Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069084.t1 | XP_003611971.1 | 98.8 | 171 | 2 | 0 | 1 | 171 | 1 | 171 | 1.00E-89 | 339.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069084.t1 | G7KC97 | 98.8 | 171 | 2 | 0 | 1 | 171 | 1 | 171 | 7.2e-90 | 339.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene069084 | 0.82752 | 1.50E-54 | -1.69E-46 |
| MS.gene049178 | MS.gene069084 | 0.814724 | 1.33E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene069084 | 0.825141 | 5.51E-54 | -1.69E-46 |
| MS.gene049368 | MS.gene069084 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene069084 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene051490 | MS.gene069084 | 0.801067 | 1.07E-48 | -1.69E-46 |
| MS.gene051852 | MS.gene069084 | 0.802391 | 5.74E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene069084 | 0.807176 | 5.75E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene069084 | 0.806139 | 9.51E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene069084 | 0.838437 | 2.88E-57 | -1.69E-46 |
| MS.gene053144 | MS.gene069084 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene069084 | 0.806892 | 6.60E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene069084 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene069084 | 0.831326 | 1.78E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene069084 | 0.827889 | 1.22E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene069084 | 0.819144 | 1.36E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene069084 | 0.805975 | 1.03E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene069084 | 0.807387 | 5.18E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene069084 | 0.814512 | 1.48E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene069084 | 0.810466 | 1.14E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene069084 | 0.815406 | 9.40E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene069084 | 0.812451 | 4.21E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene069084 | 0.830488 | 2.85E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069084.t1 | MTR_5g019900 | 98.830 | 171 | 2 | 0 | 1 | 171 | 1 | 171 | 7.12e-126 | 351 |
| MS.gene069084.t1 | MTR_3g111800 | 67.568 | 111 | 33 | 2 | 26 | 133 | 7 | 117 | 1.15e-46 | 149 |
| MS.gene069084.t1 | MTR_3g111800 | 67.568 | 111 | 33 | 2 | 26 | 133 | 7 | 117 | 1.65e-46 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069084.t1 | AT4G36660 | 70.588 | 170 | 40 | 2 | 1 | 160 | 1 | 170 | 8.94e-79 | 232 |
| MS.gene069084.t1 | AT5G65650 | 69.186 | 172 | 46 | 2 | 1 | 165 | 1 | 172 | 3.06e-76 | 226 |
| MS.gene069084.t1 | AT1G19380 | 54.622 | 119 | 53 | 1 | 30 | 147 | 25 | 143 | 6.20e-37 | 125 |
Find 41 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGAAGGTACAAATTT+TGG | 0.077573 | 5.3:+11361928 | MS.gene069084:CDS |
| TTCCTTTGTCAGCTTGCTTA+AGG | 0.283386 | 5.3:-11365478 | None:intergenic |
| GGATCAGGTTGCCGAGGTTT+TGG | 0.290545 | 5.3:+11362226 | MS.gene069084:CDS |
| AACGTGGATTCAGGTTTGTT+TGG | 0.341765 | 5.3:+11361906 | MS.gene069084:CDS |
| ACCGTTTCTCTTCGTTGGTC+TGG | 0.356252 | 5.3:+11361999 | MS.gene069084:CDS |
| GACGGCAGCGATTAACAAAA+AGG | 0.396473 | 5.3:+11361881 | MS.gene069084:CDS |
| ACATCGAGATCGTCGTGAAT+AGG | 0.397094 | 5.3:-11362056 | None:intergenic |
| CTGGTACCGTTTCTCTTCGT+TGG | 0.412184 | 5.3:+11361994 | MS.gene069084:CDS |
| TTAATCGCTGCCGTCGTCGT+TGG | 0.452555 | 5.3:-11361873 | None:intergenic |
| AGTATCGAGGTCACTGGATA+AGG | 0.466687 | 5.3:-11362033 | None:intergenic |
| AAGGAAAACGAACCGTGGAT+TGG | 0.476537 | 5.3:-11362371 | None:intergenic |
| GATTCAGGTTTGTTTGGAAA+AGG | 0.481721 | 5.3:+11361912 | MS.gene069084:CDS |
| AGAAAGTTGTGAGGCATATG+TGG | 0.488420 | 5.3:+11362181 | MS.gene069084:CDS |
| ACACCAACAGCCGTAGGATC+AGG | 0.511562 | 5.3:+11362211 | MS.gene069084:CDS |
| TGTGTAGGAAATGGAAGAGA+GGG | 0.530993 | 5.3:+11362158 | MS.gene069084:intron |
| CAGGTTTGTTTGGAAAAGGA+AGG | 0.533040 | 5.3:+11361916 | MS.gene069084:CDS |
| CAACCTGATCCTACGGCTGT+TGG | 0.537984 | 5.3:-11362214 | None:intergenic |
| CGAACCGTGGATTGGATAGG+AGG | 0.542124 | 5.3:-11362363 | None:intergenic |
| CGGAAATGAAGGATGACGAT+GGG | 0.550371 | 5.3:+11361847 | None:intergenic |
| ACCAGACCAACGAAGAGAAA+CGG | 0.550644 | 5.3:-11362000 | None:intergenic |
| ACCGTGGATTGGATAGGAGG+TGG | 0.560306 | 5.3:-11362360 | None:intergenic |
| AAACGAACCGTGGATTGGAT+AGG | 0.568958 | 5.3:-11362366 | None:intergenic |
| ACCTCGGCAACCTGATCCTA+CGG | 0.573548 | 5.3:-11362221 | None:intergenic |
| AATAGGAGTATCGAGGTCAC+TGG | 0.574382 | 5.3:-11362039 | None:intergenic |
| GAATTGACTAGTGATGTTCC+TGG | 0.589809 | 5.3:+11362276 | MS.gene069084:CDS |
| AGCCTTAAGCAAGCTGACAA+AGG | 0.595487 | 5.3:+11365476 | MS.gene069084:CDS |
| CATCATATTTCAGAGAGCAC+AGG | 0.597960 | 5.3:+11365442 | MS.gene069084:intron |
| GTGTGTAGGAAATGGAAGAG+AGG | 0.601208 | 5.3:+11362157 | MS.gene069084:intron |
| AAGAGAGGGAGAAAGTTGTG+AGG | 0.610515 | 5.3:+11362172 | MS.gene069084:CDS |
| AGAAACGGTACCAGTAAACA+TGG | 0.615388 | 5.3:-11361985 | None:intergenic |
| GCCGTAGGATCAGGTTGCCG+AGG | 0.615991 | 5.3:+11362220 | MS.gene069084:CDS |
| AAAGCCTCTTGCCAAAACCT+CGG | 0.619602 | 5.3:-11362237 | None:intergenic |
| GAAAGTTGTGAGGCATATGT+GGG | 0.620041 | 5.3:+11362182 | MS.gene069084:CDS |
| TCCACCTCCTATCCAATCCA+CGG | 0.641814 | 5.3:+11362359 | MS.gene069084:CDS |
| TCGGAAATGAAGGATGACGA+TGG | 0.646801 | 5.3:+11361846 | None:intergenic |
| CGATGGGCTTCCAACGACGA+CGG | 0.657116 | 5.3:+11361863 | MS.gene069084:CDS |
| ATAGCATCATCTCTAACACC+AGG | 0.678366 | 5.3:-11362294 | None:intergenic |
| ATGTGTACACCAACAGCCGT+AGG | 0.683663 | 5.3:+11362205 | MS.gene069084:CDS |
| CGTCGTGAATAGGAGTATCG+AGG | 0.701938 | 5.3:-11362046 | None:intergenic |
| AAAAGCGAGAAGCAAAATCG+CGG | 0.727032 | 5.3:-11361958 | None:intergenic |
| ACAAAGGAAAAGAAGCGATG+CGG | 0.741207 | 5.3:+11365492 | MS.gene069084:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTATTTTTAATAAA+GGG | - | chr5.3:11364578-11364597 | None:intergenic | 0.0% |
| !!! | TTTATTTTTATTTTTAATAA+AGG | - | chr5.3:11364579-11364598 | None:intergenic | 0.0% |
| !! | ATAAATCTTTATATGTTTAT+AGG | - | chr5.3:11363021-11363040 | None:intergenic | 10.0% |
| !!! | TTTACAATTTGTATGTTTTT+TGG | + | chr5.3:11363380-11363399 | MS.gene069084:intron | 15.0% |
| !! | AAAATGAGATTAAAGGAAAA+TGG | - | chr5.3:11362093-11362112 | None:intergenic | 20.0% |
| !! | AAGAATCAAAATGAGATTAA+AGG | - | chr5.3:11362100-11362119 | None:intergenic | 20.0% |
| !! | ATAATATTGCACTAGAAATT+TGG | + | chr5.3:11362519-11362538 | MS.gene069084:intron | 20.0% |
| !! | GAAAGACTAATTAAAACAAA+AGG | - | chr5.3:11365072-11365091 | None:intergenic | 20.0% |
| !! | GAACAAAAGATAAATTAAAG+TGG | - | chr5.3:11362752-11362771 | None:intergenic | 20.0% |
| !! | GATATTGTTAGTTAGATAAA+AGG | + | chr5.3:11363871-11363890 | MS.gene069084:intron | 20.0% |
| !! | TAAAATGAATGTTTGAATAG+AGG | - | chr5.3:11364879-11364898 | None:intergenic | 20.0% |
| !! | TAATCTAAATTAACTGAGAA+TGG | - | chr5.3:11365104-11365123 | None:intergenic | 20.0% |
| !! | TATATGTTTATAGGTGTTTA+TGG | - | chr5.3:11363012-11363031 | None:intergenic | 20.0% |
| !! | TCATACTAGAGTATATATTA+TGG | + | chr5.3:11365403-11365422 | MS.gene069084:intron | 20.0% |
| !! | TGTAAGTAAATAGACAAAAA+AGG | - | chr5.3:11363662-11363681 | None:intergenic | 20.0% |
| !!! | AAAAAATCAATTTTAGATGG+AGG | - | chr5.3:11364468-11364487 | None:intergenic | 20.0% |
| !!! | ACTCATTGTTAATTTGTTAT+TGG | + | chr5.3:11362466-11362485 | MS.gene069084:intron | 20.0% |
| !!! | ATCATTTTGGAAACATTTTA+AGG | + | chr5.3:11364958-11364977 | MS.gene069084:intron | 20.0% |
| !!! | ATGTTTAGTTTTGTTTTCTA+AGG | - | chr5.3:11364820-11364839 | None:intergenic | 20.0% |
| !!! | CACAAAAAATCAATTTTAGA+TGG | - | chr5.3:11364471-11364490 | None:intergenic | 20.0% |
| !!! | GTTTATGTCAATGATTTTAA+GGG | + | chr5.3:11364520-11364539 | MS.gene069084:intron | 20.0% |
| !!! | TCATTTTGGAAACATTTTAA+GGG | + | chr5.3:11364959-11364978 | MS.gene069084:intron | 20.0% |
| !!! | TGTTTAGTTTTGTTTTCTAA+GGG | - | chr5.3:11364819-11364838 | None:intergenic | 20.0% |
| !!! | TGTTTATGTCAATGATTTTA+AGG | + | chr5.3:11364519-11364538 | MS.gene069084:intron | 20.0% |
| !!! | TTCATATTTGATAGTTTAAC+TGG | + | chr5.3:11363910-11363929 | MS.gene069084:intron | 20.0% |
| !!! | TTTTGTCAAAAAAGAAATGT+AGG | + | chr5.3:11365200-11365219 | MS.gene069084:intron | 20.0% |
| !!! | TTTTTAAATGTTGTTTCGTT+TGG | + | chr5.3:11362981-11363000 | MS.gene069084:intron | 20.0% |
| ! | AAAAGTTTATAAGTGTGTGT+AGG | - | chr5.3:11363638-11363657 | None:intergenic | 25.0% |
| ! | AAAGTAGAAAGAGATGTTAT+TGG | + | chr5.3:11364993-11365012 | MS.gene069084:intron | 25.0% |
| ! | AACATTAACTAACAAAACCA+TGG | - | chr5.3:11362404-11362423 | None:intergenic | 25.0% |
| ! | AAGTTTAGAAACTATTCTCA+AGG | - | chr5.3:11364712-11364731 | None:intergenic | 25.0% |
| ! | AGTCTTCAAGAAAAATAAAC+TGG | + | chr5.3:11364842-11364861 | MS.gene069084:intron | 25.0% |
| ! | CAATTACATGGTAGAAATAA+TGG | + | chr5.3:11363736-11363755 | MS.gene069084:intron | 25.0% |
| ! | CAGACTAATTTCAACTAATA+CGG | - | chr5.3:11362952-11362971 | None:intergenic | 25.0% |
| ! | GTCTTCAAGAAAAATAAACT+GGG | + | chr5.3:11364843-11364862 | MS.gene069084:intron | 25.0% |
| ! | TATGTTTGCAATTTGCAAAT+GGG | + | chr5.3:11363168-11363187 | MS.gene069084:intron | 25.0% |
| ! | TCCTAAAAGTTTATGCAAAT+TGG | - | chr5.3:11363785-11363804 | None:intergenic | 25.0% |
| ! | TCTAAGCTCAATTATTTGAA+GGG | + | chr5.3:11365270-11365289 | MS.gene069084:intron | 25.0% |
| ! | TGAAATCAGTTTACATTACA+AGG | + | chr5.3:11363459-11363478 | MS.gene069084:intron | 25.0% |
| ! | TTAAGTGAACAAGAATTAGA+AGG | + | chr5.3:11364033-11364052 | MS.gene069084:intron | 25.0% |
| ! | TTCTAAGCTCAATTATTTGA+AGG | + | chr5.3:11365269-11365288 | MS.gene069084:intron | 25.0% |
| ! | TTGAGAATAGTTTCTAAACT+TGG | + | chr5.3:11364711-11364730 | MS.gene069084:intron | 25.0% |
| !! | ATTCAACTTTAAAAGTGATG+TGG | - | chr5.3:11363602-11363621 | None:intergenic | 25.0% |
| !! | CATTATTTAAAGCATTTCCT+GGG | + | chr5.3:11363220-11363239 | MS.gene069084:intron | 25.0% |
| !! | CTTAAAAGTATAGTTAGAGA+GGG | - | chr5.3:11364098-11364117 | None:intergenic | 25.0% |
| !! | TAAACTTGGCATTTTTGTAT+TGG | + | chr5.3:11364725-11364744 | MS.gene069084:intron | 25.0% |
| !! | TCCAATTTGCATAAACTTTT+AGG | + | chr5.3:11363781-11363800 | MS.gene069084:intron | 25.0% |
| !!! | AAAAGGAAGGTACAAATTTT+GGG | + | chr5.3:11361929-11361948 | MS.gene069084:CDS | 25.0% |
| !!! | CATCACTTTTAAAGTTGAAT+TGG | + | chr5.3:11363602-11363621 | MS.gene069084:intron | 25.0% |
| !!! | GATTGGTTTTATTTTGAATG+TGG | + | chr5.3:11363123-11363142 | MS.gene069084:intron | 25.0% |
| !!! | TAAAAGTTGAGCCTTTTTTA+GGG | - | chr5.3:11364402-11364421 | None:intergenic | 25.0% |
| !!! | TCTTTGTTGTTTGCATAATA+CGG | + | chr5.3:11363425-11363444 | MS.gene069084:intron | 25.0% |
| !!! | TTGTTAATTTGTTATTGGTC+TGG | + | chr5.3:11362471-11362490 | MS.gene069084:intron | 25.0% |
| !!! | TTTTTTGTCAAGTCTTTTTG+TGG | - | chr5.3:11362868-11362887 | None:intergenic | 25.0% |
| AAGACTTAATTGAACGCTTA+TGG | - | chr5.3:11362820-11362839 | None:intergenic | 30.0% | |
| AATATGAAGAACATTGCAAC+AGG | - | chr5.3:11363898-11363917 | None:intergenic | 30.0% | |
| AATTGTAAACCAACGAATCT+CGG | - | chr5.3:11363369-11363388 | None:intergenic | 30.0% | |
| ATATGAAGAACATTGCAACA+GGG | - | chr5.3:11363897-11363916 | None:intergenic | 30.0% | |
| ATATTGCTGATCAAACTCAA+TGG | + | chr5.3:11362589-11362608 | MS.gene069084:intron | 30.0% | |
| ATGTTTGCAATTTGCAAATG+GGG | + | chr5.3:11363169-11363188 | MS.gene069084:intron | 30.0% | |
| CTATGTTTGCAATTTGCAAA+TGG | + | chr5.3:11363167-11363186 | MS.gene069084:intron | 30.0% | |
| CTTATGTGAAAAAAACGAGT+TGG | + | chr5.3:11365315-11365334 | MS.gene069084:intron | 30.0% | |
| GAATTTCCTGTACTAAATAG+AGG | - | chr5.3:11364062-11364081 | None:intergenic | 30.0% | |
| GATGCAATCTAGGAATTTAA+AGG | - | chr5.3:11364611-11364630 | None:intergenic | 30.0% | |
| GATTAACAAAAAGGAAAACG+TGG | + | chr5.3:11361890-11361909 | MS.gene069084:CDS | 30.0% | |
| GGAGAAATTTAACTCATGTT+TGG | - | chr5.3:11362847-11362866 | None:intergenic | 30.0% | |
| TAATTGGTGAAGATCCATTA+TGG | + | chr5.3:11364342-11364361 | MS.gene069084:intron | 30.0% | |
| TAGCATCTTGGATCAATTAA+AGG | - | chr5.3:11363998-11364017 | None:intergenic | 30.0% | |
| TATGATGCAGTAAATACATC+AGG | - | chr5.3:11365429-11365448 | None:intergenic | 30.0% | |
| TCTTCTTTCCTTGAATCTTT+GGG | - | chr5.3:11363958-11363977 | None:intergenic | 30.0% | |
| TGTCTATTTACTTACACTGT+TGG | + | chr5.3:11363666-11363685 | MS.gene069084:intron | 30.0% | |
| TTAACTAACAAAACCATGGA+TGG | - | chr5.3:11362400-11362419 | None:intergenic | 30.0% | |
| TTAATTGATCCAAGATGCTA+AGG | + | chr5.3:11363998-11364017 | MS.gene069084:intron | 30.0% | |
| TTACTTGAAATGATGAAGCT+CGG | + | chr5.3:11362442-11362461 | MS.gene069084:intron | 30.0% | |
| TTCTTCTTTCCTTGAATCTT+TGG | - | chr5.3:11363959-11363978 | None:intergenic | 30.0% | |
| ! | AATCAATTTTAGATGGAGGT+TGG | - | chr5.3:11364464-11364483 | None:intergenic | 30.0% |
| ! | AGAAAATACAGGTTCTAGTT+TGG | + | chr5.3:11364375-11364394 | MS.gene069084:intron | 30.0% |
| ! | ATCAATTTTAGATGGAGGTT+GGG | - | chr5.3:11364463-11364482 | None:intergenic | 30.0% |
| ! | CCTCTCTAACTATACTTTTA+AGG | + | chr5.3:11364096-11364115 | MS.gene069084:intron | 30.0% |
| ! | CCTTAAAAGTATAGTTAGAG+AGG | - | chr5.3:11364099-11364118 | None:intergenic | 30.0% |
| ! | GCATTATTTAAAGCATTTCC+TGG | + | chr5.3:11363219-11363238 | MS.gene069084:intron | 30.0% |
| ! | TTGAATTTAAGACTGAGCTA+AGG | - | chr5.3:11365377-11365396 | None:intergenic | 30.0% |
| !! | GAAAAGGAAGGTACAAATTT+TGG | + | chr5.3:11361928-11361947 | MS.gene069084:CDS | 30.0% |
| !! | TGCATAAACTTTTAGGAAGA+TGG | + | chr5.3:11363788-11363807 | MS.gene069084:intron | 30.0% |
| !!! | CTAAAAGTTGAGCCTTTTTT+AGG | - | chr5.3:11364403-11364422 | None:intergenic | 30.0% |
| !!! | GAGATCTTGTTTTCTTTGAA+AGG | + | chr5.3:11363559-11363578 | MS.gene069084:intron | 30.0% |
| AAAAAGGAAAACGTGGATTC+AGG | + | chr5.3:11361897-11361916 | MS.gene069084:CDS | 35.0% | |
| AAAACCAATCAACAAGACTC+AGG | - | chr5.3:11363113-11363132 | None:intergenic | 35.0% | |
| AAAGGAATGCAAATGTGAAG+AGG | - | chr5.3:11365054-11365073 | None:intergenic | 35.0% | |
| AATGCAGAAATAGTGTGGTT+AGG | + | chr5.3:11364298-11364317 | MS.gene069084:intron | 35.0% | |
| AATGTTTGAATAGAGGACTC+AGG | - | chr5.3:11364872-11364891 | None:intergenic | 35.0% | |
| AATTTGCAAATGGGGTTGTT+TGG | + | chr5.3:11363177-11363196 | MS.gene069084:intron | 35.0% | |
| AGATAATCACTTGACTCTCA+AGG | + | chr5.3:11365126-11365145 | MS.gene069084:intron | 35.0% | |
| AGGTTTCCTCTATTTAGTAC+AGG | + | chr5.3:11364053-11364072 | MS.gene069084:intron | 35.0% | |
| ATAGTTTAACTGGAAGTTCC+TGG | + | chr5.3:11363920-11363939 | MS.gene069084:intron | 35.0% | |
| ATTGTAAACCAACGAATCTC+GGG | - | chr5.3:11363368-11363387 | None:intergenic | 35.0% | |
| CAAACTTGTGACGAATTAGA+TGG | + | chr5.3:11364163-11364182 | MS.gene069084:intron | 35.0% | |
| CAAGTAGTTAGTTATGTCAG+TGG | - | chr5.3:11362645-11362664 | None:intergenic | 35.0% | |
| CAATTATGACCTTAGCATCT+TGG | - | chr5.3:11364010-11364029 | None:intergenic | 35.0% | |
| CTTCGTCTTGGATCAATTAA+AGG | - | chr5.3:11364128-11364147 | None:intergenic | 35.0% | |
| GATAATCACTTGACTCTCAA+GGG | + | chr5.3:11365127-11365146 | MS.gene069084:intron | 35.0% | |
| GATCAATTAAAGGACACTCT+GGG | - | chr5.3:11363988-11364007 | None:intergenic | 35.0% | |
| GTCATGTCAAGTCATAAGTA+TGG | + | chr5.3:11364198-11364217 | MS.gene069084:intron | 35.0% | |
| TACAATCACCCAAAGATTCA+AGG | + | chr5.3:11363947-11363966 | MS.gene069084:intron | 35.0% | |
| TTTCCAAAATGATGACACAG+TGG | - | chr5.3:11364951-11364970 | None:intergenic | 35.0% | |
| ! | GATTCAGGTTTGTTTGGAAA+AGG | + | chr5.3:11361912-11361931 | MS.gene069084:CDS | 35.0% |
| ! | TCTAGTTTGGTCCCTAAAAA+AGG | + | chr5.3:11364388-11364407 | MS.gene069084:intron | 35.0% |
| ! | TTTTCCTACATAAGTCTCAC+AGG | - | chr5.3:11363305-11363324 | None:intergenic | 35.0% |
| !! | CCACACTATTTCTGCATTAT+CGG | - | chr5.3:11364296-11364315 | None:intergenic | 35.0% |
| AAAAAACCTGGGAACCAGTT+TGG | + | chr5.3:11364792-11364811 | MS.gene069084:intron | 40.0% | |
| AAAAGCGAGAAGCAAAATCG+CGG | - | chr5.3:11361961-11361980 | None:intergenic | 40.0% | |
| AAGATCCATTATGGTCACTG+AGG | + | chr5.3:11364351-11364370 | MS.gene069084:intron | 40.0% | |
| ACAAAACCATGGATGGAGAA+AGG | - | chr5.3:11362393-11362412 | None:intergenic | 40.0% | |
| ACAAAGGAAAAGAAGCGATG+CGG | + | chr5.3:11365492-11365511 | MS.gene069084:CDS | 40.0% | |
| AGAAACGGTACCAGTAAACA+TGG | - | chr5.3:11361988-11362007 | None:intergenic | 40.0% | |
| AGAAAGTTGTGAGGCATATG+TGG | + | chr5.3:11362181-11362200 | MS.gene069084:CDS | 40.0% | |
| AGTGATGTGGATGCATAAAG+AGG | - | chr5.3:11363589-11363608 | None:intergenic | 40.0% | |
| ATAGCATCATCTCTAACACC+AGG | - | chr5.3:11362297-11362316 | None:intergenic | 40.0% | |
| CCGATAATGCAGAAATAGTG+TGG | + | chr5.3:11364293-11364312 | MS.gene069084:intron | 40.0% | |
| CTATTCTCAAGGACCAGAAT+AGG | - | chr5.3:11364701-11364720 | None:intergenic | 40.0% | |
| GAAAGTTGTGAGGCATATGT+GGG | + | chr5.3:11362182-11362201 | MS.gene069084:CDS | 40.0% | |
| GAATGTTTGTTTGCGTGTGT+AGG | + | chr5.3:11362143-11362162 | MS.gene069084:intron | 40.0% | |
| GAATTGACTAGTGATGTTCC+TGG | + | chr5.3:11362276-11362295 | MS.gene069084:CDS | 40.0% | |
| GATGACACGACTCAATTACA+TGG | + | chr5.3:11363724-11363743 | MS.gene069084:intron | 40.0% | |
| GCTCCTTGAGAAAAAAACCT+GGG | + | chr5.3:11364781-11364800 | MS.gene069084:intron | 40.0% | |
| GGAATTTAGCGAAAGTAGAG+AGG | + | chr5.3:11365148-11365167 | MS.gene069084:intron | 40.0% | |
| GGATCAATTAAAGGACACTC+TGG | - | chr5.3:11363989-11364008 | None:intergenic | 40.0% | |
| GTCACTGAGGAAGAAAATAC+AGG | + | chr5.3:11364364-11364383 | MS.gene069084:intron | 40.0% | |
| GTCCTCGCAACAAATAAACT+AGG | + | chr5.3:11364422-11364441 | MS.gene069084:intron | 40.0% | |
| GTGATGTGGATGCATAAAGA+GGG | - | chr5.3:11363588-11363607 | None:intergenic | 40.0% | |
| GTGTCATCACGAGTTAGTAA+AGG | - | chr5.3:11363712-11363731 | None:intergenic | 40.0% | |
| TCAAACTCAATGGTCCTGTT+TGG | + | chr5.3:11362599-11362618 | MS.gene069084:intron | 40.0% | |
| TCAATGGTCCTGTTTGGATT+GGG | + | chr5.3:11362605-11362624 | MS.gene069084:intron | 40.0% | |
| TCAGGAAGAAGATGCAATCT+AGG | - | chr5.3:11364621-11364640 | None:intergenic | 40.0% | |
| TCGTATAACCCAATCCAAAC+AGG | - | chr5.3:11362616-11362635 | None:intergenic | 40.0% | |
| TGCTCCTTGAGAAAAAAACC+TGG | + | chr5.3:11364780-11364799 | MS.gene069084:intron | 40.0% | |
| TGTGTAGGAAATGGAAGAGA+GGG | + | chr5.3:11362158-11362177 | MS.gene069084:intron | 40.0% | |
| TTCTTCCTCAGTGACCATAA+TGG | - | chr5.3:11364359-11364378 | None:intergenic | 40.0% | |
| TTGTTTGCGTGTGTAGGAAA+TGG | + | chr5.3:11362149-11362168 | MS.gene069084:intron | 40.0% | |
| ! | AACGTGGATTCAGGTTTGTT+TGG | + | chr5.3:11361906-11361925 | MS.gene069084:CDS | 40.0% |
| ! | AGACTCTTTGAGAGAGCTTA+TGG | + | chr5.3:11362667-11362686 | MS.gene069084:intron | 40.0% |
| ! | ATGAACTGTTAGCTTCGTCT+TGG | - | chr5.3:11364140-11364159 | None:intergenic | 40.0% |
| ! | CAGGTTTGTTTGGAAAAGGA+AGG | + | chr5.3:11361916-11361935 | MS.gene069084:CDS | 40.0% |
| ! | CATCATATTTCAGAGAGCAC+AGG | + | chr5.3:11365442-11365461 | MS.gene069084:intron | 40.0% |
| ! | GTCCTAGTTTATTTGTTGCG+AGG | - | chr5.3:11364427-11364446 | None:intergenic | 40.0% |
| ! | TGTCCACTGTGTCATCATTT+TGG | + | chr5.3:11364945-11364964 | MS.gene069084:intron | 40.0% |
| ! | TTCCTTTGTCAGCTTGCTTA+AGG | - | chr5.3:11365481-11365500 | None:intergenic | 40.0% |
| !! | CGATTTTGCTTCTCGCTTTT+TGG | + | chr5.3:11361961-11361980 | MS.gene069084:CDS | 40.0% |
| !! | GCTTTTTGGTCCATGTTTAC+TGG | + | chr5.3:11361975-11361994 | MS.gene069084:CDS | 40.0% |
| !! | TGTTTTCTAAGGGACCAAAC+TGG | - | chr5.3:11364809-11364828 | None:intergenic | 40.0% |
| !!! | GTTCCCAGGTTTTTTTCTCA+AGG | - | chr5.3:11364787-11364806 | None:intergenic | 40.0% |
| AAAGCCTCTTGCCAAAACCT+CGG | - | chr5.3:11362240-11362259 | None:intergenic | 45.0% | |
| AAGAGAGGGAGAAAGTTGTG+AGG | + | chr5.3:11362172-11362191 | MS.gene069084:CDS | 45.0% | |
| AAGGAAAACGAACCGTGGAT+TGG | - | chr5.3:11362374-11362393 | None:intergenic | 45.0% | |
| AAGGTCCTTCAATAACGTCC+AGG | - | chr5.3:11364659-11364678 | None:intergenic | 45.0% | |
| AATGTGAAGAGGCTCAGATG+CGG | - | chr5.3:11365043-11365062 | None:intergenic | 45.0% | |
| ACATCGAGATCGTCGTGAAT+AGG | - | chr5.3:11362059-11362078 | None:intergenic | 45.0% | |
| ACCAGACCAACGAAGAGAAA+CGG | - | chr5.3:11362003-11362022 | None:intergenic | 45.0% | |
| AGCCTTAAGCAAGCTGACAA+AGG | + | chr5.3:11365476-11365495 | MS.gene069084:CDS | 45.0% | |
| ATAACGTCCAGGACGAAGAA+AGG | - | chr5.3:11364648-11364667 | None:intergenic | 45.0% | |
| ATGAAGCAAAGCTGTCTGTC+TGG | + | chr5.3:11364258-11364277 | MS.gene069084:intron | 45.0% | |
| ATTGAAGGACCTTGGAGAAC+TGG | + | chr5.3:11364666-11364685 | MS.gene069084:intron | 45.0% | |
| CAAATGGGGTTGTTTGGTTG+GGG | + | chr5.3:11363183-11363202 | MS.gene069084:intron | 45.0% | |
| CCAATCAACAAGACTCAGGT+TGG | - | chr5.3:11363109-11363128 | None:intergenic | 45.0% | |
| CTCAATGGTCCTGTTTGGAT+TGG | + | chr5.3:11362604-11362623 | MS.gene069084:intron | 45.0% | |
| CTGGTGTTCAAGACCTATTC+TGG | + | chr5.3:11364685-11364704 | MS.gene069084:intron | 45.0% | |
| GACGGCAGCGATTAACAAAA+AGG | + | chr5.3:11361881-11361900 | MS.gene069084:CDS | 45.0% | |
| GCAAATGGGGTTGTTTGGTT+GGG | + | chr5.3:11363182-11363201 | MS.gene069084:intron | 45.0% | |
| GCAGAAATAGTGTGGTTAGG+AGG | + | chr5.3:11364301-11364320 | MS.gene069084:intron | 45.0% | |
| GGCTTCTTCGCATATGTTAC+TGG | - | chr5.3:11365356-11365375 | None:intergenic | 45.0% | |
| GTCAGTCTGTAGTCATTGTC+AGG | - | chr5.3:11364547-11364566 | None:intergenic | 45.0% | |
| GTGTGTAGGAAATGGAAGAG+AGG | + | chr5.3:11362157-11362176 | MS.gene069084:intron | 45.0% | |
| GTTTAACTGGAAGTTCCTGG+TGG | + | chr5.3:11363923-11363942 | MS.gene069084:intron | 45.0% | |
| TCTTGAACACCAGTTCTCCA+AGG | - | chr5.3:11364678-11364697 | None:intergenic | 45.0% | |
| TGCAAATGGGGTTGTTTGGT+TGG | + | chr5.3:11363181-11363200 | MS.gene069084:intron | 45.0% | |
| TGGACGTTATTGAAGGACCT+TGG | + | chr5.3:11364658-11364677 | MS.gene069084:intron | 45.0% | |
| TTCGCCTGTGAGACTTATGT+AGG | + | chr5.3:11363298-11363317 | MS.gene069084:intron | 45.0% | |
| TTCGTCCTGGACGTTATTGA+AGG | + | chr5.3:11364651-11364670 | MS.gene069084:intron | 45.0% | |
| TTGCATGAGACTTCTTACCC+AGG | - | chr5.3:11363240-11363259 | None:intergenic | 45.0% | |
| TTTAGATGGAGGTTGGGAGA+GGG | - | chr5.3:11364457-11364476 | None:intergenic | 45.0% | |
| ! | AGTATCGAGGTCACTGGATA+AGG | - | chr5.3:11362036-11362055 | None:intergenic | 45.0% |
| ! | CGTTTTCCTTTCTCCATCCA+TGG | + | chr5.3:11362384-11362403 | MS.gene069084:intron | 45.0% |
| ! | TTTTAGATGGAGGTTGGGAG+AGG | - | chr5.3:11364458-11364477 | None:intergenic | 45.0% |
| !! | AAACGAACCGTGGATTGGAT+AGG | - | chr5.3:11362369-11362388 | None:intergenic | 45.0% |
| !! | AATAGGAGTATCGAGGTCAC+TGG | - | chr5.3:11362042-11362061 | None:intergenic | 45.0% |
| !! | CCAACCTGAGTCTTGTTGAT+TGG | + | chr5.3:11363106-11363125 | MS.gene069084:intron | 45.0% |
| !! | GTTTTGGCAAGAGGCTTTTG+AGG | + | chr5.3:11362242-11362261 | MS.gene069084:CDS | 45.0% |
| !! | TTTAAAAGTTAAATAATAAT+TGG | + | chr5.3:11364326-11364345 | MS.gene069084:intron | 5.0% |
| ACCGTTTCTCTTCGTTGGTC+TGG | + | chr5.3:11361999-11362018 | MS.gene069084:CDS | 50.0% | |
| ATGTGTACACCAACAGCCGT+AGG | + | chr5.3:11362205-11362224 | MS.gene069084:CDS | 50.0% | |
| CTGGTACCGTTTCTCTTCGT+TGG | + | chr5.3:11361994-11362013 | MS.gene069084:CDS | 50.0% | |
| GGAGAAAGGAAAACGAACCG+TGG | - | chr5.3:11362379-11362398 | None:intergenic | 50.0% | |
| TCATGCTTCCCGAGATTCGT+TGG | + | chr5.3:11363357-11363376 | MS.gene069084:intron | 50.0% | |
| TCCACCTCCTATCCAATCCA+CGG | + | chr5.3:11362359-11362378 | MS.gene069084:CDS | 50.0% | |
| TGAAACGCCTTTCTTCGTCC+TGG | + | chr5.3:11364638-11364657 | MS.gene069084:intron | 50.0% | |
| TTTGGGTGATTGTAGCCACC+AGG | - | chr5.3:11363941-11363960 | None:intergenic | 50.0% | |
| !! | AGGACGAAGAAAGGCGTTTC+AGG | - | chr5.3:11364639-11364658 | None:intergenic | 50.0% |
| !! | CGTCGTGAATAGGAGTATCG+AGG | - | chr5.3:11362049-11362068 | None:intergenic | 50.0% |
| ACACCAACAGCCGTAGGATC+AGG | + | chr5.3:11362211-11362230 | MS.gene069084:CDS | 55.0% | |
| ACCTCGGCAACCTGATCCTA+CGG | - | chr5.3:11362224-11362243 | None:intergenic | 55.0% | |
| CAACCTGATCCTACGGCTGT+TGG | - | chr5.3:11362217-11362236 | None:intergenic | 55.0% | |
| GGCTGTGTCAGCAAACAGAG+AGG | + | chr5.3:11363757-11363776 | MS.gene069084:intron | 55.0% | |
| GGTCCTAGACCTAGTGTTGC+CGG | + | chr5.3:11365014-11365033 | MS.gene069084:intron | 55.0% | |
| GTCCTAGACCTAGTGTTGCC+GGG | + | chr5.3:11365015-11365034 | MS.gene069084:intron | 55.0% | |
| TTAATCGCTGCCGTCGTCGT+TGG | - | chr5.3:11361876-11361895 | None:intergenic | 55.0% | |
| ! | AAGGGACCAAACTGGTTCCC+AGG | - | chr5.3:11364801-11364820 | None:intergenic | 55.0% |
| !! | ACCGTGGATTGGATAGGAGG+TGG | - | chr5.3:11362363-11362382 | None:intergenic | 55.0% |
| !! | CGAACCGTGGATTGGATAGG+AGG | - | chr5.3:11362366-11362385 | None:intergenic | 55.0% |
| !! | GGATCAGGTTGCCGAGGTTT+TGG | + | chr5.3:11362226-11362245 | MS.gene069084:CDS | 55.0% |
| !! | GTTGCCGAGGTTTTGGCAAG+AGG | + | chr5.3:11362233-11362252 | MS.gene069084:CDS | 55.0% |
| CACCCGGCAACACTAGGTCT+AGG | - | chr5.3:11365020-11365039 | None:intergenic | 60.0% | |
| ! | CGATGGGCTTCCAACGACGA+CGG | + | chr5.3:11361863-11361882 | MS.gene069084:CDS | 60.0% |
| AGAGGCTCAGATGCGGCACC+CGG | - | chr5.3:11365036-11365055 | None:intergenic | 65.0% | |
| ATGCGGCACCCGGCAACACT+AGG | - | chr5.3:11365026-11365045 | None:intergenic | 65.0% | |
| ! | GCCGTAGGATCAGGTTGCCG+AGG | + | chr5.3:11362220-11362239 | MS.gene069084:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 11361852 | 11365523 | 11361852 | ID=MS.gene069084 |
| chr5.3 | mRNA | 11361852 | 11365523 | 11361852 | ID=MS.gene069084.t1;Parent=MS.gene069084 |
| chr5.3 | exon | 11361852 | 11362082 | 11361852 | ID=MS.gene069084.t1.exon1;Parent=MS.gene069084.t1 |
| chr5.3 | CDS | 11361852 | 11362082 | 11361852 | ID=cds.MS.gene069084.t1;Parent=MS.gene069084.t1 |
| chr5.3 | exon | 11362165 | 11362380 | 11362165 | ID=MS.gene069084.t1.exon2;Parent=MS.gene069084.t1 |
| chr5.3 | CDS | 11362165 | 11362380 | 11362165 | ID=cds.MS.gene069084.t1;Parent=MS.gene069084.t1 |
| chr5.3 | exon | 11365455 | 11365523 | 11365455 | ID=MS.gene069084.t1.exon3;Parent=MS.gene069084.t1 |
| chr5.3 | CDS | 11365455 | 11365523 | 11365455 | ID=cds.MS.gene069084.t1;Parent=MS.gene069084.t1 |
| Gene Sequence |
| Protein sequence |
