Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068821.t1 | XP_013455414.1 | 83.7 | 441 | 2 | 1 | 1 | 371 | 1 | 441 | 3.20E-189 | 671 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068821.t1 | Q8VYT5 | 47.0 | 419 | 144 | 4 | 23 | 371 | 13 | 423 | 9.6e-86 | 318.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068821.t1 | A0A072UUB0 | 83.7 | 441 | 2 | 1 | 1 | 371 | 1 | 441 | 2.3e-189 | 671.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene068821 | 0.801351 | 9.38E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene068821 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene068821 | 0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene050787 | MS.gene068821 | 0.833062 | 6.62E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene068821 | 0.842147 | 3.09E-58 | -1.69E-46 |
| MS.gene052207 | MS.gene068821 | 0.803742 | 3.02E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene068821 | 0.820755 | 5.80E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene068821 | 0.811072 | 8.41E-51 | -1.69E-46 |
| MS.gene054473 | MS.gene068821 | 0.81356 | 2.41E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene068821 | 0.802029 | 6.81E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene068821 | 0.819237 | 1.29E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene068821 | 0.838956 | 2.11E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene068821 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene068821 | 0.807339 | 5.31E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene068821 | 0.803665 | 3.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068821.t1 | MTR_4g036815 | 80.045 | 441 | 18 | 4 | 1 | 371 | 1 | 441 | 0.0 | 645 |
| MS.gene068821.t1 | MTR_3g408430 | 52.861 | 367 | 138 | 11 | 10 | 368 | 7 | 346 | 4.18e-111 | 333 |
| MS.gene068821.t1 | MTR_2g021030 | 28.490 | 351 | 180 | 14 | 82 | 369 | 11 | 353 | 9.01e-16 | 79.0 |
| MS.gene068821.t1 | MTR_2g021030 | 30.412 | 194 | 113 | 9 | 185 | 369 | 251 | 431 | 5.82e-11 | 63.9 |
| MS.gene068821.t1 | MTR_2g021030 | 28.490 | 351 | 180 | 14 | 82 | 369 | 11 | 353 | 1.79e-15 | 78.2 |
| MS.gene068821.t1 | MTR_2g021030 | 30.841 | 214 | 112 | 10 | 185 | 369 | 251 | 457 | 2.03e-12 | 68.9 |
| MS.gene068821.t1 | MTR_1g114610 | 25.589 | 297 | 144 | 11 | 82 | 370 | 20 | 247 | 1.02e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068821.t1 | AT5G07670 | 47.166 | 441 | 145 | 6 | 1 | 371 | 1 | 423 | 6.27e-117 | 348 |
| MS.gene068821.t1 | AT5G51380 | 42.890 | 429 | 168 | 6 | 14 | 371 | 4 | 426 | 3.02e-97 | 297 |
| MS.gene068821.t1 | AT5G51370 | 49.822 | 281 | 131 | 3 | 90 | 369 | 40 | 311 | 6.93e-77 | 241 |
| MS.gene068821.t1 | AT5G51370 | 49.822 | 281 | 131 | 3 | 90 | 369 | 40 | 311 | 5.75e-76 | 241 |
| MS.gene068821.t1 | AT4G15475 | 27.528 | 356 | 177 | 11 | 82 | 369 | 11 | 353 | 1.43e-15 | 78.6 |
| MS.gene068821.t1 | AT4G15475 | 27.273 | 264 | 157 | 10 | 132 | 367 | 199 | 455 | 9.73e-13 | 70.1 |
| MS.gene068821.t1 | AT5G23340 | 27.215 | 316 | 166 | 13 | 82 | 369 | 10 | 289 | 5.88e-14 | 73.2 |
Find 78 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTTCTTCAATGGCGAATT+AGG | 0.133712 | 4.2:+66893220 | None:intergenic |
| TTGAATATGTATATTGATTC+TGG | 0.183844 | 4.2:-66892788 | MS.gene068821:CDS |
| GGTTCGGTTGTTTCGGATAT+TGG | 0.212698 | 4.2:-66892494 | MS.gene068821:CDS |
| TATCTGGTAGATTGATTTAT+AGG | 0.219707 | 4.2:-66892895 | MS.gene068821:CDS |
| ACTTGAACCCTTCTCAAATT+AGG | 0.239059 | 4.2:+66892677 | None:intergenic |
| TGCTAGGGAGATTATTATTC+AGG | 0.242284 | 4.2:-66892135 | MS.gene068821:CDS |
| CCTGTTGAGGTTATTGATAA+TGG | 0.245467 | 4.2:-66892725 | MS.gene068821:CDS |
| GAACACGGTGGTCTGATTTA+TGG | 0.249895 | 4.2:-66893195 | MS.gene068821:CDS |
| GTAAAATTGCTTTACTTAGA+AGG | 0.276039 | 4.2:-66891332 | MS.gene068821:CDS |
| GCAACAACGATTTGGTTTAA+AGG | 0.278209 | 4.2:+66893151 | None:intergenic |
| TTCACATTTCTCTGTGAATC+TGG | 0.289076 | 4.2:+66892998 | None:intergenic |
| AATCATGTTGATTTGATTCA+TGG | 0.312777 | 4.2:-66892860 | MS.gene068821:CDS |
| GGCGAATTAGGGTTAGGGTT+AGG | 0.312829 | 4.2:+66893232 | None:intergenic |
| TTTGATGGGATTAAGGCTAT+TGG | 0.316937 | 4.2:-66892404 | MS.gene068821:CDS |
| GCGAATTAGGGTTAGGGTTA+GGG | 0.322778 | 4.2:+66893233 | None:intergenic |
| CTGTTGAGGTTATTGATAAT+GGG | 0.336909 | 4.2:-66892724 | MS.gene068821:CDS |
| TCGGCTTTGCAACTGTTTGC+AGG | 0.351431 | 4.2:-66892085 | MS.gene068821:intron |
| GTGTTCTACATTGCAGGAAT+TGG | 0.354359 | 4.2:-66892612 | MS.gene068821:CDS |
| GTTTCTTCAATGGCGAATTA+GGG | 0.356220 | 4.2:+66893221 | None:intergenic |
| TGAAATGGGTTTGTTAAGTT+TGG | 0.356585 | 4.2:-66892642 | MS.gene068821:CDS |
| GGGTTAGTTGCTTTAGCTAA+TGG | 0.358130 | 4.2:-66892704 | MS.gene068821:CDS |
| GATCGATTCGGATTCGTGAT+TGG | 0.364905 | 4.2:-66892928 | MS.gene068821:CDS |
| TTGCAGCAGCAACAACGATT+TGG | 0.372725 | 4.2:+66893143 | None:intergenic |
| AGATTATTATTCAGGATTGC+TGG | 0.374839 | 4.2:-66892127 | MS.gene068821:CDS |
| GATTGCTGGGGATTTGATAA+TGG | 0.380312 | 4.2:-66892113 | MS.gene068821:CDS |
| TTGTGAAGCTTGAGCTTTGT+GGG | 0.380521 | 4.2:-66892439 | MS.gene068821:CDS |
| ACAGAGAAATGTGAATTCAT+TGG | 0.382696 | 4.2:-66892990 | MS.gene068821:CDS |
| TTCAATGGCGAATTAGGGTT+AGG | 0.387616 | 4.2:+66893226 | None:intergenic |
| ATTCTGGGTCGACGCCGAAT+TGG | 0.388133 | 4.2:-66892772 | MS.gene068821:CDS |
| TTGAGAAGGGTTCAAGTGAT+TGG | 0.391585 | 4.2:-66892671 | MS.gene068821:CDS |
| TTGATGGGATTAAGGCTATT+GGG | 0.396993 | 4.2:-66892403 | MS.gene068821:CDS |
| TTTCTGTTTGCAGGGTTGCT+AGG | 0.398905 | 4.2:-66892151 | MS.gene068821:intron |
| GTGTAGTGATAATGTGTTAA+GGG | 0.403587 | 4.2:-66892579 | MS.gene068821:CDS |
| TGAAGAGTGTTCTACATTGC+AGG | 0.404045 | 4.2:-66892618 | MS.gene068821:CDS |
| TTGGTTTAAAGGCTTTGATT+TGG | 0.408136 | 4.2:+66893162 | None:intergenic |
| ATTGCTAACAACAGAAGGTT+TGG | 0.408544 | 4.2:-66891303 | MS.gene068821:CDS |
| TGAATATGTATATTGATTCT+GGG | 0.409312 | 4.2:-66892787 | MS.gene068821:CDS |
| TTCTGTTTGCAGGGTTGCTA+GGG | 0.414617 | 4.2:-66892150 | MS.gene068821:intron |
| GGATTTGATAATGGCATGTT+CGG | 0.419974 | 4.2:-66892104 | MS.gene068821:CDS |
| GTTGAATTTACAAGGTCGTT+TGG | 0.420107 | 4.2:-66892954 | MS.gene068821:CDS |
| CTTGTGAAGCTTGAGCTTTG+TGG | 0.422001 | 4.2:-66892440 | MS.gene068821:CDS |
| CGTGTTCCTAGTTTCTTCAA+TGG | 0.432750 | 4.2:+66893211 | None:intergenic |
| TCCTCACAATTAAACCAATT+CGG | 0.433785 | 4.2:+66892758 | None:intergenic |
| GAATTTCATCAGATAACAAA+AGG | 0.435440 | 4.2:+66893044 | None:intergenic |
| AGTGATTGGTGCTAGTGAAA+TGG | 0.438381 | 4.2:-66892657 | MS.gene068821:CDS |
| GTCGTTTGGTTCGATCGATT+CGG | 0.438610 | 4.2:-66892940 | MS.gene068821:CDS |
| AGTGTAGTGATAATGTGTTA+AGG | 0.449338 | 4.2:-66892580 | MS.gene068821:CDS |
| CCATTATCAATAACCTCAAC+AGG | 0.455104 | 4.2:+66892725 | None:intergenic |
| TGGAGTCTGTAATACATTCA+TGG | 0.461431 | 4.2:-66891283 | MS.gene068821:CDS |
| GATTATTATTCAGGATTGCT+GGG | 0.464395 | 4.2:-66892126 | MS.gene068821:CDS |
| AAATCAACATGATTAAGATT+AGG | 0.469235 | 4.2:+66892869 | None:intergenic |
| GTGATTGGTGCTAGTGAAAT+GGG | 0.480614 | 4.2:-66892656 | MS.gene068821:CDS |
| GCTTACATGAGACTACTCTA+AGG | 0.483154 | 4.2:+66891246 | None:intergenic |
| ATCATGTTGATTTGATTCAT+GGG | 0.489312 | 4.2:-66892859 | MS.gene068821:CDS |
| TCAATGGCGAATTAGGGTTA+GGG | 0.492554 | 4.2:+66893227 | None:intergenic |
| ATTCATTGGTTTGTAAAAGA+TGG | 0.495844 | 4.2:-66892976 | MS.gene068821:CDS |
| TCTCTGTGAATCTGGAAGCT+TGG | 0.498971 | 4.2:+66893006 | None:intergenic |
| AAAAGATGGTTGAATTTACA+AGG | 0.506141 | 4.2:-66892962 | MS.gene068821:CDS |
| GGAGAATATGCTTCCTGTTG+AGG | 0.516115 | 4.2:-66892738 | MS.gene068821:CDS |
| AAATTGGTTGGGAATGTTGA+GGG | 0.518791 | 4.2:-66892524 | MS.gene068821:CDS |
| GCCGAATTGGTTTAATTGTG+AGG | 0.522553 | 4.2:-66892759 | MS.gene068821:CDS |
| CTTGAGCTTTGTGGGTGTGA+AGG | 0.531367 | 4.2:-66892431 | MS.gene068821:CDS |
| ATGGTTGTCCTAATTTGAGA+AGG | 0.537606 | 4.2:-66892685 | MS.gene068821:CDS |
| TGGGAAGTGTTGTCAGATGT+TGG | 0.541636 | 4.2:-66892384 | MS.gene068821:CDS |
| TGTAGTGATAATGTGTTAAG+GGG | 0.549508 | 4.2:-66892578 | MS.gene068821:CDS |
| TTGAGCTTTGTGGGTGTGAA+GGG | 0.551393 | 4.2:-66892430 | MS.gene068821:CDS |
| TGCTCATTGCTAACAACAGA+AGG | 0.553995 | 4.2:-66891308 | MS.gene068821:CDS |
| TGGTTGTCCTAATTTGAGAA+GGG | 0.574459 | 4.2:-66892684 | MS.gene068821:CDS |
| AATTCGCCATTGAAGAAACT+AGG | 0.585056 | 4.2:-66893217 | MS.gene068821:CDS |
| AATTTCATCAGATAACAAAA+GGG | 0.589426 | 4.2:+66893045 | None:intergenic |
| GTCTGTAATACATTCATGGA+AGG | 0.593439 | 4.2:-66891279 | MS.gene068821:CDS |
| GAAATTGGTTGGGAATGTTG+AGG | 0.606598 | 4.2:-66892525 | MS.gene068821:CDS |
| AAATTAGGGTTTGATTTGCG+AGG | 0.625332 | 4.2:+66893094 | None:intergenic |
| ATTATTATTCAGGATTGCTG+GGG | 0.650156 | 4.2:-66892125 | MS.gene068821:CDS |
| GTAGTGATAATGTGTTAAGG+GGG | 0.652549 | 4.2:-66892577 | MS.gene068821:CDS |
| CATTGAAGAAACTAGGAACA+CGG | 0.661833 | 4.2:-66893210 | MS.gene068821:CDS |
| GAAGTGTTGTCAGATGTTGG+AGG | 0.680445 | 4.2:-66892381 | MS.gene068821:CDS |
| TGAAGAAACTAGGAACACGG+TGG | 0.807458 | 4.2:-66893207 | MS.gene068821:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAACATGATTAAGATT+AGG | + | chr4.2:66891666-66891685 | None:intergenic | 20.0% |
| !! | AATTTCATCAGATAACAAAA+GGG | + | chr4.2:66891490-66891509 | None:intergenic | 20.0% |
| !! | GAAAAATTCTATTGTGTAAT+TGG | - | chr4.2:66892778-66892797 | MS.gene068821:CDS | 20.0% |
| !! | TGATCAATGATTGAAAAATT+GGG | + | chr4.2:66891465-66891484 | None:intergenic | 20.0% |
| !! | TTGATCAATGATTGAAAAAT+TGG | + | chr4.2:66891466-66891485 | None:intergenic | 20.0% |
| !!! | AGTAATTTTTTCTTTCAGTA+TGG | - | chr4.2:66892870-66892889 | MS.gene068821:CDS | 20.0% |
| !!! | TGAATATGTATATTGATTCT+GGG | - | chr4.2:66891745-66891764 | MS.gene068821:intron | 20.0% |
| !!! | TTGAATATGTATATTGATTC+TGG | - | chr4.2:66891744-66891763 | MS.gene068821:intron | 20.0% |
| ! | AAAAGATGGTTGAATTTACA+AGG | - | chr4.2:66891570-66891589 | MS.gene068821:intron | 25.0% |
| ! | ATTGAAAAATTGGGGAAATT+AGG | + | chr4.2:66891456-66891475 | None:intergenic | 25.0% |
| ! | CTCTAATCATAGATGTATAT+TGG | - | chr4.2:66892816-66892835 | MS.gene068821:CDS | 25.0% |
| ! | GAATTTCATCAGATAACAAA+AGG | + | chr4.2:66891491-66891510 | None:intergenic | 25.0% |
| ! | GATCAATGATTGAAAAATTG+GGG | + | chr4.2:66891464-66891483 | None:intergenic | 25.0% |
| ! | GTAAAATTGCTTTACTTAGA+AGG | - | chr4.2:66893200-66893219 | MS.gene068821:CDS | 25.0% |
| ! | GTTACTTCTATATGTCTATA+TGG | + | chr4.2:66893122-66893141 | None:intergenic | 25.0% |
| ! | TTGAAAAATTGGGGAAATTA+GGG | + | chr4.2:66891455-66891474 | None:intergenic | 25.0% |
| !! | CATAACACAAATTAGTTTAG+AGG | - | chr4.2:66892722-66892741 | MS.gene068821:CDS | 25.0% |
| !! | TATCTGGTAGATTGATTTAT+AGG | - | chr4.2:66891637-66891656 | MS.gene068821:intron | 25.0% |
| !!! | AATCATGTTGATTTGATTCA+TGG | - | chr4.2:66891672-66891691 | MS.gene068821:intron | 25.0% |
| !!! | ATCATGTTGATTTGATTCAT+GGG | - | chr4.2:66891673-66891692 | MS.gene068821:intron | 25.0% |
| !!! | ATTCATTGGTTTGTAAAAGA+TGG | - | chr4.2:66891556-66891575 | MS.gene068821:intron | 25.0% |
| !!! | ATTTTTTCTTTCAGTATGGT+TGG | - | chr4.2:66892874-66892893 | MS.gene068821:CDS | 25.0% |
| !!! | GAATTTGCAGATTTTGAAAT+TGG | - | chr4.2:66891992-66892011 | MS.gene068821:intron | 25.0% |
| !!! | TAAGAAGATTGATTTGAATC+CGG | - | chr4.2:66892265-66892284 | MS.gene068821:intron | 25.0% |
| !!! | TCATATTTTAACTTACCTCT+CGG | - | chr4.2:66892699-66892718 | MS.gene068821:CDS | 25.0% |
| !!! | TTTTGTGTATTGTTTGAAGT+TGG | - | chr4.2:66893072-66893091 | MS.gene068821:CDS | 25.0% |
| AACCTTAAGTCTTAAGTTAG+AGG | + | chr4.2:66892944-66892963 | None:intergenic | 30.0% | |
| ACAGAGAAATGTGAATTCAT+TGG | - | chr4.2:66891542-66891561 | MS.gene068821:intron | 30.0% | |
| AGATTATTATTCAGGATTGC+TGG | - | chr4.2:66892405-66892424 | MS.gene068821:CDS | 30.0% | |
| ATAGATGTATATTGGCAATC+TGG | - | chr4.2:66892824-66892843 | MS.gene068821:CDS | 30.0% | |
| ATTATTATTCAGGATTGCTG+GGG | - | chr4.2:66892407-66892426 | MS.gene068821:CDS | 30.0% | |
| CTTGTTGCAATATTGGAATA+AGG | + | chr4.2:66892995-66893014 | None:intergenic | 30.0% | |
| GATTAGAGACATTTCAACAT+TGG | + | chr4.2:66892804-66892823 | None:intergenic | 30.0% | |
| GATTATTATTCAGGATTGCT+GGG | - | chr4.2:66892406-66892425 | MS.gene068821:CDS | 30.0% | |
| GCAATATTGGAATAAGGAAA+AGG | + | chr4.2:66892989-66893008 | None:intergenic | 30.0% | |
| TCCTCACAATTAAACCAATT+CGG | + | chr4.2:66891777-66891796 | None:intergenic | 30.0% | |
| ! | ACCAAATTTAACGCTTTAGA+TGG | + | chr4.2:66892638-66892657 | None:intergenic | 30.0% |
| ! | AGTGTAGTGATAATGTGTTA+AGG | - | chr4.2:66891952-66891971 | MS.gene068821:intron | 30.0% |
| ! | ATTGATTGCTGTTCTATTTC+AGG | - | chr4.2:66893174-66893193 | MS.gene068821:CDS | 30.0% |
| ! | CTGTTGAGGTTATTGATAAT+GGG | - | chr4.2:66891808-66891827 | MS.gene068821:intron | 30.0% |
| ! | GTGTAGTGATAATGTGTTAA+GGG | - | chr4.2:66891953-66891972 | MS.gene068821:intron | 30.0% |
| ! | TCCATCTAAAGCGTTAAATT+TGG | - | chr4.2:66892634-66892653 | MS.gene068821:CDS | 30.0% |
| ! | TCTAAAGCGTTAAATTTGGT+CGG | - | chr4.2:66892638-66892657 | MS.gene068821:CDS | 30.0% |
| ! | TGTAGTGATAATGTGTTAAG+GGG | - | chr4.2:66891954-66891973 | MS.gene068821:intron | 30.0% |
| ! | TTGGTTTAAAGGCTTTGATT+TGG | + | chr4.2:66891373-66891392 | None:intergenic | 30.0% |
| !! | AAGAAGATTGATTTGAATCC+GGG | - | chr4.2:66892266-66892285 | MS.gene068821:intron | 30.0% |
| !! | CTATCAACTTGTTGCAATAT+TGG | + | chr4.2:66893002-66893021 | None:intergenic | 30.0% |
| !! | TGAAATGGGTTTGTTAAGTT+TGG | - | chr4.2:66891890-66891909 | MS.gene068821:intron | 30.0% |
| !!! | ATTTTATGGTTCGGTTGTTT+CGG | - | chr4.2:66892031-66892050 | MS.gene068821:intron | 30.0% |
| !!! | GATTGGAACTTTGTTTTATC+TGG | - | chr4.2:66891621-66891640 | MS.gene068821:intron | 30.0% |
| !!! | TGCAGATTTTGAAATTGGTT+GGG | - | chr4.2:66891997-66892016 | MS.gene068821:intron | 30.0% |
| !!! | TTGCAGATTTTGAAATTGGT+TGG | - | chr4.2:66891996-66892015 | MS.gene068821:intron | 30.0% |
| AAATTGGTTGGGAATGTTGA+GGG | - | chr4.2:66892008-66892027 | MS.gene068821:intron | 35.0% | |
| AATTCAACACATAGTATCCC+AGG | + | chr4.2:66892756-66892775 | None:intergenic | 35.0% | |
| AATTCGCCATTGAAGAAACT+AGG | - | chr4.2:66891315-66891334 | MS.gene068821:CDS | 35.0% | |
| ACTTGAACCCTTCTCAAATT+AGG | + | chr4.2:66891858-66891877 | None:intergenic | 35.0% | |
| AGTTGACATTGTGTGATCAT+AGG | - | chr4.2:66892174-66892193 | MS.gene068821:intron | 35.0% | |
| AGTTTCTTCAATGGCGAATT+AGG | + | chr4.2:66891315-66891334 | None:intergenic | 35.0% | |
| ATGGTTGTCCTAATTTGAGA+AGG | - | chr4.2:66891847-66891866 | MS.gene068821:intron | 35.0% | |
| ATGTATATTGGCAATCTGGT+CGG | - | chr4.2:66892828-66892847 | MS.gene068821:CDS | 35.0% | |
| ATTCAACACATAGTATCCCA+GGG | + | chr4.2:66892755-66892774 | None:intergenic | 35.0% | |
| ATTGCTAACAACAGAAGGTT+TGG | - | chr4.2:66893229-66893248 | MS.gene068821:CDS | 35.0% | |
| CACAAATTAGTTCATCACCA+GGG | + | chr4.2:66892678-66892697 | None:intergenic | 35.0% | |
| CACCTCTAACTTAAGACTTA+AGG | - | chr4.2:66892939-66892958 | MS.gene068821:CDS | 35.0% | |
| CATTGAAGAAACTAGGAACA+CGG | - | chr4.2:66891322-66891341 | MS.gene068821:CDS | 35.0% | |
| CCATTATCAATAACCTCAAC+AGG | + | chr4.2:66891810-66891829 | None:intergenic | 35.0% | |
| CCTGTTGAGGTTATTGATAA+TGG | - | chr4.2:66891807-66891826 | MS.gene068821:intron | 35.0% | |
| GTCTGTAATACATTCATGGA+AGG | - | chr4.2:66893253-66893272 | MS.gene068821:CDS | 35.0% | |
| GTTGAATTTACAAGGTCGTT+TGG | - | chr4.2:66891578-66891597 | MS.gene068821:intron | 35.0% | |
| GTTTCTTCAATGGCGAATTA+GGG | + | chr4.2:66891314-66891333 | None:intergenic | 35.0% | |
| TGCTAGGGAGATTATTATTC+AGG | - | chr4.2:66892397-66892416 | MS.gene068821:CDS | 35.0% | |
| TGGAGTCTGTAATACATTCA+TGG | - | chr4.2:66893249-66893268 | MS.gene068821:CDS | 35.0% | |
| TGGTTGTCCTAATTTGAGAA+GGG | - | chr4.2:66891848-66891867 | MS.gene068821:intron | 35.0% | |
| TTCACATTTCTCTGTGAATC+TGG | + | chr4.2:66891537-66891556 | None:intergenic | 35.0% | |
| TTCTTTCAGTATGGTTGGAA+TGG | - | chr4.2:66892879-66892898 | MS.gene068821:CDS | 35.0% | |
| TTGATGGGATTAAGGCTATT+GGG | - | chr4.2:66892129-66892148 | MS.gene068821:CDS | 35.0% | |
| TTTCCTGTTTGATTGACGAT+TGG | - | chr4.2:66892546-66892565 | MS.gene068821:CDS | 35.0% | |
| TTTGATGGGATTAAGGCTAT+TGG | - | chr4.2:66892128-66892147 | MS.gene068821:CDS | 35.0% | |
| ! | GCTATACTGTCTAGAACTTA+TGG | - | chr4.2:66892517-66892536 | MS.gene068821:CDS | 35.0% |
| ! | GTAGTGATAATGTGTTAAGG+GGG | - | chr4.2:66891955-66891974 | MS.gene068821:intron | 35.0% |
| ! | TAAGGTTGTTGACTAGAACA+AGG | - | chr4.2:66892957-66892976 | MS.gene068821:CDS | 35.0% |
| ! | TGTTGAGGGATTTTATGGTT+CGG | - | chr4.2:66892022-66892041 | MS.gene068821:intron | 35.0% |
| !! | AAATTAGGGTTTGATTTGCG+AGG | + | chr4.2:66891441-66891460 | None:intergenic | 35.0% |
| !! | ATGGCTTTGTCGACTAAAAT+TGG | + | chr4.2:66893103-66893122 | None:intergenic | 35.0% |
| !! | ATTTGCAAAAGTGTCAGTTG+CGG | - | chr4.2:66892333-66892352 | MS.gene068821:intron | 35.0% |
| !! | GCAACAACGATTTGGTTTAA+AGG | + | chr4.2:66891384-66891403 | None:intergenic | 35.0% |
| !! | GGATTTGATAATGGCATGTT+CGG | - | chr4.2:66892428-66892447 | MS.gene068821:CDS | 35.0% |
| !!! | TTTTAGCTCAAGGTTGTAAG+AGG | - | chr4.2:66892069-66892088 | MS.gene068821:intron | 35.0% |
| AACTAACGCTCAACACATCA+TGG | + | chr4.2:66892604-66892623 | None:intergenic | 40.0% | |
| CCACAAATTAGTTCATCACC+AGG | + | chr4.2:66892679-66892698 | None:intergenic | 40.0% | |
| CGTGTTCCTAGTTTCTTCAA+TGG | + | chr4.2:66891324-66891343 | None:intergenic | 40.0% | |
| GAAATTGGTTGGGAATGTTG+AGG | - | chr4.2:66892007-66892026 | MS.gene068821:intron | 40.0% | |
| GACATTGTGTGATCATAGGA+TGG | - | chr4.2:66892178-66892197 | MS.gene068821:intron | 40.0% | |
| GATTGCTGGGGATTTGATAA+TGG | - | chr4.2:66892419-66892438 | MS.gene068821:CDS | 40.0% | |
| GTGAGAATTTGAAGACGTTG+AGG | - | chr4.2:66892231-66892250 | MS.gene068821:intron | 40.0% | |
| GTGTTCTACATTGCAGGAAT+TGG | - | chr4.2:66891920-66891939 | MS.gene068821:intron | 40.0% | |
| TAATGTGTTAAGGGGGATTG+CGG | - | chr4.2:66891962-66891981 | MS.gene068821:intron | 40.0% | |
| TCAATGGCGAATTAGGGTTA+GGG | + | chr4.2:66891308-66891327 | None:intergenic | 40.0% | |
| TGCTCATTGCTAACAACAGA+AGG | - | chr4.2:66893224-66893243 | MS.gene068821:CDS | 40.0% | |
| TGTATATTGGCAATCTGGTC+GGG | - | chr4.2:66892829-66892848 | MS.gene068821:CDS | 40.0% | |
| TGTGATCATAGGATGGATGA+TGG | - | chr4.2:66892185-66892204 | MS.gene068821:intron | 40.0% | |
| TTCAATGGCGAATTAGGGTT+AGG | + | chr4.2:66891309-66891328 | None:intergenic | 40.0% | |
| TTGAGAAGGGTTCAAGTGAT+TGG | - | chr4.2:66891861-66891880 | MS.gene068821:intron | 40.0% | |
| TTGCCAATCGTCAATCAAAC+AGG | + | chr4.2:66892552-66892571 | None:intergenic | 40.0% | |
| ! | CCTGGTGATGAACTAATTTG+TGG | - | chr4.2:66892676-66892695 | MS.gene068821:CDS | 40.0% |
| ! | CTAATTTGTGTTATGCCGAG+AGG | + | chr4.2:66892717-66892736 | None:intergenic | 40.0% |
| ! | GCCGAATTGGTTTAATTGTG+AGG | - | chr4.2:66891773-66891792 | MS.gene068821:intron | 40.0% |
| ! | GGGAATGTTGAGGGATTTTA+TGG | - | chr4.2:66892017-66892036 | MS.gene068821:intron | 40.0% |
| ! | TTGTGAAGCTTGAGCTTTGT+GGG | - | chr4.2:66892093-66892112 | MS.gene068821:CDS | 40.0% |
| !! | AGGGAGTTTTGATGGGATTA+AGG | - | chr4.2:66892121-66892140 | MS.gene068821:CDS | 40.0% |
| !! | AGTGATTGGTGCTAGTGAAA+TGG | - | chr4.2:66891875-66891894 | MS.gene068821:intron | 40.0% |
| !! | ATCATAGGATGGATGATGGA+TGG | - | chr4.2:66892189-66892208 | MS.gene068821:intron | 40.0% |
| !! | GGGTTAGTTGCTTTAGCTAA+TGG | - | chr4.2:66891828-66891847 | MS.gene068821:intron | 40.0% |
| !! | GTGATTGGTGCTAGTGAAAT+GGG | - | chr4.2:66891876-66891895 | MS.gene068821:intron | 40.0% |
| !! | TGAAGAGTGTTCTACATTGC+AGG | - | chr4.2:66891914-66891933 | MS.gene068821:intron | 40.0% |
| !! | TTTGCAAAAGTGTCAGTTGC+GGG | - | chr4.2:66892334-66892353 | MS.gene068821:intron | 40.0% |
| !!! | GGCTTTGTTTTCTGTTTGCA+GGG | - | chr4.2:66892373-66892392 | MS.gene068821:CDS | 40.0% |
| !!! | GGTTTGACGATTTTAGCTCA+AGG | - | chr4.2:66892059-66892078 | MS.gene068821:intron | 40.0% |
| ACACATAGTATCCCAGGGAA+AGG | + | chr4.2:66892750-66892769 | None:intergenic | 45.0% | |
| CACATAGTATCCCAGGGAAA+GGG | + | chr4.2:66892749-66892768 | None:intergenic | 45.0% | |
| CCCAAATACTCATCAAGTCC+CGG | + | chr4.2:66892287-66892306 | None:intergenic | 45.0% | |
| CCGGGACTTGATGAGTATTT+GGG | - | chr4.2:66892284-66892303 | MS.gene068821:intron | 45.0% | |
| CTTGTGAAGCTTGAGCTTTG+TGG | - | chr4.2:66892092-66892111 | MS.gene068821:CDS | 45.0% | |
| GAACACGGTGGTCTGATTTA+TGG | - | chr4.2:66891337-66891356 | MS.gene068821:CDS | 45.0% | |
| GCGAATTAGGGTTAGGGTTA+GGG | + | chr4.2:66891302-66891321 | None:intergenic | 45.0% | |
| GGAGAATATGCTTCCTGTTG+AGG | - | chr4.2:66891794-66891813 | MS.gene068821:intron | 45.0% | |
| GTATATTGGCAATCTGGTCG+GGG | - | chr4.2:66892830-66892849 | MS.gene068821:CDS | 45.0% | |
| TATATTGGCAATCTGGTCGG+GGG | - | chr4.2:66892831-66892850 | MS.gene068821:CDS | 45.0% | |
| TCCGGGACTTGATGAGTATT+TGG | - | chr4.2:66892283-66892302 | MS.gene068821:intron | 45.0% | |
| TCTCTGTGAATCTGGAAGCT+TGG | + | chr4.2:66891529-66891548 | None:intergenic | 45.0% | |
| TGAAGAAACTAGGAACACGG+TGG | - | chr4.2:66891325-66891344 | MS.gene068821:CDS | 45.0% | |
| TTCTGTTTGCAGGGTTGCTA+GGG | - | chr4.2:66892382-66892401 | MS.gene068821:CDS | 45.0% | |
| TTGCAGCAGCAACAACGATT+TGG | + | chr4.2:66891392-66891411 | None:intergenic | 45.0% | |
| TTTCTGTTTGCAGGGTTGCT+AGG | - | chr4.2:66892381-66892400 | MS.gene068821:CDS | 45.0% | |
| ! | GGTTCGGTTGTTTCGGATAT+TGG | - | chr4.2:66892038-66892057 | MS.gene068821:intron | 45.0% |
| ! | GTCGTTTGGTTCGATCGATT+CGG | - | chr4.2:66891592-66891611 | MS.gene068821:intron | 45.0% |
| ! | TTGAGCTTTGTGGGTGTGAA+GGG | - | chr4.2:66892102-66892121 | MS.gene068821:CDS | 45.0% |
| !! | GAAGTGTTGTCAGATGTTGG+AGG | - | chr4.2:66892151-66892170 | MS.gene068821:intron | 45.0% |
| !! | GATCGATTCGGATTCGTGAT+TGG | - | chr4.2:66891604-66891623 | MS.gene068821:intron | 45.0% |
| !! | GGTGTGAAGGGAGTTTTGAT+GGG | - | chr4.2:66892114-66892133 | MS.gene068821:CDS | 45.0% |
| !! | TAGGATGGATGATGGATGGA+TGG | - | chr4.2:66892193-66892212 | MS.gene068821:intron | 45.0% |
| !! | TGGGAAGTGTTGTCAGATGT+TGG | - | chr4.2:66892148-66892167 | MS.gene068821:intron | 45.0% |
| !!! | CGGCTTTGTTTTCTGTTTGC+AGG | - | chr4.2:66892372-66892391 | MS.gene068821:CDS | 45.0% |
| AAATGCAGCCTCTCAAGTGC+AGG | + | chr4.2:66892317-66892336 | None:intergenic | 50.0% | |
| AGTTTAGAGGTCCCTTTCCC+TGG | - | chr4.2:66892735-66892754 | MS.gene068821:CDS | 50.0% | |
| ATATTGGCAATCTGGTCGGG+GGG | - | chr4.2:66892832-66892851 | MS.gene068821:CDS | 50.0% | |
| GGCGAATTAGGGTTAGGGTT+AGG | + | chr4.2:66891303-66891322 | None:intergenic | 50.0% | |
| GTTCTTGTCCTGCACTTGAG+AGG | - | chr4.2:66892306-66892325 | MS.gene068821:intron | 50.0% | |
| GTTTAGAGGTCCCTTTCCCT+GGG | - | chr4.2:66892736-66892755 | MS.gene068821:CDS | 50.0% | |
| TCATCACCAGGGATCGAACT+CGG | + | chr4.2:66892667-66892686 | None:intergenic | 50.0% | |
| TCGGCTTTGCAACTGTTTGC+AGG | - | chr4.2:66892447-66892466 | MS.gene068821:CDS | 50.0% | |
| ! | CTTGAGCTTTGTGGGTGTGA+AGG | - | chr4.2:66892101-66892120 | MS.gene068821:CDS | 50.0% |
| ! | GCGGGATAAGAAGAGTGTGT+CGG | - | chr4.2:66892352-66892371 | MS.gene068821:intron | 50.0% |
| !! | GGGTGTGAAGGGAGTTTTGA+TGG | - | chr4.2:66892113-66892132 | MS.gene068821:CDS | 50.0% |
| ATTCTGGGTCGACGCCGAAT+TGG | - | chr4.2:66891760-66891779 | MS.gene068821:intron | 55.0% | |
| CATCACCAGGGATCGAACTC+GGG | + | chr4.2:66892666-66892685 | None:intergenic | 55.0% | |
| TATTGGCAATCTGGTCGGGG+GGG | - | chr4.2:66892833-66892852 | MS.gene068821:CDS | 55.0% | |
| !! | GGATGATGGATGGATGGCTG+CGG | - | chr4.2:66892199-66892218 | MS.gene068821:intron | 55.0% |
| TAAGGGGGATTGCGGCGTGT+GGG | - | chr4.2:66891970-66891989 | MS.gene068821:intron | 60.0% | |
| TTAAGGGGGATTGCGGCGTG+TGG | - | chr4.2:66891969-66891988 | MS.gene068821:intron | 60.0% | |
| CGGTACCCGAGTTCGATCCC+TGG | - | chr4.2:66892658-66892677 | MS.gene068821:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 66891252 | 66893302 | 66891252 | ID=MS.gene068821 |
| chr4.2 | mRNA | 66891252 | 66893302 | 66891252 | ID=MS.gene068821.t1;Parent=MS.gene068821 |
| chr4.2 | exon | 66892371 | 66893302 | 66892371 | ID=MS.gene068821.t1.exon1;Parent=MS.gene068821.t1 |
| chr4.2 | CDS | 66892371 | 66893302 | 66892371 | ID=cds.MS.gene068821.t1;Parent=MS.gene068821.t1 |
| chr4.2 | exon | 66892086 | 66892160 | 66892086 | ID=MS.gene068821.t1.exon2;Parent=MS.gene068821.t1 |
| chr4.2 | CDS | 66892086 | 66892160 | 66892086 | ID=cds.MS.gene068821.t1;Parent=MS.gene068821.t1 |
| chr4.2 | exon | 66891252 | 66891358 | 66891252 | ID=MS.gene068821.t1.exon3;Parent=MS.gene068821.t1 |
| chr4.2 | CDS | 66891252 | 66891358 | 66891252 | ID=cds.MS.gene068821.t1;Parent=MS.gene068821.t1 |
| Gene Sequence |
| Protein sequence |
