AlfalfaGEDB | MS.gene071330

M. sativa cultivar XinJiangDaYe / MS.gene071330

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071330.t1	GAU44816.1	39.6	230	22	3	23	139	477	702	3.00E-26	128.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071330.t1	A0A2Z6NMD3	39.6	230	22	3	23	139	477	702	2.2e-26	128.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene071330	0.800044	1.73E-48	-1.69E-46
MS.gene049853	MS.gene071330	0.832835	7.54E-56	-1.69E-46
MS.gene05404	MS.gene071330	0.808031	3.78E-50	-1.69E-46
MS.gene054484	MS.gene071330	0.831838	1.33E-55	-1.69E-46
MS.gene055017	MS.gene071330	0.810639	1.04E-50	-1.69E-46
MS.gene055056	MS.gene071330	0.822038	2.93E-53	-1.69E-46
MS.gene055058	MS.gene071330	0.815918	7.23E-52	-1.69E-46
MS.gene058515	MS.gene071330	0.833074	6.57E-56	-1.69E-46
MS.gene05925	MS.gene071330	0.802488	5.48E-49	-1.69E-46
MS.gene059276	MS.gene071330	0.838975	2.09E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071330.t1	MTR_0152s0010	59.375	64	25	1	14	76	10	73	8.11e-20	79.3
MS.gene071330.t1	MTR_0152s0060	57.812	64	26	1	14	76	45	108	3.07e-18	80.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCGAAGGTGGTGGAGAA+AGG	0.417691	7.3:+34329106	MS.gene071330:CDS
AAGGTGGTGGAGAAAGGAGA+AGG	0.492351	7.3:+34329112	MS.gene071330:CDS
ACCTATCATCACATTGCTTG+AGG	0.523184	7.3:+34329713	MS.gene071330:CDS
AGCATTCAACAAAACCATAT+TGG	0.419572	7.3:+34329677	MS.gene071330:CDS
AGGTGGTGGAGAAAGGAGAA+GGG	0.490083	7.3:+34329113	MS.gene071330:CDS
ATCCATCTAGTAAATGGACA+AGG	0.650961	7.3:+34329601	MS.gene071330:intron
ATCTATGAAGGCGAAGGTGG+TGG	0.496255	7.3:+34329099	MS.gene071330:CDS
CACAATATGAGGACTTGCAA+GGG	0.581035	7.3:+34330358	MS.gene071330:CDS
CACACATATTGTTGACTTGA+AGG	0.331521	7.3:-34329653	None:intergenic
CCCTCAAGCAATGTGATGAT+AGG	0.452056	7.3:-34329714	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGTGAATGCAAAAATTG+TGG	+	chr7.3:34330325-34330344	MS.gene071330:CDS	30.0%
AGAATCCTAAAATACTTCCA+AGG	+	chr7.3:34330294-34330313	MS.gene071330:intron	30.0%
AGCATTCAACAAAACCATAT+TGG	+	chr7.3:34329677-34329696	MS.gene071330:CDS	30.0%
GAATCCTAAAATACTTCCAA+GGG	+	chr7.3:34330295-34330314	MS.gene071330:intron	30.0%
TCACGTAATGAAAAGACATT+AGG	-	chr7.3:34329188-34329207	None:intergenic	30.0%
TGAAACATCCATCTAGTAAA+TGG	+	chr7.3:34329595-34329614	MS.gene071330:intron	30.0%
TGCAAAAATTGTGGAAAGTT+TGG	+	chr7.3:34330334-34330353	MS.gene071330:CDS	30.0%
TTTGTCACGAATATCCAATA+TGG	-	chr7.3:34329694-34329713	None:intergenic	30.0%
AATAGTGTATCACGGAGTAA+TGG	+	chr7.3:34329324-34329343	MS.gene071330:intron	35.0%
ATCCATCTAGTAAATGGACA+AGG	+	chr7.3:34329601-34329620	MS.gene071330:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	34329091	34330614	34329091	ID=MS.gene071330
chr7.3	mRNA	34329091	34330614	34329091	ID=MS.gene071330.t1;Parent=MS.gene071330
chr7.3	exon	34329091	34329161	34329091	ID=MS.gene071330.t1.exon1;Parent=MS.gene071330.t1
chr7.3	CDS	34329091	34329161	34329091	ID=cds.MS.gene071330.t1;Parent=MS.gene071330.t1
chr7.3	exon	34329611	34329782	34329611	ID=MS.gene071330.t1.exon2;Parent=MS.gene071330.t1
chr7.3	CDS	34329611	34329782	34329611	ID=cds.MS.gene071330.t1;Parent=MS.gene071330.t1
chr7.3	exon	34330316	34330423	34330316	ID=MS.gene071330.t1.exon3;Parent=MS.gene071330.t1
chr7.3	CDS	34330316	34330423	34330316	ID=cds.MS.gene071330.t1;Parent=MS.gene071330.t1
chr7.3	exon	34330519	34330614	34330519	ID=MS.gene071330.t1.exon4;Parent=MS.gene071330.t1
chr7.3	CDS	34330519	34330614	34330519	ID=cds.MS.gene071330.t1;Parent=MS.gene071330.t1

Gene Sequence

>MS.gene071330

ATGAATTCATCTATGAAGGCGAAGGTGGTGGAGAAAGGAGAAGGGGGTCGAGATGCATCTCTGTATTCAAGGTATGTGTATATTTTCTCTTTTGCCTAATGTCTTTTCATTACGTGATTTTTAACAAAAGCCAAAGACTACCTAGGTTAATCGCTGATCATGAATATTAGTGGTTTGTTCAAACTGTGGCATGCTACAGTGCTGCAACTGATATTTGACAATACTCTGTAATAAATAGTGTATCACGGAGTAATGGTGATTCATTCAGACTCCGATACGCTGTAGCACCATAACATTATAGTCTCATTTGGCAACACTACTTGAAATACAAAATGCTCTAGTATTGCTGAAGTTAAGGTGTATATTTTGTTACTAATTTACAGTAGCTAGCTATTGTGATGTTTATTTGCAAATTTTGTTACTAATTTTGTATCTCTAGTTGATGGTTTGCTTGTTTCTATTTCTGATTTTGATATGTTGATAAGTCTATTTGGACTGATATGATGAAACATCCATCTAGTAAATGGACAAGGAGTGCATACAGAACTAACACACAATGTGACCTTCAAGTCAACAATATGTGTGAAGCATTCAACAAAACCATATTGGATATTCGTGACAAACCTATCATCACATTGCTTGAGGGATTGAAAAATTATATTTCAAAAAGGATTGTCACTCAAAGTGAACTGGTGCGAAGGTATACGGGAAACATATGTCCAAAGATCCAACTATTGCTCGAAAAGGCCAAGAGGGTCGCAGATGGGTGGTCTCCACATTGGGCTGGTGATCTAGAGCATCATGGCCTTTTTCATGTAGAGAATGGGAATGATCAATATGCTGTCGATTTACACAAAAGGACTTGCGCTTGCAGAAAATGGGATTTGACTGGTATACCGTGTTGCCATAGCATTGCCTGCATGTGGCATAACCATGAAGTTCCAGAGGATTCTGTTGCTTCATATTACAGGTATATTTTTAACTCAGCTTTTAAATTCGTATTTTACTTGTAAAGTTCTTAATTTAATTTCATCAATTCATATAGGAAAACAACATTTATAGCAACATATTCTCACATCATCATGCCTTCAAATGGTCCAAAGCTTTGGCCTATTATAGATAGTGAGTCAATAAATCCACCAAGTATGAGAAGAGCGTCAGGAAGACCCAAAAAACAAAGAAACAAGAGTAACGATGAGCCCAAGAATCCTAAAATACTTCCAAGGGACCTTCCAACTGTGAATGCAAAAATTGTGGAAAGTTTGGTCACAATATGAGGACTTGCAAGGGTAAAACAGCGGCAGATAGAGCGATGCCTAAAGGTGGAAATAAGGTAACTGATACATATTCTAACTGTACGGTTTATGTTGTTGATCAAAACATATAATTGTTCGTTGTAACTATATAGCTTATTATCTATTTATGCAGAAGCAGAATTCAAAAAATAAGTCACAAAAGAAGTCACAGGATGGTGAGAGTTCACAAGCACCTCAACCTCGAGGATCACAAGCATCAAGTCGTTAG

Protein sequence

>MS.gene071330.t1

MNSSMKAKVVEKGEGGRDASLYSSKWTRSAYRTNTQCDLQVNNMCEAFNKTILDIRDKPIITLLEGLKNYISKRIVTQSELGPSNCECKNCGKFGHNMRTCKGKTAADRAMPKGGNKKQNSKNKSQKKSQDGESSQAPQPRGSQASSR