Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071270.t1 | GAU27691.1 | 72 | 346 | 84 | 2 | 2 | 334 | 16 | 361 | 8.70E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071270.t1 | Q6L8G0 | 49.5 | 327 | 162 | 1 | 11 | 334 | 27 | 353 | 3.4e-74 | 280.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071270.t1 | A0A2Z6M6N0 | 72.0 | 346 | 84 | 2 | 2 | 334 | 16 | 361 | 6.3e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071270 | MS.gene50197 | PPI |
| MS.gene071270 | MS.gene038972 | PPI |
| MS.gene071270 | MS.gene56999 | PPI |
| MS.gene071270 | MS.gene066193 | PPI |
| MS.gene071270 | MS.gene62494 | PPI |
| MS.gene071270 | MS.gene045723 | PPI |
| MS.gene071270 | MS.gene009810 | PPI |
| MS.gene071270 | MS.gene54167 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071270.t1 | MTR_3g081640 | 76.657 | 347 | 68 | 1 | 1 | 334 | 15 | 361 | 0.0 | 510 |
| MS.gene071270.t1 | MTR_3g081580 | 75.000 | 344 | 76 | 3 | 1 | 334 | 15 | 358 | 3.56e-174 | 487 |
| MS.gene071270.t1 | MTR_3g082050 | 76.331 | 338 | 75 | 1 | 2 | 334 | 12 | 349 | 2.65e-167 | 469 |
| MS.gene071270.t1 | MTR_3g082050 | 76.418 | 335 | 74 | 1 | 5 | 334 | 43 | 377 | 2.84e-166 | 468 |
| MS.gene071270.t1 | MTR_3g082050 | 77.287 | 317 | 67 | 1 | 23 | 334 | 56 | 372 | 6.43e-164 | 462 |
| MS.gene071270.t1 | MTR_3g081690 | 76.489 | 319 | 70 | 1 | 2 | 315 | 12 | 330 | 9.97e-157 | 442 |
| MS.gene071270.t1 | MTR_3g081690 | 77.517 | 298 | 62 | 1 | 23 | 315 | 56 | 353 | 2.67e-153 | 435 |
| MS.gene071270.t1 | MTR_2g064310 | 56.560 | 343 | 139 | 4 | 2 | 334 | 16 | 358 | 8.87e-133 | 382 |
| MS.gene071270.t1 | MTR_6g007687 | 51.471 | 340 | 149 | 4 | 1 | 332 | 14 | 345 | 3.07e-107 | 317 |
| MS.gene071270.t1 | MTR_8g105030 | 49.702 | 336 | 158 | 3 | 1 | 328 | 15 | 347 | 1.17e-106 | 317 |
| MS.gene071270.t1 | MTR_4g083570 | 49.112 | 338 | 168 | 3 | 1 | 334 | 13 | 350 | 4.30e-105 | 311 |
| MS.gene071270.t1 | MTR_3g104400 | 47.645 | 361 | 148 | 4 | 15 | 334 | 5 | 365 | 1.67e-102 | 306 |
| MS.gene071270.t1 | MTR_3g081690 | 73.009 | 226 | 53 | 2 | 98 | 315 | 14 | 239 | 2.33e-97 | 288 |
| MS.gene071270.t1 | MTR_1g016120 | 46.961 | 362 | 150 | 7 | 15 | 334 | 13 | 374 | 3.46e-94 | 285 |
| MS.gene071270.t1 | MTR_3g081690 | 77.895 | 190 | 35 | 2 | 133 | 315 | 6 | 195 | 4.75e-84 | 253 |
| MS.gene071270.t1 | MTR_3g081690 | 77.249 | 189 | 38 | 1 | 132 | 315 | 29 | 217 | 4.33e-83 | 251 |
| MS.gene071270.t1 | MTR_5g071990 | 43.202 | 331 | 159 | 8 | 11 | 334 | 10 | 318 | 1.73e-78 | 243 |
| MS.gene071270.t1 | MTR_3g081630 | 61.538 | 65 | 21 | 2 | 67 | 131 | 23 | 83 | 5.18e-17 | 77.0 |
| MS.gene071270.t1 | MTR_4g006710 | 41.758 | 91 | 52 | 1 | 18 | 108 | 21 | 110 | 1.40e-13 | 66.6 |
| MS.gene071270.t1 | MTR_2g097580 | 22.184 | 293 | 197 | 9 | 51 | 333 | 64 | 335 | 7.35e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071270.t1 | AT3G12750 | 55.942 | 345 | 135 | 4 | 1 | 334 | 17 | 355 | 3.92e-128 | 370 |
| MS.gene071270.t1 | AT1G05300 | 56.061 | 330 | 132 | 6 | 16 | 334 | 33 | 360 | 2.54e-118 | 346 |
| MS.gene071270.t1 | AT2G32270 | 53.529 | 340 | 131 | 5 | 4 | 334 | 18 | 339 | 1.98e-111 | 327 |
| MS.gene071270.t1 | AT1G31260 | 49.704 | 338 | 158 | 3 | 9 | 334 | 27 | 364 | 2.34e-107 | 318 |
| MS.gene071270.t1 | AT5G62160 | 51.297 | 347 | 151 | 7 | 1 | 334 | 14 | 355 | 5.42e-107 | 317 |
| MS.gene071270.t1 | AT4G19680 | 46.746 | 338 | 171 | 4 | 3 | 334 | 16 | 350 | 5.94e-100 | 298 |
| MS.gene071270.t1 | AT2G04032 | 47.576 | 330 | 161 | 5 | 16 | 334 | 37 | 365 | 1.33e-98 | 296 |
| MS.gene071270.t1 | AT4G19690 | 45.906 | 342 | 160 | 3 | 3 | 334 | 21 | 347 | 1.89e-96 | 290 |
| MS.gene071270.t1 | AT1G60960 | 41.310 | 397 | 169 | 7 | 2 | 334 | 19 | 415 | 1.09e-88 | 272 |
| MS.gene071270.t1 | AT1G60960 | 41.310 | 397 | 169 | 7 | 2 | 334 | 29 | 425 | 1.66e-88 | 272 |
| MS.gene071270.t1 | AT4G33020 | 41.081 | 370 | 165 | 5 | 15 | 334 | 25 | 391 | 9.95e-86 | 264 |
| MS.gene071270.t1 | AT4G33020 | 40.751 | 346 | 154 | 4 | 37 | 334 | 2 | 344 | 3.38e-79 | 245 |
| MS.gene071270.t1 | AT2G30080 | 43.077 | 325 | 171 | 6 | 23 | 334 | 18 | 341 | 1.24e-73 | 231 |
| MS.gene071270.t1 | AT1G05300 | 52.838 | 229 | 95 | 6 | 16 | 233 | 33 | 259 | 1.92e-69 | 218 |
| MS.gene071270.t1 | AT4G19680 | 44.351 | 239 | 124 | 4 | 3 | 235 | 16 | 251 | 2.03e-61 | 197 |
| MS.gene071270.t1 | AT1G10970 | 44.615 | 130 | 70 | 1 | 16 | 143 | 10 | 139 | 5.69e-31 | 120 |
| MS.gene071270.t1 | AT1G10970 | 44.615 | 130 | 70 | 1 | 16 | 143 | 10 | 139 | 5.69e-31 | 120 |
| MS.gene071270.t1 | AT1G60960 | 42.361 | 144 | 78 | 2 | 2 | 140 | 29 | 172 | 4.59e-30 | 116 |
| MS.gene071270.t1 | AT4G19690 | 36.458 | 192 | 97 | 3 | 3 | 184 | 21 | 197 | 2.70e-29 | 112 |
Find 65 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAATTCACCTTGTTTAA+AGG | 0.198892 | 7.1:+68570030 | MS.gene071270:CDS |
| AGCCGGAATCTTAATTTATA+TGG | 0.200488 | 7.1:+68571496 | MS.gene071270:CDS |
| TGCAGCTACGAGTGGCTTTA+TGG | 0.249884 | 7.1:-68570470 | None:intergenic |
| GTTGTTCACTCGGTTATAAT+AGG | 0.340918 | 7.1:+68570415 | MS.gene071270:CDS |
| TGCCATATAAATTAAGATTC+CGG | 0.361053 | 7.1:-68571498 | None:intergenic |
| CCTTCAACAATAAGAGCCTT+AGG | 0.365952 | 7.1:-68571455 | None:intergenic |
| CTATCTCTTGTACTTGGAGC+TGG | 0.369757 | 7.1:+68571596 | MS.gene071270:CDS |
| AACAGTAAAAGACTCTTATT+AGG | 0.372888 | 7.1:+68571566 | MS.gene071270:CDS |
| TTGTTTAAAGGATCATCCTT+GGG | 0.389742 | 7.1:+68570042 | MS.gene071270:CDS |
| TGTGGCTATGTGCTCTGCTA+TGG | 0.396967 | 7.1:+68570087 | MS.gene071270:CDS |
| ATAGCCACAAATTCGGCTAA+TGG | 0.401100 | 7.1:-68570073 | None:intergenic |
| TGCATTCTATCTCTTGTACT+TGG | 0.416873 | 7.1:+68571590 | MS.gene071270:CDS |
| CCTAAGGCTCTTATTGTTGA+AGG | 0.416936 | 7.1:+68571455 | MS.gene071270:CDS |
| GTGGCTATGTGCTCTGCTAT+GGG | 0.421001 | 7.1:+68570088 | MS.gene071270:CDS |
| CTTCTGCGGCTGTTAGTGTT+GGG | 0.421692 | 7.1:-68569772 | None:intergenic |
| TTGACTACTCCGGTAGGGAT+TGG | 0.423041 | 7.1:+68571392 | MS.gene071270:CDS |
| GTGATGGAAAAGATGAAGAT+AGG | 0.429744 | 7.1:+68569801 | MS.gene071270:CDS |
| GGTATCACTTTGCCGAGAAA+AGG | 0.433323 | 7.1:-68569902 | None:intergenic |
| TATCTTGTAAACAAGGGCTT+TGG | 0.436160 | 7.1:-68569831 | None:intergenic |
| CCTTCTGCGGCTGTTAGTGT+TGG | 0.438219 | 7.1:-68569773 | None:intergenic |
| CTGTTAGTGTTGGGATTATG+AGG | 0.443819 | 7.1:-68569763 | None:intergenic |
| GAATGTATCTATTGCAATCA+TGG | 0.445997 | 7.1:+68571355 | MS.gene071270:CDS |
| TCATTATAGGTGCTAGAGTT+GGG | 0.460867 | 7.1:+68570388 | MS.gene071270:intron |
| AGAGCACATAGCCACAAATT+CGG | 0.461736 | 7.1:-68570080 | None:intergenic |
| TTCATTATAGGTGCTAGAGT+TGG | 0.463613 | 7.1:+68570387 | MS.gene071270:intron |
| CTTGTTTAAAGGATCATCCT+TGG | 0.464419 | 7.1:+68570041 | MS.gene071270:CDS |
| CATCAGAACTTCTTCGCCAT+AGG | 0.469470 | 7.1:+68570269 | MS.gene071270:CDS |
| TCGCCATAGGGTTATATCAC+AGG | 0.476722 | 7.1:+68570282 | MS.gene071270:CDS |
| TTAAGACTCTCAGAAGCATC+CGG | 0.477614 | 7.1:-68570013 | None:intergenic |
| GTAGGGATTGGAATTGGTCT+AGG | 0.485389 | 7.1:+68571404 | MS.gene071270:CDS |
| ACTCCGGTAGGGATTGGAAT+TGG | 0.485985 | 7.1:+68571398 | MS.gene071270:CDS |
| CGGGAGCACATGAACGAAAC+CGG | 0.489796 | 7.1:-68569993 | None:intergenic |
| CTTCAACAATAAGAGCCTTA+GGG | 0.492440 | 7.1:-68571454 | None:intergenic |
| CGGTTTCGTTCATGTGCTCC+CGG | 0.492507 | 7.1:+68569994 | MS.gene071270:CDS |
| CATGGTCATGCCTCTACAGA+TGG | 0.493108 | 7.1:+68570244 | MS.gene071270:CDS |
| ATCTTCAATGCAGCTTCAGC+CGG | 0.496676 | 7.1:+68571479 | MS.gene071270:CDS |
| GTATCACTTTGCCGAGAAAA+GGG | 0.498507 | 7.1:-68569901 | None:intergenic |
| ATCAGAACTTCTTCGCCATA+GGG | 0.506488 | 7.1:+68570270 | MS.gene071270:CDS |
| GTTGGGTATCGTTGTTCACT+CGG | 0.509941 | 7.1:+68570405 | MS.gene071270:CDS |
| ATACTAGTTGCAAGTGCAAT+CGG | 0.511165 | 7.1:+68569869 | MS.gene071270:CDS |
| TTTCTTTGACTACTCCGGTA+GGG | 0.530495 | 7.1:+68571387 | MS.gene071270:CDS |
| TCCATCACATGTACCTTCTG+CGG | 0.530960 | 7.1:-68569786 | None:intergenic |
| TTACCTGTGATATAACCCTA+TGG | 0.542201 | 7.1:-68570285 | None:intergenic |
| GCCGCAGAAGGTACATGTGA+TGG | 0.544964 | 7.1:+68569785 | MS.gene071270:CDS |
| TAGGGATTGGAATTGGTCTA+GGG | 0.549857 | 7.1:+68571405 | MS.gene071270:CDS |
| AAGCTGCTATCTTGTAAACA+AGG | 0.556111 | 7.1:-68569838 | None:intergenic |
| GAGAATGATGTAGAGCATGA+AGG | 0.572834 | 7.1:+68570181 | MS.gene071270:CDS |
| AGAATGATGTAGAGCATGAA+GGG | 0.576994 | 7.1:+68570182 | MS.gene071270:CDS |
| TAAGACTCTCAGAAGCATCC+GGG | 0.590327 | 7.1:-68570012 | None:intergenic |
| GTTATAATAGGAATTTCTCT+CGG | 0.591573 | 7.1:+68570427 | MS.gene071270:CDS |
| ATGGTCATGCCTCTACAGAT+GGG | 0.598457 | 7.1:+68570245 | MS.gene071270:CDS |
| TGGCTATGTGCTCTGCTATG+GGG | 0.611534 | 7.1:+68570089 | MS.gene071270:CDS |
| CAAGGATGATCCTTTAAACA+AGG | 0.615524 | 7.1:-68570040 | None:intergenic |
| TTCTGATGACCCATCTGTAG+AGG | 0.617295 | 7.1:-68570254 | None:intergenic |
| TTATGATGAGAACAGCCCTA+AGG | 0.618758 | 7.1:+68571439 | MS.gene071270:CDS |
| GCATCACACGGTCATGCACA+TGG | 0.620271 | 7.1:+68570226 | MS.gene071270:CDS |
| AGCTGCTATCTTGTAAACAA+GGG | 0.623629 | 7.1:-68569837 | None:intergenic |
| AGACCAATTCCAATCCCTAC+CGG | 0.624986 | 7.1:-68571401 | None:intergenic |
| TGTTTAAAGGATCATCCTTG+GGG | 0.628226 | 7.1:+68570043 | MS.gene071270:CDS |
| CCAACACTAACAGCCGCAGA+AGG | 0.637499 | 7.1:+68569773 | MS.gene071270:CDS |
| AAAGTTAATGCAGCTACGAG+TGG | 0.652237 | 7.1:-68570478 | None:intergenic |
| GCTAATGGAAAATCACCCCA+AGG | 0.677334 | 7.1:-68570058 | None:intergenic |
| GTTCATACACATGCATCACA+CGG | 0.678954 | 7.1:+68570214 | MS.gene071270:CDS |
| ACTTGGATGCTGTATAACCC+AGG | 0.696884 | 7.1:+68570525 | MS.gene071270:CDS |
| GAGCACATGAACGAAACCGG+TGG | 0.714369 | 7.1:-68569990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTCTTAAAAAATAATTTA+AGG | + | chr7.1:68571065-68571084 | MS.gene071270:intron | 10.0% |
| !! | GAAATAATATAAATTTGAAA+TGG | + | chr7.1:68571199-68571218 | MS.gene071270:intron | 10.0% |
| !!! | ACAAAAAATATATATTTTTC+GGG | - | chr7.1:68569938-68569957 | None:intergenic | 10.0% |
| !!! | TATTAAATCATATTATGTTT+TGG | + | chr7.1:68570966-68570985 | MS.gene071270:intron | 10.0% |
| !! | ACTAAAATGTGATTTAATAA+GGG | - | chr7.1:68570928-68570947 | None:intergenic | 15.0% |
| !! | TACTAAAATGTGATTTAATA+AGG | - | chr7.1:68570929-68570948 | None:intergenic | 15.0% |
| !! | TTTATAGTATATTCTTAAGA+TGG | - | chr7.1:68571163-68571182 | None:intergenic | 15.0% |
| !!! | AAGTTTTATAATTTGAACTA+TGG | + | chr7.1:68571123-68571142 | MS.gene071270:intron | 15.0% |
| !!! | AGTATCTTATCTTTATATTT+TGG | - | chr7.1:68570795-68570814 | None:intergenic | 15.0% |
| !!! | CAAAAAATATATATTTTTCG+GGG | - | chr7.1:68569937-68569956 | None:intergenic | 15.0% |
| !!! | TTGAATTTTGATTTCATTAT+AGG | + | chr7.1:68570375-68570394 | MS.gene071270:intron | 15.0% |
| !! | AATAAGTCAGTAAACAATTT+AGG | - | chr7.1:68571304-68571323 | None:intergenic | 20.0% |
| !! | AATTTAATTACTATGTACCA+TGG | + | chr7.1:68570326-68570345 | MS.gene071270:intron | 20.0% |
| !! | ATGAATGAACTATAATTAGT+TGG | + | chr7.1:68570667-68570686 | MS.gene071270:intron | 20.0% |
| !! | TACTGAAAAGAAAACAAAAA+CGG | - | chr7.1:68570590-68570609 | None:intergenic | 20.0% |
| !! | TCAAAAACGTAATTCAAAAA+GGG | + | chr7.1:68570147-68570166 | MS.gene071270:CDS | 20.0% |
| !! | TTCAAAAACGTAATTCAAAA+AGG | + | chr7.1:68570146-68570165 | MS.gene071270:CDS | 20.0% |
| !!! | AAAAAGAAACTTAGCTTTAT+AGG | - | chr7.1:68570764-68570783 | None:intergenic | 20.0% |
| !!! | AACTTTGGTTTTCTTTATTA+TGG | + | chr7.1:68570699-68570718 | MS.gene071270:intron | 20.0% |
| !!! | CATTTTAGTATGTTTAGTTT+TGG | + | chr7.1:68570939-68570958 | MS.gene071270:intron | 20.0% |
| !!! | TAAATTGTTTACTGACTTAT+TGG | + | chr7.1:68571303-68571322 | MS.gene071270:intron | 20.0% |
| ! | AACAGTAAAAGACTCTTATT+AGG | + | chr7.1:68571566-68571585 | MS.gene071270:CDS | 25.0% |
| ! | AATTTGAACTATGGATATCA+TGG | + | chr7.1:68571132-68571151 | MS.gene071270:intron | 25.0% |
| ! | GTTATAATAGGAATTTCTCT+CGG | + | chr7.1:68570427-68570446 | MS.gene071270:CDS | 25.0% |
| ! | TATAGAAAACACATAACTTG+TGG | - | chr7.1:68571241-68571260 | None:intergenic | 25.0% |
| ! | TGCCATATAAATTAAGATTC+CGG | - | chr7.1:68571501-68571520 | None:intergenic | 25.0% |
| ! | TTGTTGAAAACTTAAAACCA+TGG | - | chr7.1:68570346-68570365 | None:intergenic | 25.0% |
| !! | ACTTTTCATCAACTTTTTGA+AGG | + | chr7.1:68570496-68570515 | MS.gene071270:CDS | 25.0% |
| !! | ATAGAAAACACATAACTTGT+GGG | - | chr7.1:68571240-68571259 | None:intergenic | 25.0% |
| !! | GCATACTAAAAAGTGATTTT+TGG | - | chr7.1:68571038-68571057 | None:intergenic | 25.0% |
| !! | GTTGATCTTTTCTTGTATTA+GGG | - | chr7.1:68571282-68571301 | None:intergenic | 25.0% |
| !! | TCTTAATTCACCTTGTTTAA+AGG | + | chr7.1:68570030-68570049 | MS.gene071270:CDS | 25.0% |
| !!! | AGTTGGTATTTTTCAAACTT+TGG | + | chr7.1:68570684-68570703 | MS.gene071270:intron | 25.0% |
| !!! | GCTAAGTTTCTTTTTGTTTT+CGG | + | chr7.1:68570769-68570788 | MS.gene071270:intron | 25.0% |
| AGCCGGAATCTTAATTTATA+TGG | + | chr7.1:68571496-68571515 | MS.gene071270:CDS | 30.0% | |
| GAATGTATCTATTGCAATCA+TGG | + | chr7.1:68571355-68571374 | MS.gene071270:CDS | 30.0% | |
| TGTGATTTAATAAGGGAGTT+TGG | - | chr7.1:68570921-68570940 | None:intergenic | 30.0% | |
| TTGTTTAAAGGATCATCCTT+GGG | + | chr7.1:68570042-68570061 | MS.gene071270:CDS | 30.0% | |
| ! | GGTTGATCTTTTCTTGTATT+AGG | - | chr7.1:68571283-68571302 | None:intergenic | 30.0% |
| ! | TTGATACAATTAGAGTACCT+GGG | - | chr7.1:68570545-68570564 | None:intergenic | 30.0% |
| !! | ACGTTTTTGAAAATAAGCAG+TGG | - | chr7.1:68570137-68570156 | None:intergenic | 30.0% |
| AAGCTGCTATCTTGTAAACA+AGG | - | chr7.1:68569841-68569860 | None:intergenic | 35.0% | |
| AGAATGATGTAGAGCATGAA+GGG | + | chr7.1:68570182-68570201 | MS.gene071270:CDS | 35.0% | |
| AGCTGCTATCTTGTAAACAA+GGG | - | chr7.1:68569840-68569859 | None:intergenic | 35.0% | |
| ATACTAGTTGCAAGTGCAAT+CGG | + | chr7.1:68569869-68569888 | MS.gene071270:CDS | 35.0% | |
| CAAGGATGATCCTTTAAACA+AGG | - | chr7.1:68570043-68570062 | None:intergenic | 35.0% | |
| CTTCAACAATAAGAGCCTTA+GGG | - | chr7.1:68571457-68571476 | None:intergenic | 35.0% | |
| CTTGTTTAAAGGATCATCCT+TGG | + | chr7.1:68570041-68570060 | MS.gene071270:CDS | 35.0% | |
| GTTGTTCACTCGGTTATAAT+AGG | + | chr7.1:68570415-68570434 | MS.gene071270:CDS | 35.0% | |
| TATCTTGTAAACAAGGGCTT+TGG | - | chr7.1:68569834-68569853 | None:intergenic | 35.0% | |
| TCATTATAGGTGCTAGAGTT+GGG | + | chr7.1:68570388-68570407 | MS.gene071270:intron | 35.0% | |
| TGCATTCTATCTCTTGTACT+TGG | + | chr7.1:68571590-68571609 | MS.gene071270:CDS | 35.0% | |
| TGTTTAAAGGATCATCCTTG+GGG | + | chr7.1:68570043-68570062 | MS.gene071270:CDS | 35.0% | |
| TTACCTGTGATATAACCCTA+TGG | - | chr7.1:68570288-68570307 | None:intergenic | 35.0% | |
| TTCATTATAGGTGCTAGAGT+TGG | + | chr7.1:68570387-68570406 | MS.gene071270:intron | 35.0% | |
| TTTATGACCAATGCATTAGC+TGG | + | chr7.1:68570884-68570903 | MS.gene071270:intron | 35.0% | |
| ! | CTTGATACAATTAGAGTACC+TGG | - | chr7.1:68570546-68570565 | None:intergenic | 35.0% |
| ! | GTGATGGAAAAGATGAAGAT+AGG | + | chr7.1:68569801-68569820 | MS.gene071270:CDS | 35.0% |
| ! | GTTATTAAAGCTTTTGCAGC+TGG | + | chr7.1:68569956-68569975 | MS.gene071270:CDS | 35.0% |
| ! | GTTCTTTTCTTTGACTACTC+CGG | + | chr7.1:68571382-68571401 | MS.gene071270:CDS | 35.0% |
| ! | TTTTCCATTAGCCGAATTTG+TGG | + | chr7.1:68570069-68570088 | MS.gene071270:CDS | 35.0% |
| !! | CATCAACTTTTTGAAGGCAT+GGG | + | chr7.1:68570502-68570521 | MS.gene071270:CDS | 35.0% |
| !! | TCATCAACTTTTTGAAGGCA+TGG | + | chr7.1:68570501-68570520 | MS.gene071270:CDS | 35.0% |
| !!! | CATGTCTCTTTTAGCCTTAT+GGG | + | chr7.1:68571622-68571641 | MS.gene071270:CDS | 35.0% |
| !!! | TTTTGCAGCTGGTGTTATTT+TGG | + | chr7.1:68569967-68569986 | MS.gene071270:CDS | 35.0% |
| AAAGTTAATGCAGCTACGAG+TGG | - | chr7.1:68570481-68570500 | None:intergenic | 40.0% | |
| AGAGCACATAGCCACAAATT+CGG | - | chr7.1:68570083-68570102 | None:intergenic | 40.0% | |
| ATAGCCACAAATTCGGCTAA+TGG | - | chr7.1:68570076-68570095 | None:intergenic | 40.0% | |
| ATCAGAACTTCTTCGCCATA+GGG | + | chr7.1:68570270-68570289 | MS.gene071270:CDS | 40.0% | |
| CCTAAGGCTCTTATTGTTGA+AGG | + | chr7.1:68571455-68571474 | MS.gene071270:CDS | 40.0% | |
| CCTTCAACAATAAGAGCCTT+AGG | - | chr7.1:68571458-68571477 | None:intergenic | 40.0% | |
| GAGAATGATGTAGAGCATGA+AGG | + | chr7.1:68570181-68570200 | MS.gene071270:CDS | 40.0% | |
| GTATCACTTTGCCGAGAAAA+GGG | - | chr7.1:68569904-68569923 | None:intergenic | 40.0% | |
| GTTCATACACATGCATCACA+CGG | + | chr7.1:68570214-68570233 | MS.gene071270:CDS | 40.0% | |
| TTATGATGAGAACAGCCCTA+AGG | + | chr7.1:68571439-68571458 | MS.gene071270:CDS | 40.0% | |
| TTTCGATCCAGCTAATGCAT+TGG | - | chr7.1:68570894-68570913 | None:intergenic | 40.0% | |
| TTTCTTTGACTACTCCGGTA+GGG | + | chr7.1:68571387-68571406 | MS.gene071270:CDS | 40.0% | |
| ! | CTGTTAGTGTTGGGATTATG+AGG | - | chr7.1:68569766-68569785 | None:intergenic | 40.0% |
| ! | GGTGTTTGTATCCCTTTTCT+CGG | + | chr7.1:68569890-68569909 | MS.gene071270:CDS | 40.0% |
| ! | TAGGGATTGGAATTGGTCTA+GGG | + | chr7.1:68571405-68571424 | MS.gene071270:CDS | 40.0% |
| ! | TTTTCTTTGACTACTCCGGT+AGG | + | chr7.1:68571386-68571405 | MS.gene071270:CDS | 40.0% |
| !! | TTAAGACTCTCAGAAGCATC+CGG | - | chr7.1:68570016-68570035 | None:intergenic | 40.0% |
| !!! | GCATGTCTCTTTTAGCCTTA+TGG | + | chr7.1:68571621-68571640 | MS.gene071270:CDS | 40.0% |
| !!! | TATTTTTCGGGGCTTAATGC+AGG | - | chr7.1:68569926-68569945 | None:intergenic | 40.0% |
| ACTTGGATGCTGTATAACCC+AGG | + | chr7.1:68570525-68570544 | MS.gene071270:CDS | 45.0% | |
| AGACCAATTCCAATCCCTAC+CGG | - | chr7.1:68571404-68571423 | None:intergenic | 45.0% | |
| ATCTTCAATGCAGCTTCAGC+CGG | + | chr7.1:68571479-68571498 | MS.gene071270:CDS | 45.0% | |
| ATGGTCATGCCTCTACAGAT+GGG | + | chr7.1:68570245-68570264 | MS.gene071270:CDS | 45.0% | |
| CATCAGAACTTCTTCGCCAT+AGG | + | chr7.1:68570269-68570288 | MS.gene071270:CDS | 45.0% | |
| CTATCTCTTGTACTTGGAGC+TGG | + | chr7.1:68571596-68571615 | MS.gene071270:CDS | 45.0% | |
| GCTAATGGAAAATCACCCCA+AGG | - | chr7.1:68570061-68570080 | None:intergenic | 45.0% | |
| GGTATCACTTTGCCGAGAAA+AGG | - | chr7.1:68569905-68569924 | None:intergenic | 45.0% | |
| TCCATCACATGTACCTTCTG+CGG | - | chr7.1:68569789-68569808 | None:intergenic | 45.0% | |
| TCGCCATAGGGTTATATCAC+AGG | + | chr7.1:68570282-68570301 | MS.gene071270:CDS | 45.0% | |
| TTCTGATGACCCATCTGTAG+AGG | - | chr7.1:68570257-68570276 | None:intergenic | 45.0% | |
| ! | GTAGGGATTGGAATTGGTCT+AGG | + | chr7.1:68571404-68571423 | MS.gene071270:CDS | 45.0% |
| ! | GTTGGGTATCGTTGTTCACT+CGG | + | chr7.1:68570405-68570424 | MS.gene071270:CDS | 45.0% |
| ! | TGCTATGGGGACTCTTTTGA+TGG | + | chr7.1:68570102-68570121 | MS.gene071270:CDS | 45.0% |
| ! | TTGGAAGTGCAATCACTTGC+AGG | + | chr7.1:68571322-68571341 | MS.gene071270:intron | 45.0% |
| !! | CTTTTTGAAGGCATGGGACT+TGG | + | chr7.1:68570508-68570527 | MS.gene071270:CDS | 45.0% |
| !! | TAAGACTCTCAGAAGCATCC+GGG | - | chr7.1:68570015-68570034 | None:intergenic | 45.0% |
| !!! | AACAAAAAATATATATTTTT+CGG | - | chr7.1:68569939-68569958 | None:intergenic | 5.0% |
| ACTCCGGTAGGGATTGGAAT+TGG | + | chr7.1:68571398-68571417 | MS.gene071270:CDS | 50.0% | |
| CATGGTCATGCCTCTACAGA+TGG | + | chr7.1:68570244-68570263 | MS.gene071270:CDS | 50.0% | |
| CTTCTGCGGCTGTTAGTGTT+GGG | - | chr7.1:68569775-68569794 | None:intergenic | 50.0% | |
| GTGGCTATGTGCTCTGCTAT+GGG | + | chr7.1:68570088-68570107 | MS.gene071270:CDS | 50.0% | |
| TGGCTATGTGCTCTGCTATG+GGG | + | chr7.1:68570089-68570108 | MS.gene071270:CDS | 50.0% | |
| TGTGGCTATGTGCTCTGCTA+TGG | + | chr7.1:68570087-68570106 | MS.gene071270:CDS | 50.0% | |
| TTGACTACTCCGGTAGGGAT+TGG | + | chr7.1:68571392-68571411 | MS.gene071270:CDS | 50.0% | |
| ! | TGCAGCTACGAGTGGCTTTA+TGG | - | chr7.1:68570473-68570492 | None:intergenic | 50.0% |
| !!! | GCTGGTGTTATTTTGGCCAC+CGG | + | chr7.1:68569974-68569993 | MS.gene071270:CDS | 50.0% |
| CCAACACTAACAGCCGCAGA+AGG | + | chr7.1:68569773-68569792 | MS.gene071270:CDS | 55.0% | |
| CCTTCTGCGGCTGTTAGTGT+TGG | - | chr7.1:68569776-68569795 | None:intergenic | 55.0% | |
| CGGTTTCGTTCATGTGCTCC+CGG | + | chr7.1:68569994-68570013 | MS.gene071270:CDS | 55.0% | |
| GAGCACATGAACGAAACCGG+TGG | - | chr7.1:68569993-68570012 | None:intergenic | 55.0% | |
| GCATCACACGGTCATGCACA+TGG | + | chr7.1:68570226-68570245 | MS.gene071270:CDS | 55.0% | |
| ! | CGGGAGCACATGAACGAAAC+CGG | - | chr7.1:68569996-68570015 | None:intergenic | 55.0% |
| ! | GCCGCAGAAGGTACATGTGA+TGG | + | chr7.1:68569785-68569804 | MS.gene071270:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 68569755 | 68571649 | 68569755 | ID=MS.gene071270 |
| chr7.1 | mRNA | 68569755 | 68571649 | 68569755 | ID=MS.gene071270.t1;Parent=MS.gene071270 |
| chr7.1 | exon | 68569755 | 68570303 | 68569755 | ID=MS.gene071270.t1.exon1;Parent=MS.gene071270.t1 |
| chr7.1 | CDS | 68569755 | 68570303 | 68569755 | ID=cds.MS.gene071270.t1;Parent=MS.gene071270.t1 |
| chr7.1 | exon | 68570397 | 68570546 | 68570397 | ID=MS.gene071270.t1.exon2;Parent=MS.gene071270.t1 |
| chr7.1 | CDS | 68570397 | 68570546 | 68570397 | ID=cds.MS.gene071270.t1;Parent=MS.gene071270.t1 |
| chr7.1 | exon | 68571344 | 68571649 | 68571344 | ID=MS.gene071270.t1.exon3;Parent=MS.gene071270.t1 |
| chr7.1 | CDS | 68571344 | 68571649 | 68571344 | ID=cds.MS.gene071270.t1;Parent=MS.gene071270.t1 |
| Gene Sequence |
| Protein sequence |
