAGAATTATCCTGTTCATCA+AGG | + | chr4.4:86575872-86575891 | None:intergenic | 35.0% | |
| GATCATAAGCGTTTCGAAAT+CGG | + | chr4.4:86575724-86575743 | None:intergenic | 35.0% | |
| TGATGAACAGGATAATTCTC+AGG | - | chr4.4:86575872-86575891 | MS.gene068304:CDS | 35.0% | |
| !! | GGAAGTATGAGTAGTTTTTG+CGG | + | chr4.4:86575542-86575561 | None:intergenic | 35.0% |
| ATTCAGAGAGGTTGTTGATG+AGG | + | chr4.4:86575419-86575438 | None:intergenic | 40.0% | |
| ! | ATGAGTAGTTTTTGCGGACA+CGG | + | chr4.4:86575536-86575555 | None:intergenic | 40.0% |
| AACAAGAACAGATCCAACGC+TGG | + | chr4.4:86575781-86575800 | None:intergenic | 45.0% | |
| ATGAGGAGGATGAGAGAGAA+CGG | + | chr4.4:86575621-86575640 | None:intergenic | 45.0% | |
| CAGGATAATTCTCAGGCTAC+TGG | - | chr4.4:86575879-86575898 | MS.gene068304:CDS | 45.0% | |
| CTTGTTTCCGCTTTGATGCT+CGG | - | chr4.4:86575795-86575814 | MS.gene068304:CDS | 45.0% | |
| GAAACGCTTATGATCCTCTC+AGG | - | chr4.4:86575729-86575748 | MS.gene068304:CDS | 45.0% | |
| GGATCTCTTCCTTGATGAAC+AGG | - | chr4.4:86575860-86575879 | MS.gene068304:CDS | 45.0% | |
| TATGATCCTCTCAGGACTCA+CGG | - | chr4.4:86575737-86575756 | MS.gene068304:CDS | 45.0% | |
| TCATCAAGGAAGAGATCCTC+CGG | + | chr4.4:86575858-86575877 | None:intergenic | 45.0% | |
| TTCTCTCTCATCCTCCTCAT+CGG | - | chr4.4:86575621-86575640 | MS.gene068304:CDS | 45.0% | |
| ! | AGAGGTTGTTGATGAGGACA+CGG | + | chr4.4:86575413-86575432 | None:intergenic | 45.0% |
| ! | GTTGCTGTTGTTTGTCTCCA+TGG | - | chr4.4:86575819-86575838 | MS.gene068304:CDS | 45.0% |
| ! | TGAGAGAGAACGGATTTGTG+AGG | + | chr4.4:86575611-86575630 | None:intergenic | 45.0% |
| !! | GGATTCAGGTTTGCTGAAAG+CGG | + | chr4.4:86575496-86575515 | None:intergenic | 45.0% |
| AGCAACACCGAGCATCAAAG+CGG | + | chr4.4:86575805-86575824 | None:intergenic | 50.0% | |
| ATTTACCGGAACGTCGGATC+CGG | + | chr4.4:86575379-86575398 | None:intergenic | 50.0% | |
| CTCTCTGAATCACTCCGCAA+CGG | - | chr4.4:86575429-86575448 | MS.gene068304:CDS | 50.0% | |
| GAAGAGAACGAGAGGACGAT+CGG | + | chr4.4:86575688-86575707 | None:intergenic | 50.0% | |
| GAGAGAGACAGCGAGAATTC+CGG | + | chr4.4:86575589-86575608 | None:intergenic | 50.0% | |
| GATCGTCCTCTCGTTCTCTT+CGG | - | chr4.4:86575687-86575706 | MS.gene068304:CDS | 50.0% | |
| ! | AGTAGTTTTTGCGGACACGG+AGG | + | chr4.4:86575533-86575552 | None:intergenic | 50.0% |
| ! | GTAGTTTTTGCGGACACGGA+GGG | + | chr4.4:86575532-86575551 | None:intergenic | 50.0% |
| ! | GTTGTTGATGAGGACACGGA+CGG | + | chr4.4:86575409-86575428 | None:intergenic | 50.0% |
| !! | CAGGTTTGCTGAAAGCGGAA+CGG | + | chr4.4:86575491-86575510 | None:intergenic | 50.0% |
| AGAACGAGAGGACGATCGGT+AGG | + | chr4.4:86575684-86575703 | None:intergenic | 55.0% | |
| AGAGGAAGGTCCATGAAGCG+AGG | + | chr4.4:86575650-86575669 | None:intergenic | 55.0% | |
| AGGACGGAAGAGGTAGAGGA+AGG | + | chr4.4:86575664-86575683 | None:intergenic | 55.0% | |
| CGACGAGTTCTGTCCATGGA+CGG | + | chr4.4:86575467-86575486 | None:intergenic | 55.0% | |
| CGACGGCGTAGTAGTTGACA+CGG | + | chr4.4:86575563-86575582 | None:intergenic | 55.0% | |
| CGTTGCGGAGTGATTCAGAG+AGG | + | chr4.4:86575431-86575450 | None:intergenic | 55.0% | |
| GAACAGATCCAACGCTGGTG+AGG | + | chr4.4:86575776-86575795 | None:intergenic | 55.0% | |
| GGGGGAATTTACCGGAACGT+CGG | + | chr4.4:86575385-86575404 | None:intergenic | 55.0% | |
| TTCCTCCGTGCTCCTACTAC+CGG | - | chr4.4:86575912-86575931 | MS.gene068304:CDS | 55.0% | |
| !! | GTCGTTTTCCTCACCAGCGT+TGG | - | chr4.4:86575765-86575784 | MS.gene068304:CDS | 55.0% |
| AACTACTACGCCGTCGTCGC+CGG | - | chr4.4:86575567-86575586 | MS.gene068304:CDS | 60.0% | |
| ACGGAGGTGACAGGGAGAAC+GGG | + | chr4.4:86575315-86575334 | None:intergenic | 60.0% | |
| AGCGAGAATTCCGGCGACGA+CGG | + | chr4.4:86575580-86575599 | None:intergenic | 60.0% | |
| ATGAAGCGAGGAGGCCGATG+AGG | + | chr4.4:86575638-86575657 | None:intergenic | 60.0% | |
| CGAAGACCGTGAGTCCTGAG+AGG | + | chr4.4:86575746-86575765 | None:intergenic | 60.0% | |
| CGAGAGGACGATCGGTAGGA+CGG | + | chr4.4:86575680-86575699 | None:intergenic | 60.0% | |
| CGGTAGGACGGAAGAGGTAG+AGG | + | chr4.4:86575668-86575687 | None:intergenic | 60.0% | |
| CGGTCGACGAGTTCTGTCCA+TGG | + | chr4.4:86575471-86575490 | None:intergenic | 60.0% | |
| GACGATCGGTAGGACGGAAG+AGG | + | chr4.4:86575674-86575693 | None:intergenic | 60.0% | |
| GACGGAGGTGACAGGGAGAA+CGG | + | chr4.4:86575316-86575335 | None:intergenic | 60.0% | |
| GGAAGAGATCCTCCGGTGCA+CGG | + | chr4.4:86575851-86575870 | None:intergenic | 60.0% | |
| GGAAGGTCCATGAAGCGAGG+AGG | + | chr4.4:86575647-86575666 | None:intergenic | 60.0% | |
| GTGCGACCGAAGAGAACGAG+AGG | + | chr4.4:86575696-86575715 | None:intergenic | 60.0% | |
| TCATCGGCCTCCTCGCTTCA+TGG | - | chr4.4:86575637-86575656 | MS.gene068304:CDS | 60.0% | |
| TCCGGAGGAAGGAACAGCTG+CGG | + | chr4.4:86575940-86575959 | None:intergenic | 60.0% | |
| TTGATGAGGACACGGACGGC+GGG | + | chr4.4:86575405-86575424 | None:intergenic | 60.0% | |
| ! | CCATGGAGCATTCCGTGCAC+CGG | - | chr4.4:86575836-86575855 | MS.gene068304:CDS | 60.0% |
| ! | GGTAGTAGGAGCACGGAGGA+AGG | + | chr4.4:86575913-86575932 | None:intergenic | 60.0% |
| ! | GTGGCGTCGGAGAAGGATTC+AGG | + | chr4.4:86575510-86575529 | None:intergenic | 60.0% |
| ! | GTTGATGAGGACACGGACGG+CGG | + | chr4.4:86575406-86575425 | None:intergenic | 60.0% |
| ! | GTTTTTGCGGACACGGAGGG+TGG | + | chr4.4:86575529-86575548 | None:intergenic | 60.0% |
| ! | TAGGAGCACGGAGGAAGGAG+AGG | + | chr4.4:86575908-86575927 | None:intergenic | 60.0% |
| !! | GGTGGTTGATGGTGGAGGGA+CGG | + | chr4.4:86575334-86575353 | None:intergenic | 60.0% |
| AAGCGAGGAGGCCGATGAGG+AGG | + | chr4.4:86575635-86575654 | None:intergenic | 65.0% | |
| CCGGTGCACGGAATGCTCCA+TGG | + | chr4.4:86575839-86575858 | None:intergenic | 65.0% | |
| CCTCCACCATCAACCACCGC+CGG | - | chr4.4:86575336-86575355 | MS.gene068304:CDS | 65.0% | |
| CGGACGGCGGGGGAATTTAC+CGG | + | chr4.4:86575393-86575412 | None:intergenic | 65.0% | |
| GACAGGGAGAACGGGTGGAG+CGG | + | chr4.4:86575307-86575326 | None:intergenic | 65.0% | |
| GAGGTGACAGGGAGAACGGG+TGG | + | chr4.4:86575312-86575331 | None:intergenic | 65.0% | |
| GCCGCAGCTGTTCCTTCCTC+CGG | - | chr4.4:86575936-86575955 | MS.gene068304:CDS | 65.0% | |
| GGAAGGAACAGCTGCGGCAC+CGG | + | chr4.4:86575934-86575953 | None:intergenic | 65.0% | |
| GGATCCACCGTCTCTGGCAC+CGG | - | chr4.4:86575357-86575376 | MS.gene068304:CDS | 65.0% | |
| GGGTGGAGCGGAGGACATTG+TGG | + | chr4.4:86575295-86575314 | None:intergenic | 65.0% | |
| GGTGCCAGAGACGGTGGATC+CGG | + | chr4.4:86575358-86575377 | None:intergenic | 65.0% | |
| GTGGAGGGACGGAGGTGACA+GGG | + | chr4.4:86575323-86575342 | None:intergenic | 65.0% | |
| GTGGATCCGGCGGTGGTTGA+TGG | + | chr4.4:86575345-86575364 | None:intergenic | 65.0% | |
| TCCATGGACGGCGTTGTGCG+AGG | + | chr4.4:86575455-86575474 | None:intergenic | 65.0% | |
| TGATGAGGACACGGACGGCG+GGG | + | chr4.4:86575404-86575423 | None:intergenic | 65.0% | |
| ! | CACCGGTAGTAGGAGCACGG+AGG | + | chr4.4:86575917-86575936 | None:intergenic | 65.0% |
| ! | GTCGGATCCGGTGCCAGAGA+CGG | + | chr4.4:86575367-86575386 | None:intergenic | 65.0% |
| ! | TGGAGCATTCCGTGCACCGG+AGG | - | chr4.4:86575839-86575858 | MS.gene068304:CDS | 65.0% |
| ! | TGGCACCGGATCCGACGTTC+CGG | - | chr4.4:86575371-86575390 | MS.gene068304:CDS | 65.0% |
| !! | ACAGCTGCGGCACCGGTAGT+AGG | + | chr4.4:86575927-86575946 | None:intergenic | 65.0% |
| !! | CGGCACCGGTAGTAGGAGCA+CGG | + | chr4.4:86575920-86575939 | None:intergenic | 65.0% |
| !! | CGGCGGTGGTTGATGGTGGA+GGG | + | chr4.4:86575338-86575357 | None:intergenic | 65.0% |
| !! | GATCCGGCGGTGGTTGATGG+TGG | + | chr4.4:86575342-86575361 | None:intergenic | 65.0% |
| !! | GGTTGATGGTGGAGGGACGG+AGG | + | chr4.4:86575331-86575350 | None:intergenic | 65.0% |
| ACCGCCGGATCCACCGTCTC+TGG | - | chr4.4:86575351-86575370 | MS.gene068304:CDS | 70.0% | |
| AGAGACGGTGGATCCGGCGG+TGG | + | chr4.4:86575352-86575371 | None:intergenic | 70.0% | |
| AGGGAGAACGGGTGGAGCGG+AGG | + | chr4.4:86575304-86575323 | None:intergenic | 70.0% | |
| GATGAGGACACGGACGGCGG+GGG | + | chr4.4:86575403-86575422 | None:intergenic | 70.0% | |
| GCCAGAGACGGTGGATCCGG+CGG | + | chr4.4:86575355-86575374 | None:intergenic | 70.0% | |
| GCCTCGCACAACGCCGTCCA+TGG | - | chr4.4:86575451-86575470 | MS.gene068304:CDS | 70.0% | |
| GGCGTTGTGCGAGGCCGTTG+CGG | + | chr4.4:86575446-86575465 | None:intergenic | 70.0% | |
| GGTGGAGGGACGGAGGTGAC+AGG | + | chr4.4:86575324-86575343 | None:intergenic | 70.0% | |
| ! | ACGGAGGGTGGCGTCGGAGA+AGG | + | chr4.4:86575517-86575536 | None:intergenic | 70.0% |
| ! | GGATCCGGTGCCAGAGACGG+TGG | + | chr4.4:86575364-86575383 | None:intergenic | 70.0% |
| !! | CCGGCGGTGGTTGATGGTGG+AGG | + | chr4.4:86575339-86575358 | None:intergenic | 70.0% |
| GCGGACACGGAGGGTGGCGT+CGG | + | chr4.4:86575523-86575542 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 86575288 | 86575968 | 86575288 | ID=MS.gene068304 |
| chr4.4 | mRNA | 86575288 | 86575968 | 86575288 | ID=MS.gene068304.t1;Parent=MS.gene068304 |
| chr4.4 | exon | 86575288 | 86575968 | 86575288 | ID=MS.gene068304.t1.exon1;Parent=MS.gene068304.t1 |
| chr4.4 | CDS | 86575288 | 86575968 | 86575288 | ID=cds.MS.gene068304.t1;Parent=MS.gene068304.t1 |
| Gene Sequence |
| Protein sequence |
