AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069864

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069864.t1 MTR_2g101330 97.273 330 8 1 1 329 1 330 0.0 667
MS.gene069864.t1 MTR_3g005210 43.987 316 169 6 5 316 6 317 1.21e-88 268
MS.gene069864.t1 MTR_3g005170 42.991 321 175 6 5 321 10 326 6.54e-85 259
MS.gene069864.t1 MTR_5g056600 41.956 317 179 4 6 319 5 319 1.48e-83 255
MS.gene069864.t1 MTR_8g062110 42.722 316 172 5 5 316 9 319 2.42e-82 253
MS.gene069864.t1 MTR_8g062110 42.722 316 172 5 5 316 18 328 3.33e-82 253
MS.gene069864.t1 MTR_3g005170 46.520 273 142 4 5 276 10 279 1.62e-81 249
MS.gene069864.t1 MTR_0164s0070 90.840 131 12 0 1 131 1 131 1.26e-80 244
MS.gene069864.t1 MTR_0164s0070 81.429 70 13 0 206 275 122 191 9.61e-35 126
MS.gene069864.t1 MTR_8g062440 41.066 319 179 5 5 319 8 321 2.42e-80 247
MS.gene069864.t1 MTR_8g062440 41.250 320 178 6 5 319 8 322 9.88e-80 246
MS.gene069864.t1 MTR_1g022440 39.564 321 185 6 5 319 8 325 5.48e-78 242
MS.gene069864.t1 MTR_4g009040 41.772 316 180 4 4 319 12 323 1.53e-77 240
MS.gene069864.t1 MTR_8g062110 45.055 273 145 3 5 276 9 277 1.61e-77 239
MS.gene069864.t1 MTR_8g062110 45.055 273 145 3 5 276 9 277 2.40e-77 238
MS.gene069864.t1 MTR_8g062440 44.322 273 147 3 5 276 8 276 1.84e-76 238
MS.gene069864.t1 MTR_4g077100 39.936 313 180 6 5 313 11 319 7.66e-76 236
MS.gene069864.t1 MTR_4g077130 40.506 316 180 6 5 316 9 320 9.97e-76 236
MS.gene069864.t1 MTR_5g072620 39.752 322 190 3 1 320 1 320 1.55e-75 235
MS.gene069864.t1 MTR_4g009040 41.250 320 180 5 4 319 12 327 2.97e-75 234
MS.gene069864.t1 MTR_1g022445 38.154 325 192 6 1 319 4 325 4.29e-75 234
MS.gene069864.t1 MTR_4g077100 42.857 273 152 4 5 276 11 280 3.07e-74 230
MS.gene069864.t1 MTR_2g104960 40.557 323 181 5 5 324 20 334 8.67e-72 226
MS.gene069864.t1 MTR_4g009690 39.938 323 175 6 4 319 12 322 2.51e-70 222
MS.gene069864.t1 MTR_4g092080 38.110 328 189 8 2 317 11 336 5.24e-70 221
MS.gene069864.t1 MTR_4g006940 39.198 324 186 5 2 322 14 329 2.81e-69 219
MS.gene069864.t1 MTR_4g009690 39.506 324 176 6 4 319 12 323 3.48e-69 219
MS.gene069864.t1 MTR_3g031650 37.812 320 193 4 1 317 1 317 4.46e-69 218
MS.gene069864.t1 MTR_7g074880 39.571 326 181 10 4 319 7 326 1.70e-68 217
MS.gene069864.t1 MTR_3g031650 40.364 275 162 2 1 275 1 273 3.83e-68 214
MS.gene069864.t1 MTR_7g074730 38.838 327 184 10 4 319 7 328 2.47e-67 214
MS.gene069864.t1 MTR_7g074820 39.144 327 184 10 4 319 7 329 3.33e-67 214
MS.gene069864.t1 MTR_3g005170 38.006 321 160 6 5 321 10 295 1.17e-66 211
MS.gene069864.t1 MTR_7g074850 38.110 328 186 9 4 319 7 329 5.03e-66 211
MS.gene069864.t1 MTR_7g074710 39.571 326 181 9 4 319 7 326 2.62e-64 206
MS.gene069864.t1 MTR_4g081440 35.629 334 194 8 4 319 19 349 2.25e-61 199
MS.gene069864.t1 MTR_4g006940 40.727 275 155 4 2 276 14 280 2.27e-61 197
MS.gene069864.t1 MTR_4g006940 40.727 275 155 4 2 276 14 280 2.27e-61 197
MS.gene069864.t1 MTR_2g028620 35.976 328 192 9 2 319 7 326 7.07e-61 197
MS.gene069864.t1 MTR_4g081440 35.821 335 193 9 4 319 23 354 1.19e-59 195
MS.gene069864.t1 MTR_2g028620 39.130 276 160 5 2 273 7 278 4.12e-59 192
MS.gene069864.t1 MTR_4g023730 33.436 326 202 7 5 319 8 329 7.97e-53 177
MS.gene069864.t1 MTR_7g074870 34.237 295 171 10 38 319 4 288 3.63e-46 158
MS.gene069864.t1 MTR_8g062110 36.123 227 137 4 94 316 11 233 2.41e-42 147
MS.gene069864.t1 MTR_8g062110 38.043 184 110 2 94 276 11 191 1.86e-37 132
MS.gene069864.t1 MTR_7g117190 30.564 337 211 11 4 319 6 340 5.87e-34 127
MS.gene069864.t1 MTR_5g029990 30.075 266 170 5 3 267 10 260 5.45e-32 121
MS.gene069864.t1 MTR_6g406250 30.303 297 191 8 5 292 55 344 6.89e-32 122
MS.gene069864.t1 MTR_2g013230 27.893 337 223 7 4 321 7 342 1.43e-31 121
MS.gene069864.t1 MTR_7g117190 31.169 308 187 11 4 291 6 308 2.18e-31 120
MS.gene069864.t1 MTR_2g013250 27.914 326 211 8 4 308 6 328 3.44e-31 120
MS.gene069864.t1 MTR_2g013260 27.607 326 212 7 4 308 7 329 8.75e-28 111
MS.gene069864.t1 MTR_2g013260 28.328 293 187 6 4 276 7 296 1.75e-26 106
MS.gene069864.t1 MTR_6g406250 34.197 193 121 3 5 193 55 245 3.56e-26 105
MS.gene069864.t1 MTR_3g011130 40.517 116 67 2 97 210 30 145 9.51e-19 82.0
MS.gene069864.t1 MTR_0685s0030 31.757 148 95 4 159 303 2 146 1.05e-18 82.4
MS.gene069864.t1 MTR_0685s0030 33.898 118 76 2 159 276 2 117 2.59e-17 77.0
MS.gene069864.t1 MTR_8g062710 42.105 95 44 2 4 98 19 102 1.08e-15 72.8
MS.gene069864.t1 MTR_3g101500 27.239 268 171 9 4 266 3 251 7.87e-12 65.9
MS.gene069864.t1 MTR_3g101500 27.239 268 171 9 4 266 3 251 8.69e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069864.t1 AT4G35420 70.978 317 91 1 4 320 7 322 6.98e-176 490
MS.gene069864.t1 AT1G51410 43.925 321 174 5 2 319 6 323 5.04e-84 257
MS.gene069864.t1 AT5G19440 43.671 316 172 4 5 317 10 322 5.35e-83 254
MS.gene069864.t1 AT1G68540 41.325 317 181 4 7 319 6 321 9.14e-82 251
MS.gene069864.t1 AT5G58490 41.509 318 182 3 5 320 9 324 7.84e-79 244
MS.gene069864.t1 AT1G09480 40.823 316 179 5 5 316 8 319 1.40e-77 240
MS.gene069864.t1 AT1G09480 40.823 316 179 5 5 316 55 366 3.07e-77 241
MS.gene069864.t1 AT1G09490 40.317 315 182 4 5 316 8 319 4.57e-76 236
MS.gene069864.t1 AT5G42800 39.815 324 186 7 2 319 5 325 1.35e-75 237
MS.gene069864.t1 AT1G66800 40.446 314 179 4 5 316 8 315 3.19e-75 234
MS.gene069864.t1 AT1G09510 40.635 315 181 4 5 316 8 319 6.07e-75 234
MS.gene069864.t1 AT1G25460 42.138 318 175 7 7 319 6 319 1.23e-74 233
MS.gene069864.t1 AT2G02400 38.801 317 188 4 5 319 6 318 4.68e-73 229
MS.gene069864.t1 AT1G09500 39.117 317 186 4 5 316 8 322 9.68e-73 228
MS.gene069864.t1 AT1G09500 41.758 273 156 2 5 276 8 278 1.96e-71 223
MS.gene069864.t1 AT1G61720 37.730 326 189 7 4 317 12 335 4.68e-67 214
MS.gene069864.t1 AT1G15950 39.308 318 182 6 5 319 13 322 8.97e-65 208
MS.gene069864.t1 AT1G15950 39.308 318 182 6 5 319 13 322 8.97e-65 208
MS.gene069864.t1 AT2G33590 38.065 310 189 3 4 313 8 314 2.30e-64 206
MS.gene069864.t1 AT1G80820 37.578 322 190 6 5 323 8 321 1.61e-62 202
MS.gene069864.t1 AT1G76470 39.319 323 189 5 1 319 3 322 1.69e-61 199
MS.gene069864.t1 AT1G15950 39.088 307 176 6 5 308 13 311 2.95e-61 199
MS.gene069864.t1 AT2G33600 38.065 310 189 3 4 313 8 314 4.61e-61 198
MS.gene069864.t1 AT1G09490 37.722 281 169 4 39 316 11 288 4.02e-59 192
MS.gene069864.t1 AT2G45400 36.061 330 191 7 5 319 40 364 7.85e-58 191
MS.gene069864.t1 AT1G15950 41.026 273 153 5 5 277 13 277 1.46e-57 188
MS.gene069864.t1 AT1G15950 40.809 272 153 5 5 276 13 276 4.13e-57 186
MS.gene069864.t1 AT1G15950 40.580 276 156 5 5 280 13 280 5.22e-57 186
MS.gene069864.t1 AT1G09500 36.749 283 172 4 39 316 8 288 1.84e-56 185
MS.gene069864.t1 AT4G27250 33.141 347 199 10 6 326 14 353 1.59e-54 182
MS.gene069864.t1 AT2G45400 37.050 278 166 4 5 274 40 316 9.83e-54 179
MS.gene069864.t1 AT4G27250 33.235 340 198 10 6 326 14 343 1.01e-53 179
MS.gene069864.t1 AT1G80820 38.971 272 158 5 5 276 8 271 1.06e-53 177
MS.gene069864.t1 AT1G68540 38.605 215 127 4 109 319 1 214 2.84e-46 156
MS.gene069864.t1 AT2G45400 33.108 296 180 6 37 319 17 307 1.15e-44 155
MS.gene069864.t1 AT2G23910 28.000 275 189 5 6 279 11 277 5.22e-38 137
MS.gene069864.t1 AT2G23910 27.941 272 187 5 6 276 11 274 1.05e-37 136
MS.gene069864.t1 AT2G45400 37.500 216 126 4 5 212 40 254 1.55e-37 135
MS.gene069864.t1 AT2G23910 27.473 273 189 5 6 277 11 275 3.66e-37 134
MS.gene069864.t1 AT1G15950 34.513 226 143 3 97 319 1 224 9.52e-36 130
MS.gene069864.t1 AT4G30470 27.636 275 187 6 6 278 11 275 3.69e-32 122
MS.gene069864.t1 AT2G23910 26.295 251 176 5 30 279 1 243 1.89e-29 114
MS.gene069864.t1 AT5G14700 29.167 264 172 6 5 258 55 313 3.64e-26 107
MS.gene069864.t1 AT5G14700 30.303 198 130 3 5 195 55 251 3.57e-19 86.7
MS.gene069864.t1 AT4G33360 25.632 277 181 9 4 274 2 259 6.00e-14 72.0
MS.gene069864.t1 AT4G33360 25.632 277 181 9 4 274 14 271 6.98e-14 71.6
MS.gene069864.t1 AT4G33360 25.632 277 181 9 4 274 14 271 7.00e-14 72.0

Find 64 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAGAAAGTTGAACATTTA+TGG 0.118270 2.1:+3809678 MS.gene069864:CDS
ATTGGAACAGTTAGAGATTT+AGG 0.193478 2.1:+3809511 MS.gene069864:CDS
ACTAGTCCAAGCTGATTTAA+TGG 0.254779 2.1:+3809730 MS.gene069864:CDS
CATAAATCTGTTGGTAAGTT+AGG 0.314397 2.1:-3810410 None:intergenic
GACTCGTCTATTGGTATGTT+TGG 0.328808 2.1:-3810163 None:intergenic
ACTGGAAAGCTGGAGAGTTT+AGG 0.349228 2.1:+3810966 MS.gene069864:CDS
AGTTGAACATTTATGGAAGT+TGG 0.360831 2.1:+3809685 MS.gene069864:CDS
GAACACAAAGTATGTGTAAC+AGG 0.361376 2.1:+3809427 MS.gene069864:CDS
CTGCCAGTGTCTTTGACATT+GGG 0.362452 2.1:-3810313 None:intergenic
AATAATGGATAATGATGATT+TGG 0.363243 2.1:+3810680 MS.gene069864:CDS
TCTGCCAGTGTCTTTGACAT+TGG 0.367364 2.1:-3810314 None:intergenic
TAGCTTCGACAACGCGATCA+TGG 0.382636 2.1:+3809760 MS.gene069864:CDS
TTGTCTGGATATCATGTCAT+TGG 0.385389 2.1:+3809493 MS.gene069864:CDS
CTTTGCATCGTATGTGGAGC+AGG 0.392610 2.1:+3811028 MS.gene069864:CDS
CTCCAAGATGACTCGTCTAT+TGG 0.402699 2.1:-3810172 None:intergenic
GTATGTGTAACAGGAGCTTC+AGG 0.422762 2.1:+3809436 MS.gene069864:CDS
CGAGTCATCTTGGAGCTCAT+TGG 0.428944 2.1:+3810180 MS.gene069864:CDS
TTTCTTCCATTAAATCAGCT+TGG 0.450929 2.1:-3809736 None:intergenic
TACCAATAGACGAGTCATCT+TGG 0.465845 2.1:+3810170 MS.gene069864:CDS
AGAAATTTCAATGGCATGGA+AGG 0.468896 2.1:+3810565 MS.gene069864:CDS
AACACCACTCGAACAAGGGC+TGG 0.477786 2.1:-3810097 None:intergenic
TGAACTAAACACTGGAAAGC+TGG 0.486679 2.1:+3810956 MS.gene069864:CDS
AGCTTCGACAACGCGATCAT+GGG 0.489980 2.1:+3809761 MS.gene069864:CDS
ATGCTAGCAAATCGTTATCC+TGG 0.493557 2.1:+3810708 MS.gene069864:CDS
TTTGATATATGATTGAGTAC+TGG 0.499172 2.1:-3809812 None:intergenic
TGGGAATATTGCAAAGAGAA+TGG 0.500498 2.1:+3810347 MS.gene069864:CDS
ATTTCAATGGCATGGAAGGA+TGG 0.500563 2.1:+3810569 MS.gene069864:CDS
TTAGGTCCAATTATGAATGA+TGG 0.503563 2.1:-3810392 None:intergenic
AGGCTTTGTTCTCATAAAGA+AGG 0.506223 2.1:-3810629 None:intergenic
ACAATAACACAGCGCGGGGT+TGG 0.508480 2.1:-3811070 None:intergenic
TTTAGCGTACCTTGGACCGC+TGG 0.513714 2.1:-3810049 None:intergenic
TTTCAATGGCATGGAAGGAT+GGG 0.514191 2.1:+3810570 MS.gene069864:CDS
ACTGAGAAATTTCAATGGCA+TGG 0.516718 2.1:+3810561 MS.gene069864:CDS
CCAGTGTTTAGTTCATAATG+TGG 0.519415 2.1:-3810948 None:intergenic
TCATATATCAAATGATCCTA+AGG 0.522536 2.1:+3809823 MS.gene069864:CDS
TCCACTGCATCTGATGTGTT+AGG 0.524578 2.1:+3810434 MS.gene069864:CDS
CAAAGAGAATGGAATAGACT+TGG 0.535237 2.1:+3810358 MS.gene069864:CDS
GAACATTTATGGAAGTTGGA+AGG 0.542146 2.1:+3809689 MS.gene069864:CDS
TGATTACAATAACACAGCGC+GGG 0.546732 2.1:-3811075 None:intergenic
AACACAGCGCGGGGTTGGTG+AGG 0.553389 2.1:-3811065 None:intergenic
TGATTGCTTTGCATCGTATG+TGG 0.561860 2.1:+3811022 MS.gene069864:CDS
AGGCTAACACCACTCGAACA+AGG 0.571304 2.1:-3810102 None:intergenic
GCAACACATTTAGCGTACCT+TGG 0.572296 2.1:-3810057 None:intergenic
CCACATTATGAACTAAACAC+TGG 0.581273 2.1:+3810948 MS.gene069864:CDS
ATCTTGGAACCAGCGGTCCA+AGG 0.581499 2.1:+3810040 MS.gene069864:CDS
AACGCGATCATGGGATGCAA+AGG 0.582374 2.1:+3809770 MS.gene069864:CDS
GAATCCAGCCCTTGTTCGAG+TGG 0.584274 2.1:+3810093 MS.gene069864:CDS
GCAGTGGAACATAAATCTGT+TGG 0.588541 2.1:-3810419 None:intergenic
GCCTAACACATCAGATGCAG+TGG 0.588657 2.1:-3810435 None:intergenic
GGGAAACTGAGAAATTTCAA+TGG 0.589773 2.1:+3810556 MS.gene069864:CDS
GATGTGTTAGGCTTGTTCAA+AGG 0.590361 2.1:+3810446 MS.gene069864:CDS
GGCTAACACCACTCGAACAA+GGG 0.595366 2.1:-3810101 None:intergenic
AGGATAACGATTTGCTAGCA+TGG 0.597463 2.1:-3810706 None:intergenic
GGAATTGTGTGAGAAACTCC+AGG 0.603325 2.1:+3810201 MS.gene069864:CDS
TTTGCATCGTATGTGGAGCA+GGG 0.624683 2.1:+3811029 MS.gene069864:CDS
TATGAGAACAAAGCCTCTCG+TGG 0.641397 2.1:+3810636 MS.gene069864:CDS
GGCAGAAATCTTGGAACCAG+CGG 0.644848 2.1:+3810033 MS.gene069864:intron
GATTACAATAACACAGCGCG+GGG 0.652504 2.1:-3811074 None:intergenic
GTACCCAATGTCAAAGACAC+TGG 0.656150 2.1:+3810310 MS.gene069864:CDS
TATATGATTGAGTACTGGAG+AGG 0.675116 2.1:-3809807 None:intergenic
GCAAAGGTATCTACCACGAG+AGG 0.676611 2.1:-3810649 None:intergenic
TTGATTACAATAACACAGCG+CGG 0.704289 2.1:-3811076 None:intergenic
TCTAACAGCTGAAGACGATG+AGG 0.704563 2.1:-3810122 None:intergenic
TGAGTACTGGAGAGGCAATG+TGG 0.709788 2.1:-3809799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATATGATATTATTCTT+AGG + chr2.1:3809891-3809910 MS.gene069864:intron 15.0%
!! ATATCTTTGTATGATTTATT+TGG + chr2.1:3810899-3810918 MS.gene069864:intron 15.0%
!! ATTTAATCACATTACAATAT+TGG + chr2.1:3810826-3810845 MS.gene069864:intron 15.0%
!! GTAAAAATGAAAATGAAAAT+AGG - chr2.1:3809565-3809584 None:intergenic 15.0%
!! TATAAATATATGATTACTTG+AGG - chr2.1:3810236-3810255 None:intergenic 15.0%
!!! TTTATTTTATATATACTTGC+AGG + chr2.1:3809650-3809669 MS.gene069864:intron 15.0%
!! AACAAACTTGTATTGAATTA+AGG + chr2.1:3810283-3810302 MS.gene069864:intron 20.0%
!! AATGAAAATGAAAATAGGTT+TGG - chr2.1:3809560-3809579 None:intergenic 20.0%
!! TAAAAAAAAAATTACACCGT+CGG + chr2.1:3810793-3810812 MS.gene069864:intron 20.0%
!! TAATCAAAATTCAAACATCA+TGG + chr2.1:3809957-3809976 MS.gene069864:intron 20.0%
!! TTAAATTCTATATATACCGA+CGG - chr2.1:3810812-3810831 None:intergenic 20.0%
!!! AATAATGGATAATGATGATT+TGG + chr2.1:3810680-3810699 MS.gene069864:CDS 20.0%
!!! ATTTTACCATCATTCATAAT+TGG + chr2.1:3810386-3810405 MS.gene069864:CDS 20.0%
!!! GTTAAATTTTGTCAAAAAAC+AGG + chr2.1:3810012-3810031 MS.gene069864:intron 20.0%
!!! TGAATTTTGATTAATGTATG+AGG - chr2.1:3809950-3809969 None:intergenic 20.0%
!!! TTACTATGATGTTATTTGAT+TGG + chr2.1:3810761-3810780 MS.gene069864:intron 20.0%
! ACTTTGATTAATCTCTGATA+TGG + chr2.1:3809987-3810006 MS.gene069864:intron 25.0%
! ATACTGCTAATTAAACTAAC+AGG + chr2.1:3810534-3810553 MS.gene069864:intron 25.0%
! TACTGCTAATTAAACTAACA+GGG + chr2.1:3810535-3810554 MS.gene069864:intron 25.0%
! TCATATATCAAATGATCCTA+AGG + chr2.1:3809823-3809842 MS.gene069864:CDS 25.0%
! TGATTAATGTATGAGGTTAT+AGG - chr2.1:3809943-3809962 None:intergenic 25.0%
! TTTGATATATGATTGAGTAC+TGG - chr2.1:3809815-3809834 None:intergenic 25.0%
!! TAACTATTAACCAACCTTTT+GGG - chr2.1:3810744-3810763 None:intergenic 25.0%
!!! GTATGATTTATTTGGTTTTC+AGG + chr2.1:3810907-3810926 MS.gene069864:intron 25.0%
ACTGCTAATTAAACTAACAG+GGG + chr2.1:3810536-3810555 MS.gene069864:intron 30.0%
ACTTGTATTGAATTAAGGCA+TGG + chr2.1:3810288-3810307 MS.gene069864:intron 30.0%
AGCAGAAAGTTGAACATTTA+TGG + chr2.1:3809678-3809697 MS.gene069864:CDS 30.0%
AGTTGAACATTTATGGAAGT+TGG + chr2.1:3809685-3809704 MS.gene069864:CDS 30.0%
ATTGGAACAGTTAGAGATTT+AGG + chr2.1:3809511-3809530 MS.gene069864:CDS 30.0%
CCTTTGCAGTTCAAAAATAA+TGG + chr2.1:3810665-3810684 MS.gene069864:CDS 30.0%
TAAACACAGCTTAGAAGAAA+AGG + chr2.1:3810862-3810881 MS.gene069864:intron 30.0%
TAAATGACATATCACACCTT+AGG - chr2.1:3809842-3809861 None:intergenic 30.0%
TATGATTACTTGAGGAAATG+TGG - chr2.1:3810228-3810247 None:intergenic 30.0%
TTAGGTCCAATTATGAATGA+TGG - chr2.1:3810395-3810414 None:intergenic 30.0%
TTTCTTCCATTAAATCAGCT+TGG - chr2.1:3809739-3809758 None:intergenic 30.0%
! ATTAAGCAACTTCTTTTGTC+TGG + chr2.1:3809478-3809497 MS.gene069864:CDS 30.0%
! CATAAATCTGTTGGTAAGTT+AGG - chr2.1:3810413-3810432 None:intergenic 30.0%
! GTAACTATTAACCAACCTTT+TGG - chr2.1:3810745-3810764 None:intergenic 30.0%
!!! CCATTATTTTTGAACTGCAA+AGG - chr2.1:3810668-3810687 None:intergenic 30.0%
ACTGAGAAATTTCAATGGCA+TGG + chr2.1:3810561-3810580 MS.gene069864:CDS 35.0%
AGAAATTTCAATGGCATGGA+AGG + chr2.1:3810565-3810584 MS.gene069864:CDS 35.0%
CAAAAAACAGGCAGAAATCT+TGG + chr2.1:3810024-3810043 MS.gene069864:intron 35.0%
CAAAGAGAATGGAATAGACT+TGG + chr2.1:3810358-3810377 MS.gene069864:CDS 35.0%
CCACATTATGAACTAAACAC+TGG + chr2.1:3810948-3810967 MS.gene069864:CDS 35.0%
GAACACAAAGTATGTGTAAC+AGG + chr2.1:3809427-3809446 MS.gene069864:CDS 35.0%
GAACATTTATGGAAGTTGGA+AGG + chr2.1:3809689-3809708 MS.gene069864:CDS 35.0%
GGGAAACTGAGAAATTTCAA+TGG + chr2.1:3810556-3810575 MS.gene069864:CDS 35.0%
TACATGCACACAAATGTTCT+AGG + chr2.1:3810469-3810488 MS.gene069864:intron 35.0%
TGGGAATATTGCAAAGAGAA+TGG + chr2.1:3810347-3810366 MS.gene069864:CDS 35.0%
TTGTCTGGATATCATGTCAT+TGG + chr2.1:3809493-3809512 MS.gene069864:CDS 35.0%
! ACTAGTCCAAGCTGATTTAA+TGG + chr2.1:3809730-3809749 MS.gene069864:CDS 35.0%
! CCAGTGTTTAGTTCATAATG+TGG - chr2.1:3810951-3810970 None:intergenic 35.0%
! TTTTCCAATTCCCAAAAGGT+TGG + chr2.1:3810731-3810750 MS.gene069864:intron 35.0%
!! AGGCTTTGTTCTCATAAAGA+AGG - chr2.1:3810632-3810651 None:intergenic 35.0%
!! TATATGATTGAGTACTGGAG+AGG - chr2.1:3809810-3809829 None:intergenic 35.0%
!! TTAACCAACCTTTTGGGAAT+TGG - chr2.1:3810738-3810757 None:intergenic 35.0%
ATGCTAGCAAATCGTTATCC+TGG + chr2.1:3810708-3810727 MS.gene069864:CDS 40.0%
ATTTCAATGGCATGGAAGGA+TGG + chr2.1:3810569-3810588 MS.gene069864:CDS 40.0%
GACTCGTCTATTGGTATGTT+TGG - chr2.1:3810166-3810185 None:intergenic 40.0%
GCAGTGGAACATAAATCTGT+TGG - chr2.1:3810422-3810441 None:intergenic 40.0%
TACCAATAGACGAGTCATCT+TGG + chr2.1:3810170-3810189 MS.gene069864:CDS 40.0%
TGAACTAAACACTGGAAAGC+TGG + chr2.1:3810956-3810975 MS.gene069864:CDS 40.0%
TGATTGCTTTGCATCGTATG+TGG + chr2.1:3811022-3811041 MS.gene069864:CDS 40.0%
TTTCAATGGCATGGAAGGAT+GGG + chr2.1:3810570-3810589 MS.gene069864:CDS 40.0%
! GATGTGTTAGGCTTGTTCAA+AGG + chr2.1:3810446-3810465 MS.gene069864:CDS 40.0%
!! AGGATAACGATTTGCTAGCA+TGG - chr2.1:3810709-3810728 None:intergenic 40.0%
!! CTGGTTTTCCAATTCCCAAA+AGG + chr2.1:3810727-3810746 MS.gene069864:CDS 40.0%
!! CTTTTGGGAATTGGAAAACC+AGG - chr2.1:3810729-3810748 None:intergenic 40.0%
ACTGGAAAGCTGGAGAGTTT+AGG + chr2.1:3810966-3810985 MS.gene069864:CDS 45.0%
ACTGGCAGAAAAAGCAGCTT+GGG + chr2.1:3810328-3810347 MS.gene069864:CDS 45.0%
CTCCAAGATGACTCGTCTAT+TGG - chr2.1:3810175-3810194 None:intergenic 45.0%
CTGCCAGTGTCTTTGACATT+GGG - chr2.1:3810316-3810335 None:intergenic 45.0%
GCAACACATTTAGCGTACCT+TGG - chr2.1:3810060-3810079 None:intergenic 45.0%
GGAATTGTGTGAGAAACTCC+AGG + chr2.1:3810201-3810220 MS.gene069864:CDS 45.0%
GTACCCAATGTCAAAGACAC+TGG + chr2.1:3810310-3810329 MS.gene069864:CDS 45.0%
GTATGTGTAACAGGAGCTTC+AGG + chr2.1:3809436-3809455 MS.gene069864:CDS 45.0%
TACTTGAGGAAATGTGGACC+TGG - chr2.1:3810222-3810241 None:intergenic 45.0%
TATGAGAACAAAGCCTCTCG+TGG + chr2.1:3810636-3810655 MS.gene069864:CDS 45.0%
TCCACTGCATCTGATGTGTT+AGG + chr2.1:3810434-3810453 MS.gene069864:CDS 45.0%
TCTAACAGCTGAAGACGATG+AGG - chr2.1:3810125-3810144 None:intergenic 45.0%
TCTGCCAGTGTCTTTGACAT+TGG - chr2.1:3810317-3810336 None:intergenic 45.0%
TTTGCATCGTATGTGGAGCA+GGG + chr2.1:3811029-3811048 MS.gene069864:CDS 45.0%
! AACAGGAGCTTCAGGCTTTT+TGG + chr2.1:3809444-3809463 MS.gene069864:CDS 45.0%
!!! CTTCAGGCTTTTTGGCTTCT+TGG + chr2.1:3809452-3809471 MS.gene069864:CDS 45.0%
AACGCGATCATGGGATGCAA+AGG + chr2.1:3809770-3809789 MS.gene069864:CDS 50.0%
AGCTTCGACAACGCGATCAT+GGG + chr2.1:3809761-3809780 MS.gene069864:CDS 50.0%
AGGCTAACACCACTCGAACA+AGG - chr2.1:3810105-3810124 None:intergenic 50.0%
CACTGGCAGAAAAAGCAGCT+TGG + chr2.1:3810327-3810346 MS.gene069864:CDS 50.0%
CGAGTCATCTTGGAGCTCAT+TGG + chr2.1:3810180-3810199 MS.gene069864:CDS 50.0%
CTTTGCATCGTATGTGGAGC+AGG + chr2.1:3811028-3811047 MS.gene069864:CDS 50.0%
GCCTAACACATCAGATGCAG+TGG - chr2.1:3810438-3810457 None:intergenic 50.0%
GGCAGAAATCTTGGAACCAG+CGG + chr2.1:3810033-3810052 MS.gene069864:intron 50.0%
GGCTAACACCACTCGAACAA+GGG - chr2.1:3810104-3810123 None:intergenic 50.0%
TAGCTTCGACAACGCGATCA+TGG + chr2.1:3809760-3809779 MS.gene069864:CDS 50.0%
!! GCAAAGGTATCTACCACGAG+AGG - chr2.1:3810652-3810671 None:intergenic 50.0%
!! TGAGTACTGGAGAGGCAATG+TGG - chr2.1:3809802-3809821 None:intergenic 50.0%
AACACCACTCGAACAAGGGC+TGG - chr2.1:3810100-3810119 None:intergenic 55.0%
ACAATAACACAGCGCGGGGT+TGG - chr2.1:3811073-3811092 None:intergenic 55.0%
ATCTTGGAACCAGCGGTCCA+AGG + chr2.1:3810040-3810059 MS.gene069864:CDS 55.0%
GAATCCAGCCCTTGTTCGAG+TGG + chr2.1:3810093-3810112 MS.gene069864:CDS 55.0%
TTTAGCGTACCTTGGACCGC+TGG - chr2.1:3810052-3810071 None:intergenic 55.0%
!! AACACAGCGCGGGGTTGGTG+AGG - chr2.1:3811068-3811087 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 3809424 3811094 3809424 ID=MS.gene069864
chr2.1 mRNA 3809424 3811094 3809424 ID=MS.gene069864.t1;Parent=MS.gene069864
chr2.1 exon 3809424 3809532 3809424 ID=MS.gene069864.t1.exon1;Parent=MS.gene069864.t1
chr2.1 CDS 3809424 3809532 3809424 ID=cds.MS.gene069864.t1;Parent=MS.gene069864.t1
chr2.1 exon 3809672 3809844 3809672 ID=MS.gene069864.t1.exon2;Parent=MS.gene069864.t1
chr2.1 CDS 3809672 3809844 3809672 ID=cds.MS.gene069864.t1;Parent=MS.gene069864.t1
chr2.1 exon 3810034 3810222 3810034 ID=MS.gene069864.t1.exon3;Parent=MS.gene069864.t1
chr2.1 CDS 3810034 3810222 3810034 ID=cds.MS.gene069864.t1;Parent=MS.gene069864.t1
chr2.1 exon 3810305 3810467 3810305 ID=MS.gene069864.t1.exon4;Parent=MS.gene069864.t1
chr2.1 CDS 3810305 3810467 3810305 ID=cds.MS.gene069864.t1;Parent=MS.gene069864.t1
chr2.1 exon 3810556 3810748 3810556 ID=MS.gene069864.t1.exon5;Parent=MS.gene069864.t1
chr2.1 CDS 3810556 3810748 3810556 ID=cds.MS.gene069864.t1;Parent=MS.gene069864.t1
chr2.1 exon 3810929 3811094 3810929 ID=MS.gene069864.t1.exon6;Parent=MS.gene069864.t1
chr2.1 CDS 3810929 3811094 3810929 ID=cds.MS.gene069864.t1;Parent=MS.gene069864.t1
Gene Sequence

>MS.gene069864

ATGGAACACAAAGTATGTGTAACAGGAGCTTCAGGCTTTTTGGCTTCTTGGCTTATTAAGCAACTTCTTTTGTCTGGATATCATGTCATTGGAACAGTTAGAGATTTAGGTAAAATGTATTTTATGATCATGACCAAACCTATTTTCATTTTCATTTTTACAATATTCAACTAATAAGTTGCAAAATGTAATTACATTTAAACACATTTAACATATGCATGACATTTTTATTTTATATATACTTGCAGGTAAGAAGCAGAAAGTTGAACATTTATGGAAGTTGGAAGGAGCAACAGAAAGACTCGAACTAGTCCAAGCTGATTTAATGGAAGAAAATAGCTTCGACAACGCGATCATGGGATGCAAAGGTGTCTTCCACATTGCCTCTCCAGTACTCAATCATATATCAAATGATCCTAAGGTGTGATATGTCATTTATATTTCTATGTTTTCATGAAACATGTTGCAACTATATGATATTATTCTTAGGTATCTCTATGTTATGTTATGTTACAACCTATAACCTCATACATTAATCAAAATTCAAACATCATGGAAACTATACTTTGATTAATCTCTGATATGGTTGTTAAATTTTGTCAAAAAACAGGCAGAAATCTTGGAACCAGCGGTCCAAGGTACGCTAAATGTGTTGCGCTCTTGTCGAAAGAATCCAGCCCTTGTTCGAGTGGTGTTAGCCTCATCGTCTTCAGCTGTTAGAGTAAGAGCTGATTTTGATCCAAACATACCAATAGACGAGTCATCTTGGAGCTCATTGGAATTGTGTGAGAAACTCCAGGTCCACATTTCCTCAAGTAATCATATATTTATAAGATTTTGATTAGCATGTACTTAATGTAACAAACTTGTATTGAATTAAGGCATGGTACCCAATGTCAAAGACACTGGCAGAAAAAGCAGCTTGGGAATATTGCAAAGAGAATGGAATAGACTTGGTGACTATTTTACCATCATTCATAATTGGACCTAACTTACCAACAGATTTATGTTCCACTGCATCTGATGTGTTAGGCTTGTTCAAAGGTACATGCACACAAATGTTCTAGGCTTAATTTGATTGCTATATTTTGTAAAATCATATGATTGACTATACTGCTAATTAAACTAACAGGGGAAACTGAGAAATTTCAATGGCATGGAAGGATGGGATATGTTCATATCGATGATGTTGCACTTTGTCACATCCTTCTTTATGAGAACAAAGCCTCTCGTGGTAGATACCTTTGCAGTTCAAAAATAATGGATAATGATGATTTGGTTGCCATGCTAGCAAATCGTTATCCTGGTTTTCCAATTCCCAAAAGGTTGGTTAATAGTTACTATGATGTTATTTGATTGGATACATGTATAAAAAAAAAATTACACCGTCGGTATATATAGAATTTAATCACATTACAATATTGGAAACTAGAAAATGTAAACACAGCTTAGAAGAAAAGGAAAAACTAATATGTATATCTTTGTATGATTTATTTGGTTTTCAGGTTCAAGAAACTAGATAGACCACATTATGAACTAAACACTGGAAAGCTGGAGAGTTTAGGATTCAAGTTTAAATCTGTTGAAGAAATGTTTGATGATTGCTTTGCATCGTATGTGGAGCAGGGTCATCTCACTCTTCCTCACCAACCCCGCGCTGTGTTATTGTAA
Protein sequence

>MS.gene069864.t1

MEHKVCVTGASGFLASWLIKQLLLSGYHVIGTVRDLGKKQKVEHLWKLEGATERLELVQADLMEENSFDNAIMGCKGVFHIASPVLNHISNDPKAEILEPAVQGTLNVLRSCRKNPALVRVVLASSSSAVRVRADFDPNIPIDESSWSSLELCEKLQAWYPMSKTLAEKAAWEYCKENGIDLVTILPSFIIGPNLPTDLCSTASDVLGLFKGETEKFQWHGRMGYVHIDDVALCHILLYENKASRGRYLCSSKIMDNDDLVAMLANRYPGFPIPKRFKKLDRPHYELNTGKLESLGFKFKSVEEMFDDCFASYVEQGHLTLPHQPRAVLL