Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07124.t1 | XP_003625896.1 | 99.1 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 1.10E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07124.t1 | Q9LMU0 | 83.5 | 315 | 52 | 0 | 6 | 320 | 11 | 325 | 4.0e-157 | 555.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07124.t1 | G7KRU3 | 99.1 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 8.0e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050818 | MS.gene07124 | 0.82951 | 4.94E-55 | -1.69E-46 |
| MS.gene051885 | MS.gene07124 | 0.807209 | 5.65E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56125 | MS.gene07124 | PPI |
| MS.gene030057 | MS.gene07124 | PPI |
| MS.gene20834 | MS.gene07124 | PPI |
| MS.gene92492 | MS.gene07124 | PPI |
| MS.gene05880 | MS.gene07124 | PPI |
| MS.gene017129 | MS.gene07124 | PPI |
| MS.gene038363 | MS.gene07124 | PPI |
| MS.gene07124 | MS.gene43111 | PPI |
| MS.gene07262 | MS.gene07124 | PPI |
| MS.gene05958 | MS.gene07124 | PPI |
| MS.gene049084 | MS.gene07124 | PPI |
| MS.gene015787 | MS.gene07124 | PPI |
| MS.gene07124 | MS.gene061388 | PPI |
| MS.gene062351 | MS.gene07124 | PPI |
| MS.gene20783 | MS.gene07124 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07124.t1 | MTR_7g108490 | 99.062 | 320 | 3 | 0 | 1 | 320 | 1 | 320 | 0.0 | 657 |
| MS.gene07124.t1 | MTR_7g108490 | 99.062 | 320 | 2 | 1 | 1 | 320 | 1 | 319 | 0.0 | 653 |
| MS.gene07124.t1 | MTR_1g080950 | 24.242 | 330 | 223 | 8 | 9 | 320 | 22 | 342 | 2.47e-21 | 93.6 |
| MS.gene07124.t1 | MTR_1g080950 | 24.242 | 330 | 223 | 8 | 9 | 320 | 58 | 378 | 2.91e-21 | 94.0 |
| MS.gene07124.t1 | MTR_7g115080 | 24.383 | 324 | 215 | 9 | 16 | 320 | 30 | 342 | 1.24e-19 | 89.0 |
| MS.gene07124.t1 | MTR_7g115080 | 24.383 | 324 | 215 | 9 | 16 | 320 | 64 | 376 | 1.39e-19 | 89.0 |
| MS.gene07124.t1 | MTR_7g115080 | 24.383 | 324 | 215 | 9 | 16 | 320 | 43 | 355 | 1.51e-19 | 88.6 |
| MS.gene07124.t1 | MTR_1g009600 | 28.649 | 185 | 116 | 6 | 137 | 317 | 148 | 320 | 1.02e-12 | 68.9 |
| MS.gene07124.t1 | MTR_4g063600 | 24.051 | 316 | 208 | 9 | 10 | 307 | 27 | 328 | 1.99e-12 | 67.4 |
| MS.gene07124.t1 | MTR_4g063600 | 23.418 | 316 | 207 | 9 | 10 | 307 | 27 | 325 | 1.24e-11 | 65.1 |
| MS.gene07124.t1 | MTR_5g009160 | 24.340 | 341 | 210 | 11 | 17 | 317 | 6 | 338 | 4.37e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07124.t1 | AT1G17890 | 83.492 | 315 | 52 | 0 | 6 | 320 | 11 | 325 | 0.0 | 563 |
| MS.gene07124.t1 | AT1G17890 | 83.492 | 315 | 52 | 0 | 6 | 320 | 3 | 317 | 0.0 | 563 |
| MS.gene07124.t1 | AT1G17890 | 83.492 | 315 | 52 | 0 | 6 | 320 | 3 | 317 | 0.0 | 563 |
| MS.gene07124.t1 | AT1G73250 | 83.819 | 309 | 50 | 0 | 10 | 318 | 12 | 320 | 0.0 | 558 |
| MS.gene07124.t1 | AT5G28840 | 23.939 | 330 | 224 | 8 | 9 | 320 | 22 | 342 | 3.50e-20 | 90.5 |
| MS.gene07124.t1 | AT5G28840 | 23.939 | 330 | 224 | 8 | 9 | 320 | 22 | 342 | 3.50e-20 | 90.5 |
| MS.gene07124.t1 | AT3G14790 | 29.282 | 181 | 114 | 7 | 140 | 317 | 153 | 322 | 1.83e-14 | 74.3 |
| MS.gene07124.t1 | AT3G14790 | 29.282 | 181 | 114 | 7 | 140 | 317 | 156 | 325 | 1.88e-14 | 74.3 |
| MS.gene07124.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 26 | 327 | 4.31e-13 | 69.3 |
| MS.gene07124.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 26 | 327 | 4.31e-13 | 69.3 |
| MS.gene07124.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 26 | 327 | 4.31e-13 | 69.3 |
| MS.gene07124.t1 | AT3G46440 | 24.214 | 318 | 205 | 10 | 10 | 307 | 24 | 325 | 5.38e-13 | 69.3 |
| MS.gene07124.t1 | AT3G46440 | 24.214 | 318 | 205 | 10 | 10 | 307 | 24 | 325 | 5.38e-13 | 69.3 |
| MS.gene07124.t1 | AT2G28760 | 24.367 | 316 | 207 | 9 | 10 | 307 | 57 | 358 | 5.51e-13 | 69.3 |
| MS.gene07124.t1 | AT1G53500 | 27.778 | 180 | 118 | 5 | 140 | 317 | 155 | 324 | 1.89e-12 | 68.6 |
| MS.gene07124.t1 | AT3G53520 | 26.282 | 312 | 199 | 11 | 13 | 307 | 118 | 415 | 1.12e-11 | 65.9 |
| MS.gene07124.t1 | AT1G64440 | 22.093 | 344 | 218 | 11 | 15 | 317 | 3 | 337 | 2.80e-11 | 63.9 |
Find 92 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAAGATGCTTTGCTTAC+TGG | 0.149882 | 7.1:-5365948 | MS.gene07124:CDS |
| ATTGGTTGAGGTGCAAATTT+AGG | 0.159427 | 7.1:+5365972 | None:intergenic |
| GAGCTATCCATCAGCTTTCT+TGG | 0.194906 | 7.1:+5365492 | None:intergenic |
| CACAAGTGGGATGCAATTTC+AGG | 0.203663 | 7.1:-5365846 | MS.gene07124:CDS |
| AACAATAACCCTTACTGTTT+TGG | 0.240454 | 7.1:+5367037 | None:intergenic |
| CCATTCATTTGTGGGCTCTA+AGG | 0.251483 | 7.1:+5365923 | None:intergenic |
| ATTCTCTAAGTACCACTTAT+AGG | 0.298342 | 7.1:+5365410 | None:intergenic |
| GAGGTAGTGGTGTGGGGTAC+GGG | 0.306076 | 7.1:-5365714 | MS.gene07124:CDS |
| CCAGTAAGCAAAGCATCTTC+AGG | 0.327068 | 7.1:+5365948 | None:intergenic |
| TGGAAAGGAGGTTACAATTA+AGG | 0.329079 | 7.1:-5365592 | MS.gene07124:CDS |
| GGAGGTTACAATTAAGGAAT+TGG | 0.338695 | 7.1:-5365586 | MS.gene07124:CDS |
| GGGATGCCGACCAACTTATA+CGG | 0.369504 | 7.1:-5365825 | MS.gene07124:CDS |
| TTGGTTGAGGTGCAAATTTA+GGG | 0.370655 | 7.1:+5365973 | None:intergenic |
| CATTCATTTGTGGGCTCTAA+GGG | 0.394688 | 7.1:+5365924 | None:intergenic |
| CAATGACATTGGTCTGGATC+TGG | 0.398176 | 7.1:+5366054 | None:intergenic |
| AGCTTTCTTGGTGTCCCATC+GGG | 0.401801 | 7.1:+5365504 | None:intergenic |
| AGGTAGTGGTGTGGGGTACG+GGG | 0.403323 | 7.1:-5365713 | MS.gene07124:CDS |
| GGAGGTAGTGGTGTGGGGTA+CGG | 0.416144 | 7.1:-5365715 | MS.gene07124:CDS |
| TCGGGATGGAAATTATCATT+TGG | 0.418888 | 7.1:+5365801 | None:intergenic |
| TCCGGTCATCGAGGTCTTGT+TGG | 0.420739 | 7.1:-5366281 | MS.gene07124:CDS |
| AGCTCAAAACTTGCAGCCCT+TGG | 0.432660 | 7.1:-5365474 | MS.gene07124:CDS |
| TATGCCATTGCCAAGATTGC+CGG | 0.438517 | 7.1:-5365900 | MS.gene07124:CDS |
| CAGCTTTCTTGGTGTCCCAT+CGG | 0.440823 | 7.1:+5365503 | None:intergenic |
| GGAGTTGAGCATTTGAATGT+AGG | 0.457314 | 7.1:-5365618 | MS.gene07124:CDS |
| GGGTACGGGGAGTCCACTTA+GGG | 0.460892 | 7.1:-5365700 | MS.gene07124:CDS |
| TGCAAAGGAGGTAGTGGTGT+GGG | 0.465275 | 7.1:-5365721 | MS.gene07124:CDS |
| TCATCGAGGTCTTGTTGGTT+CGG | 0.467475 | 7.1:-5366276 | MS.gene07124:CDS |
| ACCAACAAGACCTCGATGAC+CGG | 0.471640 | 7.1:+5366280 | None:intergenic |
| GGCATGGATACCACCAACTT+TGG | 0.472668 | 7.1:+5366115 | None:intergenic |
| AGCAAAGCATCTTCAGGGAT+TGG | 0.474197 | 7.1:+5365954 | None:intergenic |
| GGGGTACGGGGAGTCCACTT+AGG | 0.476642 | 7.1:-5365701 | MS.gene07124:CDS |
| CAGAATCAATGACATTGGTC+TGG | 0.477646 | 7.1:+5366048 | None:intergenic |
| AGGCTTCGTGGATGCAAAGA+AGG | 0.478791 | 7.1:+5366160 | None:intergenic |
| GAGTTGAGCATTTGAATGTA+GGG | 0.483402 | 7.1:-5365617 | MS.gene07124:CDS |
| ATCATTTGGTCCGTATAAGT+TGG | 0.484602 | 7.1:+5365815 | None:intergenic |
| ATGGCATACCATTCATTTGT+GGG | 0.486092 | 7.1:+5365915 | None:intergenic |
| CAAAACTTGCAGCCCTTGGT+TGG | 0.488475 | 7.1:-5365470 | MS.gene07124:CDS |
| ATCAGCAGGATAGGTGTTGT+TGG | 0.496759 | 7.1:+5366094 | None:intergenic |
| AATGACAAACTCAGGCTTCG+TGG | 0.498096 | 7.1:+5366148 | None:intergenic |
| GCATCTTCAGGGATTGGTTG+AGG | 0.503925 | 7.1:+5365960 | None:intergenic |
| ATGCCATTGCCAAGATTGCC+GGG | 0.506721 | 7.1:-5365899 | MS.gene07124:CDS |
| GAATGTAGGGAGTGGAAAGG+AGG | 0.511105 | 7.1:-5365604 | MS.gene07124:CDS |
| CCATCCTTAAGTGAGACTTT+CGG | 0.511365 | 7.1:+5365444 | None:intergenic |
| GTTCGCAAGCTGACTCAACT+CGG | 0.514389 | 7.1:-5366248 | MS.gene07124:CDS |
| CAGGATAGGTGTTGTTGGCA+TGG | 0.526132 | 7.1:+5366099 | None:intergenic |
| ACAAGTGGGATGCAATTTCA+GGG | 0.528356 | 7.1:-5365845 | MS.gene07124:CDS |
| CCTTAGAGCCCACAAATGAA+TGG | 0.530586 | 7.1:-5365923 | MS.gene07124:CDS |
| ATTGTAGCTGCTGCCAAAGT+TGG | 0.538288 | 7.1:-5366128 | MS.gene07124:CDS |
| GATCCCGGCAATCTTGGCAA+TGG | 0.538775 | 7.1:+5365896 | None:intergenic |
| GGTCTGGATCTGGAGGTTGA+TGG | 0.540673 | 7.1:+5366064 | None:intergenic |
| CCGAAAGTCTCACTTAAGGA+TGG | 0.543510 | 7.1:-5365444 | MS.gene07124:CDS |
| TGAAACCTCCTCATCAAAGC+AGG | 0.544927 | 7.1:+5365762 | None:intergenic |
| CAACGGTGCAAAGGAGGTAG+TGG | 0.546785 | 7.1:-5365727 | MS.gene07124:CDS |
| CAGTAAGCAAAGCATCTTCA+GGG | 0.549758 | 7.1:+5365949 | None:intergenic |
| GAGTCAATGAAGGAAGTTGT+GGG | 0.556089 | 7.1:-5365561 | MS.gene07124:CDS |
| TTGATGGCAATGAAATCAGC+AGG | 0.556836 | 7.1:+5366080 | None:intergenic |
| GGAATTGGCTGAGTCAATGA+AGG | 0.558355 | 7.1:-5365571 | MS.gene07124:CDS |
| TTCGCAAGCTGACTCAACTC+GGG | 0.561081 | 7.1:-5366247 | MS.gene07124:CDS |
| AATGGCATACCATTCATTTG+TGG | 0.562972 | 7.1:+5365914 | None:intergenic |
| AGATGCAGTTGTCTTTATGA+TGG | 0.567147 | 7.1:-5365652 | MS.gene07124:CDS |
| GACACCGAAAGTCTCACTTA+AGG | 0.568664 | 7.1:-5365448 | MS.gene07124:CDS |
| GGCAATGAAATCAGCAGGAT+AGG | 0.569157 | 7.1:+5366085 | None:intergenic |
| TGGGACACCAAGAAAGCTGA+TGG | 0.571175 | 7.1:-5365499 | MS.gene07124:CDS |
| GAGCATTTGAATGTAGGGAG+TGG | 0.573638 | 7.1:-5365612 | MS.gene07124:CDS |
| GTAGCTGCTGCCAAAGTTGG+TGG | 0.582192 | 7.1:-5366125 | MS.gene07124:CDS |
| ATTGATTCTGCTTATCGCAA+TGG | 0.583179 | 7.1:-5366035 | MS.gene07124:CDS |
| GAGGAGGTTTCATGAGGCAA+AGG | 0.584336 | 7.1:-5365751 | MS.gene07124:CDS |
| TTGAGTCAGCTTGCGAACAA+TGG | 0.584587 | 7.1:+5366253 | None:intergenic |
| CATACAGAATTCAGCACAAG+TGG | 0.592816 | 7.1:-5365860 | MS.gene07124:CDS |
| CGAAAGTCTCACTTAAGGAT+GGG | 0.593671 | 7.1:-5365443 | MS.gene07124:CDS |
| GCAGCTACAATGACAAACTC+AGG | 0.596147 | 7.1:+5366140 | None:intergenic |
| GCAAAGGAGGTAGTGGTGTG+GGG | 0.596327 | 7.1:-5365720 | MS.gene07124:CDS |
| TTTGGTCCGTATAAGTTGGT+CGG | 0.596979 | 7.1:+5365819 | None:intergenic |
| GACTTTCGGTGTCCAACCAA+GGG | 0.600503 | 7.1:+5365458 | None:intergenic |
| GGCAAAGGTCAACGGTGCAA+AGG | 0.605297 | 7.1:-5365736 | MS.gene07124:CDS |
| TTTCATGAGGCAAAGGTCAA+CGG | 0.606919 | 7.1:-5365744 | MS.gene07124:CDS |
| AGACTTTCGGTGTCCAACCA+AGG | 0.607421 | 7.1:+5365457 | None:intergenic |
| ATAAGCAGAATCAATGACAT+TGG | 0.607720 | 7.1:+5366043 | None:intergenic |
| TGGGATAGTACTAAGCCCGA+TGG | 0.610894 | 7.1:-5365519 | MS.gene07124:CDS |
| GTGCAAAGGAGGTAGTGGTG+TGG | 0.615768 | 7.1:-5365722 | MS.gene07124:CDS |
| GGCTTGTTGATACCTATAAG+TGG | 0.616689 | 7.1:-5365422 | MS.gene07124:CDS |
| TTTGAATGTAGGGAGTGGAA+AGG | 0.619261 | 7.1:-5365607 | MS.gene07124:CDS |
| AAAGGTCAACGGTGCAAAGG+AGG | 0.620001 | 7.1:-5365733 | MS.gene07124:CDS |
| TCTAATCTTAAGAACTCATG+CGG | 0.625073 | 7.1:-5366216 | MS.gene07124:CDS |
| TTTGATGAGGAGGTTTCATG+AGG | 0.636802 | 7.1:-5365757 | MS.gene07124:CDS |
| GGGATAGTACTAAGCCCGAT+GGG | 0.640020 | 7.1:-5365518 | MS.gene07124:CDS |
| AAATTTAGGGTAAATGCAAG+AGG | 0.655370 | 7.1:+5365986 | None:intergenic |
| TGACATTGGTCTGGATCTGG+AGG | 0.655686 | 7.1:+5366057 | None:intergenic |
| TGAGTCAATGAAGGAAGTTG+TGG | 0.655904 | 7.1:-5365562 | MS.gene07124:CDS |
| ATTCATTTGTGGGCTCTAAG+GGG | 0.661471 | 7.1:+5365925 | None:intergenic |
| TTTATGATGGAAAAGTACAG+TGG | 0.685676 | 7.1:-5365639 | MS.gene07124:CDS |
| ATACAGAATTCAGCACAAGT+GGG | 0.695878 | 7.1:-5365859 | MS.gene07124:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCTCAAATTACTAC+CGG | - | chr7.1:5365622-5365641 | MS.gene07124:CDS | 20.0% |
| ! | AACATTTAATGTGATCACAT+TGG | + | chr7.1:5365604-5365623 | None:intergenic | 25.0% |
| ! | TGGTTTAATATGGTATCAAT+AGG | - | chr7.1:5365816-5365835 | MS.gene07124:CDS | 25.0% |
| !! | AATTTTACTAGATTCAAAGG+TGG | - | chr7.1:5365932-5365951 | MS.gene07124:CDS | 25.0% |
| !! | CAGAATTTTACTAGATTCAA+AGG | - | chr7.1:5365929-5365948 | MS.gene07124:CDS | 25.0% |
| !!! | CATTTGCTTTTGGTTTAATA+TGG | - | chr7.1:5365806-5365825 | MS.gene07124:CDS | 25.0% |
| !!! | GGTGAGAGAATTATTTTTAT+TGG | - | chr7.1:5366042-5366061 | MS.gene07124:CDS | 25.0% |
| ATAACAATGCTAACTCATTC+TGG | - | chr7.1:5365988-5366007 | MS.gene07124:CDS | 30.0% | |
| ATAAGCAGAATCAATGACAT+TGG | + | chr7.1:5366403-5366422 | None:intergenic | 30.0% | |
| ATTCTCTAAGTACCACTTAT+AGG | + | chr7.1:5367036-5367055 | None:intergenic | 30.0% | |
| TCTAATCTTAAGAACTCATG+CGG | - | chr7.1:5366227-5366246 | MS.gene07124:CDS | 30.0% | |
| ! | AAATTTAGGGTAAATGCAAG+AGG | + | chr7.1:5366460-5366479 | None:intergenic | 30.0% |
| ! | AACAATAACCCTTACTGTTT+TGG | + | chr7.1:5365409-5365428 | None:intergenic | 30.0% |
| ! | ATGTCTTTGATCAAAAGTGT+CGG | + | chr7.1:5365561-5365580 | None:intergenic | 30.0% |
| ! | TTTATGATGGAAAAGTACAG+TGG | - | chr7.1:5366804-5366823 | MS.gene07124:intron | 30.0% |
| !! | TTAGCATTGTTATTGACTCT+TGG | + | chr7.1:5365981-5366000 | None:intergenic | 30.0% |
| !! | TTTTGATGATAAATCTGCCA+AGG | - | chr7.1:5366131-5366150 | MS.gene07124:CDS | 30.0% |
| !!! | GCTAAGAAGCTTTTGTTTTT+GGG | - | chr7.1:5366432-5366451 | MS.gene07124:intron | 30.0% |
| !!! | TGCTAAGAAGCTTTTGTTTT+TGG | - | chr7.1:5366431-5366450 | MS.gene07124:intron | 30.0% |
| AAAGATAGCGTAGTTCGTAT+AGG | + | chr7.1:5365896-5365915 | None:intergenic | 35.0% | |
| AATGGCATACCATTCATTTG+TGG | + | chr7.1:5366532-5366551 | None:intergenic | 35.0% | |
| ACCAAAAGCAAATGAACTCA+AGG | + | chr7.1:5365800-5365819 | None:intergenic | 35.0% | |
| AGATGCAGTTGTCTTTATGA+TGG | - | chr7.1:5366791-5366810 | MS.gene07124:intron | 35.0% | |
| ATACAGAATTCAGCACAAGT+GGG | - | chr7.1:5366584-5366603 | MS.gene07124:intron | 35.0% | |
| ATCATTTGGTCCGTATAAGT+TGG | + | chr7.1:5366631-5366650 | None:intergenic | 35.0% | |
| ATGGCATACCATTCATTTGT+GGG | + | chr7.1:5366531-5366550 | None:intergenic | 35.0% | |
| ATTGGTTGAGGTGCAAATTT+AGG | + | chr7.1:5366474-5366493 | None:intergenic | 35.0% | |
| CCAAAAGCAAATGAACTCAA+GGG | + | chr7.1:5365799-5365818 | None:intergenic | 35.0% | |
| GAGTTGAGCATTTGAATGTA+GGG | - | chr7.1:5366826-5366845 | MS.gene07124:intron | 35.0% | |
| GGAGGTTACAATTAAGGAAT+TGG | - | chr7.1:5366857-5366876 | MS.gene07124:intron | 35.0% | |
| TATAATCAGGACCTACAAAC+TGG | + | chr7.1:5365855-5365874 | None:intergenic | 35.0% | |
| TCGAAAAAAACGCTCAATTG+CGG | + | chr7.1:5365738-5365757 | None:intergenic | 35.0% | |
| TCGGGATGGAAATTATCATT+TGG | + | chr7.1:5366645-5366664 | None:intergenic | 35.0% | |
| TGCCCTAAAAAAAGAAGAGA+GGG | - | chr7.1:5366021-5366040 | MS.gene07124:CDS | 35.0% | |
| TGGAAAGGAGGTTACAATTA+AGG | - | chr7.1:5366851-5366870 | MS.gene07124:intron | 35.0% | |
| TTGCCCTAAAAAAAGAAGAG+AGG | - | chr7.1:5366020-5366039 | MS.gene07124:CDS | 35.0% | |
| TTGGTTGAGGTGCAAATTTA+GGG | + | chr7.1:5366473-5366492 | None:intergenic | 35.0% | |
| ! | AGGCAAAACGTGTGAATTTT+CGG | + | chr7.1:5366664-5366683 | None:intergenic | 35.0% |
| ! | ATTGATTCTGCTTATCGCAA+TGG | - | chr7.1:5366408-5366427 | MS.gene07124:intron | 35.0% |
| !!! | CACCCTCTCTTCTTTTTTTA+GGG | + | chr7.1:5366026-5366045 | None:intergenic | 35.0% |
| !!! | TAGCTGTTTTTCCAGTTTGT+AGG | - | chr7.1:5365841-5365860 | MS.gene07124:CDS | 35.0% |
| !!! | TCACCCTCTCTTCTTTTTTT+AGG | + | chr7.1:5366027-5366046 | None:intergenic | 35.0% |
| ACAAGTGGGATGCAATTTCA+GGG | - | chr7.1:5366598-5366617 | MS.gene07124:intron | 40.0% | |
| ATGACCGGAAACAAAAACCT+TGG | + | chr7.1:5366151-5366170 | None:intergenic | 40.0% | |
| ATGGGAAGCCAAAACAGTAA+GGG | - | chr7.1:5365398-5365417 | MS.gene07124:CDS | 40.0% | |
| CAGAATCAATGACATTGGTC+TGG | + | chr7.1:5366398-5366417 | None:intergenic | 40.0% | |
| CATACAGAATTCAGCACAAG+TGG | - | chr7.1:5366583-5366602 | MS.gene07124:intron | 40.0% | |
| CCATCCTTAAGTGAGACTTT+CGG | + | chr7.1:5367002-5367021 | None:intergenic | 40.0% | |
| CGAAAGTCTCACTTAAGGAT+GGG | - | chr7.1:5367000-5367019 | MS.gene07124:intron | 40.0% | |
| CTAAAGCAATCGCTTCTGAA+AGG | - | chr7.1:5365696-5365715 | MS.gene07124:CDS | 40.0% | |
| GAGTCAATGAAGGAAGTTGT+GGG | - | chr7.1:5366882-5366901 | MS.gene07124:intron | 40.0% | |
| GGAGTTGAGCATTTGAATGT+AGG | - | chr7.1:5366825-5366844 | MS.gene07124:intron | 40.0% | |
| GTCAACGAGAGCTTATAATC+AGG | + | chr7.1:5365868-5365887 | None:intergenic | 40.0% | |
| TGAGTCAATGAAGGAAGTTG+TGG | - | chr7.1:5366881-5366900 | MS.gene07124:intron | 40.0% | |
| TTTCATGAGGCAAAGGTCAA+CGG | - | chr7.1:5366699-5366718 | MS.gene07124:intron | 40.0% | |
| TTTGAATGTAGGGAGTGGAA+AGG | - | chr7.1:5366836-5366855 | MS.gene07124:intron | 40.0% | |
| TTTGATGAGGAGGTTTCATG+AGG | - | chr7.1:5366686-5366705 | MS.gene07124:intron | 40.0% | |
| ! | CACATTGGTTGAAGTTGTGT+CGG | + | chr7.1:5365589-5365608 | None:intergenic | 40.0% |
| ! | CAGTAAGCAAAGCATCTTCA+GGG | + | chr7.1:5366497-5366516 | None:intergenic | 40.0% |
| ! | CATTCATTTGTGGGCTCTAA+GGG | + | chr7.1:5366522-5366541 | None:intergenic | 40.0% |
| ! | CCCTTGAGTTCATTTGCTTT+TGG | - | chr7.1:5365796-5365815 | MS.gene07124:CDS | 40.0% |
| ! | GGCAAAACGTGTGAATTTTC+GGG | + | chr7.1:5366663-5366682 | None:intergenic | 40.0% |
| ! | GTTTTTGCACGTTGACGATT+TGG | - | chr7.1:5366767-5366786 | MS.gene07124:intron | 40.0% |
| ! | TTGATGGCAATGAAATCAGC+AGG | + | chr7.1:5366366-5366385 | None:intergenic | 40.0% |
| !! | AAACGTGTGAATTTTCGGGA+TGG | + | chr7.1:5366659-5366678 | None:intergenic | 40.0% |
| !! | AAGGAAGTTGTGGGTTTTGA+AGG | - | chr7.1:5366891-5366910 | MS.gene07124:intron | 40.0% |
| !! | ATTCATTTGTGGGCTCTAAG+GGG | + | chr7.1:5366521-5366540 | None:intergenic | 40.0% |
| !! | GGCTTGTTGATACCTATAAG+TGG | - | chr7.1:5367021-5367040 | MS.gene07124:intron | 40.0% |
| !! | TCTGCCAAGGTTTTTGTTTC+CGG | - | chr7.1:5366144-5366163 | MS.gene07124:CDS | 40.0% |
| !! | TGCTTGACACATTTTGATCC+CGG | + | chr7.1:5366565-5366584 | None:intergenic | 40.0% |
| !! | TTTGGTCCGTATAAGTTGGT+CGG | + | chr7.1:5366627-5366646 | None:intergenic | 40.0% |
| !! | TTTTGAAGGCGATCTCGTTT+GGG | - | chr7.1:5366905-5366924 | MS.gene07124:intron | 40.0% |
| AATGAACTCAAGGGCTACCT+CGG | + | chr7.1:5365790-5365809 | None:intergenic | 45.0% | |
| AATGACAAACTCAGGCTTCG+TGG | + | chr7.1:5366298-5366317 | None:intergenic | 45.0% | |
| ACGTGCAAAAACTCCCTAAG+TGG | + | chr7.1:5366759-5366778 | None:intergenic | 45.0% | |
| AGCGTAGTTCGTATAGGTTG+TGG | + | chr7.1:5365890-5365909 | None:intergenic | 45.0% | |
| ATTGTAGCTGCTGCCAAAGT+TGG | - | chr7.1:5366315-5366334 | MS.gene07124:CDS | 45.0% | |
| CACAAGTGGGATGCAATTTC+AGG | - | chr7.1:5366597-5366616 | MS.gene07124:intron | 45.0% | |
| CCATTCATTTGTGGGCTCTA+AGG | + | chr7.1:5366523-5366542 | None:intergenic | 45.0% | |
| CCGAAAGTCTCACTTAAGGA+TGG | - | chr7.1:5366999-5367018 | MS.gene07124:intron | 45.0% | |
| CCTGAAGATGCTTTGCTTAC+TGG | - | chr7.1:5366495-5366514 | MS.gene07124:intron | 45.0% | |
| CCTTAGAGCCCACAAATGAA+TGG | - | chr7.1:5366520-5366539 | MS.gene07124:intron | 45.0% | |
| GACACCGAAAGTCTCACTTA+AGG | - | chr7.1:5366995-5367014 | MS.gene07124:intron | 45.0% | |
| GAGCATTTGAATGTAGGGAG+TGG | - | chr7.1:5366831-5366850 | MS.gene07124:intron | 45.0% | |
| GAGCTATCCATCAGCTTTCT+TGG | + | chr7.1:5366954-5366973 | None:intergenic | 45.0% | |
| GCAGCTACAATGACAAACTC+AGG | + | chr7.1:5366306-5366325 | None:intergenic | 45.0% | |
| GGAATTGGCTGAGTCAATGA+AGG | - | chr7.1:5366872-5366891 | MS.gene07124:intron | 45.0% | |
| GGCAATGAAATCAGCAGGAT+AGG | + | chr7.1:5366361-5366380 | None:intergenic | 45.0% | |
| TATGCCATTGCCAAGATTGC+CGG | - | chr7.1:5366543-5366562 | MS.gene07124:intron | 45.0% | |
| TCGTGTCTGTGTTTGGTTGA+TGG | - | chr7.1:5365667-5365686 | MS.gene07124:CDS | 45.0% | |
| TGAAACCTCCTCATCAAAGC+AGG | + | chr7.1:5366684-5366703 | None:intergenic | 45.0% | |
| TTGAGTCAGCTTGCGAACAA+TGG | + | chr7.1:5366193-5366212 | None:intergenic | 45.0% | |
| ! | ACGTTTTGCCTGCTTTGATG+AGG | - | chr7.1:5366673-5366692 | MS.gene07124:intron | 45.0% |
| ! | AGCAAAGCATCTTCAGGGAT+TGG | + | chr7.1:5366492-5366511 | None:intergenic | 45.0% |
| ! | ATCAGCAGGATAGGTGTTGT+TGG | + | chr7.1:5366352-5366371 | None:intergenic | 45.0% |
| ! | CAATGACATTGGTCTGGATC+TGG | + | chr7.1:5366392-5366411 | None:intergenic | 45.0% |
| ! | CCAGTAAGCAAAGCATCTTC+AGG | + | chr7.1:5366498-5366517 | None:intergenic | 45.0% |
| ! | TTTTGCCTGCTTTGATGAGG+AGG | - | chr7.1:5366676-5366695 | MS.gene07124:intron | 45.0% |
| !! | CATTTTGATCCCGGCAATCT+TGG | + | chr7.1:5366556-5366575 | None:intergenic | 45.0% |
| !! | GATCAAAAGTGTCGGTGCTA+TGG | + | chr7.1:5365553-5365572 | None:intergenic | 45.0% |
| !! | GTTTTTGTTTCCGGTCATCG+AGG | - | chr7.1:5366153-5366172 | MS.gene07124:CDS | 45.0% |
| !! | TCATCGAGGTCTTGTTGGTT+CGG | - | chr7.1:5366167-5366186 | MS.gene07124:CDS | 45.0% |
| !!! | GTTTTGAAGGCGATCTCGTT+TGG | - | chr7.1:5366904-5366923 | MS.gene07124:intron | 45.0% |
| AAAGGTCAACGGTGCAAAGG+AGG | - | chr7.1:5366710-5366729 | MS.gene07124:intron | 50.0% | |
| ACACAATGTCTCACTCTCCG+AGG | - | chr7.1:5365770-5365789 | MS.gene07124:CDS | 50.0% | |
| ACCAAACACAGACACGACAC+TGG | + | chr7.1:5365664-5365683 | None:intergenic | 50.0% | |
| ACCAACAAGACCTCGATGAC+CGG | + | chr7.1:5366166-5366185 | None:intergenic | 50.0% | |
| AGCTCAAAACTTGCAGCCCT+TGG | - | chr7.1:5366969-5366988 | MS.gene07124:intron | 50.0% | |
| AGGCTTCGTGGATGCAAAGA+AGG | + | chr7.1:5366286-5366305 | None:intergenic | 50.0% | |
| ATGCCATTGCCAAGATTGCC+GGG | - | chr7.1:5366544-5366563 | MS.gene07124:intron | 50.0% | |
| CAAAACTTGCAGCCCTTGGT+TGG | - | chr7.1:5366973-5366992 | MS.gene07124:intron | 50.0% | |
| GAATGTAGGGAGTGGAAAGG+AGG | - | chr7.1:5366839-5366858 | MS.gene07124:intron | 50.0% | |
| GAGGAGGTTTCATGAGGCAA+AGG | - | chr7.1:5366692-5366711 | MS.gene07124:intron | 50.0% | |
| GGCATGGATACCACCAACTT+TGG | + | chr7.1:5366331-5366350 | None:intergenic | 50.0% | |
| GGGATAGTACTAAGCCCGAT+GGG | - | chr7.1:5366925-5366944 | MS.gene07124:intron | 50.0% | |
| GGGATGCCGACCAACTTATA+CGG | - | chr7.1:5366618-5366637 | MS.gene07124:intron | 50.0% | |
| TGGCACTAACACACTGTCAC+CGG | + | chr7.1:5365644-5365663 | None:intergenic | 50.0% | |
| TGGGACACCAAGAAAGCTGA+TGG | - | chr7.1:5366944-5366963 | MS.gene07124:intron | 50.0% | |
| TGGGATAGTACTAAGCCCGA+TGG | - | chr7.1:5366924-5366943 | MS.gene07124:intron | 50.0% | |
| ! | GTTCGCAAGCTGACTCAACT+CGG | - | chr7.1:5366195-5366214 | MS.gene07124:CDS | 50.0% |
| ! | TGACATTGGTCTGGATCTGG+AGG | + | chr7.1:5366389-5366408 | None:intergenic | 50.0% |
| ! | TGCAAAGGAGGTAGTGGTGT+GGG | - | chr7.1:5366722-5366741 | MS.gene07124:intron | 50.0% |
| ! | TTCGCAAGCTGACTCAACTC+GGG | - | chr7.1:5366196-5366215 | MS.gene07124:CDS | 50.0% |
| !! | AGACTTTCGGTGTCCAACCA+AGG | + | chr7.1:5366989-5367008 | None:intergenic | 50.0% |
| !! | AGCTTTCTTGGTGTCCCATC+GGG | + | chr7.1:5366942-5366961 | None:intergenic | 50.0% |
| !! | CAGCTTTCTTGGTGTCCCAT+CGG | + | chr7.1:5366943-5366962 | None:intergenic | 50.0% |
| !! | CAGGATAGGTGTTGTTGGCA+TGG | + | chr7.1:5366347-5366366 | None:intergenic | 50.0% |
| !! | GACTTTCGGTGTCCAACCAA+GGG | + | chr7.1:5366988-5367007 | None:intergenic | 50.0% |
| !! | GCATCTTCAGGGATTGGTTG+AGG | + | chr7.1:5366486-5366505 | None:intergenic | 50.0% |
| CAACGGTGCAAAGGAGGTAG+TGG | - | chr7.1:5366716-5366735 | MS.gene07124:intron | 55.0% | |
| GATCCCGGCAATCTTGGCAA+TGG | + | chr7.1:5366550-5366569 | None:intergenic | 55.0% | |
| GCCAGTGTCGTGTCTGTGTT+TGG | - | chr7.1:5365660-5365679 | MS.gene07124:CDS | 55.0% | |
| GGCAAAGGTCAACGGTGCAA+AGG | - | chr7.1:5366707-5366726 | MS.gene07124:intron | 55.0% | |
| GGTCTGGATCTGGAGGTTGA+TGG | + | chr7.1:5366382-5366401 | None:intergenic | 55.0% | |
| GTAGCTGCTGCCAAAGTTGG+TGG | - | chr7.1:5366318-5366337 | MS.gene07124:CDS | 55.0% | |
| ! | GCAAAGGAGGTAGTGGTGTG+GGG | - | chr7.1:5366723-5366742 | MS.gene07124:intron | 55.0% |
| ! | GTGCAAAGGAGGTAGTGGTG+TGG | - | chr7.1:5366721-5366740 | MS.gene07124:intron | 55.0% |
| ! | TCCGGTCATCGAGGTCTTGT+TGG | - | chr7.1:5366162-5366181 | MS.gene07124:CDS | 55.0% |
| GGGTACGGGGAGTCCACTTA+GGG | - | chr7.1:5366743-5366762 | MS.gene07124:intron | 60.0% | |
| ! | AGGTAGTGGTGTGGGGTACG+GGG | - | chr7.1:5366730-5366749 | MS.gene07124:intron | 60.0% |
| ! | GAGGTAGTGGTGTGGGGTAC+GGG | - | chr7.1:5366729-5366748 | MS.gene07124:intron | 60.0% |
| ! | GGAGGTAGTGGTGTGGGGTA+CGG | - | chr7.1:5366728-5366747 | MS.gene07124:intron | 60.0% |
| GGGGTACGGGGAGTCCACTT+AGG | - | chr7.1:5366742-5366761 | MS.gene07124:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5365398 | 5367067 | 5365398 | ID=MS.gene07124 |
| chr7.1 | mRNA | 5365398 | 5367067 | 5365398 | ID=MS.gene07124.t1;Parent=MS.gene07124 |
| chr7.1 | exon | 5367052 | 5367067 | 5367052 | ID=MS.gene07124.t1.exon1;Parent=MS.gene07124.t1 |
| chr7.1 | CDS | 5367052 | 5367067 | 5367052 | ID=cds.MS.gene07124.t1;Parent=MS.gene07124.t1 |
| chr7.1 | exon | 5365398 | 5366344 | 5365398 | ID=MS.gene07124.t1.exon2;Parent=MS.gene07124.t1 |
| chr7.1 | CDS | 5365398 | 5366344 | 5365398 | ID=cds.MS.gene07124.t1;Parent=MS.gene07124.t1 |
| Gene Sequence |
| Protein sequence |
