AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071273

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071273.t1 MTR_3g081640 76.657 347 68 1 1 334 15 361 0.0 510
MS.gene071273.t1 MTR_3g081580 75.000 344 76 3 1 334 15 358 3.56e-174 487
MS.gene071273.t1 MTR_3g082050 76.331 338 75 1 2 334 12 349 2.65e-167 469
MS.gene071273.t1 MTR_3g082050 76.418 335 74 1 5 334 43 377 2.84e-166 468
MS.gene071273.t1 MTR_3g082050 77.287 317 67 1 23 334 56 372 6.43e-164 462
MS.gene071273.t1 MTR_3g081690 76.489 319 70 1 2 315 12 330 9.97e-157 442
MS.gene071273.t1 MTR_3g081690 77.517 298 62 1 23 315 56 353 2.67e-153 435
MS.gene071273.t1 MTR_2g064310 56.560 343 139 4 2 334 16 358 8.87e-133 382
MS.gene071273.t1 MTR_6g007687 51.471 340 149 4 1 332 14 345 3.07e-107 317
MS.gene071273.t1 MTR_8g105030 49.702 336 158 3 1 328 15 347 1.17e-106 317
MS.gene071273.t1 MTR_4g083570 49.112 338 168 3 1 334 13 350 4.30e-105 311
MS.gene071273.t1 MTR_3g104400 47.645 361 148 4 15 334 5 365 1.67e-102 306
MS.gene071273.t1 MTR_3g081690 73.009 226 53 2 98 315 14 239 2.33e-97 288
MS.gene071273.t1 MTR_1g016120 46.961 362 150 7 15 334 13 374 3.46e-94 285
MS.gene071273.t1 MTR_3g081690 77.895 190 35 2 133 315 6 195 4.75e-84 253
MS.gene071273.t1 MTR_3g081690 77.249 189 38 1 132 315 29 217 4.33e-83 251
MS.gene071273.t1 MTR_5g071990 43.202 331 159 8 11 334 10 318 1.73e-78 243
MS.gene071273.t1 MTR_3g081630 61.538 65 21 2 67 131 23 83 5.18e-17 77.0
MS.gene071273.t1 MTR_4g006710 41.758 91 52 1 18 108 21 110 1.40e-13 66.6
MS.gene071273.t1 MTR_2g097580 22.184 293 197 9 51 333 64 335 7.35e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071273.t1 AT3G12750 55.942 345 135 4 1 334 17 355 3.92e-128 370
MS.gene071273.t1 AT1G05300 56.061 330 132 6 16 334 33 360 2.54e-118 346
MS.gene071273.t1 AT2G32270 53.529 340 131 5 4 334 18 339 1.98e-111 327
MS.gene071273.t1 AT1G31260 49.704 338 158 3 9 334 27 364 2.34e-107 318
MS.gene071273.t1 AT5G62160 51.297 347 151 7 1 334 14 355 5.42e-107 317
MS.gene071273.t1 AT4G19680 46.746 338 171 4 3 334 16 350 5.94e-100 298
MS.gene071273.t1 AT2G04032 47.576 330 161 5 16 334 37 365 1.33e-98 296
MS.gene071273.t1 AT4G19690 45.906 342 160 3 3 334 21 347 1.89e-96 290
MS.gene071273.t1 AT1G60960 41.310 397 169 7 2 334 19 415 1.09e-88 272
MS.gene071273.t1 AT1G60960 41.310 397 169 7 2 334 29 425 1.66e-88 272
MS.gene071273.t1 AT4G33020 41.081 370 165 5 15 334 25 391 9.95e-86 264
MS.gene071273.t1 AT4G33020 40.751 346 154 4 37 334 2 344 3.38e-79 245
MS.gene071273.t1 AT2G30080 43.077 325 171 6 23 334 18 341 1.24e-73 231
MS.gene071273.t1 AT1G05300 52.838 229 95 6 16 233 33 259 1.92e-69 218
MS.gene071273.t1 AT4G19680 44.351 239 124 4 3 235 16 251 2.03e-61 197
MS.gene071273.t1 AT1G10970 44.615 130 70 1 16 143 10 139 5.69e-31 120
MS.gene071273.t1 AT1G10970 44.615 130 70 1 16 143 10 139 5.69e-31 120
MS.gene071273.t1 AT1G60960 42.361 144 78 2 2 140 29 172 4.59e-30 116
MS.gene071273.t1 AT4G19690 36.458 192 97 3 3 184 21 197 2.70e-29 112

Find 65 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAATTCACCTTGTTTAA+AGG 0.198892 7.1:-68511147 MS.gene071273:CDS
AGCCGGAATCTTAATTTATA+TGG 0.200488 7.1:-68509681 MS.gene071273:CDS
TGCAGCTACGAGTGGCTTTA+TGG 0.249884 7.1:+68510707 None:intergenic
GTTGTTCACTCGGTTATAAT+AGG 0.340918 7.1:-68510762 MS.gene071273:CDS
TGCCATATAAATTAAGATTC+CGG 0.361053 7.1:+68509679 None:intergenic
CCTTCAACAATAAGAGCCTT+AGG 0.365952 7.1:+68509722 None:intergenic
CTATCTCTTGTACTTGGAGC+TGG 0.369757 7.1:-68509581 MS.gene071273:CDS
AACAGTAAAAGACTCTTATT+AGG 0.372888 7.1:-68509611 MS.gene071273:CDS
TTGTTTAAAGGATCATCCTT+GGG 0.389742 7.1:-68511135 MS.gene071273:CDS
TGTGGCTATGTGCTCTGCTA+TGG 0.396967 7.1:-68511090 MS.gene071273:CDS
ATAGCCACAAATTCGGCTAA+TGG 0.401100 7.1:+68511104 None:intergenic
TGCATTCTATCTCTTGTACT+TGG 0.416873 7.1:-68509587 MS.gene071273:CDS
CCTAAGGCTCTTATTGTTGA+AGG 0.416936 7.1:-68509722 MS.gene071273:CDS
GTGGCTATGTGCTCTGCTAT+GGG 0.421001 7.1:-68511089 MS.gene071273:CDS
CTTCTGCGGCTGTTAGTGTT+GGG 0.421692 7.1:+68511405 None:intergenic
TTGACTACTCCGGTAGGGAT+TGG 0.423041 7.1:-68509785 MS.gene071273:CDS
GTGATGGAAAAGATGAAGAT+AGG 0.429744 7.1:-68511376 MS.gene071273:CDS
GGTATCACTTTGCCGAGAAA+AGG 0.433323 7.1:+68511275 None:intergenic
TATCTTGTAAACAAGGGCTT+TGG 0.436160 7.1:+68511346 None:intergenic
CCTTCTGCGGCTGTTAGTGT+TGG 0.438219 7.1:+68511404 None:intergenic
CTGTTAGTGTTGGGATTATG+AGG 0.443819 7.1:+68511414 None:intergenic
GAATGTATCTATTGCAATCA+TGG 0.445997 7.1:-68509822 MS.gene071273:CDS
TCATTATAGGTGCTAGAGTT+GGG 0.460867 7.1:-68510789 MS.gene071273:intron
AGAGCACATAGCCACAAATT+CGG 0.461736 7.1:+68511097 None:intergenic
TTCATTATAGGTGCTAGAGT+TGG 0.463613 7.1:-68510790 MS.gene071273:intron
CTTGTTTAAAGGATCATCCT+TGG 0.464419 7.1:-68511136 MS.gene071273:CDS
CATCAGAACTTCTTCGCCAT+AGG 0.469470 7.1:-68510908 MS.gene071273:CDS
TCGCCATAGGGTTATATCAC+AGG 0.476722 7.1:-68510895 MS.gene071273:intron
TTAAGACTCTCAGAAGCATC+CGG 0.477614 7.1:+68511164 None:intergenic
GTAGGGATTGGAATTGGTCT+AGG 0.485389 7.1:-68509773 MS.gene071273:CDS
ACTCCGGTAGGGATTGGAAT+TGG 0.485985 7.1:-68509779 MS.gene071273:CDS
CGGGAGCACATGAACGAAAC+CGG 0.489796 7.1:+68511184 None:intergenic
CTTCAACAATAAGAGCCTTA+GGG 0.492440 7.1:+68509723 None:intergenic
CGGTTTCGTTCATGTGCTCC+CGG 0.492507 7.1:-68511183 MS.gene071273:CDS
CATGGTCATGCCTCTACAGA+TGG 0.493108 7.1:-68510933 MS.gene071273:CDS
ATCTTCAATGCAGCTTCAGC+CGG 0.496676 7.1:-68509698 MS.gene071273:CDS
GTATCACTTTGCCGAGAAAA+GGG 0.498507 7.1:+68511276 None:intergenic
ATCAGAACTTCTTCGCCATA+GGG 0.506488 7.1:-68510907 MS.gene071273:CDS
GTTGGGTATCGTTGTTCACT+CGG 0.509941 7.1:-68510772 MS.gene071273:CDS
ATACTAGTTGCAAGTGCAAT+CGG 0.511165 7.1:-68511308 MS.gene071273:CDS
TTTCTTTGACTACTCCGGTA+GGG 0.530495 7.1:-68509790 MS.gene071273:CDS
TCCATCACATGTACCTTCTG+CGG 0.530960 7.1:+68511391 None:intergenic
TTACCTGTGATATAACCCTA+TGG 0.542201 7.1:+68510892 None:intergenic
GCCGCAGAAGGTACATGTGA+TGG 0.544964 7.1:-68511392 MS.gene071273:CDS
TAGGGATTGGAATTGGTCTA+GGG 0.549857 7.1:-68509772 MS.gene071273:CDS
AAGCTGCTATCTTGTAAACA+AGG 0.556111 7.1:+68511339 None:intergenic
GAGAATGATGTAGAGCATGA+AGG 0.572834 7.1:-68510996 MS.gene071273:CDS
AGAATGATGTAGAGCATGAA+GGG 0.576994 7.1:-68510995 MS.gene071273:CDS
TAAGACTCTCAGAAGCATCC+GGG 0.590327 7.1:+68511165 None:intergenic
GTTATAATAGGAATTTCTCT+CGG 0.591573 7.1:-68510750 MS.gene071273:CDS
ATGGTCATGCCTCTACAGAT+GGG 0.598457 7.1:-68510932 MS.gene071273:CDS
TGGCTATGTGCTCTGCTATG+GGG 0.611534 7.1:-68511088 MS.gene071273:CDS
CAAGGATGATCCTTTAAACA+AGG 0.615524 7.1:+68511137 None:intergenic
TTCTGATGACCCATCTGTAG+AGG 0.617295 7.1:+68510923 None:intergenic
TTATGATGAGAACAGCCCTA+AGG 0.618758 7.1:-68509738 MS.gene071273:CDS
GCATCACACGGTCATGCACA+TGG 0.620271 7.1:-68510951 MS.gene071273:CDS
AGCTGCTATCTTGTAAACAA+GGG 0.623629 7.1:+68511340 None:intergenic
AGACCAATTCCAATCCCTAC+CGG 0.624986 7.1:+68509776 None:intergenic
TGTTTAAAGGATCATCCTTG+GGG 0.628226 7.1:-68511134 MS.gene071273:CDS
CCAACACTAACAGCCGCAGA+AGG 0.637499 7.1:-68511404 MS.gene071273:CDS
AAAGTTAATGCAGCTACGAG+TGG 0.652237 7.1:+68510699 None:intergenic
GCTAATGGAAAATCACCCCA+AGG 0.677334 7.1:+68511119 None:intergenic
GTTCATACACATGCATCACA+CGG 0.678954 7.1:-68510963 MS.gene071273:CDS
ACTTGGATGCTGTATAACCC+AGG 0.696884 7.1:-68510652 MS.gene071273:intron
GAGCACATGAACGAAACCGG+TGG 0.714369 7.1:+68511187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTCTTAAAAAATAATTTA+AGG - chr7.1:68510860-68510879 MS.gene071273:intron 10.0%
!! GAAATAATATAAATTTGAAA+TGG - chr7.1:68510994-68511013 MS.gene071273:CDS 10.0%
!!! ACAAAAAATATATATTTTTC+GGG + chr7.1:68509733-68509752 None:intergenic 10.0%
!!! TATTAAATCATATTATGTTT+TGG - chr7.1:68510761-68510780 MS.gene071273:CDS 10.0%
!! ACTAAAATGTGATTTAATAA+GGG + chr7.1:68510723-68510742 None:intergenic 15.0%
!! TACTAAAATGTGATTTAATA+AGG + chr7.1:68510724-68510743 None:intergenic 15.0%
!! TTTATAGTATATTCTTAAGA+TGG + chr7.1:68510958-68510977 None:intergenic 15.0%
!!! AAGTTTTATAATTTGAACTA+TGG - chr7.1:68510918-68510937 MS.gene071273:CDS 15.0%
!!! AGTATCTTATCTTTATATTT+TGG + chr7.1:68510590-68510609 None:intergenic 15.0%
!!! CAAAAAATATATATTTTTCG+GGG + chr7.1:68509732-68509751 None:intergenic 15.0%
!!! TTGAATTTTGATTTCATTAT+AGG - chr7.1:68510170-68510189 MS.gene071273:intron 15.0%
!! AATAAGTCAGTAAACAATTT+AGG + chr7.1:68511099-68511118 None:intergenic 20.0%
!! AATTTAATTACTATGTACCA+TGG - chr7.1:68510121-68510140 MS.gene071273:intron 20.0%
!! ATGAATGAACTATAATTAGT+TGG - chr7.1:68510462-68510481 MS.gene071273:intron 20.0%
!! TACTGAAAAGAAAACAAAAA+CGG + chr7.1:68510385-68510404 None:intergenic 20.0%
!! TCAAAAACGTAATTCAAAAA+GGG - chr7.1:68509942-68509961 MS.gene071273:intron 20.0%
!! TTCAAAAACGTAATTCAAAA+AGG - chr7.1:68509941-68509960 MS.gene071273:intron 20.0%
!!! AAAAAGAAACTTAGCTTTAT+AGG + chr7.1:68510559-68510578 None:intergenic 20.0%
!!! AACTTTGGTTTTCTTTATTA+TGG - chr7.1:68510494-68510513 MS.gene071273:intron 20.0%
!!! CATTTTAGTATGTTTAGTTT+TGG - chr7.1:68510734-68510753 MS.gene071273:CDS 20.0%
!!! TAAATTGTTTACTGACTTAT+TGG - chr7.1:68511098-68511117 MS.gene071273:CDS 20.0%
! AACAGTAAAAGACTCTTATT+AGG - chr7.1:68511361-68511380 MS.gene071273:CDS 25.0%
! AATTTGAACTATGGATATCA+TGG - chr7.1:68510927-68510946 MS.gene071273:CDS 25.0%
! GTTATAATAGGAATTTCTCT+CGG - chr7.1:68510222-68510241 MS.gene071273:intron 25.0%
! TATAGAAAACACATAACTTG+TGG + chr7.1:68511036-68511055 None:intergenic 25.0%
! TGCCATATAAATTAAGATTC+CGG + chr7.1:68511296-68511315 None:intergenic 25.0%
! TTGTTGAAAACTTAAAACCA+TGG + chr7.1:68510141-68510160 None:intergenic 25.0%
!! ACTTTTCATCAACTTTTTGA+AGG - chr7.1:68510291-68510310 MS.gene071273:intron 25.0%
!! ATAGAAAACACATAACTTGT+GGG + chr7.1:68511035-68511054 None:intergenic 25.0%
!! GCATACTAAAAAGTGATTTT+TGG + chr7.1:68510833-68510852 None:intergenic 25.0%
!! GTTGATCTTTTCTTGTATTA+GGG + chr7.1:68511077-68511096 None:intergenic 25.0%
!! TCTTAATTCACCTTGTTTAA+AGG - chr7.1:68509825-68509844 MS.gene071273:CDS 25.0%
!!! AGTTGGTATTTTTCAAACTT+TGG - chr7.1:68510479-68510498 MS.gene071273:intron 25.0%
!!! GCTAAGTTTCTTTTTGTTTT+CGG - chr7.1:68510564-68510583 MS.gene071273:intron 25.0%
AGCCGGAATCTTAATTTATA+TGG - chr7.1:68511291-68511310 MS.gene071273:CDS 30.0%
GAATGTATCTATTGCAATCA+TGG - chr7.1:68511150-68511169 MS.gene071273:CDS 30.0%
TGTGATTTAATAAGGGAGTT+TGG + chr7.1:68510716-68510735 None:intergenic 30.0%
TTGTTTAAAGGATCATCCTT+GGG - chr7.1:68509837-68509856 MS.gene071273:intron 30.0%
! GGTTGATCTTTTCTTGTATT+AGG + chr7.1:68511078-68511097 None:intergenic 30.0%
! TTGATACAATTAGAGTACCT+GGG + chr7.1:68510340-68510359 None:intergenic 30.0%
!! ACGTTTTTGAAAATAAGCAG+TGG + chr7.1:68509932-68509951 None:intergenic 30.0%
AAGCTGCTATCTTGTAAACA+AGG + chr7.1:68509636-68509655 None:intergenic 35.0%
AGAATGATGTAGAGCATGAA+GGG - chr7.1:68509977-68509996 MS.gene071273:intron 35.0%
AGCTGCTATCTTGTAAACAA+GGG + chr7.1:68509635-68509654 None:intergenic 35.0%
ATACTAGTTGCAAGTGCAAT+CGG - chr7.1:68509664-68509683 MS.gene071273:CDS 35.0%
CAAGGATGATCCTTTAAACA+AGG + chr7.1:68509838-68509857 None:intergenic 35.0%
CTTCAACAATAAGAGCCTTA+GGG + chr7.1:68511252-68511271 None:intergenic 35.0%
CTTGTTTAAAGGATCATCCT+TGG - chr7.1:68509836-68509855 MS.gene071273:CDS 35.0%
GTTGTTCACTCGGTTATAAT+AGG - chr7.1:68510210-68510229 MS.gene071273:intron 35.0%
TATCTTGTAAACAAGGGCTT+TGG + chr7.1:68509629-68509648 None:intergenic 35.0%
TCATTATAGGTGCTAGAGTT+GGG - chr7.1:68510183-68510202 MS.gene071273:intron 35.0%
TGCATTCTATCTCTTGTACT+TGG - chr7.1:68511385-68511404 MS.gene071273:CDS 35.0%
TGTTTAAAGGATCATCCTTG+GGG - chr7.1:68509838-68509857 MS.gene071273:intron 35.0%
TTACCTGTGATATAACCCTA+TGG + chr7.1:68510083-68510102 None:intergenic 35.0%
TTCATTATAGGTGCTAGAGT+TGG - chr7.1:68510182-68510201 MS.gene071273:intron 35.0%
TTTATGACCAATGCATTAGC+TGG - chr7.1:68510679-68510698 MS.gene071273:CDS 35.0%
! CTTGATACAATTAGAGTACC+TGG + chr7.1:68510341-68510360 None:intergenic 35.0%
! GTGATGGAAAAGATGAAGAT+AGG - chr7.1:68509596-68509615 MS.gene071273:CDS 35.0%
! GTTATTAAAGCTTTTGCAGC+TGG - chr7.1:68509751-68509770 MS.gene071273:CDS 35.0%
! GTTCTTTTCTTTGACTACTC+CGG - chr7.1:68511177-68511196 MS.gene071273:CDS 35.0%
! TTTTCCATTAGCCGAATTTG+TGG - chr7.1:68509864-68509883 MS.gene071273:intron 35.0%
!! CATCAACTTTTTGAAGGCAT+GGG - chr7.1:68510297-68510316 MS.gene071273:intron 35.0%
!! TCATCAACTTTTTGAAGGCA+TGG - chr7.1:68510296-68510315 MS.gene071273:intron 35.0%
!!! CATGTCTCTTTTAGCCTTAT+GGG - chr7.1:68511417-68511436 MS.gene071273:CDS 35.0%
!!! TTTTGCAGCTGGTGTTATTT+TGG - chr7.1:68509762-68509781 MS.gene071273:CDS 35.0%
AAAGTTAATGCAGCTACGAG+TGG + chr7.1:68510276-68510295 None:intergenic 40.0%
AGAGCACATAGCCACAAATT+CGG + chr7.1:68509878-68509897 None:intergenic 40.0%
ATAGCCACAAATTCGGCTAA+TGG + chr7.1:68509871-68509890 None:intergenic 40.0%
ATCAGAACTTCTTCGCCATA+GGG - chr7.1:68510065-68510084 MS.gene071273:intron 40.0%
CCTAAGGCTCTTATTGTTGA+AGG - chr7.1:68511250-68511269 MS.gene071273:CDS 40.0%
CCTTCAACAATAAGAGCCTT+AGG + chr7.1:68511253-68511272 None:intergenic 40.0%
GAGAATGATGTAGAGCATGA+AGG - chr7.1:68509976-68509995 MS.gene071273:intron 40.0%
GTATCACTTTGCCGAGAAAA+GGG + chr7.1:68509699-68509718 None:intergenic 40.0%
GTTCATACACATGCATCACA+CGG - chr7.1:68510009-68510028 MS.gene071273:intron 40.0%
TTATGATGAGAACAGCCCTA+AGG - chr7.1:68511234-68511253 MS.gene071273:CDS 40.0%
TTTCGATCCAGCTAATGCAT+TGG + chr7.1:68510689-68510708 None:intergenic 40.0%
TTTCTTTGACTACTCCGGTA+GGG - chr7.1:68511182-68511201 MS.gene071273:CDS 40.0%
! CTGTTAGTGTTGGGATTATG+AGG + chr7.1:68509561-68509580 None:intergenic 40.0%
! GGTGTTTGTATCCCTTTTCT+CGG - chr7.1:68509685-68509704 MS.gene071273:CDS 40.0%
! TAGGGATTGGAATTGGTCTA+GGG - chr7.1:68511200-68511219 MS.gene071273:CDS 40.0%
! TTTTCTTTGACTACTCCGGT+AGG - chr7.1:68511181-68511200 MS.gene071273:CDS 40.0%
!! TTAAGACTCTCAGAAGCATC+CGG + chr7.1:68509811-68509830 None:intergenic 40.0%
!!! GCATGTCTCTTTTAGCCTTA+TGG - chr7.1:68511416-68511435 MS.gene071273:CDS 40.0%
!!! TATTTTTCGGGGCTTAATGC+AGG + chr7.1:68509721-68509740 None:intergenic 40.0%
ACTTGGATGCTGTATAACCC+AGG - chr7.1:68510320-68510339 MS.gene071273:intron 45.0%
AGACCAATTCCAATCCCTAC+CGG + chr7.1:68511199-68511218 None:intergenic 45.0%
ATCTTCAATGCAGCTTCAGC+CGG - chr7.1:68511274-68511293 MS.gene071273:CDS 45.0%
ATGGTCATGCCTCTACAGAT+GGG - chr7.1:68510040-68510059 MS.gene071273:intron 45.0%
CATCAGAACTTCTTCGCCAT+AGG - chr7.1:68510064-68510083 MS.gene071273:intron 45.0%
CTATCTCTTGTACTTGGAGC+TGG - chr7.1:68511391-68511410 MS.gene071273:CDS 45.0%
GCTAATGGAAAATCACCCCA+AGG + chr7.1:68509856-68509875 None:intergenic 45.0%
GGTATCACTTTGCCGAGAAA+AGG + chr7.1:68509700-68509719 None:intergenic 45.0%
TCCATCACATGTACCTTCTG+CGG + chr7.1:68509584-68509603 None:intergenic 45.0%
TCGCCATAGGGTTATATCAC+AGG - chr7.1:68510077-68510096 MS.gene071273:intron 45.0%
TTCTGATGACCCATCTGTAG+AGG + chr7.1:68510052-68510071 None:intergenic 45.0%
! GTAGGGATTGGAATTGGTCT+AGG - chr7.1:68511199-68511218 MS.gene071273:CDS 45.0%
! GTTGGGTATCGTTGTTCACT+CGG - chr7.1:68510200-68510219 MS.gene071273:intron 45.0%
! TGCTATGGGGACTCTTTTGA+TGG - chr7.1:68509897-68509916 MS.gene071273:intron 45.0%
! TTGGAAGTGCAATCACTTGC+AGG - chr7.1:68511117-68511136 MS.gene071273:CDS 45.0%
!! CTTTTTGAAGGCATGGGACT+TGG - chr7.1:68510303-68510322 MS.gene071273:intron 45.0%
!! TAAGACTCTCAGAAGCATCC+GGG + chr7.1:68509810-68509829 None:intergenic 45.0%
!!! AACAAAAAATATATATTTTT+CGG + chr7.1:68509734-68509753 None:intergenic 5.0%
ACTCCGGTAGGGATTGGAAT+TGG - chr7.1:68511193-68511212 MS.gene071273:CDS 50.0%
CATGGTCATGCCTCTACAGA+TGG - chr7.1:68510039-68510058 MS.gene071273:intron 50.0%
CTTCTGCGGCTGTTAGTGTT+GGG + chr7.1:68509570-68509589 None:intergenic 50.0%
GTGGCTATGTGCTCTGCTAT+GGG - chr7.1:68509883-68509902 MS.gene071273:intron 50.0%
TGGCTATGTGCTCTGCTATG+GGG - chr7.1:68509884-68509903 MS.gene071273:intron 50.0%
TGTGGCTATGTGCTCTGCTA+TGG - chr7.1:68509882-68509901 MS.gene071273:intron 50.0%
TTGACTACTCCGGTAGGGAT+TGG - chr7.1:68511187-68511206 MS.gene071273:CDS 50.0%
! TGCAGCTACGAGTGGCTTTA+TGG + chr7.1:68510268-68510287 None:intergenic 50.0%
!!! GCTGGTGTTATTTTGGCCAC+CGG - chr7.1:68509769-68509788 MS.gene071273:CDS 50.0%
CCAACACTAACAGCCGCAGA+AGG - chr7.1:68509568-68509587 MS.gene071273:CDS 55.0%
CCTTCTGCGGCTGTTAGTGT+TGG + chr7.1:68509571-68509590 None:intergenic 55.0%
CGGTTTCGTTCATGTGCTCC+CGG - chr7.1:68509789-68509808 MS.gene071273:CDS 55.0%
GAGCACATGAACGAAACCGG+TGG + chr7.1:68509788-68509807 None:intergenic 55.0%
GCATCACACGGTCATGCACA+TGG - chr7.1:68510021-68510040 MS.gene071273:intron 55.0%
! CGGGAGCACATGAACGAAAC+CGG + chr7.1:68509791-68509810 None:intergenic 55.0%
! GCCGCAGAAGGTACATGTGA+TGG - chr7.1:68509580-68509599 MS.gene071273:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 68509550 68511444 68509550 ID=MS.gene071273
chr7.1 mRNA 68509550 68511444 68509550 ID=MS.gene071273.t1;Parent=MS.gene071273
chr7.1 exon 68510896 68511444 68510896 ID=MS.gene071273.t1.exon1;Parent=MS.gene071273.t1
chr7.1 CDS 68510896 68511444 68510896 ID=cds.MS.gene071273.t1;Parent=MS.gene071273.t1
chr7.1 exon 68510653 68510802 68510653 ID=MS.gene071273.t1.exon2;Parent=MS.gene071273.t1
chr7.1 CDS 68510653 68510802 68510653 ID=cds.MS.gene071273.t1;Parent=MS.gene071273.t1
chr7.1 exon 68509550 68509855 68509550 ID=MS.gene071273.t1.exon3;Parent=MS.gene071273.t1
chr7.1 CDS 68509550 68509855 68509550 ID=cds.MS.gene071273.t1;Parent=MS.gene071273.t1
Gene Sequence

>MS.gene071273

ATGATATTCCTCATAATCCCAACACTAACAGCCGCAGAAGGTACATGTGATGGAAAAGATGAAGATAGGAACAAAGCCAAAGCCCTTGTTTACAAGATAGCAGCTTTCGCATCAATACTAGTTGCAAGTGCAATCGGTGTTTGTATCCCTTTTCTCGGCAAAGTGATACCTGCATTAAGCCCCGAAAAATATATATTTTTTGTTATTAAAGCTTTTGCAGCTGGTGTTATTTTGGCCACCGGTTTCGTTCATGTGCTCCCGGATGCTTCTGAGAGTCTTAATTCACCTTGTTTAAAGGATCATCCTTGGGGTGATTTTCCATTAGCCGAATTTGTGGCTATGTGCTCTGCTATGGGGACTCTTTTGATGGATATTTATGCCACTGCTTATTTTCAAAAACGTAATTCAAAAAGGGCATCAGTACAAGAGAATGATGTAGAGCATGAAGGGCAAGTGCATGTTCATACACATGCATCACACGGTCATGCACATGGTCATGCCTCTACAGATGGGTCATCAGAACTTCTTCGCCATAGGGTTATATCACAGGTAAAAGAATCATATATATAAAAATTTAATTACTATGTACCATGGTTTTAAGTTTTCAACAATTGATTGTTTTGAATTTTGATTTCATTATAGGTGCTAGAGTTGGGTATCGTTGTTCACTCGGTTATAATAGGAATTTCTCTCGGTGCTTCAGAGAATGCTAAGACCATAAAGCCACTCGTAGCTGCATTAACTTTTCATCAACTTTTTGAAGGCATGGGACTTGGATGCTGTATAACCCAGGTACTCTAATTGTATCAAGTTACTTTGACTGTACATGATACCGTTTTTGTTTTCTTTTCAGTAGTTAACAATCATGTATTTTCTATGTTTAGTGTGAAACATGAAAGAAACTAAGTAAATATGAATGAACTATAATTAGTTGGTATTTTTCAAACTTTGGTTTTCTTTATTATGGTTCACATATACGTAATGTGTACTTTTCATCACACTTTAACCTATAAAGCTAAGTTTCTTTTTGTTTTCGGCCAAAATATAAAGATAAGATACTTAGTACTTAATTTATTTGACATATTTGTTGATTTTTCACATGACTTCTTATTTACTCTTGAACTATATATTTATGACCAATGCATTAGCTGGATCGAAAGATGCCAAACTCCCTTATTAAATCACATTTTAGTATGTTTAGTTTTGGAATTTATTAAATCATATTATGTTTTGGAACTCTGACTGTTTTAATCTCTTACTCTTTTTGTTTATTTTTTTTGCCAAAAATCACTTTTTAGTATGCATTTCTTAACTCTTAAAAAATAATTTAAGGTTTCACACATATCATCATTTTTTGCATGATATCTAAAGTTTTATAATTTGAACTATGGATATCATGGAATCACCATCTTAAGAATATACTATAAAAATGATTTTGATTCTTGAAATAATATAAATTTGAAATGGCAAACAAAACTGATTCCCACAAGTTATGTGTTTTCTATATTTTAAAAATCTTTTGTGCCCTAATACAAGAAAAGATCAACCTAAATTGTTTACTGACTTATTGGAAGTGCAATCACTTGCAGGCAAATTTCAAGAATGTATCTATTGCAATCATGGTCTTGTTCTTTTCTTTGACTACTCCGGTAGGGATTGGAATTGGTCTAGGGATTAGCAGTGTTTATGATGAGAACAGCCCTAAGGCTCTTATTGTTGAAGGAATCTTCAATGCAGCTTCAGCCGGAATCTTAATTTATATGGCACTTGTTGATCTTCTTGCTGCTGATTTTTTTAACTCAAAGATGCAAAACAGTAAAAGACTCTTATTAGGATGCATTCTATCTCTTGTACTTGGAGCTGGTTGCATGTCTCTTTTAGCCTTATGGGCTTAG
Protein sequence

>MS.gene071273.t1

MIFLIIPTLTAAEGTCDGKDEDRNKAKALVYKIAAFASILVASAIGVCIPFLGKVIPALSPEKYIFFVIKAFAAGVILATGFVHVLPDASESLNSPCLKDHPWGDFPLAEFVAMCSAMGTLLMDIYATAYFQKRNSKRASVQENDVEHEGQVHVHTHASHGHAHGHASTDGSSELLRHRVISQVLELGIVVHSVIIGISLGASENAKTIKPLVAALTFHQLFEGMGLGCCITQANFKNVSIAIMVLFFSLTTPVGIGIGLGISSVYDENSPKALIVEGIFNAASAGILIYMALVDLLAADFFNSKMQNSKRLLLGCILSLVLGAGCMSLLALWA