AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05404

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05404.t1 MTR_1g096890 76.667 60 14 0 11 70 1 60 3.02e-18 80.9
MS.gene05404.t1 MTR_1g096890 75.000 60 15 0 2 61 1 60 8.06e-18 79.7
MS.gene05404.t1 MTR_1g096890 75.000 60 15 0 20 79 1 60 1.63e-17 79.0
MS.gene05404.t1 MTR_1g096890 80.769 52 10 0 1 52 9 60 7.26e-17 77.0
MS.gene05404.t1 MTR_1g096890 72.881 59 16 0 29 87 1 59 1.96e-16 75.9
MS.gene05404.t1 MTR_1g096890 71.698 53 15 0 38 90 1 53 9.18e-12 62.8
MS.gene05404.t1 MTR_1g090970 61.111 54 21 0 46 99 1 54 7.76e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 79 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGCCGAAAAGTGTTATT+TGG 0.260291 6.1:-73029370 None:intergenic
AAGGGACTGAGCAGTTGAAC+AGG 0.353378 6.1:-73029027 None:intergenic
AATACGCAAGTCTGAGGAAC+CGG 0.402395 6.1:-73029443 None:intergenic
TGTTCAGCTGCTCAGTCCCT+TGG 0.403451 6.1:+73029302 MS.gene05404:intron
AGCTGAGCTGGACATGCTTA+AGG 0.404454 6.1:+73027093 MS.gene05404:CDS
GCTGAAGGGACGAGCTGAGC+TGG 0.405018 6.1:+73027081 MS.gene05404:CDS
TGTTCAACTGCTCAGTCCCT+TGG 0.409328 6.1:+73029029 MS.gene05404:CDS
TTACGCGCTATGTAAATCTA+AGG 0.417616 6.1:-73028020 None:intergenic
TCAGCTCAATGTATTTATCA+AGG 0.440323 6.1:+73029665 MS.gene05404:intron
GCTGAAGGGACGAGCTGAGC+TGG 0.449184 6.1:+73026919 MS.gene05404:CDS
GCTGAAGGGACGAGCTGAGC+TGG 0.449184 6.1:+73027027 MS.gene05404:CDS
GCTGAGCTGGACATGCTTAA+GGG 0.450959 6.1:+73027094 MS.gene05404:CDS
TTCTCATCAGCTCGACAACT+TGG 0.464405 6.1:+73027908 MS.gene05404:CDS
GCTGAAGGGACGAGCTGAGC+TGG 0.474908 6.1:+73026946 MS.gene05404:CDS
AACATCCTTGTTTGAAACTC+AGG 0.475738 6.1:-73029070 None:intergenic
CTCGGCACTTCTCATCTACT+TGG 0.477371 6.1:+73028996 MS.gene05404:CDS
AGAGAGAGTGGAAGCATCAA+GGG 0.481032 6.1:-73027975 None:intergenic
AGGGACGAGCTGAGCTAAGC+AGG 0.490544 6.1:+73026978 MS.gene05404:CDS
TGGTGAAGCTACAATGTTGT+CGG 0.494961 6.1:-73029350 None:intergenic
GAGAGAGAGTGGAAGCATCA+AGG 0.496014 6.1:-73027976 None:intergenic
GCTTAAGGGTATAGCTGAGT+TGG 0.497696 6.1:+73027108 MS.gene05404:CDS
CTATTATGCGCAGATCTGCT+TGG 0.501101 6.1:+73029402 MS.gene05404:CDS
AGCTGAGCTGGTCATGCTGA+AGG 0.502776 6.1:+73026931 MS.gene05404:CDS
AGCTGAGCTGGTCATGCTGA+AGG 0.502776 6.1:+73026958 MS.gene05404:CDS
GTCTGAGGAACCGGGAAAAG+AGG 0.506030 6.1:-73029434 None:intergenic
AGAGAGAAGGTATGAGCCAA+GGG 0.507039 6.1:-73029318 None:intergenic
AGAGAGAAGGTAGGAGCCAA+GGG 0.516669 6.1:-73029045 None:intergenic
AAGAGAGAAGGTAGGAGCCA+AGG 0.517972 6.1:-73029046 None:intergenic
AGGAGTCAAGGGGAGAGAGA+GGG 0.520873 6.1:-73028000 None:intergenic
GAGTCAAGGGGAGAGAGAGG+GGG 0.523415 6.1:-73027998 None:intergenic
AGCTGAGCTGAGCATGCTGA+AGG 0.523444 6.1:+73026904 MS.gene05404:CDS
GGAGTCAAGGGGAGAGAGAG+GGG 0.526120 6.1:-73027999 None:intergenic
AGCTGAGCTGAGCATGCTGA+AGG 0.531424 6.1:+73027012 MS.gene05404:CDS
AAGGAGTCAAGGGGAGAGAG+AGG 0.536777 6.1:-73028001 None:intergenic
AGCTGAGCTAAGCAGGCTGA+AGG 0.541056 6.1:+73026985 MS.gene05404:CDS
AGCTGAGTTGGACATGTTGA+AGG 0.541671 6.1:+73027120 MS.gene05404:CDS
AAGAGAGAAGGTATGAGCCA+AGG 0.545143 6.1:-73029319 None:intergenic
ATGTAAATCTAAGGAGTCAA+GGG 0.548393 6.1:-73028011 None:intergenic
AGCTGAGCTGAGCATGCTGA+AGG 0.557431 6.1:+73027066 MS.gene05404:CDS
CACTCCCTCGTAAAATGCGA+AGG 0.562856 6.1:-73029722 None:intergenic
GCTTGGCCTTTAGATCTGCT+CGG 0.565067 6.1:+73028946 MS.gene05404:intron
AGCTGAGCTGGTCATGCTGA+AGG 0.569253 6.1:+73027039 MS.gene05404:CDS
TATGTAAATCTAAGGAGTCA+AGG 0.572286 6.1:-73028012 None:intergenic
AGTTGAGCTAGGCATGCTGA+AGG 0.582446 6.1:+73026877 None:intergenic
TGAAACTCAGGTAAGAGAGA+AGG 0.585507 6.1:-73029058 None:intergenic
ACCGGGAAAAGAGGAAATGT+TGG 0.585677 6.1:-73029425 None:intergenic
TCGAGAAGTTGAATGAAGAG+AGG 0.588940 6.1:-73027951 None:intergenic
CTGAGCAGTTGAACAGGGAG+AGG 0.589391 6.1:-73029021 None:intergenic
GCTGAGCTGGTCATGCTGAA+GGG 0.594928 6.1:+73026932 MS.gene05404:CDS
GCTGAGCTGGTCATGCTGAA+GGG 0.594928 6.1:+73026959 MS.gene05404:CDS
ATACGCAAGTCTGAGGAACC+GGG 0.596817 6.1:-73029442 None:intergenic
GCTGAGCTGAGCATGCTGAA+GGG 0.599725 6.1:+73027013 MS.gene05404:CDS
GCTGAGCTGAGCATGCTGAA+GGG 0.599725 6.1:+73027067 MS.gene05404:CDS
TTCCTCTATGTTTAGCACAT+CGG 0.601824 6.1:+73027762 MS.gene05404:CDS
TTCTTGATAGCTCAACAGCT+CGG 0.607655 6.1:+73028978 MS.gene05404:CDS
TCGGCGAGCAAGAAGAGAGA+AGG 0.611035 6.1:-73029331 None:intergenic
GCTGAGCTAAGCAGGCTGAA+GGG 0.615679 6.1:+73026986 MS.gene05404:CDS
GTGCTGAGGTGTTGAACTGA+GGG 0.616511 6.1:-73027877 None:intergenic
TGCCGATGTGCTAAACATAG+AGG 0.617819 6.1:-73027764 None:intergenic
GCTGAGCTGAGCATGCTGAA+GGG 0.620496 6.1:+73026905 MS.gene05404:CDS
ACTCCCTCGTAAAATGCGAA+GGG 0.620827 6.1:-73029721 None:intergenic
GTTGAGCTAGGCATGCTGAA+GGG 0.621590 6.1:+73026878 None:intergenic
TGAGCTATCAAGAAGATATG+TGG 0.621652 6.1:-73028969 None:intergenic
TTAAAGACTAAGCTGCATAG+AGG 0.629331 6.1:-73029757 None:intergenic
TTTGTAAATACGCAAGTCTG+AGG 0.633335 6.1:-73029449 None:intergenic
GCATAATAGAGAATAAATGA+AGG 0.636894 6.1:-73029388 None:intergenic
TGTAAATCTAAGGAGTCAAG+GGG 0.653829 6.1:-73028010 None:intergenic
TCCCTCGTAAAATGCGAAGG+GGG 0.657362 6.1:-73029719 None:intergenic
GCTGAGTTGGACATGTTGAA+GGG 0.659402 6.1:+73027121 MS.gene05404:CDS
CTCCCTCGTAAAATGCGAAG+GGG 0.661178 6.1:-73029720 None:intergenic
ACTCAGGTAAGAGAGAAGGT+AGG 0.663890 6.1:-73029054 None:intergenic
AGGGACTGAGCAGTTGAACA+GGG 0.668071 6.1:-73029026 None:intergenic
CGAGCTGATGAGAAGTGCAT+AGG 0.673757 6.1:-73027899 None:intergenic
GAGTTGGACATGTTGAAGGG+TGG 0.686932 6.1:+73027124 MS.gene05404:CDS
GGTGCTGAGGTGTTGAACTG+AGG 0.697695 6.1:-73027878 None:intergenic
TGAGAAGTGCATAGGTGCTG+AGG 0.703249 6.1:-73027891 None:intergenic
TCTTACCTGAGTTTCAAACA+AGG 0.704416 6.1:+73029065 MS.gene05404:CDS
TCAGTGTCTACGAGAGAGTG+TGG 0.722405 6.1:+73029092 MS.gene05404:CDS
TGCTGAGGTGTTGAACTGAG+GGG 0.751241 6.1:-73027876 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACCTTGATAAATTTTTAA+TGG + chr6.1:73027566-73027585 MS.gene05404:intron 15.0%
!! AAAAATAAGTTATGAAGAAG+AGG - chr6.1:73029162-73029181 None:intergenic 20.0%
!! ATGCATTATGTAAAAATCTA+AGG - chr6.1:73028751-73028770 None:intergenic 20.0%
!! ATTTGTCACATGATTTATTT+AGG - chr6.1:73027658-73027677 None:intergenic 20.0%
!!! GATTTTTACATAATGCATAA+CGG + chr6.1:73028753-73028772 MS.gene05404:intron 20.0%
!!! TATAAGCAAAATTCATGTTT+TGG - chr6.1:73027592-73027611 None:intergenic 20.0%
! AAGAGAAATGTGTTATGATT+GGG + chr6.1:73029125-73029144 MS.gene05404:intron 25.0%
! AATGTATAGTAAAGTTCATG+TGG + chr6.1:73027196-73027215 MS.gene05404:intron 25.0%
! AGCATTTCAAACTATTCATA+AGG - chr6.1:73028071-73028090 None:intergenic 25.0%
! GCATAATAGAGAATAAATGA+AGG - chr6.1:73029391-73029410 None:intergenic 25.0%
! GCATTTCAAACTATTCATAA+GGG - chr6.1:73028070-73028089 None:intergenic 25.0%
! TGGCCATTAAAAATTTATCA+AGG - chr6.1:73027572-73027591 None:intergenic 25.0%
! TGTACAATATTGATAGAAGT+GGG - chr6.1:73029206-73029225 None:intergenic 25.0%
! TTGTACAATATTGATAGAAG+TGG - chr6.1:73029207-73029226 None:intergenic 25.0%
! TTTAAAGACCCTACTTTATA+TGG - chr6.1:73027454-73027473 None:intergenic 25.0%
AACTCAATATAGTAGAGATG+TGG - chr6.1:73027703-73027722 None:intergenic 30.0%
AGACTAAGAAGATGAACAAA+TGG - chr6.1:73029562-73029581 None:intergenic 30.0%
ATAAATACATTGAGCTGAAG+AGG - chr6.1:73029663-73029682 None:intergenic 30.0%
ATAGTAAAGTTCATGTGGTA+TGG + chr6.1:73027201-73027220 MS.gene05404:intron 30.0%
ATGTAAATCTAAGGAGTCAA+GGG - chr6.1:73028014-73028033 None:intergenic 30.0%
ATTCCAGTCCATATAAAGTA+GGG + chr6.1:73027443-73027462 MS.gene05404:intron 30.0%
GAAGAGAAATGTGTTATGAT+TGG + chr6.1:73029124-73029143 MS.gene05404:intron 30.0%
GAGTGATTAAGCAAAATTAG+TGG - chr6.1:73028889-73028908 None:intergenic 30.0%
GTAAAAATCTAAGGAGTCAA+GGG - chr6.1:73028742-73028761 None:intergenic 30.0%
GTTCATAAAAATTCTCTCCT+TGG + chr6.1:73029585-73029604 MS.gene05404:intron 30.0%
TAAAAATCTAAGGAGTCAAG+GGG - chr6.1:73028741-73028760 None:intergenic 30.0%
TAACACATTTCTCTTCTACT+CGG - chr6.1:73029120-73029139 None:intergenic 30.0%
TATGTAAATCTAAGGAGTCA+AGG - chr6.1:73028015-73028034 None:intergenic 30.0%
TATTCCAGTCCATATAAAGT+AGG + chr6.1:73027442-73027461 MS.gene05404:intron 30.0%
TCAGCTCAATGTATTTATCA+AGG + chr6.1:73029665-73029684 MS.gene05404:intron 30.0%
TGTAAAAATCTAAGGAGTCA+AGG - chr6.1:73028743-73028762 None:intergenic 30.0%
! CTTCACCAAATAACACTTTT+CGG + chr6.1:73029365-73029384 MS.gene05404:CDS 30.0%
!! TACTTTATATGGACTGGAAT+AGG - chr6.1:73027443-73027462 None:intergenic 30.0%
!!! TTTTTGACTTCTATGTAGCT+CGG + chr6.1:73029688-73029707 MS.gene05404:CDS 30.0%
AAGAAGATGAACAAATGGCT+AGG - chr6.1:73029557-73029576 None:intergenic 35.0%
AAGTTATGAAGAAGAGGTAG+AGG - chr6.1:73029156-73029175 None:intergenic 35.0%
CATCTTCTAGTGTATACGTA+GGG - chr6.1:73029489-73029508 None:intergenic 35.0%
GTTGAGATGGATATGTTGAA+TGG + chr6.1:73027171-73027190 MS.gene05404:intron 35.0%
TAAGTGTGTATGAGCAAAGT+AGG - chr6.1:73027628-73027647 None:intergenic 35.0%
TCGAGAAGTTGAATAAAGAG+AGG - chr6.1:73028317-73028336 None:intergenic 35.0%
TCTTACCTGAGTTTCAAACA+AGG + chr6.1:73029065-73029084 MS.gene05404:CDS 35.0%
TGAGCTATCAAGAAGATATG+TGG - chr6.1:73028972-73028991 None:intergenic 35.0%
TGTAAATCTAAGGAGTCAAG+GGG - chr6.1:73028013-73028032 None:intergenic 35.0%
TTAAAGACTAAGCTGCATAG+AGG - chr6.1:73029760-73029779 None:intergenic 35.0%
TTACGCGCTATGTAAATCTA+AGG - chr6.1:73028023-73028042 None:intergenic 35.0%
TTCCTCTATGTTTAGCACAT+CGG + chr6.1:73027762-73027781 MS.gene05404:CDS 35.0%
TTTGTAAATACGCAAGTCTG+AGG - chr6.1:73029452-73029471 None:intergenic 35.0%
! AACATCCTTGTTTGAAACTC+AGG - chr6.1:73029073-73029092 None:intergenic 35.0%
! GAATAGTTTGAAATGCTGCT+CGG + chr6.1:73028074-73028093 MS.gene05404:intron 35.0%
AAGATGAACAAATGGCTAGG+TGG - chr6.1:73029554-73029573 None:intergenic 40.0%
ACACTAGAAGATGCACATTG+AGG + chr6.1:73029496-73029515 MS.gene05404:intron 40.0%
ACCAAGTGTCAAGACTATCA+AGG + chr6.1:73027318-73027337 MS.gene05404:intron 40.0%
AGACCCTACTTTATATGGAC+TGG - chr6.1:73027449-73027468 None:intergenic 40.0%
CATTGAGGTGTACATTTCTC+AGG + chr6.1:73029511-73029530 MS.gene05404:intron 40.0%
CCAAGTGTCAAGACTATCAA+GGG + chr6.1:73027319-73027338 MS.gene05404:intron 40.0%
CTTCTCTATGTTTAGCACCT+CGG + chr6.1:73028125-73028144 MS.gene05404:intron 40.0%
CTTGACACCTCTCATATACT+TGG + chr6.1:73029269-73029288 MS.gene05404:intron 40.0%
GCATCTTCTAGTGTATACGT+AGG - chr6.1:73029490-73029509 None:intergenic 40.0%
GCTTCATTTACATTGCTGCT+TGG + chr6.1:73028929-73028948 MS.gene05404:intron 40.0%
GTAGACGTTTGTTCTTCACA+AGG + chr6.1:73027413-73027432 MS.gene05404:intron 40.0%
TCGAGAAGTTGAATGAAGAG+AGG - chr6.1:73027954-73027973 None:intergenic 40.0%
TGAAACTCAGGTAAGAGAGA+AGG - chr6.1:73029061-73029080 None:intergenic 40.0%
TGGTGAAGCTACAATGTTGT+CGG - chr6.1:73029353-73029372 None:intergenic 40.0%
TTCTATCTTCATTGCCAGCT+TGG + chr6.1:73027480-73027499 MS.gene05404:intron 40.0%
! TTCTTGATAGCTCAACAGCT+CGG + chr6.1:73028978-73028997 MS.gene05404:CDS 40.0%
! TTGATAGTCTTGACACTTGG+TGG - chr6.1:73027319-73027338 None:intergenic 40.0%
! TTTTCAGCTGCTCAACAACT+CGG + chr6.1:73028100-73028119 MS.gene05404:intron 40.0%
!! GAAGGCCGAAAAGTGTTATT+TGG - chr6.1:73029373-73029392 None:intergenic 40.0%
!! GGTTTTAGCCTATGCTATCA+TGG - chr6.1:73027551-73027570 None:intergenic 40.0%
AATACGCAAGTCTGAGGAAC+CGG - chr6.1:73029446-73029465 None:intergenic 45.0%
ACAAACGTCTACTCCTTGAC+AGG - chr6.1:73027405-73027424 None:intergenic 45.0%
ACCGGGAAAAGAGGAAATGT+TGG - chr6.1:73029428-73029447 None:intergenic 45.0%
ACTCAGGTAAGAGAGAAGGT+AGG - chr6.1:73029057-73029076 None:intergenic 45.0%
ACTCCCTCGTAAAATGCGAA+GGG - chr6.1:73029724-73029743 None:intergenic 45.0%
AGCCTATGCTATCATGGAGA+AGG - chr6.1:73027545-73027564 None:intergenic 45.0%
CATGGAGAAGGAGAAAAGAG+TGG - chr6.1:73027533-73027552 None:intergenic 45.0%
CCAAAGGGTCAAGGATATAG+AGG - chr6.1:73028789-73028808 None:intergenic 45.0%
CCATCTCAACTTGAGTGTTC+AGG - chr6.1:73027161-73027180 None:intergenic 45.0%
CCTCTATATCCTTGACCCTT+TGG + chr6.1:73028786-73028805 MS.gene05404:intron 45.0%
CTATTATGCGCAGATCTGCT+TGG + chr6.1:73029402-73029421 MS.gene05404:CDS 45.0%
CTCCTTCTCCATGATAGCAT+AGG + chr6.1:73027540-73027559 MS.gene05404:intron 45.0%
GCTGTCAAGTAGATGAGAAG+TGG - chr6.1:73028158-73028177 None:intergenic 45.0%
GGGTTCGTTGATGTCTTAAG+AGG - chr6.1:73028050-73028069 None:intergenic 45.0%
GGTCAAGGATATAGAGGTGA+GGG - chr6.1:73028783-73028802 None:intergenic 45.0%
GTCAAGGATATAGAGGTGAG+GGG - chr6.1:73028782-73028801 None:intergenic 45.0%
TAACAAGCTTGACGCTTGGT+GGG - chr6.1:73027247-73027266 None:intergenic 45.0%
TACATTGAGCTGAAGAGGAG+AGG - chr6.1:73029658-73029677 None:intergenic 45.0%
TCAAGGATATAGAGGTGAGG+GGG - chr6.1:73028781-73028800 None:intergenic 45.0%
TCTAGCCATGGTGACAGTAA+AGG - chr6.1:73027506-73027525 None:intergenic 45.0%
TGCCGATGTGCTAAACATAG+AGG - chr6.1:73027767-73027786 None:intergenic 45.0%
TTAACAAGCTTGACGCTTGG+TGG - chr6.1:73027248-73027267 None:intergenic 45.0%
TTCTCATCAGCTCGACAACT+TGG + chr6.1:73027908-73027927 MS.gene05404:CDS 45.0%
! AAGAGAGAAGGTATGAGCCA+AGG - chr6.1:73029322-73029341 None:intergenic 45.0%
! AGAGAGAAGGTATGAGCCAA+GGG - chr6.1:73029321-73029340 None:intergenic 45.0%
! AGATCTGGGTTAGGTTAGAG+CGG - chr6.1:73029616-73029635 None:intergenic 45.0%
! AGCTGAGTTGGACATGTTGA+AGG + chr6.1:73027120-73027139 MS.gene05404:CDS 45.0%
! CCCTTGATAGTCTTGACACT+TGG - chr6.1:73027322-73027341 None:intergenic 45.0%
! GCCAACATTTCCTCTTTTCC+CGG + chr6.1:73029424-73029443 MS.gene05404:CDS 45.0%
! GCTGAGTTGGACATGTTGAA+GGG + chr6.1:73027121-73027140 MS.gene05404:CDS 45.0%
! GCTTAAGGGTATAGCTGAGT+TGG + chr6.1:73027108-73027127 MS.gene05404:CDS 45.0%
!! ACCAAGCGTCAAGCTTGTTA+AGG + chr6.1:73027247-73027266 MS.gene05404:intron 45.0%
!! AGAGAGAGTGGAAGCATCAA+GGG - chr6.1:73027978-73027997 None:intergenic 45.0%
!! AGAGGTGCCAAGTATATGAG+AGG - chr6.1:73029279-73029298 None:intergenic 45.0%
!! CCTGAACACTCAAGTTGAGA+TGG + chr6.1:73027158-73027177 MS.gene05404:intron 45.0%
!! GTGCTGAGGTGTTGAACTAA+GGG - chr6.1:73028243-73028262 None:intergenic 45.0%
!! GTTTTGAGCAGATCTGGGTT+AGG - chr6.1:73029625-73029644 None:intergenic 45.0%
!! TCTTGACACTTGGTGGACTA+TGG - chr6.1:73027312-73027331 None:intergenic 45.0%
!! TGCTGAGGTGTTGAACTAAG+GGG - chr6.1:73028242-73028261 None:intergenic 45.0%
!!! AAGGAGGTTTTGAGCAGATC+TGG - chr6.1:73029631-73029650 None:intergenic 45.0%
!!! AGGAGGTTTTGAGCAGATCT+GGG - chr6.1:73029630-73029649 None:intergenic 45.0%
AAGAGAGAAGGTAGGAGCCA+AGG - chr6.1:73029049-73029068 None:intergenic 50.0%
AAGGGACTGAGCAGTTGAAC+AGG - chr6.1:73029030-73029049 None:intergenic 50.0%
ACTAAGCGTCAAGCCTGTCA+AGG + chr6.1:73027389-73027408 MS.gene05404:intron 50.0%
AGAGAGAAGGTAGGAGCCAA+GGG - chr6.1:73029048-73029067 None:intergenic 50.0%
AGCTGAGCTGGACATGCTTA+AGG + chr6.1:73027093-73027112 MS.gene05404:CDS 50.0%
AGGGACTGAGCAGTTGAACA+GGG - chr6.1:73029029-73029048 None:intergenic 50.0%
ATACGCAAGTCTGAGGAACC+GGG - chr6.1:73029445-73029464 None:intergenic 50.0%
ATGTGGCCGAGCAGATCTAA+AGG - chr6.1:73028955-73028974 None:intergenic 50.0%
CAAATGGCTAGGTGGAGTAG+AGG - chr6.1:73029546-73029565 None:intergenic 50.0%
CACTCCCTCGTAAAATGCGA+AGG - chr6.1:73029725-73029744 None:intergenic 50.0%
CTCCCTCGTAAAATGCGAAG+GGG - chr6.1:73029723-73029742 None:intergenic 50.0%
CTCGGCACTTCTCATCTACT+TGG + chr6.1:73028996-73029015 MS.gene05404:CDS 50.0%
GACCTCACACAAGGTCTACT+CGG + chr6.1:73028863-73028882 MS.gene05404:intron 50.0%
GAGTTGGACATGTTGAAGGG+TGG + chr6.1:73027124-73027143 MS.gene05404:CDS 50.0%
GCCTTAACAAGCTTGACGCT+TGG - chr6.1:73027251-73027270 None:intergenic 50.0%
GCTGAGCTGGACATGCTTAA+GGG + chr6.1:73027094-73027113 MS.gene05404:CDS 50.0%
GCTGTCAAGCAGATGAGAAG+TGG - chr6.1:73027795-73027814 None:intergenic 50.0%
GGAGAAGGAGAAAAGAGTGG+TGG - chr6.1:73027530-73027549 None:intergenic 50.0%
GGGTCAAGGATATAGAGGTG+AGG - chr6.1:73028784-73028803 None:intergenic 50.0%
TCAGTGTCTACGAGAGAGTG+TGG + chr6.1:73029092-73029111 MS.gene05404:CDS 50.0%
TCCCTCGTAAAATGCGAAGG+GGG - chr6.1:73029722-73029741 None:intergenic 50.0%
TGAGAAGTGGATAGATGCCG+AGG - chr6.1:73028145-73028164 None:intergenic 50.0%
TGGGCTGTGAACTGGTATAG+AGG - chr6.1:73027228-73027247 None:intergenic 50.0%
TGTTCAACTGCTCAGTCCCT+TGG + chr6.1:73029029-73029048 MS.gene05404:CDS 50.0%
TTGACAGGCTTGACGCTTAG+TGG - chr6.1:73027390-73027409 None:intergenic 50.0%
! AGGAGAGTACGACGTGAAGA+AGG - chr6.1:73028819-73028838 None:intergenic 50.0%
! CGAGCTGATGAGAAGTGCAT+AGG - chr6.1:73027902-73027921 None:intergenic 50.0%
! CTTGGCCTTTACTGTCACCA+TGG + chr6.1:73027498-73027517 MS.gene05404:intron 50.0%
! GAGAGTACGACGTGAAGAAG+GGG - chr6.1:73028817-73028836 None:intergenic 50.0%
! GCTTGGCCTTTAGATCTGCT+CGG + chr6.1:73028946-73028965 MS.gene05404:intron 50.0%
! GGAGAGTACGACGTGAAGAA+GGG - chr6.1:73028818-73028837 None:intergenic 50.0%
! TCCCCCTTCGCATTTTACGA+GGG + chr6.1:73029718-73029737 MS.gene05404:CDS 50.0%
! TGAGAAGTGCATAGGTGCTG+AGG - chr6.1:73027894-73027913 None:intergenic 50.0%
!! AAGAGTGGTGGATCTAGCCA+TGG - chr6.1:73027518-73027537 None:intergenic 50.0%
!! AGTGGACTGTGGACTGATAC+AGG - chr6.1:73027372-73027391 None:intergenic 50.0%
!! GAGAGAGAGTGGAAGCATCA+AGG - chr6.1:73027979-73027998 None:intergenic 50.0%
!! GGTGCTGAGGTGTTGAACTA+AGG - chr6.1:73028244-73028263 None:intergenic 50.0%
!! GTGCTGAGGTGTTGAACTGA+GGG - chr6.1:73027880-73027899 None:intergenic 50.0%
!! TGCTGAGGTGTTGAACTGAG+GGG - chr6.1:73027879-73027898 None:intergenic 50.0%
AAGGAGTCAAGGGGAGAGAG+AGG - chr6.1:73028004-73028023 None:intergenic 55.0%
AAGGGACTGAGCAGCTGAAC+AGG - chr6.1:73029303-73029322 None:intergenic 55.0%
AGCTGAGCTAAGCAGGCTGA+AGG + chr6.1:73026985-73027004 MS.gene05404:CDS 55.0%
AGCTGAGCTGAGCATGCTGA+AGG + chr6.1:73026904-73026923 MS.gene05404:CDS 55.0%
AGCTGAGCTGGTCATGCTGA+AGG + chr6.1:73026931-73026950 MS.gene05404:CDS 55.0%
AGGAGTCAAGGGGAGAGAGA+GGG - chr6.1:73028003-73028022 None:intergenic 55.0%
AGGGACTGAGCAGCTGAACA+GGG - chr6.1:73029302-73029321 None:intergenic 55.0%
CATCTCCTCGACCTCACACA+AGG + chr6.1:73028854-73028873 MS.gene05404:intron 55.0%
CTCGTAAAATGCGAAGGGGG+AGG - chr6.1:73029719-73029738 None:intergenic 55.0%
CTGAGCAGTTGAACAGGGAG+AGG - chr6.1:73029024-73029043 None:intergenic 55.0%
GAAGAAGGGGTGAGGCCAAA+GGG - chr6.1:73028804-73028823 None:intergenic 55.0%
GAAGAGGAGAGGAGTCAAGG+AGG - chr6.1:73029647-73029666 None:intergenic 55.0%
GCTGAAGAGGAGAGGAGTCA+AGG - chr6.1:73029650-73029669 None:intergenic 55.0%
GCTGAGCTAAGCAGGCTGAA+GGG + chr6.1:73026986-73027005 MS.gene05404:CDS 55.0%
GCTGAGCTGAGCATGCTGAA+GGG + chr6.1:73026905-73026924 MS.gene05404:CDS 55.0%
GCTGAGCTGGTCATGCTGAA+GGG + chr6.1:73026932-73026951 MS.gene05404:CDS 55.0%
GGTGACAGTAAAGGCCAAGC+TGG - chr6.1:73027497-73027516 None:intergenic 55.0%
GTAGACCTTGTGTGAGGTCG+AGG - chr6.1:73028862-73028881 None:intergenic 55.0%
GTCTGAGGAACCGGGAAAAG+AGG - chr6.1:73029437-73029456 None:intergenic 55.0%
TACGACGTGAAGAAGGGGTG+AGG - chr6.1:73028812-73028831 None:intergenic 55.0%
TCGAGGAGATGCGGAGATGA+GGG - chr6.1:73028845-73028864 None:intergenic 55.0%
TCGGCGAGCAAGAAGAGAGA+AGG - chr6.1:73029334-73029353 None:intergenic 55.0%
TGAAGAAGGGGTGAGGCCAA+AGG - chr6.1:73028805-73028824 None:intergenic 55.0%
TGTGTGAGGTCGAGGAGATG+CGG - chr6.1:73028854-73028873 None:intergenic 55.0%
TGTTCAGCTGCTCAGTCCCT+TGG + chr6.1:73029302-73029321 MS.gene05404:intron 55.0%
! CTCCCCCTTCGCATTTTACG+AGG + chr6.1:73029717-73029736 MS.gene05404:CDS 55.0%
! TCTGGGTTAGGTTAGAGCGG+AGG - chr6.1:73029613-73029632 None:intergenic 55.0%
!! GCTTGACGCTTAGTGGACTG+TGG - chr6.1:73027383-73027402 None:intergenic 55.0%
!! GGTGCTGAGGTGTTGAACTG+AGG - chr6.1:73027881-73027900 None:intergenic 55.0%
!! GGTGGACTATGGACTGATGC+AGG - chr6.1:73027301-73027320 None:intergenic 55.0%
AGAGAGAGGGGGAGAGAGAG+TGG - chr6.1:73027990-73028009 None:intergenic 60.0%
AGAGAGGGGGAGAGAGAGAG+TGG - chr6.1:73028716-73028735 None:intergenic 60.0%
AGATGCGGAGATGAGGGTGG+AGG - chr6.1:73028839-73028858 None:intergenic 60.0%
AGGAGATGCGGAGATGAGGG+TGG - chr6.1:73028842-73028861 None:intergenic 60.0%
AGGGACGAGCTGAGCTAAGC+AGG + chr6.1:73026978-73026997 MS.gene05404:CDS 60.0%
AGGTTAGAGCGGAGGAGCCA+AGG - chr6.1:73029605-73029624 None:intergenic 60.0%
CTGAGCAGCTGAACAGGGAG+AGG - chr6.1:73029297-73029316 None:intergenic 60.0%
GAGTCAAGGGGAGAGAGAGG+GGG - chr6.1:73028001-73028020 None:intergenic 60.0%
GGAGTCAAGGGGAGAGAGAG+GGG - chr6.1:73028002-73028021 None:intergenic 60.0%
GGCCGAGTAGACCTTGTGTG+AGG - chr6.1:73028868-73028887 None:intergenic 60.0%
GTCGAGGAGATGCGGAGATG+AGG - chr6.1:73028846-73028865 None:intergenic 60.0%
!! ACGCTTGGTGGGCTGTGAAC+TGG - chr6.1:73027236-73027255 None:intergenic 60.0%
GCTGAAGGGACGAGCTGAGC+TGG + chr6.1:73026919-73026938 MS.gene05404:CDS 65.0%
GGGGTGAGGCCAAAGGGTCA+AGG - chr6.1:73028798-73028817 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 73026890 73029779 73026890 ID=MS.gene05404
chr6.1 mRNA 73026890 73029779 73026890 ID=MS.gene05404.t1;Parent=MS.gene05404
chr6.1 exon 73026890 73027153 73026890 ID=MS.gene05404.t1.exon1;Parent=MS.gene05404.t1
chr6.1 CDS 73026890 73027153 73026890 ID=cds.MS.gene05404.t1;Parent=MS.gene05404.t1
chr6.1 exon 73027746 73028038 73027746 ID=MS.gene05404.t1.exon2;Parent=MS.gene05404.t1
chr6.1 CDS 73027746 73028038 73027746 ID=cds.MS.gene05404.t1;Parent=MS.gene05404.t1
chr6.1 exon 73028959 73029120 73028959 ID=MS.gene05404.t1.exon3;Parent=MS.gene05404.t1
chr6.1 CDS 73028959 73029120 73028959 ID=cds.MS.gene05404.t1;Parent=MS.gene05404.t1
chr6.1 exon 73029309 73029471 73029309 ID=MS.gene05404.t1.exon4;Parent=MS.gene05404.t1
chr6.1 CDS 73029309 73029471 73029309 ID=cds.MS.gene05404.t1;Parent=MS.gene05404.t1
chr6.1 exon 73029669 73029779 73029669 ID=MS.gene05404.t1.exon5;Parent=MS.gene05404.t1
chr6.1 CDS 73029669 73029779 73029669 ID=cds.MS.gene05404.t1;Parent=MS.gene05404.t1
Gene Sequence

>MS.gene05404

ATGCTGAAGGGTCGAGCTGAGCTGAGCATGCTGAAGGGACGAGCTGAGCTGGTCATGCTGAAGGGACGAGCTGAGCTGGTCATGCTGAAGGGACGAGCTGAGCTAAGCAGGCTGAAGGGACGAGCTGAGCTGAGCATGCTGAAGGGACGAGCTGAGCTGGTCATGCTGAAGGTACGAGCTGAGCTGAGCATGCTGAAGGGACGAGCTGAGCTGGACATGCTTAAGGGTATAGCTGAGTTGGACATGTTGAAGGGTGGAGCTTTCGTGACCTGAACACTCAAGTTGAGATGGATATGTTGAATGGTCAATGTATAGTAAAGTTCATGTGGTATGGTCCTCTATACCAGTTCACAGCCCACCAAGCGTCAAGCTTGTTAAGGCGTAGACGTTTGTTCTTCGTAAAGTCAACCTGCATCAGTCCATAGTCCACCAAGTGTCAAGACTATCAAGGGATAGACGTTTGTTCTTCATAAAATCAACCTGTATCAGTCCACAGTCCACTAAGCGTCAAGCCTGTCAAGGAGTAGACGTTTGTTCTTCACAAGGTCGACCTATTCCAGTCCATATAAAGTAGGGTCTTTAAACAACAATTCTATCTTCATTGCCAGCTTGGCCTTTACTGTCACCATGGCTAGATCCACCACTCTTTTCTCCTTCTCCATGATAGCATAGGCTAAAACCTTGATAAATTTTTAATGGCCAAAACATGAATTTTGCTTATATAAGTTGAGTACACCTACTTTGCTCATACACACTTAAACTCGTCCTAAATAAATCATGTGACAAATAAAGTTCACAACGAATATGAAACCACATCTCTACTATATTGAGTTTTATATTTTATCTTCATGTTTAGCTCAGCAGCTCTGCACTTCCTCTATGTTTAGCACATCGGCAGCTATGCACTTCTCATCTGCTTGACAGCTCGACACTTCTCATCTGCTCGACACTCTTCATCTGCTCGACAGCTCAGCAGCTCTGCGCATCCCCTCAGTTCAACACCTCAGCACCTATGCACTTCTCATCAGCTCGACAACTTGGCAACTCTCATCTTATCGACACCTCTCTTCATTCAACTTCTCGATCCCTTGATGCTTCCACTCTCTCTCCCCCTCTCTCTCCCCTTGACTCCTTAGATTTACATAGCGCGTAACACTCCTCTTAAGACATCAACGAACCCTTATGAATAGTTTGAAATGCTGCTCGGCACTTTTCAGCTGCTCAACAACTCGGCACTTCTCTATGTTTAGCACCTCGGCATCTATCCACTTCTCATCTACTTGACAGCTCGACACTTCTCATCTGCTCGACACTTTTCATATGCTCGACAGCTCAGCAGCTCTGCGCTTCCCCTTAGTTCAACACCTCAGCACCTATGCACTTCTCATCAGCTCGACAACTTGGCAACTCTCATCTTATTGACACCTCTCTTTATTCAACTTCTCGATTCCTTGATGCTTCCACTCTCTCTCCCCCTCTCTCTCCCCTTGACTCCTTAGATTTACATAGCGCGTAACACTCCTCTTAAGACATCAACGAACCCTTATGAATAGTTTGAAATGCTGCTCGACACTTTTCAGCTGCTCAACAACTCGGCACTTCTCTATGTTTAGCACCTCGGCATCTATCCACTTCTCATCTGCTTGACAGCTCGACACTTCTCATCTGCTCGACACTTTTCATATGCTCGACAGCTCAGCAGCTCTGCGCTTCCCCTTAGTTCAACACCTCAGCACCTATGCACTTCTCATCAGCTCGACAACTTGGCAACTCTCATCTTATTGACACCTCTCTTTATTCAACTTCTCGATTCCTTGATGCTTCCACTCTCTCTCTCCCCCTCTCTCTCCCCTTGACTCCTTAGATTTTTACATAATGCATAACGGTTCCCCCTCACCTCTATATCCTTGACCCTTTGGCCTCACCCCTTCTTCACGTCGTACTCTCCTCCACCCTCATCTCCGCATCTCCTCGACCTCACACAAGGTCTACTCGGCCACTAATTTTGCTTAATCACTCTTTTAGCTTCGTTTCACTTTGCTTCATTTACATTGCTGCTTGGCCTTTAGATCTGCTCGGCCACATATCTTCTTGATAGCTCAACAGCTCGGCACTTCTCATCTACTTGGCACCTCTCCCTGTTCAACTGCTCAGTCCCTTGGCTCCTACCTTCTCTCTTACCTGAGTTTCAAACAAGGATGTTCAGTGTCTACGAGAGAGTGTGGTGCCGAGTAGAAGAGAAATGTGTTATGATTGGGTACTTCCTCTACCTCTTCTTCATAACTTATTTTTCAATTGATTTGCTCTTCATCACCCACTTCTATCAATATTGTACAAACATATAGCACAATATTTTGTCTCTTTCTGTTTGAAATGTTGCTTGACACCTCTCATATACTTGGCACCTCTCCCTGTTCAGCTGCTCAGTCCCTTGGCTCATACCTTCTCTCTTCTTGCTCGCCGACAACATTGTAGCTTCACCAAATAACACTTTTCGGCCTTCATTTATTCTCTATTATGCGCAGATCTGCTTGGCCAACATTTCCTCTTTTCCCGGTTCCTCAGACTTGCGTATTTACAAAGTATATCTACTTAGCCCTACGTATACACTAGAAGATGCACATTGAGGTGTACATTTCTCAGGCATCTTTCTCCTCTACTCCACCTAGCCATTTGTTCATCTTCTTAGTCTCATGTTCATAAAAATTCTCTCCTTGGCTCCTCCGCTCTAACCTAACCCAGATCTGCTCAAAACCTCCTTGACTCCTCTCCTCTTCAGCTCAATGTATTTATCAAGGTTTTTGACTTCTATGTAGCTCGGTCATTCCTCCCCCTTCGCATTTTACGAGGGAGTGTGTTAAGCTCGACCTCTATGCAGCTTAGTCTTTAA
Protein sequence

>MS.gene05404.t1

MLKGRAELSMLKGRAELVMLKGRAELVMLKGRAELSRLKGRAELSMLKGRAELVMLKVRAELSMLKGRAELDMLKGIAELDMLKGGAFLSSSALPLCLAHRQLCTSHLLDSSTLLICSTLFICSTAQQLCASPQFNTSAPMHFSSARQLGNSHLIDTSLHSTSRSLDASTLSPPLSPLDSLDLHSASARPHIFLIAQQLGTSHLLGTSPCSTAQSLGSYLLSYLSFKQGCSVSTRECGADCSVPWLIPSLFLLADNIVASPNNTFRPSFILYYAQICLANISSFPGSSDLRIYKLNVFIKVFDFYVARSFLPLRILRGSVLSSTSMQLSL