AlfalfaGEDB | MS.gene070597

M. sativa cultivar XinJiangDaYe / MS.gene070597

KEGG: K01166
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0033897 GO:0097159 GO:0140098 GO:1901363
PFAM: PF00445.21

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070597.t1	XP_003613797.1	90.9	187	13	1	1	187	1	183	4.80E-93	350.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070597.t1	P42815	57.1	182	73	2	6	187	1	177	1.6e-57	223.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070597.t1	G7KFA9	90.9	187	13	1	1	187	1	183	3.4e-93	350.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050206	MS.gene070597	0.800449	1.43E-48	-1.69E-46
MS.gene050584	MS.gene070597	0.830815	2.37E-55	-1.69E-46
MS.gene050585	MS.gene070597	0.815977	7.01E-52	-1.69E-46
MS.gene050587	MS.gene070597	0.810989	8.76E-51	-1.69E-46
MS.gene051626	MS.gene070597	0.822296	2.56E-53	-1.69E-46
MS.gene051789	MS.gene070597	0.858055	1.07E-62	-1.69E-46
MS.gene052142	MS.gene070597	0.806974	6.34E-50	-1.69E-46
MS.gene053074	MS.gene070597	0.836415	9.48E-57	-1.69E-46
MS.gene053204	MS.gene070597	0.827574	1.45E-54	-1.69E-46
MS.gene054011	MS.gene070597	0.801512	8.69E-49	-1.69E-46
MS.gene05456	MS.gene070597	0.851651	7.72E-61	-1.69E-46
MS.gene054596	MS.gene070597	0.819234	1.29E-52	-1.69E-46
MS.gene055207	MS.gene070597	0.820004	8.62E-53	-1.69E-46
MS.gene059006	MS.gene070597	0.849101	4.01E-60	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070597.t1	MTR_5g041040	90.909	187	13	1	1	187	1	183	4.18e-116	329
MS.gene070597.t1	MTR_5g041010	70.053	187	51	2	1	187	1	182	5.54e-95	275
MS.gene070597.t1	MTR_5g041080	72.727	187	46	2	1	186	1	183	7.79e-94	273
MS.gene070597.t1	MTR_5g041095	69.681	188	52	2	1	187	1	184	1.63e-82	244
MS.gene070597.t1	MTR_5g040940	58.896	163	63	1	25	187	25	183	3.81e-70	213
MS.gene070597.t1	MTR_5g040960	56.831	183	73	3	7	187	6	184	5.82e-70	212
MS.gene070597.t1	MTR_8g028080	36.066	183	91	6	26	186	41	219	1.19e-21	89.7
MS.gene070597.t1	MTR_0129s0080	32.240	183	109	6	1	179	1	172	4.55e-20	84.3
MS.gene070597.t1	MTR_6g071425	34.545	165	96	6	28	187	78	235	8.00e-18	79.3
MS.gene070597.t1	MTR_2g021750	34.437	151	88	6	34	184	163	302	1.49e-15	73.6
MS.gene070597.t1	MTR_2g021830	32.530	166	96	8	23	186	1	152	1.78e-15	71.2
MS.gene070597.t1	MTR_3g030660	33.939	165	93	9	28	187	79	232	1.72e-14	70.1
MS.gene070597.t1	MTR_3g030640	34.545	165	92	9	28	187	74	227	2.15e-14	69.7
MS.gene070597.t1	MTR_4g057825	30.864	162	93	7	27	186	20	164	3.77e-13	65.5
MS.gene070597.t1	MTR_6g071505	33.533	167	93	8	27	187	70	224	3.87e-13	66.2
MS.gene070597.t1	MTR_2g021910	31.507	146	88	6	12	155	228	363	4.06e-12	64.3
MS.gene070597.t1	MTR_5g086410	30.864	162	98	8	29	187	21	171	4.22e-12	62.8
MS.gene070597.t1	MTR_5g086770	33.333	129	72	4	57	184	60	175	9.13e-12	62.0
MS.gene070597.t1	MTR_2g104370	32.432	111	62	3	86	187	52	158	1.55e-11	60.8
MS.gene070597.t1	MTR_6g090200	27.451	153	96	5	3	153	1	140	6.51e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070597.t1	AT1G26820	57.143	182	73	2	6	187	1	177	1.49e-75	226
MS.gene070597.t1	AT1G14220	56.044	182	75	2	6	187	7	183	5.58e-73	220
MS.gene070597.t1	AT2G02990	49.730	185	89	1	3	187	5	185	2.02e-65	201
MS.gene070597.t1	AT1G14210	48.087	183	86	4	9	187	6	183	1.89e-52	168
MS.gene070597.t1	AT2G39780	39.306	173	91	5	24	186	28	196	7.08e-31	113
MS.gene070597.t1	AT2G39780	31.977	172	73	5	24	186	28	164	2.08e-16	74.7

Find 0 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTTAATTGCATTGAATTTC+AGG	+	37943:7783-7802	MS.gene070597:intron	20.0%
!!	TATCAAAATCTTGAACAAAA+AGG	-	37943:6836-6855	MS.gene070597:intergenic	20.0%
!!!	ACTTTTAATATTACAGTTTG+AGG	-	37943:7171-7190	MS.gene070597:intergenic	20.0%
!!!	CTTTTAATATTACAGTTTGA+GGG	-	37943:7170-7189	MS.gene070597:intergenic	20.0%
!	AAGTGTCTTTGATAAATCTA+AGG	+	37943:7187-7206	MS.gene070597:CDS	25.0%
!	GTGGAGTAAAATTTATTATC+TGG	-	37943:7815-7834	MS.gene070597:intergenic	25.0%
!	GTTACATAAGTAATCATCAA+AGG	-	37943:7533-7552	MS.gene070597:intergenic	25.0%
!	TTAAGGACTTGGAAAATAAT+TGG	+	37943:7322-7341	MS.gene070597:CDS	25.0%
!!	GATAATAAATTTTACTCCAC+AGG	+	37943:7815-7834	MS.gene070597:CDS	25.0%
!!	TTTCTTCTATTTTATTCAGC+AGG	+	37943:6900-6919	MS.gene070597:CDS	25.0%
!!!	TTAATTTGTTAATGATGCAG+TGG	+	37943:7033-7052	MS.gene070597:intron	25.0%
	AGTGAAATACCATTTCTACT+AGG	-	37943:7363-7382	MS.gene070597:intergenic	30.0%
	ATAAACAACATACACTGACA+CGG	+	37943:7602-7621	MS.gene070597:intron	30.0%
	GTAGAAATGGTATTTCACTA+TGG	+	37943:7364-7383	MS.gene070597:CDS	30.0%
	GTGAAATACCATTTCTACTA+GGG	-	37943:7362-7381	MS.gene070597:intergenic	30.0%
	TAGTGTCGTGTCTAATATAT+GGG	-	37943:7575-7594	MS.gene070597:intergenic	30.0%
	TATTGTTACCTGCATTCTTA+AGG	-	37943:7497-7516	MS.gene070597:intergenic	30.0%
	TTAGTGTCGTGTCTAATATA+TGG	-	37943:7576-7595	MS.gene070597:intergenic	30.0%
!	CATTTTAGATGCTATACAAC+AGG	+	37943:7841-7860	MS.gene070597:CDS	30.0%
!	TATTTTCCAAGTCCTTAATG+AGG	-	37943:7320-7339	MS.gene070597:intergenic	30.0%
!!	TTTGAATCTAAAGTGTTGAG+AGG	+	37943:7736-7755	MS.gene070597:intron	30.0%
	AATCAAAATCCTGAGCAGAA+AGG	-	37943:6882-6901	MS.gene070596:intergenic	35.0%
	AGAATGCAGGTAACAATACA+TGG	+	37943:7499-7518	MS.gene070597:CDS	35.0%
	ATAGATCTCAGACCTCATTA+AGG	+	37943:7305-7324	MS.gene070597:intron	35.0%
	CATTCTTAAGGATCTGAAGA+AGG	-	37943:7485-7504	MS.gene070597:intergenic	35.0%
	CGTGTCTAATATATGGGTAT+AGG	-	37943:7569-7588	MS.gene070597:intergenic	35.0%
	GATGATCCATCATTGAAGTT+AGG	-	37943:7146-7165	MS.gene070597:intergenic	35.0%
	GCAATGGTAAAATCTGATGT+CGG	-	37943:7113-7132	MS.gene070597:intergenic	35.0%
	TCACATGAATGGATGAAACA+TGG	+	37943:7387-7406	MS.gene070597:CDS	35.0%
	TTTCACTATGGTCACATGAA+TGG	+	37943:7376-7395	MS.gene070597:CDS	35.0%
!	ACATCAGATTTTACCATTGC+TGG	+	37943:7113-7132	MS.gene070597:CDS	35.0%
!	AGCATCTAAAATGTTACCTG+TGG	-	37943:7834-7853	MS.gene070597:intergenic	35.0%
!	ATTTTACCATTGCTGGACTT+AGG	+	37943:7120-7139	MS.gene070597:CDS	35.0%
!!!	AAAATCTGATGTCGGTTTTC+CGG	-	37943:7105-7124	MS.gene070597:intergenic	35.0%
	ATGCTATACAACAGGCTACA+GGG	+	37943:7849-7868	MS.gene070597:CDS	40.0%
	CTTAGGCCTAACTTCAATGA+TGG	+	37943:7137-7156	MS.gene070597:CDS	40.0%
	CTTCAGATCCTTAAGAATGC+AGG	+	37943:7486-7505	MS.gene070597:CDS	40.0%
	ACCATCAGACGAGACAAGTA+CGG	-	37943:7701-7720	MS.gene070596:intergenic	45.0%
	CTCAGACCTCATTAAGGACT+TGG	+	37943:7311-7330	MS.gene070597:CDS	45.0%
	GATGCTATACAACAGGCTAC+AGG	+	37943:7848-7867	MS.gene070597:CDS	45.0%
	TGTTCAAAGCCTTTCTGCTC+AGG	+	37943:6870-6889	MS.gene070597:CDS	45.0%
	TTGAGCTGCCCTAGTAGAAA+TGG	+	37943:7351-7370	MS.gene070597:CDS	45.0%
	TTGTTAATGATGCAGTGGCC+AGG	+	37943:7038-7057	MS.gene070597:intron	45.0%
	TTTGAGTCACAGATTGCTCC+TGG	-	37943:7059-7078	MS.gene070597:intergenic	45.0%
!!!	AGCTGCTGTTTTCCGAAAAC+CGG	+	37943:7083-7102	MS.gene070597:CDS	45.0%
!!!	GATGTCGGTTTTCCGGTTTT+CGG	-	37943:7098-7117	MS.gene070597:intergenic	45.0%
!!	TTAAAAAAAATGAATTTAAT+TGG	+	37943:7213-7232	MS.gene070597:intron	5.0%
	ACCGTACTTGTCTCGTCTGA+TGG	+	37943:7697-7716	MS.gene070597:intron	50.0%
	CTACTAGGGCAGCTCAAAGA+TGG	-	37943:7348-7367	MS.gene070597:intergenic	50.0%
	GTTAGGCCTAAGTCCAGCAA+TGG	-	37943:7129-7148	MS.gene070597:intergenic	50.0%
	GGTGTCTGACTGACACATCG+TGG	-	37943:7680-7699	MS.gene070597:intergenic	55.0%
!	CAGGCTACAGGGTATTCCCC+AGG	+	37943:7860-7879	MS.gene070597:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
37943	gene	6814	7890	6814	ID=MS.gene070597
37943	mRNA	6814	7890	6814	ID=MS.gene070597.t1;Parent=MS.gene070597
37943	exon	6814	6921	6814	ID=MS.gene070597.t1.exon1;Parent=MS.gene070597.t1
37943	CDS	6814	6921	6814	ID=cds.MS.gene070597.t1;Parent=MS.gene070597.t1
37943	exon	7053	7208	7053	ID=MS.gene070597.t1.exon2;Parent=MS.gene070597.t1
37943	CDS	7053	7208	7053	ID=cds.MS.gene070597.t1;Parent=MS.gene070597.t1
37943	exon	7309	7520	7309	ID=MS.gene070597.t1.exon3;Parent=MS.gene070597.t1
37943	CDS	7309	7520	7309	ID=cds.MS.gene070597.t1;Parent=MS.gene070597.t1
37943	exon	7805	7890	7805	ID=MS.gene070597.t1.exon4;Parent=MS.gene070597.t1
37943	CDS	7805	7890	7805	ID=cds.MS.gene070597.t1;Parent=MS.gene070597.t1

Gene Sequence

>MS.gene070597

ATGAAACTCAACAACATTTCCTTTTTGTTCAAGATTTTGATACTTCAATATCTTTCTGTTCAAAGCCTTTCTGCTCAGGATTTTGATTTCTTCTATTTTATTCAGCAGGTAATTAAATCATGAGTAGATAATCATGAATATAGTGTATCATTTAATTCTTATAAAAAAAATAGTCGATTTATATTTACAGTTTATTCTGATTCTTCAGTATTACACTGTTTAATTTGTTAATGATGCAGTGGCCAGGAGCAATCTGTGACTCAAAGCAGAGCTGCTGTTTTCCGAAAACCGGAAAACCGACATCAGATTTTACCATTGCTGGACTTAGGCCTAACTTCAATGATGGATCATCTCCCTCAAACTGTAATATTAAAAGTGTCTTTGATAAATCTAAGGTATTTAAAAAAAATGAATTTAATTGGTCTTTATGATTTTAGTGTACTATTTCTCTGCTAAAAAACTCATCTATGAGTCATATTTAATTTGTATATATAGATCTCAGACCTCATTAAGGACTTGGAAAATAATTGGCCATCTTTGAGCTGCCCTAGTAGAAATGGTATTTCACTATGGTCACATGAATGGATGAAACATGGTACATGTTCAGAATCTAAGCTTACTCAACATGACTACTTTCAAACAGCTATCAAACTCAAGAGAAAACTGAACCTTCTTCAGATCCTTAAGAATGCAGGTAACAATACATGGTTTTAAAGCCTTTGATGATTACTTATGTAACAATGACATATACACCTATACCCATATATTAGACACGACACTAACATGACATAAACAACATACACTGACACGGTACAGTGTACACAACACTGACACATGTGTCAAAGTTGTGTATGTGTCAGACACCACGATGTGTCAGTCAGACACCGTACTTGTCTCGTCTGATGGTGTCTGACTGACACGCTTTGAATCTAAAGTGTTGAGAGGTATATATTTGCAAAATTTCTAATCATTTAATTGCATTGAATTTCAGGATTGAACCAGATAATAAATTTTACTCCACAGGTAACATTTTAGATGCTATACAACAGGCTACAGGGTATTCCCCAGGAATAGAAT

Protein sequence

>MS.gene070597.t1

MKLNNISFLFKILILQYLSVQSLSAQDFDFFYFIQQWPGAICDSKQSCCFPKTGKPTSDFTIAGLRPNFNDGSSPSNCNIKSVFDKSKISDLIKDLENNWPSLSCPSRNGISLWSHEWMKHGTCSESKLTQHDYFQTAIKLKRKLNLLQILKNAGNNTWIEPDNKFYSTGNILDAIQQATGYSPGIE