Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071298.t1 | XP_013445567.1 | 77.8 | 465 | 89 | 3 | 1 | 454 | 1 | 462 | 7.40E-156 | 560.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071298.t1 | A0A072TRW5 | 77.8 | 465 | 89 | 3 | 1 | 454 | 1 | 462 | 5.3e-156 | 560.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049382 | MS.gene071298 | 0.804385 | 2.22E-49 | -1.69E-46 |
| MS.gene050719 | MS.gene071298 | 0.808743 | 2.67E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene071298 | 0.808691 | 2.74E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene071298 | 0.824237 | 9.00E-54 | -1.69E-46 |
| MS.gene051063 | MS.gene071298 | 0.830759 | 2.45E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene071298 | 0.819981 | 8.73E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene071298 | 0.800412 | 1.46E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene071298 | 0.802505 | 5.44E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene071298 | 0.804279 | 2.33E-49 | -1.69E-46 |
| MS.gene053437 | MS.gene071298 | 0.806709 | 7.21E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene071298 | 0.837654 | 4.58E-57 | -1.69E-46 |
| MS.gene057057 | MS.gene071298 | 0.817077 | 3.98E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene071298 | 0.810211 | 1.29E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene071298 | 0.829855 | 4.08E-55 | -1.69E-46 |
| MS.gene057234 | MS.gene071298 | 0.822018 | 2.97E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene071298 | 0.806526 | 7.88E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene071298 | 0.820972 | 5.17E-53 | -1.69E-46 |
| MS.gene058646 | MS.gene071298 | 0.806857 | 6.71E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene071298 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene071298 | 0.863295 | 2.76E-64 | -1.69E-46 |
| MS.gene059171 | MS.gene071298 | 0.804022 | 2.64E-49 | -1.69E-46 |
| MS.gene059898 | MS.gene071298 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene071298 | 0.832778 | 7.79E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071298.t1 | MTR_8g464490 | 86.695 | 466 | 46 | 4 | 1 | 454 | 1 | 462 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGGAAGTTCAAGTTCTA+TGG | 0.256545 | 8.2:-45791811 | MS.gene071298:CDS |
| AGGGGTCGTAAATCGTCTTC+TGG | 0.277018 | 8.2:-45791468 | MS.gene071298:CDS |
| GATGCAAAAGAAGGATTATA+AGG | 0.286391 | 8.2:-45791736 | MS.gene071298:CDS |
| AACACTACAACAACAAGAAT+TGG | 0.303709 | 8.2:-45792046 | MS.gene071298:CDS |
| AAACTCTACCATCGGTAAAA+AGG | 0.306602 | 8.2:-45790863 | MS.gene071298:CDS |
| TTGAAACAAGGTTCTAGTTT+TGG | 0.317988 | 8.2:-45791960 | MS.gene071298:CDS |
| AAAGGAAAAGGAATAATAAT+AGG | 0.322246 | 8.2:-45791306 | MS.gene071298:CDS |
| TGTTGGTAACATGAAGTTTA+GGG | 0.341584 | 8.2:-45791487 | MS.gene071298:CDS |
| ATGTTGGTAACATGAAGTTT+AGG | 0.350395 | 8.2:-45791488 | MS.gene071298:CDS |
| TTTATTCACTGTCAATTTCC+TGG | 0.361000 | 8.2:+45790810 | None:intergenic |
| AAGTTCAAGTACAATGTTAC+AGG | 0.361419 | 8.2:-45790902 | MS.gene071298:CDS |
| CAGTGAGTAGTACCAGTCTT+AGG | 0.383306 | 8.2:-45791551 | MS.gene071298:CDS |
| TCAGGACCAGCATAAATATA+TGG | 0.383753 | 8.2:-45791616 | MS.gene071298:CDS |
| ATGCAAAAGAAGGATTATAA+GGG | 0.390439 | 8.2:-45791735 | MS.gene071298:CDS |
| ACACTACAACAACAAGAATT+GGG | 0.396615 | 8.2:-45792045 | MS.gene071298:CDS |
| CGGCATCTTCATCGATCATT+GGG | 0.408596 | 8.2:-45792929 | MS.gene071298:CDS |
| ATCAGCAGCTTTGACAATAC+TGG | 0.420962 | 8.2:-45790695 | MS.gene071298:intron |
| AGCTGTAATGGAAGATGTCT+TGG | 0.424271 | 8.2:+45791335 | None:intergenic |
| ACGGCATCTTCATCGATCAT+TGG | 0.427822 | 8.2:-45792930 | MS.gene071298:CDS |
| AAGGCTAGTTGCAATCTTGT+TGG | 0.439609 | 8.2:-45791828 | MS.gene071298:CDS |
| TCAGTTAGAAGCGTTAGTTT+TGG | 0.442082 | 8.2:-45791672 | MS.gene071298:CDS |
| GGGGTCGTAAATCGTCTTCT+GGG | 0.444556 | 8.2:-45791467 | MS.gene071298:CDS |
| ATCCTTCTAGCTGGATTACC+TGG | 0.444687 | 8.2:+45789808 | None:intergenic |
| AACCAGGTAATCCAGCTAGA+AGG | 0.446703 | 8.2:-45789810 | MS.gene071298:CDS |
| CATCAATGTTGCAAAGTCAT+TGG | 0.449370 | 8.2:-45791274 | MS.gene071298:intron |
| CGCAAGTAAATCCTTCTAGC+TGG | 0.462244 | 8.2:+45789799 | None:intergenic |
| TCCATTACAGCTGAAGGAAA+AGG | 0.468562 | 8.2:-45791324 | MS.gene071298:CDS |
| CGAAAATCACAGATAAGAAC+AGG | 0.470754 | 8.2:-45791377 | MS.gene071298:CDS |
| GATAAGAACAGGTGCAATCC+TGG | 0.472976 | 8.2:-45791366 | MS.gene071298:CDS |
| CTTGATTTCGAGACTGAAGA+AGG | 0.477777 | 8.2:+45792074 | None:intergenic |
| TCAAATGTTAGCAGGACAAA+AGG | 0.480174 | 8.2:-45791912 | MS.gene071298:CDS |
| GATGTCTTGGATTTATTACC+AGG | 0.480862 | 8.2:+45791348 | None:intergenic |
| AGAACATAATCGTCAACATA+AGG | 0.482359 | 8.2:-45790731 | MS.gene071298:CDS |
| AATCAATGTCAAATGTTAGC+AGG | 0.483536 | 8.2:-45791920 | MS.gene071298:CDS |
| ACAAACTTAGCTTCATAACT+AGG | 0.487569 | 8.2:+45791417 | None:intergenic |
| ATTCTCTTTCCCCTTGTCAA+AGG | 0.493927 | 8.2:+45790837 | None:intergenic |
| AGTAGAAGCCTCAAGAGTTC+AGG | 0.496950 | 8.2:-45791634 | MS.gene071298:CDS |
| TCACTCTGGTGAGGAGGCAG+TGG | 0.497952 | 8.2:-45792111 | MS.gene071298:CDS |
| TTGATTGTTGAAGCTAACTC+TGG | 0.505940 | 8.2:-45792419 | MS.gene071298:CDS |
| TCTTCTGGGAAGTCTAGTGT+TGG | 0.508703 | 8.2:-45791453 | MS.gene071298:CDS |
| ACAGCTGAAGGAAAAGGAAA+AGG | 0.511415 | 8.2:-45791318 | MS.gene071298:CDS |
| ATGCTGGTCCTGAACTCTTG+AGG | 0.511672 | 8.2:+45791626 | None:intergenic |
| TGAGGAGGCAGTGGCGTCGC+CGG | 0.512983 | 8.2:-45792102 | MS.gene071298:CDS |
| AAAAGTCTCAAAAGTGGAGA+TGG | 0.515736 | 8.2:-45791511 | MS.gene071298:CDS |
| AAGTCAAAATTTGCTCACTC+TGG | 0.517195 | 8.2:-45792125 | MS.gene071298:CDS |
| AACAATTTGAAGCACCTATG+TGG | 0.521866 | 8.2:-45792448 | MS.gene071298:CDS |
| GGATTATAAGGGGCATAAGA+AGG | 0.525077 | 8.2:-45791724 | MS.gene071298:CDS |
| ATGAAGAAGGTGTTCTTGCA+AGG | 0.525891 | 8.2:-45790780 | MS.gene071298:CDS |
| ACTCGCGAGCAGACAACTGA+TGG | 0.536082 | 8.2:+45792150 | None:intergenic |
| AACACCAAAAGTCTCAAAAG+TGG | 0.540910 | 8.2:-45791517 | MS.gene071298:CDS |
| CTCTTGTATATAGGGTGAGT+GGG | 0.541586 | 8.2:-45789640 | MS.gene071298:intron |
| ACATCTTCCATTACAGCTGA+AGG | 0.548952 | 8.2:-45791330 | MS.gene071298:CDS |
| GGAAAAGGAATAATAATAGG+AGG | 0.550465 | 8.2:-45791303 | MS.gene071298:CDS |
| CTTCTGGGAAGTCTAGTGTT+GGG | 0.550470 | 8.2:-45791452 | MS.gene071298:CDS |
| TGAGAGTATGATGCAAAAGA+AGG | 0.550843 | 8.2:-45791745 | MS.gene071298:CDS |
| ACACCTCCATATATTTATGC+TGG | 0.557766 | 8.2:+45791610 | None:intergenic |
| TCAAAAGTGGAGATGGATGT+TGG | 0.563203 | 8.2:-45791504 | MS.gene071298:CDS |
| CAATGTGAGGCAAAGAAACC+AGG | 0.565344 | 8.2:-45789826 | MS.gene071298:CDS |
| TCTTCAGTCTCGAAATCAAG+AGG | 0.567981 | 8.2:-45792071 | MS.gene071298:CDS |
| ACTCTTGTATATAGGGTGAG+TGG | 0.571473 | 8.2:-45789641 | MS.gene071298:intron |
| CACTACAACAACAAGAATTG+GGG | 0.577350 | 8.2:-45792044 | MS.gene071298:CDS |
| AAACAGCAGGGTTTAAGCAA+GGG | 0.581786 | 8.2:-45791990 | MS.gene071298:CDS |
| CAACATAAGGATGACAAAGC+AGG | 0.583166 | 8.2:-45790718 | MS.gene071298:CDS |
| GTTTGTTTCAAAGCAGCAGA+GGG | 0.585395 | 8.2:-45791400 | MS.gene071298:CDS |
| ATTTGCTCACTCTGGTGAGG+AGG | 0.588243 | 8.2:-45792117 | MS.gene071298:CDS |
| GAGACTGAAGAAGGAAGTGC+CGG | 0.589263 | 8.2:+45792083 | None:intergenic |
| TGAAGAAGGTGTTCTTGCAA+GGG | 0.589743 | 8.2:-45790779 | MS.gene071298:CDS |
| ACAATTTGAAGCACCTATGT+GGG | 0.592746 | 8.2:-45792447 | MS.gene071298:CDS |
| AACAGCAGGGTTTAAGCAAG+GGG | 0.595246 | 8.2:-45791989 | MS.gene071298:CDS |
| TAAACAGCAGGGTTTAAGCA+AGG | 0.595298 | 8.2:-45791991 | MS.gene071298:CDS |
| ACAATCAAATCTGCCCACAT+AGG | 0.600457 | 8.2:+45792434 | None:intergenic |
| GTTGCAGAACTGATGATGAC+TGG | 0.605883 | 8.2:-45792293 | MS.gene071298:intron |
| AGGGGAAAGAGAATGCTACC+AGG | 0.607255 | 8.2:-45790828 | MS.gene071298:CDS |
| ATGGAAGCTTCTAAGAAGAA+CGG | 0.610680 | 8.2:-45792949 | MS.gene071298:CDS |
| TGAAAGGTCTACAAGAAGCA+TGG | 0.613540 | 8.2:-45791775 | MS.gene071298:CDS |
| CAGCTAGAAGGATTTACTTG+CGG | 0.614400 | 8.2:-45789798 | MS.gene071298:intron |
| AAAATTTGCTCACTCTGGTG+AGG | 0.622334 | 8.2:-45792120 | MS.gene071298:CDS |
| AAGGGGAGGTGCTTGAAACA+AGG | 0.630756 | 8.2:-45791972 | MS.gene071298:CDS |
| AAAAGGAGGCCTTTGACAAG+GGG | 0.632559 | 8.2:-45790846 | MS.gene071298:CDS |
| TGCAAAAGAAGGATTATAAG+GGG | 0.638284 | 8.2:-45791734 | MS.gene071298:CDS |
| GAAGAAGGTGTTCTTGCAAG+GGG | 0.643592 | 8.2:-45790778 | MS.gene071298:CDS |
| AGTTCAAGTACAATGTTACA+GGG | 0.653116 | 8.2:-45790901 | MS.gene071298:CDS |
| CAGGGGAAAAGCTATGTCGA+AGG | 0.653146 | 8.2:-45791847 | MS.gene071298:CDS |
| AGCAGGGTTTAAGCAAGGGG+AGG | 0.660854 | 8.2:-45791986 | MS.gene071298:CDS |
| GTTGGTAACATGAAGTTTAG+GGG | 0.667862 | 8.2:-45791486 | MS.gene071298:CDS |
| AGTTTGTTTCAAAGCAGCAG+AGG | 0.674189 | 8.2:-45791401 | MS.gene071298:CDS |
| GGACCAGCATAAATATATGG+AGG | 0.674367 | 8.2:-45791613 | MS.gene071298:CDS |
| AAAAGTCAACGATCAATGTG+AGG | 0.680009 | 8.2:-45789839 | MS.gene071298:CDS |
| ACTACAACAACAAGAATTGG+GGG | 0.688313 | 8.2:-45792043 | MS.gene071298:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTAAAAAGTAAATTAT+AGG | + | chr8.2:45791596-45791615 | None:intergenic | 10.0% |
| !!! | ATTAACAGTTATTAATTTTA+GGG | - | chr8.2:45790044-45790063 | MS.gene071298:intron | 10.0% |
| !!! | TAGAATGATAATATTTTTTT+TGG | + | chr8.2:45792352-45792371 | None:intergenic | 10.0% |
| !!! | TTGATTTTTTTATTTTGTTT+TGG | - | chr8.2:45790266-45790285 | MS.gene071298:intron | 10.0% |
| !! | AATTATTATCACATTATTAC+AGG | - | chr8.2:45792723-45792742 | MS.gene071298:intron | 15.0% |
| !! | ATTATTATCACATTATTACA+GGG | - | chr8.2:45792724-45792743 | MS.gene071298:intron | 15.0% |
| !! | TGAATAAAGATAAAATTTGT+AGG | + | chr8.2:45791384-45791403 | None:intergenic | 15.0% |
| !!! | CATATCTAGAATTAAATATT+TGG | + | chr8.2:45792256-45792275 | None:intergenic | 15.0% |
| !!! | CATTAACAGTTATTAATTTT+AGG | - | chr8.2:45790043-45790062 | MS.gene071298:intron | 15.0% |
| !!! | GCTATTAATTTATGTTTTTA+AGG | - | chr8.2:45790075-45790094 | MS.gene071298:intron | 15.0% |
| !! | AAAGGAAAAGGAATAATAAT+AGG | - | chr8.2:45791280-45791299 | MS.gene071298:CDS | 20.0% |
| !! | AAGTAAATTATAGGATATCT+AGG | + | chr8.2:45791587-45791606 | None:intergenic | 20.0% |
| !! | AATAAAAATTGCAATGAAGA+AGG | - | chr8.2:45791793-45791812 | MS.gene071298:CDS | 20.0% |
| !! | AATTGAACATGTTGTAAAAT+TGG | + | chr8.2:45790020-45790039 | None:intergenic | 20.0% |
| !! | GTTGTAATTATATTACATAC+AGG | - | chr8.2:45790115-45790134 | MS.gene071298:intron | 20.0% |
| !! | TATGAAATGTTGTCAAATAA+TGG | + | chr8.2:45792465-45792484 | None:intergenic | 20.0% |
| !! | TGGATAAAAAGAATTATGAA+AGG | - | chr8.2:45790795-45790814 | MS.gene071298:CDS | 20.0% |
| !!! | TATTAATCTGAATGTTTTGT+TGG | - | chr8.2:45790571-45790590 | MS.gene071298:intron | 20.0% |
| !!! | TGATAATATTTTTTTTGGAC+AGG | + | chr8.2:45792347-45792366 | None:intergenic | 20.0% |
| ! | AACAAAAAAAACTCTACCAT+CGG | - | chr8.2:45791715-45791734 | MS.gene071298:CDS | 25.0% |
| ! | AACCTAAAAACAATGTGTAA+TGG | + | chr8.2:45789828-45789847 | None:intergenic | 25.0% |
| ! | AATTATAGGATATCTAGGAA+AGG | + | chr8.2:45791582-45791601 | None:intergenic | 25.0% |
| ! | ACCTAAAAACAATGTGTAAT+GGG | + | chr8.2:45789827-45789846 | None:intergenic | 25.0% |
| ! | ATGCAAAAGAAGGATTATAA+GGG | - | chr8.2:45790851-45790870 | MS.gene071298:CDS | 25.0% |
| ! | TGTACTAACTCTTGTATATA+GGG | - | chr8.2:45792938-45792957 | MS.gene071298:CDS | 25.0% |
| ! | TTTGTATTCCTCAAAAAGAA+TGG | + | chr8.2:45792831-45792850 | None:intergenic | 25.0% |
| !! | ATAACTGTCACTTAATACAA+AGG | + | chr8.2:45791537-45791556 | None:intergenic | 25.0% |
| !! | TAACTGTCACTTAATACAAA+GGG | + | chr8.2:45791536-45791555 | None:intergenic | 25.0% |
| !! | TAATAATTATGCATTAGCCT+TGG | + | chr8.2:45792711-45792730 | None:intergenic | 25.0% |
| !! | TGATGCATTTGATAATCATT+AGG | + | chr8.2:45791480-45791499 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGATCGAAAAGAT+TGG | + | chr8.2:45792212-45792231 | None:intergenic | 25.0% |
| !!! | TTATTTGTTCTTCGTTTTTG+TGG | - | chr8.2:45789880-45789899 | MS.gene071298:intron | 25.0% |
| !!! | TTTTCCCTTATTTTGAAACT+GGG | + | chr8.2:45792873-45792892 | None:intergenic | 25.0% |
| !!! | TTTTTCCCTTATTTTGAAAC+TGG | + | chr8.2:45792874-45792893 | None:intergenic | 25.0% |
| !!! | TTTTTTGGGTTTTCCATTTT+CGG | - | chr8.2:45790354-45790373 | MS.gene071298:intron | 25.0% |
| !!! | TTTTTTGTTTCAATGCTCTT+TGG | - | chr8.2:45792677-45792696 | MS.gene071298:intron | 25.0% |
| AAAAATGCATGACTTGAAGA+CGG | + | chr8.2:45791350-45791369 | None:intergenic | 30.0% | |
| AACACTACAACAACAAGAAT+TGG | - | chr8.2:45790540-45790559 | MS.gene071298:intron | 30.0% | |
| AACCCAAAAAATATTCCAGA+AGG | + | chr8.2:45790345-45790364 | None:intergenic | 30.0% | |
| AACCCTAAAAATGTGAAATG+CGG | + | chr8.2:45789740-45789759 | None:intergenic | 30.0% | |
| AAGTTCAAGTACAATGTTAC+AGG | - | chr8.2:45791684-45791703 | MS.gene071298:CDS | 30.0% | |
| AATCAATGTCAAATGTTAGC+AGG | - | chr8.2:45790666-45790685 | MS.gene071298:intron | 30.0% | |
| ACAAACTTAGCTTCATAACT+AGG | + | chr8.2:45791172-45791191 | None:intergenic | 30.0% | |
| ACACTACAACAACAAGAATT+GGG | - | chr8.2:45790541-45790560 | MS.gene071298:intron | 30.0% | |
| ACCCAAAAAATATTCCAGAA+GGG | + | chr8.2:45790344-45790363 | None:intergenic | 30.0% | |
| AGAACATAATCGTCAACATA+AGG | - | chr8.2:45791855-45791874 | MS.gene071298:CDS | 30.0% | |
| AGGATTGATGAGTGAAAAAT+CGG | - | chr8.2:45790694-45790713 | MS.gene071298:intron | 30.0% | |
| AGTTCAAGTACAATGTTACA+GGG | - | chr8.2:45791685-45791704 | MS.gene071298:CDS | 30.0% | |
| ATTATCCTGTAAACTTTCCA+AGG | - | chr8.2:45792114-45792133 | MS.gene071298:CDS | 30.0% | |
| GATGCAAAAGAAGGATTATA+AGG | - | chr8.2:45790850-45790869 | MS.gene071298:CDS | 30.0% | |
| GGAAAAGGAATAATAATAGG+AGG | - | chr8.2:45791283-45791302 | MS.gene071298:CDS | 30.0% | |
| GTGTACTAACTCTTGTATAT+AGG | - | chr8.2:45792937-45792956 | MS.gene071298:CDS | 30.0% | |
| TGAAAATATGTGAGTGAGTT+TGG | - | chr8.2:45790193-45790212 | MS.gene071298:intron | 30.0% | |
| TGCAAAAGAAGGATTATAAG+GGG | - | chr8.2:45790852-45790871 | MS.gene071298:CDS | 30.0% | |
| TTGGAAAGTTTACAGGATAA+TGG | + | chr8.2:45792115-45792134 | None:intergenic | 30.0% | |
| TTTATTCACTGTCAATTTCC+TGG | + | chr8.2:45791779-45791798 | None:intergenic | 30.0% | |
| ! | ATAGCAATCCATTCTTTTTG+AGG | - | chr8.2:45792820-45792839 | MS.gene071298:intron | 30.0% |
| ! | ATTCCGCATTTCACATTTTT+AGG | - | chr8.2:45789734-45789753 | MS.gene071298:intron | 30.0% |
| ! | CAACTTAATTTTTCTTGCCA+TGG | - | chr8.2:45792223-45792242 | MS.gene071298:intron | 30.0% |
| ! | GACTCATTGAAGCTTTATAT+TGG | - | chr8.2:45792911-45792930 | MS.gene071298:intron | 30.0% |
| ! | GTTGCAATCAAATCATTTTC+AGG | - | chr8.2:45790411-45790430 | MS.gene071298:intron | 30.0% |
| ! | TGAGTGAGTTTGGATTTTTA+TGG | - | chr8.2:45790203-45790222 | MS.gene071298:intron | 30.0% |
| ! | TGCATTTGATAATCATTAGG+TGG | + | chr8.2:45791477-45791496 | None:intergenic | 30.0% |
| ! | TTCCGCATTTCACATTTTTA+GGG | - | chr8.2:45789735-45789754 | MS.gene071298:intron | 30.0% |
| !! | ATGTTGGTAACATGAAGTTT+AGG | - | chr8.2:45791098-45791117 | MS.gene071298:intron | 30.0% |
| !! | TCCCATTACACATTGTTTTT+AGG | - | chr8.2:45789823-45789842 | MS.gene071298:CDS | 30.0% |
| !! | TGTACTTCAGTTTTATGACT+TGG | - | chr8.2:45792617-45792636 | MS.gene071298:intron | 30.0% |
| !! | TGTTGGTAACATGAAGTTTA+GGG | - | chr8.2:45791099-45791118 | MS.gene071298:intron | 30.0% |
| !!! | ACACATTGTTTTTAGGTTTC+AGG | - | chr8.2:45789830-45789849 | MS.gene071298:CDS | 30.0% |
| !!! | ATCCCTTCTGGAATATTTTT+TGG | - | chr8.2:45790339-45790358 | MS.gene071298:intron | 30.0% |
| !!! | GTTCTAGTTTTGGTTATGAA+GGG | - | chr8.2:45790636-45790655 | MS.gene071298:intron | 30.0% |
| !!! | TCCCTTCTGGAATATTTTTT+GGG | - | chr8.2:45790340-45790359 | MS.gene071298:intron | 30.0% |
| !!! | TTGAAACAAGGTTCTAGTTT+TGG | - | chr8.2:45790626-45790645 | MS.gene071298:intron | 30.0% |
| AAAAGTCAACGATCAATGTG+AGG | - | chr8.2:45792747-45792766 | MS.gene071298:intron | 35.0% | |
| AAAAGTCTCAAAAGTGGAGA+TGG | - | chr8.2:45791075-45791094 | MS.gene071298:intron | 35.0% | |
| AAACTCTACCATCGGTAAAA+AGG | - | chr8.2:45791723-45791742 | MS.gene071298:CDS | 35.0% | |
| AAATATTTGGTCAGAAGCCA+TGG | + | chr8.2:45792243-45792262 | None:intergenic | 35.0% | |
| AACACCAAAAGTCTCAAAAG+TGG | - | chr8.2:45791069-45791088 | MS.gene071298:intron | 35.0% | |
| ACACCTCCATATATTTATGC+TGG | + | chr8.2:45790979-45790998 | None:intergenic | 35.0% | |
| ACTACAACAACAAGAATTGG+GGG | - | chr8.2:45790543-45790562 | MS.gene071298:intron | 35.0% | |
| AGTTGCCCAGTTTCAAAATA+AGG | - | chr8.2:45792865-45792884 | MS.gene071298:intron | 35.0% | |
| CACTACAACAACAAGAATTG+GGG | - | chr8.2:45790542-45790561 | MS.gene071298:intron | 35.0% | |
| CATCAATGTTGCAAAGTCAT+TGG | - | chr8.2:45791312-45791331 | MS.gene071298:CDS | 35.0% | |
| CGAAAATCACAGATAAGAAC+AGG | - | chr8.2:45791209-45791228 | MS.gene071298:intron | 35.0% | |
| GAAACAAAAAATGCAGCGAA+AGG | + | chr8.2:45792668-45792687 | None:intergenic | 35.0% | |
| GAATGATTAATCACGTTCCT+TGG | + | chr8.2:45792134-45792153 | None:intergenic | 35.0% | |
| GACAACATTGTTTCAACTCA+CGG | - | chr8.2:45792565-45792584 | MS.gene071298:intron | 35.0% | |
| GATGTCTTGGATTTATTACC+AGG | + | chr8.2:45791241-45791260 | None:intergenic | 35.0% | |
| GATTGATGAGTGAAAAATCG+GGG | - | chr8.2:45790696-45790715 | MS.gene071298:CDS | 35.0% | |
| GGATTGATGAGTGAAAAATC+GGG | - | chr8.2:45790695-45790714 | MS.gene071298:intron | 35.0% | |
| GTTGCCCAGTTTCAAAATAA+GGG | - | chr8.2:45792866-45792885 | MS.gene071298:intron | 35.0% | |
| GTTGCTAGACATCTCAATTA+AGG | + | chr8.2:45792054-45792073 | None:intergenic | 35.0% | |
| TATTCCAGAAGGGATTCTTA+CGG | + | chr8.2:45790334-45790353 | None:intergenic | 35.0% | |
| TCAAATGTTAGCAGGACAAA+AGG | - | chr8.2:45790674-45790693 | MS.gene071298:intron | 35.0% | |
| TCAGGACCAGCATAAATATA+TGG | - | chr8.2:45790970-45790989 | MS.gene071298:intron | 35.0% | |
| TCTGAATGAGTTAGCAAATC+TGG | - | chr8.2:45791406-45791425 | MS.gene071298:CDS | 35.0% | |
| TGTTGTCAAATAGCAGCTAT+AGG | + | chr8.2:45792552-45792571 | None:intergenic | 35.0% | |
| TTGAGGAATACAAAAACTCC+AGG | - | chr8.2:45792837-45792856 | MS.gene071298:intron | 35.0% | |
| TTGATTGTTGAAGCTAACTC+TGG | - | chr8.2:45790167-45790186 | MS.gene071298:intron | 35.0% | |
| ! | AACAATTTGAAGCACCTATG+TGG | - | chr8.2:45790138-45790157 | MS.gene071298:intron | 35.0% |
| ! | AAGTCAAAATTTGCTCACTC+TGG | - | chr8.2:45790461-45790480 | MS.gene071298:intron | 35.0% |
| ! | AATGCCTGTTTTATAAGAGC+CGG | + | chr8.2:45791433-45791452 | None:intergenic | 35.0% |
| ! | ACAATTTGAAGCACCTATGT+GGG | - | chr8.2:45790139-45790158 | MS.gene071298:intron | 35.0% |
| ! | ACTTTTGAACACAATACCAG+GGG | - | chr8.2:45790722-45790741 | MS.gene071298:CDS | 35.0% |
| ! | ATGGAAGCTTCTAAGAAGAA+CGG | - | chr8.2:45789637-45789656 | MS.gene071298:intron | 35.0% |
| ! | GACTTTTGAACACAATACCA+GGG | - | chr8.2:45790721-45790740 | MS.gene071298:CDS | 35.0% |
| ! | TACATGACTTTTCCTAAGAC+TGG | + | chr8.2:45791050-45791069 | None:intergenic | 35.0% |
| ! | TGACTTTTGAACACAATACC+AGG | - | chr8.2:45790720-45790739 | MS.gene071298:CDS | 35.0% |
| ! | TGAGAGTATGATGCAAAAGA+AGG | - | chr8.2:45790841-45790860 | MS.gene071298:CDS | 35.0% |
| ! | TGTTGGAAGTTCAAGTTCTA+TGG | - | chr8.2:45790775-45790794 | MS.gene071298:CDS | 35.0% |
| !! | GTTGGTAACATGAAGTTTAG+GGG | - | chr8.2:45791100-45791119 | MS.gene071298:intron | 35.0% |
| !! | GTTTTGTTGGATAAACAGCA+GGG | - | chr8.2:45790584-45790603 | MS.gene071298:intron | 35.0% |
| !! | TGTTTTGTTGGATAAACAGC+AGG | - | chr8.2:45790583-45790602 | MS.gene071298:intron | 35.0% |
| !!! | ATCTCCACTTTTGAGACTTT+TGG | + | chr8.2:45791076-45791095 | None:intergenic | 35.0% |
| !!! | CAGTTAGAAGCGTTAGTTTT+GGG | - | chr8.2:45790915-45790934 | MS.gene071298:CDS | 35.0% |
| !!! | GGTTCTAGTTTTGGTTATGA+AGG | - | chr8.2:45790635-45790654 | MS.gene071298:intron | 35.0% |
| !!! | TAGTTTTGGTTATGAAGGGA+AGG | - | chr8.2:45790640-45790659 | MS.gene071298:intron | 35.0% |
| !!! | TCAGTTAGAAGCGTTAGTTT+TGG | - | chr8.2:45790914-45790933 | MS.gene071298:CDS | 35.0% |
| AAAAAGGAGGCCTTTGACAA+GGG | - | chr8.2:45791739-45791758 | MS.gene071298:CDS | 40.0% | |
| AAACAGCAGGGTTTAAGCAA+GGG | - | chr8.2:45790596-45790615 | MS.gene071298:intron | 40.0% | |
| AACAACAAGAATTGGGGGAA+AGG | - | chr8.2:45790548-45790567 | MS.gene071298:intron | 40.0% | |
| AACACCTGTGTTGTCAATCA+CGG | - | chr8.2:45792377-45792396 | MS.gene071298:intron | 40.0% | |
| ACAATCAAATCTGCCCACAT+AGG | + | chr8.2:45790155-45790174 | None:intergenic | 40.0% | |
| ACAGCAATGCTATAGTGTAG+TGG | + | chr8.2:45792527-45792546 | None:intergenic | 40.0% | |
| ACAGCTGAAGGAAAAGGAAA+AGG | - | chr8.2:45791268-45791287 | MS.gene071298:intron | 40.0% | |
| ACATCTTCCATTACAGCTGA+AGG | - | chr8.2:45791256-45791275 | MS.gene071298:intron | 40.0% | |
| ACGTTCCTTGGAAAGTTTAC+AGG | + | chr8.2:45792122-45792141 | None:intergenic | 40.0% | |
| ACTCTTGTATATAGGGTGAG+TGG | - | chr8.2:45792945-45792964 | MS.gene071298:CDS | 40.0% | |
| ATGAGTTAGCAAATCTGGTC+CGG | - | chr8.2:45791411-45791430 | MS.gene071298:CDS | 40.0% | |
| ATGTGCTTATCGAGAATGCT+GGG | - | chr8.2:45791629-45791648 | MS.gene071298:CDS | 40.0% | |
| ATTCCAGAAGGGATTCTTAC+GGG | + | chr8.2:45790333-45790352 | None:intergenic | 40.0% | |
| ATTCTCTTTCCCCTTGTCAA+AGG | + | chr8.2:45791752-45791771 | None:intergenic | 40.0% | |
| CAACATAAGGATGACAAAGC+AGG | - | chr8.2:45791868-45791887 | MS.gene071298:CDS | 40.0% | |
| CAGCTAGAAGGATTTACTTG+CGG | - | chr8.2:45792788-45792807 | MS.gene071298:intron | 40.0% | |
| CTCTTGTATATAGGGTGAGT+GGG | - | chr8.2:45792946-45792965 | MS.gene071298:CDS | 40.0% | |
| CTTGATTTCGAGACTGAAGA+AGG | + | chr8.2:45790515-45790534 | None:intergenic | 40.0% | |
| GAAGGATTTACTTGCGGTAA+TGG | - | chr8.2:45792794-45792813 | MS.gene071298:intron | 40.0% | |
| GGACCAGCATAAATATATGG+AGG | - | chr8.2:45790973-45790992 | MS.gene071298:intron | 40.0% | |
| GTAAAACCCTGAACCGAAAA+TGG | + | chr8.2:45790370-45790389 | None:intergenic | 40.0% | |
| GTTTGTTTCAAAGCAGCAGA+GGG | - | chr8.2:45791186-45791205 | MS.gene071298:intron | 40.0% | |
| TAAAAAGGAGGCCTTTGACA+AGG | - | chr8.2:45791738-45791757 | MS.gene071298:CDS | 40.0% | |
| TAAACAGCAGGGTTTAAGCA+AGG | - | chr8.2:45790595-45790614 | MS.gene071298:intron | 40.0% | |
| TATGTGCTTATCGAGAATGC+TGG | - | chr8.2:45791628-45791647 | MS.gene071298:CDS | 40.0% | |
| TCAAAAGTGGAGATGGATGT+TGG | - | chr8.2:45791082-45791101 | MS.gene071298:intron | 40.0% | |
| TCAATGAGTCGTGTGATATC+AGG | + | chr8.2:45792901-45792920 | None:intergenic | 40.0% | |
| TCCATTACAGCTGAAGGAAA+AGG | - | chr8.2:45791262-45791281 | MS.gene071298:intron | 40.0% | |
| TCTTCAGTCTCGAAATCAAG+AGG | - | chr8.2:45790515-45790534 | MS.gene071298:intron | 40.0% | |
| TGAAAGGTCTACAAGAAGCA+TGG | - | chr8.2:45790811-45790830 | MS.gene071298:CDS | 40.0% | |
| ! | AAAATTTGCTCACTCTGGTG+AGG | - | chr8.2:45790466-45790485 | MS.gene071298:intron | 40.0% |
| ! | AAGGCTAGTTGCAATCTTGT+TGG | - | chr8.2:45790758-45790777 | MS.gene071298:CDS | 40.0% |
| ! | AGCTGTAATGGAAGATGTCT+TGG | + | chr8.2:45791254-45791273 | None:intergenic | 40.0% |
| ! | AGTTTGTTTCAAAGCAGCAG+AGG | - | chr8.2:45791185-45791204 | MS.gene071298:intron | 40.0% |
| ! | ATCAGCAGCTTTGACAATAC+TGG | - | chr8.2:45791891-45791910 | MS.gene071298:CDS | 40.0% |
| ! | GGATTATAAGGGGCATAAGA+AGG | - | chr8.2:45790862-45790881 | MS.gene071298:CDS | 40.0% |
| ! | GGTTTTCCATTTTCGGTTCA+GGG | - | chr8.2:45790361-45790380 | MS.gene071298:intron | 40.0% |
| ! | TCCTTTTCCTTCAGCTGTAA+TGG | + | chr8.2:45791266-45791285 | None:intergenic | 40.0% |
| ! | TGCTGGGTTTACATTTTCAC+AGG | - | chr8.2:45791645-45791664 | MS.gene071298:CDS | 40.0% |
| !! | ATGAAGAAGGTGTTCTTGCA+AGG | - | chr8.2:45791806-45791825 | MS.gene071298:CDS | 40.0% |
| !! | TGAAGAAGGTGTTCTTGCAA+GGG | - | chr8.2:45791807-45791826 | MS.gene071298:CDS | 40.0% |
| AAAAGGAGGCCTTTGACAAG+GGG | - | chr8.2:45791740-45791759 | MS.gene071298:CDS | 45.0% | |
| AAACTGGGCAACTTCTTTCC+TGG | + | chr8.2:45792858-45792877 | None:intergenic | 45.0% | |
| AACAGCAGGGTTTAAGCAAG+GGG | - | chr8.2:45790597-45790616 | MS.gene071298:intron | 45.0% | |
| AACCAGGTAATCCAGCTAGA+AGG | - | chr8.2:45792776-45792795 | MS.gene071298:intron | 45.0% | |
| ACGGCATCTTCATCGATCAT+TGG | - | chr8.2:45789656-45789675 | MS.gene071298:intron | 45.0% | |
| AGTAGAAGCCTCAAGAGTTC+AGG | - | chr8.2:45790952-45790971 | MS.gene071298:intron | 45.0% | |
| CAATCCGTGATTGACAACAC+AGG | + | chr8.2:45792384-45792403 | None:intergenic | 45.0% | |
| CAATGTGAGGCAAAGAAACC+AGG | - | chr8.2:45792760-45792779 | MS.gene071298:intron | 45.0% | |
| CAGTGAGTAGTACCAGTCTT+AGG | - | chr8.2:45791035-45791054 | MS.gene071298:intron | 45.0% | |
| CGCAAGTAAATCCTTCTAGC+TGG | + | chr8.2:45792790-45792809 | None:intergenic | 45.0% | |
| CGGCATCTTCATCGATCATT+GGG | - | chr8.2:45789657-45789676 | MS.gene071298:intron | 45.0% | |
| CTCTACCATCGGTAAAAAGG+AGG | - | chr8.2:45791726-45791745 | MS.gene071298:CDS | 45.0% | |
| GATAAGAACAGGTGCAATCC+TGG | - | chr8.2:45791220-45791239 | MS.gene071298:intron | 45.0% | |
| GCTCTTTGGCAAATCTTCCA+AGG | - | chr8.2:45792691-45792710 | MS.gene071298:intron | 45.0% | |
| TGGTCCGGCTCTTATAAAAC+AGG | - | chr8.2:45791426-45791445 | MS.gene071298:CDS | 45.0% | |
| ! | AAAGGCCTCCTTTTTACCGA+TGG | + | chr8.2:45791734-45791753 | None:intergenic | 45.0% |
| ! | ATCCTTCTAGCTGGATTACC+TGG | + | chr8.2:45792781-45792800 | None:intergenic | 45.0% |
| ! | CATCGATCATTGGGCTTTTC+TGG | - | chr8.2:45789666-45789685 | MS.gene071298:intron | 45.0% |
| ! | CGGTTCAGGGTTTTACTGAA+TGG | - | chr8.2:45790374-45790393 | MS.gene071298:intron | 45.0% |
| ! | CTTCTGGGAAGTCTAGTGTT+GGG | - | chr8.2:45791134-45791153 | MS.gene071298:intron | 45.0% |
| ! | GGGTTTTCCATTTTCGGTTC+AGG | - | chr8.2:45790360-45790379 | MS.gene071298:intron | 45.0% |
| ! | GTTGCAGAACTGATGATGAC+TGG | - | chr8.2:45790293-45790312 | MS.gene071298:intron | 45.0% |
| ! | TCTTCTGGGAAGTCTAGTGT+TGG | - | chr8.2:45791133-45791152 | MS.gene071298:intron | 45.0% |
| !! | GAAGAAGGTGTTCTTGCAAG+GGG | - | chr8.2:45791808-45791827 | MS.gene071298:CDS | 45.0% |
| !! | TTAAATTATAATTTAACAAA+AGG | + | chr8.2:45792086-45792105 | None:intergenic | 5.0% |
| !! | TTGTTAAATTATAATTTAAA+AGG | - | chr8.2:45792087-45792106 | MS.gene071298:CDS | 5.0% |
| AGGGGAAAGAGAATGCTACC+AGG | - | chr8.2:45791758-45791777 | MS.gene071298:CDS | 50.0% | |
| AGGGGTCGTAAATCGTCTTC+TGG | - | chr8.2:45791118-45791137 | MS.gene071298:intron | 50.0% | |
| ATGCTGGTCCTGAACTCTTG+AGG | + | chr8.2:45790963-45790982 | None:intergenic | 50.0% | |
| ATTTGCTCACTCTGGTGAGG+AGG | - | chr8.2:45790469-45790488 | MS.gene071298:intron | 50.0% | |
| CAGGGGAAAAGCTATGTCGA+AGG | - | chr8.2:45790739-45790758 | MS.gene071298:CDS | 50.0% | |
| GGGGTCGTAAATCGTCTTCT+GGG | - | chr8.2:45791119-45791138 | MS.gene071298:intron | 50.0% | |
| ! | CTTCGACATAGCTTTTCCCC+TGG | + | chr8.2:45790741-45790760 | None:intergenic | 50.0% |
| ! | GAGACTGAAGAAGGAAGTGC+CGG | + | chr8.2:45790506-45790525 | None:intergenic | 50.0% |
| !! | AAGGGGAGGTGCTTGAAACA+AGG | - | chr8.2:45790614-45790633 | MS.gene071298:intron | 50.0% |
| ACTCGCGAGCAGACAACTGA+TGG | + | chr8.2:45790439-45790458 | None:intergenic | 55.0% | |
| AGCAGGGTTTAAGCAAGGGG+AGG | - | chr8.2:45790600-45790619 | MS.gene071298:intron | 55.0% | |
| CCACCCGTAAGAATCCCTTC+TGG | - | chr8.2:45790327-45790346 | MS.gene071298:intron | 55.0% | |
| CCAGAAGGGATTCTTACGGG+TGG | + | chr8.2:45790330-45790349 | None:intergenic | 55.0% | |
| TCACTCTGGTGAGGAGGCAG+TGG | - | chr8.2:45790475-45790494 | MS.gene071298:intron | 60.0% | |
| TGAGGAGGCAGTGGCGTCGC+CGG | - | chr8.2:45790484-45790503 | MS.gene071298:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 45789637 | 45792971 | 45789637 | ID=MS.gene071298 |
| chr8.2 | mRNA | 45789637 | 45792971 | 45789637 | ID=MS.gene071298.t1;Parent=MS.gene071298 |
| chr8.2 | exon | 45792921 | 45792971 | 45792921 | ID=MS.gene071298.t1.exon1;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45792921 | 45792971 | 45792921 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| chr8.2 | exon | 45792407 | 45792471 | 45792407 | ID=MS.gene071298.t1.exon2;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45792407 | 45792471 | 45792407 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| chr8.2 | exon | 45792276 | 45792308 | 45792276 | ID=MS.gene071298.t1.exon3;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45792276 | 45792308 | 45792276 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| chr8.2 | exon | 45791275 | 45792175 | 45791275 | ID=MS.gene071298.t1.exon4;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45791275 | 45792175 | 45791275 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| chr8.2 | exon | 45790696 | 45790941 | 45790696 | ID=MS.gene071298.t1.exon5;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45790696 | 45790941 | 45790696 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| chr8.2 | exon | 45789799 | 45789863 | 45789799 | ID=MS.gene071298.t1.exon6;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45789799 | 45789863 | 45789799 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| chr8.2 | exon | 45789637 | 45789649 | 45789637 | ID=MS.gene071298.t1.exon7;Parent=MS.gene071298.t1 |
| chr8.2 | CDS | 45789637 | 45789649 | 45789637 | ID=cds.MS.gene071298.t1;Parent=MS.gene071298.t1 |
| Gene Sequence |
| Protein sequence |
