AlfalfaGEDB | MS.gene070118

M. sativa cultivar XinJiangDaYe / MS.gene070118

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070118.t1	XP_003612657.1	98.7	548	5	1	1	548	1	546	4.70E-290	1006.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070118.t1	G7K875	98.7	548	5	1	1	548	1	546	3.4e-290	1006.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050338	MS.gene070118	0.830664	2.59E-55	-1.69E-46
MS.gene050444	MS.gene070118	-0.812242	4.68E-51	-1.69E-46
MS.gene052129	MS.gene070118	0.84735	1.22E-59	-1.69E-46
MS.gene052143	MS.gene070118	0.814444	1.54E-51	-1.69E-46
MS.gene054633	MS.gene070118	0.801414	9.11E-49	-1.69E-46
MS.gene05470	MS.gene070118	-0.802547	5.33E-49	-1.69E-46
MS.gene055134	MS.gene070118	0.812128	4.95E-51	-1.69E-46
MS.gene055729	MS.gene070118	0.801642	8.18E-49	-1.69E-46
MS.gene055730	MS.gene070118	0.80184	7.45E-49	-1.69E-46
MS.gene055731	MS.gene070118	0.821509	3.89E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070118.t1	MTR_5g027460	98.723	548	5	1	1	548	1	546	0.0	1093
MS.gene070118.t1	MTR_8g071050	58.627	510	184	8	46	548	15	504	0.0	584

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 120 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATCCTCATGCTATTGG+AGG	0.534903	5.4:+18139410	MS.gene070118:CDS
AACGAAGTCCTAATCCGTCC+TGG	0.555456	5.4:-18139881	None:intergenic
AACGAGTGGGAAAAGGAAAT+AGG	0.408665	5.4:-18139549	None:intergenic
AAGAAGGTGCTTTCTCTATA+TGG	0.325715	5.4:+18139801	MS.gene070118:CDS
AAGGAAAGGAAGCCAAGAAT+TGG	0.479551	5.4:-18138906	None:intergenic
ACAATGAAACGAGTGGGAAA+AGG	0.514084	5.4:-18139556	None:intergenic
ACAGCTCTGTTGTGTAAGTC+AGG	0.431402	5.4:-18136771	None:intergenic
ACAGTTGCAGCAACAGGTGT+AGG	0.603510	5.4:+18138960	MS.gene070118:CDS
ACATCAATTGCTTGGGCTAC+AGG	0.393116	5.4:+18138867	MS.gene070118:CDS
ACGGACACAGTCACTGGAAA+TGG	0.347797	5.4:+18139681	MS.gene070118:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAACCATAGTCTCAAG+TGG	-	chr5.4:18138013-18138032	None:intergenic	30.0%
AATTAAAGACTTAACCGTTG+AGG	-	chr5.4:18137980-18137999	None:intergenic	30.0%
ACATAGGGTTCCATAAAATA+AGG	+	chr5.4:18137552-18137571	MS.gene070118:intron	30.0%
CATACAAGTTTCTTACACAT+AGG	-	chr5.4:18138282-18138301	None:intergenic	30.0%
CCAAAAGTTTCAAATCTAGA+AGG	-	chr5.4:18136852-18136871	None:intergenic	30.0%
CTATGTGTAAGAAACTTGTA+TGG	+	chr5.4:18138280-18138299	MS.gene070118:intron	30.0%
GGATATTTGAAGATGGAAAA+AGG	-	chr5.4:18139398-18139417	None:intergenic	30.0%
GGTACCAAGGTTAATAAATA+GGG	-	chr5.4:18137746-18137765	None:intergenic	30.0%
TAAAAACAGCTTCATCTTGT+CGG	-	chr5.4:18138482-18138501	None:intergenic	30.0%
TAATAAATAGGGATGATGTC+CGG	-	chr5.4:18137735-18137754	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	18136642	18140066	18136642	ID=MS.gene070118
chr5.4	mRNA	18136642	18140066	18136642	ID=MS.gene070118.t1;Parent=MS.gene070118
chr5.4	exon	18136642	18137033	18136642	ID=MS.gene070118.t1.exon1;Parent=MS.gene070118.t1
chr5.4	CDS	18136642	18137033	18136642	ID=cds.MS.gene070118.t1;Parent=MS.gene070118.t1
chr5.4	exon	18138812	18140066	18138812	ID=MS.gene070118.t1.exon2;Parent=MS.gene070118.t1
chr5.4	CDS	18138812	18140066	18138812	ID=cds.MS.gene070118.t1;Parent=MS.gene070118.t1

Gene Sequence

>MS.gene070118

ATGAAAGAGGTAACCGTTGAAGCTGAAGGTGGTGTCCTTGGCCATGGACATGGTCATGGTCATGGTCATGGTCAAGGTGGTGTAGCAGCTTCAGAAGTTGCTAAAGGTAACAACAACAATACTACTAGACCTGACTTACACAACAGAGCTGTGAAAATTTTGAGAGCTAGAGAAGCTTATAATGGTTATGAAGAAGTTGGTGAAAAACCTTCTAGATTTGAAACTTTTGGTTGGTATCTTTATGAGTTTTGCTTCTACTTTGTTCAAACTGTACTTGTTCCTGTTGTCTTTCCTCTCATTATCAGTCAGCTTCAAACTCCTCCTACTGTTTCACTTCAAGAATGGAACAAAACTCATCCTGGCACTCACTGCTCTCAAAAGGAATTTCATTTGTAAGTCCACATTTTTTTTTATATTTTTCTACATTTTTCCATGACTATATTCACTAGCACAAACCCTATTTGTAAGTTTATAGTTTTATTTATTTTTAACAATTTTGAATGTTAAGTTCTTTTATTATTTTCTACAATTTTTAATTGACCAAGTTCACTAGCAAAAAAACCCACTTAGATATTTCTAACTATTTTGAATGTTAAGATCTTTTTATTCTTTTTTACAATTTTTTCTTGACCAAGTTCACTAGCAAAAAAAACCCACTTAGAGTAAGTAACCAAGTTGTATTTTTTGAAAAATAAAAATCCTGAATTTATGTACTTTACTTAAGTAGCATTGATCTACAATATTTTGTATGATTTAGGTTTTTCAAATTTTTTGAAAAAAGTAGTAGTGGCTAGCCATGAATGGAGTGTGAAGGGTTTGTGGTTGAAAATGAAAATTAGATTTTTTTAATATTTTTTTAGAGATTTTTTTTACTAAGAAAAAAGTAAGGGGGTATGGTGTGACAAATCCAACATAGGGTTCCATAAAATAAGGTAAATTTTGTTTTTGTTAAATTAAATTTAATGAGCCGTTTGTTCCACTATAGTTTGCAATCATGAAAAGGCGTGTCCTTTATGGCTTTGTTACAAACCTACTTTACTCTTACTCAAGGGTTAAGATTCCTTTTTTCAAAAACCACTTTCATTACCCACCGGACATCATCCCTATTTATTAACCTTGGTACCATATCAACCGTTGATATATACAAGAAAATTTAAATTTAACTATTGGCCAAAAAATAAAACAAGAGAGAGAAACATTGAGAGAGAAAAAGAAAGAGAGTGATCTATGCTCGCCTCCTAGGGAGTATACAAATGTTTGTCGGACTCTCCTGAAACTCCTCTGTCATCTTTTGAAAATTTATTAAAAGATATTTAGTATTAATATTAATATTATCCTCAACGGTTAAGTCTTTAATTAAGCACTACTCCACTTGAGACTATGGTTTATTTTTTATTATACTTTCAAAATTTTATATTTAAATATTTACACTAGGTGTTTCTATGTTGCTTTTTATGTGATTTATGTACAAAAAAAATGTACACAATAATTTTGTAACAAAAGTTCATACCAAAATAAAAAAAAAGAGATTAATTTCTAAGTAGCTATAAATTTTACACATTCAATCAAATCATGTGACGCGACAACGATATTTTCTTAAGTTAGTTCCTTAAAGATCTCCAATAAATATGATTGGACCTATGTGTAAGAAACTTGTATGGTAAAAATATATGTAGTTTATTTTTTCACTAGGTGGTAAAAATTAATTATGTAAAAAGTGCTATATATTTTTTTTAGGGCATGCTATATACTTTAATATAAAGTGTAAATTTGAATTTAATTGTCGGCAGTTAGCACATCTTGGTAGTGATAGTGAGCCTAACGACAATGTATAGTGCCGACAAGATGAAGCTGTTTTTATATAAAAATAGATATGTTTTTAAACAATTATTATCTATAGGGAGTACATTTATTTTTCTTCAAGTACAATAATACAAAATGGAAATATTTCCAAAAGAAACCTTTGAAATTATTATTTGATTTGTACCAAAAAGAATTATGATTTAATCAATCAATGTTTTGAAGGGTTTATACAGTTCAAAGTTTGTAAAACAACTGTTGATCTTACTGTGTTGTTAATTTAAAAATTTATATTTTTAATGCTTAAGTATATGTTTCATTTTTTTAACCAAAGTTTACATATGTGCTAATGTACTGGTGAATTGTGCAGGTATAACAAACTCACTGGACACACCATAAGTTCAAAGTTTTCAGCATTGGAATGGACATCAATTGCTTGGGCTACAGGTCTAGCCATAGCTGCACCAATTCTTGGCTTCCTTTCCTTCCACCTCGACGGCAATTTCCCAAAACTCATCACAGTTGCAGCAACAGGTGTAGGAGTTTTCTTCTGTCTCCCGGCTGGATTCTTCAAAGTCACAGGCATCTTCATTCCCTACATTGCTGGCATCATAGCAGCCAGCACAGTTGCTAATGCAGCTCACACACAGCATCTCGGCCTCATGATCCGCGCCTTCACCGGAACAACTCTCAAGAAAGCACAGTTTTTCATTAGACAAGGTGTTTCATCCCGCCTCTCACTTCATGCTACTGCTGCTGGTTGTTTTGGCGGTGCTTTGATTTCAGCTTTCACTTACCATATGATACACGAACTCGATGAAAATAAGAGCGATATTATGAGTCTTTGGGTTGTTTCAATTTTCAGTGGTTTAATTTGGCTTGTTGGGATCTTGCATTTAGCTACAGCTACAAGTAGAACCACTGATTCGATCTCATTTTCGTCGAGGCTACACCCTTTTTCCATCTTCAAATATCCTCATGCTATTGGAGGTCTTGCTAGTGTTTTCCTTGCATCATTCACAACAATGGCTATTTTCATGGGTGGTGTGATTTTCATTGTTGGACAGCTTTGCATTAGGCCATTGCATTTGCTTTTGTTCTGGTTAACCTATTTCCTTTTCCCACTCGTTTCATTGTCGCTGCTACAACCTTTACTGCGCGTGGTTAAGATGAACTCGGTGAAGATGCAGATCGTTGGGTTCTTTTTCTCGCTTCTGTCTTCAGGGTTTGGATTCTATTACGGACACAGTCACTGGAAATGGGGACACTTGGTTCTTTTCGCTGCCATTCAGAGCACATCAACAGGGATTTTGCACGCTTTTGGAAGGGTTTTGGTGTTAGATTGTGCTCCATCGGGAAAAGAAGGTGCTTTCTCTATATGGTATGCTTGGATGAGAGCTGCAGGTTTGTGTGTCGGGTTCACGGTTGGTTCAGTTGGGCCAGGACGGATTAGGACTTCGTTCGGAGTTGCTTTTTGCACTGCTATTGCTGGAATTGTTGTGTTGCTATTTGGAAACATCAGTGATGCTGGTGGTGCTGTTGCTGCAGGGAATGTAAGTGACGATAACGAGAGAAGCTCTCCTGTGGTTTCTGGTTTAGATTCGAAAGAAGCTGCTCGAGTTTGA

Protein sequence

>MS.gene070118.t1

MKEVTVEAEGGVLGHGHGHGHGHGQGGVAASEVAKGNNNNTTRPDLHNRAVKILRAREAYNGYEEVGEKPSRFETFGWYLYEFCFYFVQTVLVPVVFPLIISQLQTPPTVSLQEWNKTHPGTHCSQKEFHLYNKLTGHTISSKFSALEWTSIAWATGLAIAAPILGFLSFHLDGNFPKLITVAATGVGVFFCLPAGFFKVTGIFIPYIAGIIAASTVANAAHTQHLGLMIRAFTGTTLKKAQFFIRQGVSSRLSLHATAAGCFGGALISAFTYHMIHELDENKSDIMSLWVVSIFSGLIWLVGILHLATATSRTTDSISFSSRLHPFSIFKYPHAIGGLASVFLASFTTMAIFMGGVIFIVGQLCIRPLHLLLFWLTYFLFPLVSLSLLQPLLRVVKMNSVKMQIVGFFFSLLSSGFGFYYGHSHWKWGHLVLFAAIQSTSTGILHAFGRVLVLDCAPSGKEGAFSIWYAWMRAAGLCVGFTVGSVGPGRIRTSFGVAFCTAIAGIVVLLFGNISDAGGAVAAGNVSDDNERSSPVVSGLDSKEAARV