AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068442

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068442.t1 MTR_6g039440 69.035 549 170 0 1 549 4 552 0.0 810
MS.gene068442.t1 MTR_5g062230 70.370 540 160 0 10 549 13 552 0.0 800
MS.gene068442.t1 MTR_6g008560 68.124 549 174 1 2 549 8 556 0.0 799
MS.gene068442.t1 MTR_4g048460 69.118 544 168 0 6 549 17 560 0.0 788
MS.gene068442.t1 MTR_3g464190 66.667 549 182 1 1 548 7 555 0.0 773
MS.gene068442.t1 MTR_5g073200 65.993 544 184 1 6 548 4 547 0.0 743
MS.gene068442.t1 MTR_5g073260 64.428 551 194 2 1 549 1 551 0.0 741
MS.gene068442.t1 MTR_5g094620 63.787 544 178 2 6 549 12 536 0.0 732
MS.gene068442.t1 MTR_4g081460 58.029 548 227 2 4 549 15 561 0.0 665
MS.gene068442.t1 MTR_4g048460 68.527 448 141 0 6 453 17 464 0.0 635
MS.gene068442.t1 MTR_6g008560 68.250 400 127 0 150 549 1 400 0.0 593
MS.gene068442.t1 MTR_2g082010 44.872 546 295 6 7 548 23 566 2.23e-174 505
MS.gene068442.t1 MTR_2g081980 44.872 546 293 7 9 548 12 555 7.51e-172 498
MS.gene068442.t1 MTR_8g007515 45.620 548 290 6 7 548 9 554 4.43e-169 491
MS.gene068442.t1 MTR_2g082060 43.773 546 288 8 9 548 19 551 8.22e-161 469
MS.gene068442.t1 MTR_4g019550 41.561 551 298 8 9 548 19 556 1.56e-143 426
MS.gene068442.t1 MTR_2g082050 40.039 507 245 8 47 550 9 459 1.92e-125 376
MS.gene068442.t1 MTR_4g045810 34.615 546 346 4 7 548 41 579 1.78e-113 349
MS.gene068442.t1 MTR_2g089120 35.922 515 307 9 43 550 67 565 5.56e-107 332
MS.gene068442.t1 MTR_2g064425 36.280 543 332 9 11 549 53 585 4.18e-106 330
MS.gene068442.t1 MTR_2g089130 34.638 511 316 6 43 549 67 563 1.55e-105 328
MS.gene068442.t1 MTR_8g057020 33.333 549 357 5 3 549 47 588 5.15e-99 312
MS.gene068442.t1 MTR_2g064425 34.622 543 326 10 11 549 53 570 6.68e-96 303
MS.gene068442.t1 MTR_2g065450 32.486 551 359 6 2 549 49 589 1.43e-94 300
MS.gene068442.t1 MTR_7g010710 31.159 552 369 7 1 547 7 552 9.68e-87 279
MS.gene068442.t1 MTR_2g064425 42.975 363 195 7 11 370 53 406 6.79e-86 273
MS.gene068442.t1 MTR_4g092020 32.039 515 337 6 38 548 64 569 7.42e-85 274
MS.gene068442.t1 MTR_4g092010 30.769 546 366 9 2 542 18 556 9.90e-84 271
MS.gene068442.t1 MTR_7g057340 67.251 171 56 0 379 549 1 171 2.24e-83 257
MS.gene068442.t1 MTR_7g057390 66.082 171 55 1 379 549 1 168 3.27e-78 243
MS.gene068442.t1 MTR_5g094530 58.904 219 52 4 160 375 1 184 3.66e-77 241
MS.gene068442.t1 MTR_2g064425 40.496 363 189 8 11 370 53 391 1.10e-75 246
MS.gene068442.t1 MTR_2g010960 29.468 526 342 10 36 541 2 518 1.45e-74 246
MS.gene068442.t1 MTR_6g064980 30.400 500 323 9 48 532 13 502 2.37e-70 235
MS.gene068442.t1 MTR_3g063170 28.974 497 339 8 36 523 2 493 2.08e-67 227
MS.gene068442.t1 MTR_3g465090 29.084 502 342 7 36 528 2 498 8.27e-67 225
MS.gene068442.t1 MTR_3g063140 29.134 508 334 9 36 528 2 498 5.70e-66 223
MS.gene068442.t1 MTR_3g063120 28.745 494 325 9 67 544 6 488 8.07e-65 219
MS.gene068442.t1 MTR_3g052120 29.216 510 338 9 48 544 13 512 1.36e-62 214
MS.gene068442.t1 MTR_7g050990 61.446 166 53 2 193 358 27 181 1.18e-58 210
MS.gene068442.t1 MTR_6g065040 28.889 405 270 7 132 528 2 396 1.42e-54 189
MS.gene068442.t1 MTR_3g015080 45.614 171 55 2 379 549 1 133 2.59e-43 150
MS.gene068442.t1 MTR_3g063160 30.743 296 187 6 36 322 2 288 6.21e-36 136
MS.gene068442.t1 MTR_2g012870 24.433 573 393 16 4 548 194 754 1.25e-33 136
MS.gene068442.t1 MTR_3g058160 25.239 523 335 17 64 548 65 569 8.18e-32 130
MS.gene068442.t1 MTR_2g064295 24.031 516 350 15 64 548 256 760 1.05e-31 130
MS.gene068442.t1 MTR_3g058160 25.239 523 335 17 64 548 256 760 1.52e-31 130
MS.gene068442.t1 MTR_3g058160 25.239 523 335 17 64 548 269 773 1.72e-31 130
MS.gene068442.t1 MTR_3g058160 25.239 523 335 17 64 548 276 780 2.20e-31 129
MS.gene068442.t1 MTR_2g012900 24.952 517 337 17 4 480 194 699 8.51e-31 127
MS.gene068442.t1 MTR_3g058160 24.632 544 333 18 64 548 276 801 6.60e-29 122
MS.gene068442.t1 MTR_7g094970 28.253 269 163 7 67 307 211 477 3.18e-24 107
MS.gene068442.t1 MTR_5g030050 30.189 265 150 8 67 306 3 257 1.13e-23 102
MS.gene068442.t1 MTR_7g011663 30.370 270 154 7 67 304 349 616 2.13e-23 105
MS.gene068442.t1 MTR_7g011770 29.553 291 174 8 67 328 245 533 4.34e-21 97.8
MS.gene068442.t1 MTR_5g081730 37.273 110 64 1 147 251 2 111 1.22e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068442.t1 AT5G23960 39.927 546 321 5 7 549 3 544 6.60e-150 441
MS.gene068442.t1 AT5G23960 39.964 548 320 6 7 549 3 546 7.47e-149 439
MS.gene068442.t1 AT1G70080 38.278 546 327 7 11 548 66 609 6.92e-127 385
MS.gene068442.t1 AT3G14490 37.912 546 327 7 11 549 60 600 8.77e-122 371
MS.gene068442.t1 AT3G14520 36.735 539 333 5 16 549 68 603 1.25e-121 371
MS.gene068442.t1 AT1G31950 36.111 540 335 5 16 549 70 605 2.11e-120 368
MS.gene068442.t1 AT1G31950 36.044 541 335 6 16 549 70 606 8.61e-120 366
MS.gene068442.t1 AT3G14540 36.920 539 332 4 16 549 65 600 8.70e-120 366
MS.gene068442.t1 AT1G33750 35.019 534 341 4 18 549 73 602 2.52e-115 355
MS.gene068442.t1 AT5G44630 35.963 545 338 6 12 548 14 555 8.85e-115 352
MS.gene068442.t1 AT3G32030 35.065 539 342 6 16 549 68 603 4.91e-113 348
MS.gene068442.t1 AT4G13300 36.872 537 328 7 19 548 20 552 9.63e-112 343
MS.gene068442.t1 AT3G29410 34.807 543 346 6 11 549 64 602 1.30e-111 345
MS.gene068442.t1 AT4G20210 34.799 546 343 7 11 548 58 598 6.62e-111 343
MS.gene068442.t1 AT4G15870 34.838 554 335 9 3 548 61 596 2.57e-108 336
MS.gene068442.t1 AT3G29190 34.766 535 323 9 32 549 75 600 3.32e-108 336
MS.gene068442.t1 AT4G20200 35.907 518 314 9 42 548 92 602 4.86e-108 336
MS.gene068442.t1 AT4G13280 36.075 535 331 7 21 548 22 552 1.54e-105 328
MS.gene068442.t1 AT3G29410 35.000 500 319 4 53 549 1 497 1.63e-105 326
MS.gene068442.t1 AT4G20230 33.641 541 337 9 19 546 70 601 1.53e-100 316
MS.gene068442.t1 AT4G20230 33.641 541 337 9 19 546 82 613 3.17e-100 316
MS.gene068442.t1 AT3G14540 37.444 446 272 3 16 457 65 507 3.33e-100 312
MS.gene068442.t1 AT1G31950 36.105 457 281 6 16 465 70 522 1.07e-99 311
MS.gene068442.t1 AT3G29110 34.679 545 345 9 11 548 55 595 4.26e-98 310
MS.gene068442.t1 AT4G16730 31.423 541 354 7 22 549 2 538 2.83e-97 306
MS.gene068442.t1 AT2G23230 33.700 546 347 9 10 545 55 595 3.00e-97 308
MS.gene068442.t1 AT1G66020 32.721 544 357 6 11 548 56 596 4.14e-95 302
MS.gene068442.t1 AT2G23230 33.516 546 343 10 10 545 55 590 1.73e-94 300
MS.gene068442.t1 AT4G13280 34.953 535 307 9 21 548 22 522 3.26e-94 297
MS.gene068442.t1 AT4G16730 31.919 495 322 5 67 549 1 492 1.30e-93 295
MS.gene068442.t1 AT1G48800 31.319 546 359 9 11 546 63 602 4.09e-92 294
MS.gene068442.t1 AT2G24210 31.362 558 364 9 4 549 39 589 2.59e-89 286
MS.gene068442.t1 AT4G16740 31.351 555 358 10 6 549 21 563 4.12e-89 285
MS.gene068442.t1 AT1G61680 31.893 486 321 3 48 528 77 557 2.08e-87 281
MS.gene068442.t1 AT3G25830 31.362 558 357 12 9 549 45 593 2.30e-86 279
MS.gene068442.t1 AT3G25820 31.362 558 357 12 9 549 45 593 2.30e-86 279
MS.gene068442.t1 AT3G25810 32.937 504 317 9 62 549 98 596 1.01e-85 277
MS.gene068442.t1 AT1G61680 31.481 486 316 4 48 528 77 550 4.23e-84 272
MS.gene068442.t1 AT5G48110 37.647 340 207 5 210 548 2 337 2.95e-83 263
MS.gene068442.t1 AT1G48820 30.983 539 322 11 11 543 63 557 7.32e-81 264
MS.gene068442.t1 AT4G16740 34.667 375 226 7 6 370 21 386 1.23e-68 227
MS.gene068442.t1 AT1G66020 34.688 369 232 6 11 373 56 421 6.12e-66 221
MS.gene068442.t1 AT3G25820 32.642 386 241 8 9 383 45 422 2.39e-64 217
MS.gene068442.t1 AT4G16740 35.258 329 195 6 6 324 21 341 1.75e-60 204
MS.gene068442.t1 AT4G16740 35.258 329 195 6 6 324 21 341 1.75e-60 204
MS.gene068442.t1 AT3G25820 33.945 327 197 8 9 324 45 363 3.13e-55 191
MS.gene068442.t1 AT3G25820 33.945 327 197 8 9 324 45 363 3.13e-55 191
MS.gene068442.t1 AT1G61120 24.319 514 345 13 62 548 286 782 1.49e-29 124
MS.gene068442.t1 AT1G79460 23.314 519 349 19 64 548 274 777 1.79e-26 114
MS.gene068442.t1 AT4G02780 30.078 256 149 7 67 294 334 587 4.71e-22 100

Find 93 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6.3:-64566773 MS.gene068442:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6.3:-64567761 MS.gene068442:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6.3:-64567760 MS.gene068442:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6.3:-64565260 MS.gene068442:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6.3:-64566733 MS.gene068442:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6.3:+64566785 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6.3:-64566971 MS.gene068442:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6.3:-64569067 MS.gene068442:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6.3:+64566463 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6.3:-64565266 MS.gene068442:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6.3:-64569104 MS.gene068442:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6.3:-64569103 MS.gene068442:CDS
GATTGACTCAATATGTTGTT+TGG 0.319983 6.3:-64567883 MS.gene068442:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6.3:+64567061 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6.3:-64566132 MS.gene068442:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6.3:-64566550 MS.gene068442:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6.3:-64564908 MS.gene068442:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6.3:+64565314 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6.3:-64565259 MS.gene068442:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6.3:-64565314 MS.gene068442:CDS
TTCATGTATTCCTCTGTTGT+TGG 0.377218 6.3:+64565405 None:intergenic
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6.3:+64566786 None:intergenic
ATTGACTCAATATGTTGTTT+GGG 0.382202 6.3:-64567882 MS.gene068442:CDS
AAACGTAATGGAACTTTAGT+TGG 0.382677 6.3:+64564808 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6.3:-64566144 MS.gene068442:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6.3:+64566807 None:intergenic
CATACTTGGAATGTTATATG+AGG 0.398446 6.3:-64564921 MS.gene068442:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6.3:-64564935 MS.gene068442:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6.3:-64564831 MS.gene068442:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6.3:+64566902 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6.3:-64564858 MS.gene068442:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6.3:+64566113 None:intergenic
GCAAATTGATAAACTAAAAC+AGG 0.437343 6.3:-64567961 MS.gene068442:CDS
GTTTCTCTATAAACCACTCT+TGG 0.439981 6.3:-64566099 MS.gene068442:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6.3:-64566740 MS.gene068442:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6.3:-64565346 MS.gene068442:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6.3:-64565313 MS.gene068442:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6.3:+64566566 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6.3:-64565345 MS.gene068442:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6.3:+64566506 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6.3:-64566985 MS.gene068442:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6.3:+64564664 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6.3:-64567073 MS.gene068442:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6.3:-64566059 MS.gene068442:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6.3:+64566903 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6.3:+64564665 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6.3:-64567028 MS.gene068442:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6.3:+64564670 None:intergenic
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6.3:+64565357 None:intergenic
AGACGAAATTAATCAAGTGT+TGG 0.523135 6.3:-64567841 MS.gene068442:CDS
CATGGTCTTTACGTTTCACC+TGG 0.523602 6.3:-64567726 MS.gene068442:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6.3:-64566606 MS.gene068442:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6.3:-64566508 MS.gene068442:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6.3:-64567752 MS.gene068442:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6.3:+64564669 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6.3:+64565451 None:intergenic
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6.3:-64569102 MS.gene068442:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6.3:-64566498 MS.gene068442:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6.3:+64566835 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6.3:-64564920 MS.gene068442:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6.3:+64564696 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6.3:+64566892 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6.3:-64567985 MS.gene068442:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6.3:-64566886 MS.gene068442:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6.3:-64567744 MS.gene068442:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6.3:-64565370 MS.gene068442:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6.3:-64567792 MS.gene068442:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6.3:-64565449 MS.gene068442:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6.3:+64567766 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6.3:-64565351 MS.gene068442:CDS
GATGACACGTATGATGCATA+CGG 0.587584 6.3:-64566446 MS.gene068442:CDS
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6.3:+64569066 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6.3:+64566920 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6.3:-64565384 MS.gene068442:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6.3:+64566086 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6.3:-64567027 MS.gene068442:CDS
GACAACTACACACATTCTGA+AGG 0.603730 6.3:-64564730 MS.gene068442:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6.3:-64569100 MS.gene068442:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6.3:-64566782 MS.gene068442:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6.3:-64567063 MS.gene068442:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6.3:+64565358 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6.3:-64566612 MS.gene068442:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6.3:-64569101 MS.gene068442:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6.3:+64564767 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6.3:-64564842 MS.gene068442:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6.3:+64566984 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6.3:+64565431 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6.3:-64565238 MS.gene068442:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6.3:-64565454 MS.gene068442:CDS
AATTGATAAACTAAAACAGG+AGG 0.674763 6.3:-64567958 MS.gene068442:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6.3:-64565446 MS.gene068442:CDS
TAACTATATACCAACAACAG+AGG 0.696944 6.3:-64565415 MS.gene068442:CDS
AGTGTTGGAAGATATCCACA+AGG 0.760785 6.3:-64567826 MS.gene068442:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGATATAAATAAATAG+GGG + chr6.3:64565531-64565550 None:intergenic 10.0%
!! AGAAAAAGATATAAATAAAT+AGG + chr6.3:64565533-64565552 None:intergenic 10.0%
!! GAAAAAGATATAAATAAATA+GGG + chr6.3:64565532-64565551 None:intergenic 10.0%
!! TAGATAATTAAAGATATTAA+CGG - chr6.3:64565020-64565039 MS.gene068442:intron 10.0%
!! TTTAAAAGAAGATTATATAT+TGG - chr6.3:64568203-64568222 MS.gene068442:intron 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6.3:64567146-64567165 None:intergenic 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6.3:64566536-64566555 MS.gene068442:CDS 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6.3:64567145-64567164 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6.3:64567659-64567678 MS.gene068442:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6.3:64567602-64567621 MS.gene068442:intron 10.0%
!! AAAGAATTAATTAATGTACT+TGG + chr6.3:64565499-64565518 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6.3:64568759-64568778 MS.gene068442:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6.3:64568322-64568341 None:intergenic 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6.3:64567196-64567215 None:intergenic 15.0%
!! GAATCATTAATATTAATAAG+TGG + chr6.3:64566133-64566152 None:intergenic 15.0%
!! TATATTATGAAAAGTGATTA+AGG - chr6.3:64565111-64565130 MS.gene068442:intron 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6.3:64568748-64568767 None:intergenic 15.0%
!!! ATGATTGATTTACATAAAAT+AGG - chr6.3:64566424-64566443 MS.gene068442:CDS 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6.3:64567538-64567557 MS.gene068442:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6.3:64566294-64566313 MS.gene068442:intron 15.0%
!!! TAATTTTTTAACTTTGATCA+CGG - chr6.3:64566263-64566282 MS.gene068442:intron 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6.3:64567200-64567219 MS.gene068442:intron 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6.3:64567911-64567930 MS.gene068442:CDS 15.0%
!! AAATAAAACCAAGAGAAAAT+AGG - chr6.3:64565171-64565190 MS.gene068442:intron 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6.3:64566620-64566639 None:intergenic 20.0%
!! AGACAAAAAAATTTCTCAAA+AGG + chr6.3:64565450-64565469 None:intergenic 20.0%
!! ATGTGTAATAATATCTATGT+TGG + chr6.3:64565297-64565316 None:intergenic 20.0%
!! CATATTTACCAAAAATACAT+AGG - chr6.3:64568281-64568300 MS.gene068442:intron 20.0%
!! GACAAAAAAATTTCTCAAAA+GGG + chr6.3:64565449-64565468 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6.3:64565837-64565856 MS.gene068442:intron 20.0%
!! TTGATTTACATAAAATAGGA+AGG - chr6.3:64566428-64566447 MS.gene068442:CDS 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6.3:64567663-64567682 MS.gene068442:intron 20.0%
!!! AATTTTTTAACTTTGATCAC+GGG - chr6.3:64566264-64566283 MS.gene068442:intron 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6.3:64565769-64565788 None:intergenic 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6.3:64566306-64566325 None:intergenic 20.0%
!!! ATATGCGTTATTTTTTCAAA+AGG - chr6.3:64565668-64565687 MS.gene068442:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6.3:64567186-64567205 MS.gene068442:intron 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6.3:64567473-64567492 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6.3:64567662-64567681 MS.gene068442:intron 20.0%
!!! TATGCGTTATTTTTTCAAAA+GGG - chr6.3:64565669-64565688 MS.gene068442:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6.3:64568241-64568260 None:intergenic 20.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6.3:64568964-64568983 MS.gene068442:intron 25.0%
! AATTGATAAACTAAAACAGG+AGG - chr6.3:64565864-64565883 MS.gene068442:intron 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6.3:64567040-64567059 None:intergenic 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6.3:64568902-64568921 MS.gene068442:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6.3:64568991-64569010 MS.gene068442:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6.3:64568509-64568528 MS.gene068442:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6.3:64567039-64567058 None:intergenic 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6.3:64566332-64566351 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6.3:64567957-64567976 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAC+AGG - chr6.3:64565861-64565880 MS.gene068442:intron 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6.3:64565357-64565376 None:intergenic 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6.3:64565737-64565756 None:intergenic 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6.3:64567362-64567381 None:intergenic 25.0%
! GTTGTTCACGTAAAAAAAAA+GGG + chr6.3:64564794-64564813 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6.3:64567040-64567059 MS.gene068442:CDS 25.0%
! TGTTGTTCACGTAAAAAAAA+AGG + chr6.3:64564795-64564814 None:intergenic 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6.3:64568914-64568933 MS.gene068442:intron 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6.3:64565724-64565743 MS.gene068442:intron 25.0%
!! AAACTAACTCTCTCTTTTAA+AGG - chr6.3:64565585-64565604 MS.gene068442:intron 25.0%
!! ATAAATAAATAGGGGTATGT+TGG + chr6.3:64565523-64565542 None:intergenic 25.0%
!! ATTGACTCAATATGTTGTTT+GGG - chr6.3:64565940-64565959 MS.gene068442:intron 25.0%
!! TCAAAAGGGTCTTATAATTA+GGG - chr6.3:64565683-64565702 MS.gene068442:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6.3:64567408-64567427 MS.gene068442:intron 25.0%
!! TTCAAAAGGGTCTTATAATT+AGG - chr6.3:64565682-64565701 MS.gene068442:intron 25.0%
!! TTGTGATCAGAACATTTTTA+GGG - chr6.3:64567987-64568006 MS.gene068442:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6.3:64567419-64567438 MS.gene068442:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6.3:64568965-64568984 None:intergenic 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6.3:64565922-64565941 None:intergenic 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6.3:64566061-64566080 MS.gene068442:CDS 25.0%
!!! ATTTTTTAACTTTGATCACG+GGG - chr6.3:64566265-64566284 MS.gene068442:intron 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6.3:64566540-64566559 MS.gene068442:CDS 25.0%
!!! TCTTACTTCTTTTAAGAAGT+GGG + chr6.3:64567806-64567825 None:intergenic 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6.3:64565816-64565835 MS.gene068442:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6.3:64566062-64566081 MS.gene068442:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6.3:64567203-64567222 MS.gene068442:intron 25.0%
AACACATCAACAATATCAAG+TGG - chr6.3:64568438-64568457 MS.gene068442:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6.3:64566794-64566813 MS.gene068442:CDS 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6.3:64566582-64566601 None:intergenic 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6.3:64566030-64566049 MS.gene068442:CDS 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6.3:64566795-64566814 MS.gene068442:CDS 30.0%
AGACGAAATTAATCAAGTGT+TGG - chr6.3:64565981-64566000 MS.gene068442:intron 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6.3:64566749-64566768 MS.gene068442:CDS 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6.3:64566059-64566078 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr6.3:64564875-64564894 None:intergenic 30.0%
ATGTACTTGGAAATACCAAA+AGG + chr6.3:64565486-64565505 None:intergenic 30.0%
ATTTCACGCAATATTCTTTG+TGG - chr6.3:64568632-64568651 MS.gene068442:intron 30.0%
CATAACATTACACGGATAAT+GGG + chr6.3:64566485-64566504 None:intergenic 30.0%
CATACTTGGAATGTTATATG+AGG - chr6.3:64568901-64568920 MS.gene068442:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6.3:64568511-64568530 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6.3:64568508-64568527 MS.gene068442:intron 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6.3:64567245-64567264 MS.gene068442:intron 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6.3:64569129-64569148 None:intergenic 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6.3:64567246-64567265 MS.gene068442:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6.3:64568407-64568426 MS.gene068442:intron 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6.3:64566117-64566136 None:intergenic 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6.3:64567712-64567731 None:intergenic 30.0%
TCAAAAGGGTCCTATAATTA+GGG + chr6.3:64565435-64565454 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6.3:64568980-64568999 MS.gene068442:intron 30.0%
TGTACTTGGAAATACCAAAA+GGG + chr6.3:64565485-64565504 None:intergenic 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6.3:64565330-64565349 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6.3:64566181-64566200 MS.gene068442:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6.3:64569017-64569036 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6.3:64567140-64567159 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6.3:64566012-64566031 MS.gene068442:intron 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6.3:64566014-64566033 None:intergenic 30.0%
! CTCTTTTTATAAGACCCTTT+TGG - chr6.3:64565468-64565487 MS.gene068442:CDS 30.0%
! CTTGTGATCAGAACATTTTT+AGG - chr6.3:64567986-64568005 MS.gene068442:CDS 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6.3:64566851-64566870 MS.gene068442:CDS 30.0%
! GATTGACTCAATATGTTGTT+TGG - chr6.3:64565939-64565958 MS.gene068442:intron 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6.3:64565220-64565239 MS.gene068442:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6.3:64565260-64565279 MS.gene068442:CDS 30.0%
! TCCTTTTTCCTCAAAAATGT+TGG + chr6.3:64565271-64565290 None:intergenic 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6.3:64567094-64567113 None:intergenic 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6.3:64568952-64568971 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6.3:64567807-64567826 None:intergenic 30.0%
!! CTTGGACATCTATTTTGAAA+CGG - chr6.3:64565078-64565097 MS.gene068442:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6.3:64566472-64566491 None:intergenic 30.0%
!! TCCAACATTTTTGAGGAAAA+AGG - chr6.3:64565267-64565286 MS.gene068442:CDS 30.0%
!! TGTGATCAGAACATTTTTAG+GGG - chr6.3:64567988-64568007 MS.gene068442:intron 30.0%
!! TTCTTTTAAGAAGTGGGTAA+TGG + chr6.3:64567800-64567819 None:intergenic 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6.3:64567273-64567292 MS.gene068442:intron 30.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr6.3:64564853-64564872 None:intergenic 30.0%
AAAATAGGAAGGATCATCGT+AGG - chr6.3:64566439-64566458 MS.gene068442:CDS 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6.3:64568867-64568886 MS.gene068442:intron 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6.3:64569058-64569077 None:intergenic 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6.3:64569029-64569048 None:intergenic 35.0%
ACCATGAATCATCATATGTG+AGG + chr6.3:64566841-64566860 None:intergenic 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6.3:64568477-64568496 MS.gene068442:intron 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6.3:64567089-64567108 MS.gene068442:intron 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6.3:64566570-64566589 MS.gene068442:CDS 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6.3:64568394-64568413 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6.3:64566708-64566727 MS.gene068442:intron 35.0%
CCAAAAATACATAGGAGTTC+AGG - chr6.3:64568289-64568308 MS.gene068442:intron 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6.3:64565216-64565235 None:intergenic 35.0%
CTCAAAAGGGTCCTATAATT+AGG + chr6.3:64565436-64565455 None:intergenic 35.0%
GAACAGAGCATAACATTACA+CGG + chr6.3:64566493-64566512 None:intergenic 35.0%
GCATAACATTACACGGATAA+TGG + chr6.3:64566486-64566505 None:intergenic 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6.3:64567723-64567742 MS.gene068442:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6.3:64566570-64566589 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6.3:64568476-64568495 MS.gene068442:intron 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6.3:64567678-64567697 MS.gene068442:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6.3:64567690-64567709 MS.gene068442:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6.3:64567049-64567068 MS.gene068442:CDS 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6.3:64567739-64567758 None:intergenic 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6.3:64567206-64567225 MS.gene068442:intron 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6.3:64565232-64565251 MS.gene068442:intron 35.0%
TTCATGTATTCCTCTGTTGT+TGG + chr6.3:64568420-64568439 None:intergenic 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6.3:64567319-64567338 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6.3:64567324-64567343 MS.gene068442:intron 35.0%
! AAGGGTCTTATAATTAGGGA+CGG - chr6.3:64565687-64565706 MS.gene068442:intron 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6.3:64567088-64567107 None:intergenic 35.0%
! CCTGAACTCCTATGTATTTT+TGG + chr6.3:64568292-64568311 None:intergenic 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6.3:64568546-64568565 None:intergenic 35.0%
! TTCTGATCACAAGATTTGCT+AGG + chr6.3:64567979-64567998 None:intergenic 35.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6.3:64564759-64564778 None:intergenic 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6.3:64567210-64567229 MS.gene068442:intron 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6.3:64566863-64566882 MS.gene068442:CDS 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6.3:64566601-64566620 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6.3:64565182-64565201 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6.3:64566857-64566876 MS.gene068442:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6.3:64567282-64567301 MS.gene068442:intron 35.0%
!!! GACATCTATTTTGAAACGGA+GGG - chr6.3:64565082-64565101 MS.gene068442:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6.3:64567272-64567291 MS.gene068442:intron 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr6.3:64564854-64564873 None:intergenic 35.0%
AACCAATTCAAGGACAAGCA+AGG - chr6.3:64566759-64566778 MS.gene068442:CDS 40.0%
AAGGGTCCTATAATTAGGGA+CGG + chr6.3:64565431-64565450 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6.3:64565366-64565385 MS.gene068442:CDS 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6.3:64567314-64567333 MS.gene068442:intron 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6.3:64565197-64565216 MS.gene068442:intron 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr6.3:64565060-64565079 MS.gene068442:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6.3:64565367-64565386 MS.gene068442:CDS 40.0%
GACAACTACACACATTCTGA+AGG - chr6.3:64569092-64569111 MS.gene068442:CDS 40.0%
GACGGAGGTAGTATATTACA+AGG + chr6.3:64565413-64565432 None:intergenic 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6.3:64567763-64567782 MS.gene068442:CDS 40.0%
GATGACACGTATGATGCATA+CGG - chr6.3:64567376-64567395 MS.gene068442:intron 40.0%
GCCTCACATATGATGATTCA+TGG - chr6.3:64566837-64566856 MS.gene068442:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6.3:64565198-64565217 MS.gene068442:intron 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6.3:64567018-64567037 None:intergenic 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6.3:64567950-64567969 None:intergenic 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6.3:64565385-64565404 None:intergenic 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6.3:64565253-64565272 None:intergenic 40.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6.3:64564755-64564774 MS.gene068442:CDS 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6.3:64565326-64565345 None:intergenic 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6.3:64566764-64566783 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6.3:64568471-64568490 MS.gene068442:intron 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6.3:64568887-64568906 MS.gene068442:intron 40.0%
! AGTGTTGGAAGATATCCACA+AGG - chr6.3:64565996-64566015 MS.gene068442:intron 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6.3:64566553-64566572 MS.gene068442:CDS 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6.3:64566905-64566924 None:intergenic 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6.3:64565241-64565260 MS.gene068442:CDS 40.0%
! GTGCATTGACATATGTGAAG+TGG - chr6.3:64565051-64565070 MS.gene068442:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6.3:64569052-64569071 MS.gene068442:intron 40.0%
!!! GGACATCTATTTTGAAACGG+AGG - chr6.3:64565081-64565100 MS.gene068442:intron 40.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6.3:64568467-64568486 None:intergenic 45.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6.3:64564719-64564738 MS.gene068442:CDS 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6.3:64566444-64566463 MS.gene068442:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6.3:64568368-64568387 MS.gene068442:intron 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6.3:64568452-64568471 MS.gene068442:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6.3:64566977-64566996 MS.gene068442:CDS 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6.3:64566096-64566115 MS.gene068442:CDS 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6.3:64566922-64566941 None:intergenic 45.0%
CTACCTCCGTCCCTAATTAT+AGG - chr6.3:64565422-64565441 MS.gene068442:CDS 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6.3:64566936-64566955 MS.gene068442:CDS 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6.3:64567082-64567101 MS.gene068442:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6.3:64568584-64568603 MS.gene068442:intron 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6.3:64568468-64568487 None:intergenic 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6.3:64565202-64565221 MS.gene068442:intron 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6.3:64566923-64566942 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6.3:64568563-64568582 MS.gene068442:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6.3:64566562-64566581 None:intergenic 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6.3:64566552-64566571 MS.gene068442:CDS 45.0%
! GGTCTTATAATTAGGGACGG+AGG - chr6.3:64565690-64565709 MS.gene068442:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6.3:64567216-64567235 MS.gene068442:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6.3:64566070-64566089 MS.gene068442:CDS 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6.3:64566933-64566952 None:intergenic 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6.3:64566078-64566097 MS.gene068442:CDS 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6.3:64566876-64566895 MS.gene068442:CDS 45.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6.3:64567535-64567554 MS.gene068442:intron 5.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6.3:64566151-64566170 MS.gene068442:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6.3:64567149-64567168 None:intergenic 5.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6.3:64568373-64568392 MS.gene068442:intron 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6.3:64567259-64567278 None:intergenic 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6.3:64568556-64568575 MS.gene068442:intron 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6.3:64564721-64564740 MS.gene068442:CDS 50.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6.3:64564718-64564737 MS.gene068442:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6.3:64565314-64565333 MS.gene068442:CDS 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6.3:64566970-64566989 MS.gene068442:CDS 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6.3:64568562-64568581 MS.gene068442:intron 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6.3:64564720-64564739 MS.gene068442:CDS 50.0%
GGTCCTATAATTAGGGACGG+AGG + chr6.3:64565428-64565447 None:intergenic 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6.3:64566990-64567009 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6.3:64568374-64568393 None:intergenic 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6.3:64566972-64566991 None:intergenic 50.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6.3:64564732-64564751 None:intergenic 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6.3:64564731-64564750 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6.3:64568376-64568395 MS.gene068442:intron 55.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6.3:64564722-64564741 MS.gene068442:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6.3:64564728-64564747 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 64564678 64569166 64564678 ID=MS.gene068442
chr6.3 mRNA 64564678 64569166 64564678 ID=MS.gene068442.t1;Parent=MS.gene068442
chr6.3 exon 64569068 64569166 64569068 ID=MS.gene068442.t1.exon1;Parent=MS.gene068442.t1
chr6.3 CDS 64569068 64569166 64569068 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
chr6.3 exon 64567727 64568006 64567727 ID=MS.gene068442.t1.exon2;Parent=MS.gene068442.t1
chr6.3 CDS 64567727 64568006 64567727 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
chr6.3 exon 64566721 64567093 64566721 ID=MS.gene068442.t1.exon3;Parent=MS.gene068442.t1
chr6.3 CDS 64566721 64567093 64566721 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
chr6.3 exon 64566404 64566622 64566404 ID=MS.gene068442.t1.exon4;Parent=MS.gene068442.t1
chr6.3 CDS 64566404 64566622 64566404 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
chr6.3 exon 64566025 64566163 64566025 ID=MS.gene068442.t1.exon5;Parent=MS.gene068442.t1
chr6.3 CDS 64566025 64566163 64566025 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
chr6.3 exon 64565239 64565487 64565239 ID=MS.gene068442.t1.exon6;Parent=MS.gene068442.t1
chr6.3 CDS 64565239 64565487 64565239 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
chr6.3 exon 64564678 64564971 64564678 ID=MS.gene068442.t1.exon7;Parent=MS.gene068442.t1
chr6.3 CDS 64564678 64564971 64564678 ID=cds.MS.gene068442.t1;Parent=MS.gene068442.t1
Gene Sequence

>MS.gene068442

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGTACGTATAGAATGCCCTTTTTTTTTACGTGAACAACAATGATTTTTTTTTAAAGATCAACAACAATGATACTCCCTCTGTTTCAAAATACATGTCCAATTTTTGCAATGTGCACTATTCACTTGACTTACTTTGACTATAGTTTTTAATTAATGTATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTATCTTGACAAATATTTTCAAAATATTAAATTTTTATAATTTTTTACTTTAGATAATTAAAGATATTAACGGTCAAAATTGTGCATTGACATATGTGAAGTGGTTGACTTGGACATCTATTTTGAAACGGAGGGAGTATATATATTATGAAAAGTGATTAAGGAGTTCTAGAAACACTATCTTTCTCATATTTCACTCTAAAATAAAACCAAGAGAAAATAGGTAGAGCTATAGCAAACACTCCAAAGGGTTGGTTATTTGTTAGCAATAGGAATGAAACCTGGTGTTTTAGGATTTCCAACATTTTTGAGGAAAAAGGATTTCCAACATAGATATTATTACACATTGCACACCAACCACACTTGGATCGTATAATTAATAAACCACTTAATATTACTAACATTGCACACTCCAAAGGGATTCAAGTTACTCACATTTACCTTGTAATATACTACCTCCGTCCCTAATTATAGGACCCTTTTGAGAAATTTTTTTGTCTCTTTTTATAAGACCCTTTTGGTATTTCCAAGTACATTAATTAATTCTTTACCAACATACCCCTATTTATTTATATCTTTTTCTTCAATCAACATTAAATATTACGTTGAAAACATAAACTAACTCTCTCTTTTAAAGGATAAAATTGTAAAAACAATACTAATTACTAACAAATTTATTACACTTATCAATTTTCTTAATATGCGTTATTTTTTCAAAAGGGTCTTATAATTAGGGACGGAGGTAGTATATATTTTCAAGAATGCCAATAATATAGGATCTTTTGACTAAATGCATCCTTTCAAATAACAATTAAGTGTCATTTATCAATTAATTTTAAAATCATATTCATGTTTTGATTACATACAGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAACAGGAGGTTAGACAAATGCTTGTCTCAAAAATTGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTTGTTTGGGTGTCAGCTATTATTTTGAAGACGAAATTAATCAAGTGTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGGTATTTATATCTCCACTTATTAATATTAATGATTCATTTTTTATATTTTAATTTGGATCACTATTGAGTAAAACAAACTTGTGTGGTAGTTTTTAGTTTTTTTTTTTTAATTCTAATCGTCAAATTAATACTTTAATTTACAACATAATTTTTTAACTTTGATCACGGGGAGTATCTAATATAAACCTCTAAAAAATGGTTTAAGTATAGACCTTTACATTTTTAGTAACAACGAGAGTTTTATAATACTAAAAATTAAAGAATAACATAAGTATTTAACTTTTTCTTGCATTAAAAAAAAAAAAGATGATTGATTTACATAAAATAGGAAGGATCATCGTAGGATCGGATCCATATTAAACAACCCATTATCCGTGTAATGTTATGCTCTGTTCTTTACATTATTCGCTTTTACATAATTATATTTTTGATATCATTAGGCCGGTTTACCTATAGGGTAGCCATCTTATTAAGGAAGAACCTTTTTCATACTCTAGAACCACACTATACATTATCTTAATTGCTTATTGAATTTTTTAATCTTGTTTTAGTTTCTTATTTACGTATACTTATAAATTAAAACATCTCTAATGATTGTTCAACATTGTCGTGGTTTTCTAATAAAAATATTAGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTAAGCACTATATCCACACCCTCCTTAATTTAAAATTAAATTGAATTCAAAAACTAACTACTCTAATTGCCTATAATATTTTTGGTCTTTATATATAGGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTTAGCACATCATATAATCAAATAAGCAACCAAAATTTAGAGATAGAAAAACTTGAAATTTATCTGTATTTAAGTATTGAAATTAAGTGATGATAAAATTAAATAATAACTTTTAGGTGGTTGCTAATTCTATTTTTTTTAAAAGTAAAATAGACTTTTTTTTTTATCATATATTTATACACGGTCTAATTTTGTCAACAAAAGTATAACAATTAATATTATAATGAAAATGAATTTTAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTACCCACTTCTTAAAAGAAGTAAGAGTTTTATTTTATTGATAAAATTTGTTTCTTTTCTTGATTTAATTTATTAAACAAACAAACAAATATTTCATTTTCAATTTTATCTTGTTATCAGAATAAAATTTTAGGATTTAATTTGCATCCACTCTCCGTATAGATACATACATAGATCCTAGCAAATCTTGTGATCAGAACATTTTTAGGGGCTTTGTTGAAATTGACATTATAGAGTATCAACATGATGTTATTTGATTGAAAGTATATGTTAAACATATTTATACTATCAATGCATAAAAACTAGTTTAAATAACTTTTTATTAGTTGTTTTATGAACTCAATTTGTAGTAATTACTAGAAGAAATTTTGTTTTGTCAAAATTAGCTTTTTTGTAATTTTAATTTAAAAGAAGATTATATATTGGCAGTTTAATTAACCGTAGATAATAGTTCAACAAAATTTCGAATACACTTTGACATCATATTTACCAAAAATACATAGGAGTTCAGGTACATAACCTATTAACAATTCTACTATATTTTATAACAATGACAGTTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAATACATGAACACATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGGTATTTTTTTTTTATCTAAATATATAATTTCACGCAATATTCTTTGTGGCTAATATATAAGAGATAATTATTGTTCATTTTTGTAAACAAGGTTAACACAACTGTTTAAATACAATTTACAATGTTGATATTTTTGTAACCGTCTTAAGAGTTAATATAATAAGATGACATAATGGTGAAATGTGACTTTTACACTGTAACTGCATAGTCATTAAACTATTGATATATCTATTGTATCTCATAGTGTATATATTTTTTGATAAACAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>MS.gene068442.t1

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKQEVRQMLVSKIENPLKKVNLIDSICCLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAITHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT