Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068494.t1 | RHN65959.1 | 51.6 | 306 | 47 | 2 | 12 | 216 | 1 | 306 | 4.20E-73 | 284.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068494.t1 | A0A396IK51 | 51.6 | 306 | 47 | 2 | 12 | 216 | 1 | 306 | 3.0e-73 | 284.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene068494 | 0.80556 | 1.26E-49 | -1.69E-46 |
| MS.gene051575 | MS.gene068494 | 0.812461 | 4.19E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene068494 | 0.850915 | 1.25E-60 | -1.69E-46 |
| MS.gene05329 | MS.gene068494 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene068494 | 0.806975 | 6.34E-50 | -1.69E-46 |
| MS.gene055952 | MS.gene068494 | 0.828895 | 6.97E-55 | -1.69E-46 |
| MS.gene05669 | MS.gene068494 | 0.813783 | 2.15E-51 | -1.69E-46 |
| MS.gene059276 | MS.gene068494 | 0.811963 | 5.38E-51 | -1.69E-46 |
| MS.gene059458 | MS.gene068494 | 0.812004 | 5.27E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene068494 | 0.819264 | 1.27E-52 | -1.69E-46 |
| MS.gene060654 | MS.gene068494 | 0.804327 | 2.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068494.t1 | MTR_8g469580 | 46.021 | 289 | 55 | 5 | 1 | 188 | 93 | 381 | 5.58e-71 | 224 |
| MS.gene068494.t1 | MTR_8g056180 | 27.987 | 318 | 122 | 7 | 1 | 213 | 1 | 316 | 1.01e-29 | 114 |
| MS.gene068494.t1 | MTR_1g052090 | 31.818 | 242 | 110 | 6 | 1 | 191 | 78 | 315 | 3.25e-28 | 110 |
| MS.gene068494.t1 | MTR_1g044605 | 28.296 | 311 | 116 | 7 | 1 | 206 | 76 | 384 | 9.20e-28 | 109 |
| MS.gene068494.t1 | MTR_6g463930 | 28.421 | 285 | 122 | 8 | 1 | 205 | 86 | 368 | 1.65e-21 | 92.8 |
| MS.gene068494.t1 | MTR_0084s0060 | 31.140 | 228 | 123 | 9 | 1 | 212 | 95 | 304 | 2.59e-17 | 80.1 |
| MS.gene068494.t1 | MTR_3g455890 | 43.678 | 87 | 48 | 1 | 127 | 212 | 316 | 402 | 5.47e-16 | 77.0 |
| MS.gene068494.t1 | MTR_7g070630 | 43.678 | 87 | 48 | 1 | 127 | 212 | 323 | 409 | 4.92e-15 | 73.9 |
| MS.gene068494.t1 | MTR_3g080720 | 41.379 | 87 | 50 | 1 | 127 | 212 | 314 | 400 | 8.84e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGGAAGACTACGATTT+TGG | 0.212526 | 4.2:-58281569 | MS.gene068494:CDS |
| CCGCGAGATTAACCGTGTTT+TGG | 0.250116 | 4.2:-58282386 | MS.gene068494:CDS |
| ATATTTATACTTCGGCAAAT+TGG | 0.292959 | 4.2:-58281772 | MS.gene068494:CDS |
| TAACATGCAAAATTACTTTC+AGG | 0.304161 | 4.2:-58281627 | MS.gene068494:CDS |
| TGCCGAAGTATAAATATATT+CGG | 0.332108 | 4.2:+58281778 | None:intergenic |
| GGAGAAGGCTGTCGGGAAAC+TGG | 0.366291 | 4.2:-58282330 | MS.gene068494:CDS |
| GAAGCTATGTGTCCAAGGTT+AGG | 0.370540 | 4.2:-58282432 | MS.gene068494:CDS |
| AATCATGTCATTAATATTGT+AGG | 0.380882 | 4.2:+58282048 | None:intergenic |
| AAGCTATGTGTCCAAGGTTA+GGG | 0.405319 | 4.2:-58282431 | MS.gene068494:CDS |
| AATCAATCATCACGCTGCTC+TGG | 0.430373 | 4.2:+58281473 | None:intergenic |
| GGACATTCAGATCGACTTAG+AGG | 0.438006 | 4.2:-58281537 | MS.gene068494:CDS |
| TCCTCCTATGCATCCGGCAT+TGG | 0.459915 | 4.2:-58281801 | MS.gene068494:CDS |
| TGCTCTGGCTGCCCATCCTG+AGG | 0.463963 | 4.2:+58281488 | None:intergenic |
| TCTGCATGTTAGCGAACTGC+TGG | 0.471154 | 4.2:+58281702 | None:intergenic |
| GGCCGAATATATTTATACTT+CGG | 0.472704 | 4.2:-58281780 | MS.gene068494:CDS |
| CACCCGCATTCTCACACAAC+AGG | 0.475249 | 4.2:+58281987 | None:intergenic |
| GCCTCGTGGTCAAGAGGCGT+GGG | 0.488740 | 4.2:-58282308 | MS.gene068494:CDS |
| GTTGAGAGGAGAAGGCTGTC+GGG | 0.491715 | 4.2:-58282337 | MS.gene068494:CDS |
| AAAATTACTTTCAGGCGACC+AGG | 0.492876 | 4.2:-58281619 | MS.gene068494:CDS |
| TGTCCAAGGTTAGGGGTAAG+AGG | 0.504566 | 4.2:-58282423 | MS.gene068494:CDS |
| TAAATATATTCGGCCAATGC+CGG | 0.507222 | 4.2:+58281788 | None:intergenic |
| TCGGCCAATGCCGGATGCAT+AGG | 0.509365 | 4.2:+58281797 | None:intergenic |
| GGCCTCGTGGTCAAGAGGCG+TGG | 0.513234 | 4.2:-58282309 | MS.gene068494:CDS |
| TGAATATCCTCCTATGCATC+CGG | 0.516569 | 4.2:-58281807 | MS.gene068494:CDS |
| ACAGTCAGACTTCTTCCCTC+AGG | 0.517467 | 4.2:-58281504 | MS.gene068494:CDS |
| TTATACTTCGGCAAATTGGA+TGG | 0.522440 | 4.2:-58281768 | MS.gene068494:CDS |
| CTCGTAGGGTTGATGAAAGA+AGG | 0.523271 | 4.2:-58282277 | MS.gene068494:intron |
| GAGAGCTGAGCAGAGAGAGA+AGG | 0.529169 | 4.2:-58281594 | MS.gene068494:CDS |
| CAAAACACGGTTAATCTCGC+GGG | 0.533027 | 4.2:+58282387 | None:intergenic |
| TCAGACTTCTTCCCTCAGGA+TGG | 0.534764 | 4.2:-58281500 | MS.gene068494:CDS |
| GCCAATGCCGGATGCATAGG+AGG | 0.544891 | 4.2:+58281800 | None:intergenic |
| GATACAGTACAAGAGGAAGC+CGG | 0.548978 | 4.2:-58281681 | MS.gene068494:CDS |
| GCAGAGAGAGAAGGAGATTG+AGG | 0.552301 | 4.2:-58281585 | MS.gene068494:CDS |
| TCTCTGCTCAGCTCTCTCCC+TGG | 0.552387 | 4.2:+58281601 | None:intergenic |
| GGGAAGAAGTCTGACTGTGA+AGG | 0.553057 | 4.2:+58281509 | None:intergenic |
| GAACAGGAGCAGATGGATGT+AGG | 0.554611 | 4.2:-58282082 | MS.gene068494:CDS |
| ACATCACAGACCGCCGGTAC+AGG | 0.555819 | 4.2:+58282358 | None:intergenic |
| GATCCTCTTACCCCTAACCT+TGG | 0.564713 | 4.2:+58282420 | None:intergenic |
| ATACAGTACAAGAGGAAGCC+GGG | 0.566114 | 4.2:-58281680 | MS.gene068494:CDS |
| CGTGGGATGAACTACTCGTA+GGG | 0.569451 | 4.2:-58282291 | MS.gene068494:CDS |
| TGTTGAGAGGAGAAGGCTGT+CGG | 0.569949 | 4.2:-58282338 | MS.gene068494:CDS |
| GGAAGAAGTCTGACTGTGAA+GGG | 0.570696 | 4.2:+58281510 | None:intergenic |
| GCTCTGGCTGCCCATCCTGA+GGG | 0.571280 | 4.2:+58281489 | None:intergenic |
| AATGCAGTCTGTGAGAGAGC+TGG | 0.572197 | 4.2:-58282454 | MS.gene068494:CDS |
| AGCTGGAAGCTATGTGTCCA+AGG | 0.576410 | 4.2:-58282437 | MS.gene068494:CDS |
| ACATGCAGATACAGTACAAG+AGG | 0.576744 | 4.2:-58281688 | MS.gene068494:CDS |
| CAGACTTCTTCCCTCAGGAT+GGG | 0.591457 | 4.2:-58281499 | MS.gene068494:CDS |
| CGGCGGTCTGTGATGTTGAG+AGG | 0.591838 | 4.2:-58282351 | MS.gene068494:CDS |
| CTCTCAACATCACAGACCGC+CGG | 0.592617 | 4.2:+58282352 | None:intergenic |
| AAACTGGCCTCGTGGTCAAG+AGG | 0.607931 | 4.2:-58282314 | MS.gene068494:CDS |
| TAACCTGTTGTGTGAGAATG+CGG | 0.608099 | 4.2:-58281990 | MS.gene068494:CDS |
| GAGTAACAAATCGATAGCAA+TGG | 0.609149 | 4.2:-58282488 | MS.gene068494:CDS |
| TCTGTGATGTTGAGAGGAGA+AGG | 0.613626 | 4.2:-58282345 | MS.gene068494:CDS |
| GCGTGGGATGAACTACTCGT+AGG | 0.615064 | 4.2:-58282292 | MS.gene068494:CDS |
| AAATTACTTTCAGGCGACCA+GGG | 0.615616 | 4.2:-58281618 | MS.gene068494:CDS |
| CTGTCGGGAAACTGGCCTCG+TGG | 0.626954 | 4.2:-58282322 | MS.gene068494:CDS |
| CTGCATGTTAGCGAACTGCT+GGG | 0.629720 | 4.2:+58281703 | None:intergenic |
| AACCTGTTGTGTGAGAATGC+GGG | 0.634987 | 4.2:-58281989 | MS.gene068494:intron |
| CCAAAACACGGTTAATCTCG+CGG | 0.634991 | 4.2:+58282386 | None:intergenic |
| GCGAACTGCTGGGAGAAACG+TGG | 0.648605 | 4.2:+58281713 | None:intergenic |
| TTTGGGTTTACCTGTACCGG+CGG | 0.666169 | 4.2:-58282368 | MS.gene068494:CDS |
| AATCTCTCAAAAGAATAACC+CGG | 0.669209 | 4.2:+58281662 | None:intergenic |
| AACTGCTGGGAGAAACGTGG+AGG | 0.680530 | 4.2:+58281716 | None:intergenic |
| AAAACACGGTTAATCTCGCG+GGG | 0.682951 | 4.2:+58282388 | None:intergenic |
| TCCCACGCCTCTTGACCACG+AGG | 0.701146 | 4.2:+58282307 | None:intergenic |
| AGCTATGTGTCCAAGGTTAG+GGG | 0.719224 | 4.2:-58282430 | MS.gene068494:CDS |
| GTACAGGTAAACCCAAAACA+CGG | 0.723192 | 4.2:+58282374 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATGTCATTAATATTGT+AGG | + | chr4.2:58281932-58281951 | None:intergenic | 20.0% |
| !! | ATTCATAAAAACAATGCTTT+GGG | - | chr4.2:58281949-58281968 | MS.gene068494:intron | 20.0% |
| ! | ATATTTATACTTCGGCAAAT+TGG | - | chr4.2:58282205-58282224 | MS.gene068494:intron | 25.0% |
| ! | GATTCATAAAAACAATGCTT+TGG | - | chr4.2:58281948-58281967 | MS.gene068494:intron | 25.0% |
| ! | TAACATGCAAAATTACTTTC+AGG | - | chr4.2:58282350-58282369 | MS.gene068494:CDS | 25.0% |
| ! | TGCCGAAGTATAAATATATT+CGG | + | chr4.2:58282202-58282221 | None:intergenic | 25.0% |
| AATCTCTCAAAAGAATAACC+CGG | + | chr4.2:58282318-58282337 | None:intergenic | 30.0% | |
| GGCCGAATATATTTATACTT+CGG | - | chr4.2:58282197-58282216 | MS.gene068494:intron | 30.0% | |
| GTTCAGAAAACAACACTAAT+AGG | + | chr4.2:58281879-58281898 | None:intergenic | 30.0% | |
| !! | CTACGATTTTGGTGAAAATA+TGG | - | chr4.2:58282419-58282438 | MS.gene068494:CDS | 30.0% |
| !! | GGTTATTCTTTTGAGAGATT+TGG | - | chr4.2:58282318-58282337 | MS.gene068494:CDS | 30.0% |
| !!! | ATTAGTGTTGTTTTCTGAAC+AGG | - | chr4.2:58281879-58281898 | MS.gene068494:intron | 30.0% |
| CAGTAGTATCAATCCTTTGA+GGG | + | chr4.2:58281759-58281778 | None:intergenic | 35.0% | |
| GAGTAACAAATCGATAGCAA+TGG | - | chr4.2:58281489-58281508 | MS.gene068494:CDS | 35.0% | |
| TAAATATATTCGGCCAATGC+CGG | + | chr4.2:58282192-58282211 | None:intergenic | 35.0% | |
| TCAGTAGTATCAATCCTTTG+AGG | + | chr4.2:58281760-58281779 | None:intergenic | 35.0% | |
| TTATACTTCGGCAAATTGGA+TGG | - | chr4.2:58282209-58282228 | MS.gene068494:intron | 35.0% | |
| ! | ATTGAGGAAGACTACGATTT+TGG | - | chr4.2:58282408-58282427 | MS.gene068494:CDS | 35.0% |
| !! | GGTTGATGAAAGAAGGTAAA+GGG | - | chr4.2:58281707-58281726 | MS.gene068494:CDS | 35.0% |
| AAAATTACTTTCAGGCGACC+AGG | - | chr4.2:58282358-58282377 | MS.gene068494:CDS | 40.0% | |
| AAATTACTTTCAGGCGACCA+GGG | - | chr4.2:58282359-58282378 | MS.gene068494:CDS | 40.0% | |
| AAGCTATGTGTCCAAGGTTA+GGG | - | chr4.2:58281546-58281565 | MS.gene068494:CDS | 40.0% | |
| ACATGCAGATACAGTACAAG+AGG | - | chr4.2:58282289-58282308 | MS.gene068494:CDS | 40.0% | |
| ATAGGAGGATATTCAGCTTC+TGG | + | chr4.2:58282165-58282184 | None:intergenic | 40.0% | |
| ATCCAACAAACAACCCTCAA+AGG | - | chr4.2:58281743-58281762 | MS.gene068494:CDS | 40.0% | |
| GTACAGGTAAACCCAAAACA+CGG | + | chr4.2:58281606-58281625 | None:intergenic | 40.0% | |
| TAACCTGTTGTGTGAGAATG+CGG | - | chr4.2:58281987-58282006 | MS.gene068494:intron | 40.0% | |
| TGAATATCCTCCTATGCATC+CGG | - | chr4.2:58282170-58282189 | MS.gene068494:intron | 40.0% | |
| TGATGAAAGAAGGTAAAGGG+TGG | - | chr4.2:58281710-58281729 | MS.gene068494:CDS | 40.0% | |
| ! | ATCCTTTGAGGGTTGTTTGT+TGG | + | chr4.2:58281748-58281767 | None:intergenic | 40.0% |
| !! | GGGTTGATGAAAGAAGGTAA+AGG | - | chr4.2:58281706-58281725 | MS.gene068494:CDS | 40.0% |
| !!! | TGTTTTGGGTTTACCTGTAC+CGG | - | chr4.2:58281606-58281625 | MS.gene068494:CDS | 40.0% |
| AAAACACGGTTAATCTCGCG+GGG | + | chr4.2:58281592-58281611 | None:intergenic | 45.0% | |
| AACCTGTTGTGTGAGAATGC+GGG | - | chr4.2:58281988-58282007 | MS.gene068494:intron | 45.0% | |
| AAGAAGGTAAAGGGTGGAAG+AGG | - | chr4.2:58281716-58281735 | MS.gene068494:CDS | 45.0% | |
| AATGGCAAGGTTGGAGAAGA+AGG | - | chr4.2:58282071-58282090 | MS.gene068494:CDS | 45.0% | |
| AGCTATGTGTCCAAGGTTAG+GGG | - | chr4.2:58281547-58281566 | MS.gene068494:CDS | 45.0% | |
| ATACAGTACAAGAGGAAGCC+GGG | - | chr4.2:58282297-58282316 | MS.gene068494:CDS | 45.0% | |
| CAAAACACGGTTAATCTCGC+GGG | + | chr4.2:58281593-58281612 | None:intergenic | 45.0% | |
| CAACCTTGCCATTGTAGACT+CGG | + | chr4.2:58282064-58282083 | None:intergenic | 45.0% | |
| CCAAAACACGGTTAATCTCG+CGG | + | chr4.2:58281594-58281613 | None:intergenic | 45.0% | |
| GAAGCTATGTGTCCAAGGTT+AGG | - | chr4.2:58281545-58281564 | MS.gene068494:CDS | 45.0% | |
| GATACAGTACAAGAGGAAGC+CGG | - | chr4.2:58282296-58282315 | MS.gene068494:CDS | 45.0% | |
| GGAAGAAGTCTGACTGTGAA+GGG | + | chr4.2:58282470-58282489 | None:intergenic | 45.0% | |
| TCTGTGATGTTGAGAGGAGA+AGG | - | chr4.2:58281632-58281651 | MS.gene068494:CDS | 45.0% | |
| TGATAGGCACTTGAGACTTG+AGG | + | chr4.2:58282041-58282060 | None:intergenic | 45.0% | |
| ! | CGCGAGATTAACCGTGTTTT+GGG | - | chr4.2:58281592-58281611 | MS.gene068494:CDS | 45.0% |
| ! | GGACATTCAGATCGACTTAG+AGG | - | chr4.2:58282440-58282459 | MS.gene068494:CDS | 45.0% |
| ! | GTTTTCTGAACAGGAGCAGA+TGG | - | chr4.2:58281888-58281907 | MS.gene068494:intron | 45.0% |
| !! | AGCAGAAGTACTCACAATGG+TGG | + | chr4.2:58281824-58281843 | None:intergenic | 45.0% |
| !! | AGCAGCAGAAGTACTCACAA+TGG | + | chr4.2:58281827-58281846 | None:intergenic | 45.0% |
| !! | CTCGTAGGGTTGATGAAAGA+AGG | - | chr4.2:58281700-58281719 | MS.gene068494:CDS | 45.0% |
| AATGCAGTCTGTGAGAGAGC+TGG | - | chr4.2:58281523-58281542 | MS.gene068494:CDS | 50.0% | |
| ACAGTCAGACTTCTTCCCTC+AGG | - | chr4.2:58282473-58282492 | MS.gene068494:CDS | 50.0% | |
| AGCTGGAAGCTATGTGTCCA+AGG | - | chr4.2:58281540-58281559 | MS.gene068494:CDS | 50.0% | |
| CAGACTTCTTCCCTCAGGAT+GGG | - | chr4.2:58282478-58282497 | MS.gene068494:CDS | 50.0% | |
| CGAGTCTACAATGGCAAGGT+TGG | - | chr4.2:58282062-58282081 | MS.gene068494:CDS | 50.0% | |
| CGTGGGATGAACTACTCGTA+GGG | - | chr4.2:58281686-58281705 | MS.gene068494:CDS | 50.0% | |
| CTGCATGTTAGCGAACTGCT+GGG | + | chr4.2:58282277-58282296 | None:intergenic | 50.0% | |
| GAACAGGAGCAGATGGATGT+AGG | - | chr4.2:58281895-58281914 | MS.gene068494:intron | 50.0% | |
| GACTTGAGGAGTAAGTCTCC+CGG | + | chr4.2:58282027-58282046 | None:intergenic | 50.0% | |
| GATCCTCTTACCCCTAACCT+TGG | + | chr4.2:58281560-58281579 | None:intergenic | 50.0% | |
| GCAGAGAGAGAAGGAGATTG+AGG | - | chr4.2:58282392-58282411 | MS.gene068494:CDS | 50.0% | |
| GCCTATCACCGAGTCTACAA+TGG | - | chr4.2:58282053-58282072 | MS.gene068494:CDS | 50.0% | |
| GGAGGATATTCAGCTTCTGG+TGG | + | chr4.2:58282162-58282181 | None:intergenic | 50.0% | |
| GGGAAGAAGTCTGACTGTGA+AGG | + | chr4.2:58282471-58282490 | None:intergenic | 50.0% | |
| TCACCGAGTCTACAATGGCA+AGG | - | chr4.2:58282058-58282077 | MS.gene068494:CDS | 50.0% | |
| TCAGACTTCTTCCCTCAGGA+TGG | - | chr4.2:58282477-58282496 | MS.gene068494:CDS | 50.0% | |
| TCTGCATGTTAGCGAACTGC+TGG | + | chr4.2:58282278-58282297 | None:intergenic | 50.0% | |
| TGCTTCCAATACCGAGAGCA+TGG | - | chr4.2:58281782-58281801 | MS.gene068494:CDS | 50.0% | |
| TGTCCAAGGTTAGGGGTAAG+AGG | - | chr4.2:58281554-58281573 | MS.gene068494:CDS | 50.0% | |
| TGTGAGTACTTCTGCTGCTG+CGG | - | chr4.2:58281828-58281847 | MS.gene068494:intron | 50.0% | |
| TGTTGAGAGGAGAAGGCTGT+CGG | - | chr4.2:58281639-58281658 | MS.gene068494:CDS | 50.0% | |
| ! | CCGCGAGATTAACCGTGTTT+TGG | - | chr4.2:58281591-58281610 | MS.gene068494:CDS | 50.0% |
| ! | GCTTCCAATACCGAGAGCAT+GGG | - | chr4.2:58281783-58281802 | MS.gene068494:CDS | 50.0% |
| ! | TTTGGGTTTACCTGTACCGG+CGG | - | chr4.2:58281609-58281628 | MS.gene068494:CDS | 50.0% |
| !! | GCCATTGTAGACTCGGTGAT+AGG | + | chr4.2:58282057-58282076 | None:intergenic | 50.0% |
| AACTGCTGGGAGAAACGTGG+AGG | + | chr4.2:58282264-58282283 | None:intergenic | 55.0% | |
| ATGAACGACGCCCATGCTCT+CGG | + | chr4.2:58281796-58281815 | None:intergenic | 55.0% | |
| CACCCGCATTCTCACACAAC+AGG | + | chr4.2:58281993-58282012 | None:intergenic | 55.0% | |
| CTCTCAACATCACAGACCGC+CGG | + | chr4.2:58281628-58281647 | None:intergenic | 55.0% | |
| GAGAGCTGAGCAGAGAGAGA+AGG | - | chr4.2:58282383-58282402 | MS.gene068494:CDS | 55.0% | |
| GCGTGGGATGAACTACTCGT+AGG | - | chr4.2:58281685-58281704 | MS.gene068494:CDS | 55.0% | |
| GTTGAGAGGAGAAGGCTGTC+GGG | - | chr4.2:58281640-58281659 | MS.gene068494:CDS | 55.0% | |
| TCCTCCTATGCATCCGGCAT+TGG | - | chr4.2:58282176-58282195 | MS.gene068494:intron | 55.0% | |
| TGCGGGTGTGTTAGCAGAAC+CGG | - | chr4.2:58282005-58282024 | MS.gene068494:CDS | 55.0% | |
| ! | AAACTGGCCTCGTGGTCAAG+AGG | - | chr4.2:58281663-58281682 | MS.gene068494:CDS | 55.0% |
| ! | ATTCAGCTTCTGGTGGTGCC+TGG | + | chr4.2:58282155-58282174 | None:intergenic | 55.0% |
| ACATCACAGACCGCCGGTAC+AGG | + | chr4.2:58281622-58281641 | None:intergenic | 60.0% | |
| CGGCGGTCTGTGATGTTGAG+AGG | - | chr4.2:58281626-58281645 | MS.gene068494:CDS | 60.0% | |
| GACGCCCATGCTCTCGGTAT+TGG | + | chr4.2:58281790-58281809 | None:intergenic | 60.0% | |
| GCCAATGCCGGATGCATAGG+AGG | + | chr4.2:58282180-58282199 | None:intergenic | 60.0% | |
| GCGAACTGCTGGGAGAAACG+TGG | + | chr4.2:58282267-58282286 | None:intergenic | 60.0% | |
| GCGGGTGTGTTAGCAGAACC+GGG | - | chr4.2:58282006-58282025 | MS.gene068494:CDS | 60.0% | |
| GGAGAAGGCTGTCGGGAAAC+TGG | - | chr4.2:58281647-58281666 | MS.gene068494:CDS | 60.0% | |
| TCGGCCAATGCCGGATGCAT+AGG | + | chr4.2:58282183-58282202 | None:intergenic | 60.0% | |
| TCTCTGCTCAGCTCTCTCCC+TGG | + | chr4.2:58282379-58282398 | None:intergenic | 60.0% | |
| GCAGCACCAAGCACCACCAG+AGG | - | chr4.2:58282113-58282132 | MS.gene068494:intron | 65.0% | |
| GCTCTGGCTGCCCATCCTGA+GGG | + | chr4.2:58282491-58282510 | None:intergenic | 65.0% | |
| TCCCACGCCTCTTGACCACG+AGG | + | chr4.2:58281673-58281692 | None:intergenic | 65.0% | |
| TGCTCTGGCTGCCCATCCTG+AGG | + | chr4.2:58282492-58282511 | None:intergenic | 65.0% | |
| ! | CTGTCGGGAAACTGGCCTCG+TGG | - | chr4.2:58281655-58281674 | MS.gene068494:CDS | 65.0% |
| ! | GCCTCGTGGTCAAGAGGCGT+GGG | - | chr4.2:58281669-58281688 | MS.gene068494:CDS | 65.0% |
| !! | TGGTGCCTGGTGCTGCTGGT+GGG | + | chr4.2:58282142-58282161 | None:intergenic | 65.0% |
| GGCCTCGTGGTCAAGAGGCG+TGG | - | chr4.2:58281668-58281687 | MS.gene068494:CDS | 70.0% | |
| !! | CTGGTGGTGCCTGGTGCTGC+TGG | + | chr4.2:58282146-58282165 | None:intergenic | 70.0% |
| !! | GGTGCCTGGTGCTGCTGGTG+GGG | + | chr4.2:58282141-58282160 | None:intergenic | 70.0% |
| !! | GTGGTGCCTGGTGCTGCTGG+TGG | + | chr4.2:58282143-58282162 | None:intergenic | 70.0% |
| ! | GGGGCGCCTCTGGTGGTGCT+TGG | + | chr4.2:58282122-58282141 | None:intergenic | 75.0% |
| ! | TGCTGCTGGTGGGGCGCCTC+TGG | + | chr4.2:58282132-58282151 | None:intergenic | 75.0% |
| ! | TGCTGGTGGGGCGCCTCTGG+TGG | + | chr4.2:58282129-58282148 | None:intergenic | 75.0% |
| ! | GGCGCCCCACCAGCAGCACC+AGG | - | chr4.2:58282134-58282153 | MS.gene068494:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 58281475 | 58282524 | 58281475 | ID=MS.gene068494 |
| chr4.2 | mRNA | 58281475 | 58282524 | 58281475 | ID=MS.gene068494.t1;Parent=MS.gene068494 |
| chr4.2 | exon | 58282278 | 58282524 | 58282278 | ID=MS.gene068494.t1.exon1;Parent=MS.gene068494.t1 |
| chr4.2 | CDS | 58282278 | 58282524 | 58282278 | ID=cds.MS.gene068494.t1;Parent=MS.gene068494.t1 |
| chr4.2 | exon | 58281990 | 58282115 | 58281990 | ID=MS.gene068494.t1.exon2;Parent=MS.gene068494.t1 |
| chr4.2 | CDS | 58281990 | 58282115 | 58281990 | ID=cds.MS.gene068494.t1;Parent=MS.gene068494.t1 |
| chr4.2 | exon | 58281475 | 58281830 | 58281475 | ID=MS.gene068494.t1.exon3;Parent=MS.gene068494.t1 |
| chr4.2 | CDS | 58281475 | 58281830 | 58281475 | ID=cds.MS.gene068494.t1;Parent=MS.gene068494.t1 |
| Gene Sequence |
| Protein sequence |
