Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07139.t1 | XP_003625880.2 | 97.8 | 267 | 6 | 0 | 1 | 267 | 532 | 798 | 7.20E-143 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07139.t1 | Q8TB22 | 35.0 | 266 | 154 | 7 | 5 | 261 | 529 | 784 | 1.6e-34 | 147.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07139.t1 | G7KRS7 | 97.8 | 267 | 6 | 0 | 1 | 267 | 532 | 798 | 5.2e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051525 | MS.gene07139 | 0.823397 | 1.42E-53 | -1.69E-46 |
| MS.gene051568 | MS.gene07139 | 0.821787 | 3.35E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene07139 | -0.840524 | 8.26E-58 | -1.69E-46 |
| MS.gene052159 | MS.gene07139 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene053176 | MS.gene07139 | 0.830784 | 2.42E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene07139 | 0.826302 | 2.92E-54 | -1.69E-46 |
| MS.gene054548 | MS.gene07139 | 0.827799 | 1.28E-54 | -1.69E-46 |
| MS.gene054556 | MS.gene07139 | 0.830786 | 2.41E-55 | -1.69E-46 |
| MS.gene054920 | MS.gene07139 | 0.833785 | 4.37E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene07139 | 0.800733 | 1.25E-48 | -1.69E-46 |
| MS.gene055892 | MS.gene07139 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene055893 | MS.gene07139 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene056723 | MS.gene07139 | 0.817008 | 4.12E-52 | -1.69E-46 |
| MS.gene058700 | MS.gene07139 | 0.816746 | 4.72E-52 | -1.69E-46 |
| MS.gene058885 | MS.gene07139 | 0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene07139 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene07139 | -0.805172 | 1.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07139.t1 | MTR_7g108310 | 97.753 | 267 | 6 | 0 | 1 | 267 | 532 | 798 | 0.0 | 538 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07139.t1 | AT4G03200 | 68.821 | 263 | 82 | 0 | 1 | 263 | 423 | 685 | 2.59e-132 | 390 |
| MS.gene07139.t1 | AT4G03200 | 68.821 | 263 | 82 | 0 | 1 | 263 | 556 | 818 | 1.56e-130 | 389 |
Find 65 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACTCGATCTCTATGAATT+TGG | 0.193304 | 7.1:-5600238 | MS.gene07139:CDS |
| AGGTTGGCTTCATTGGTTTC+TGG | 0.215557 | 7.1:-5599943 | MS.gene07139:CDS |
| AACTTCACTCACTGTTCTAT+TGG | 0.220073 | 7.1:+5599554 | None:intergenic |
| ATCCAAAGCTCCTGGTTTCT+TGG | 0.233239 | 7.1:-5600287 | MS.gene07139:CDS |
| ATAAAGCAGCATCCTTTATT+AGG | 0.240439 | 7.1:-5600366 | MS.gene07139:CDS |
| TCTTATAAGGTTGGCTTCAT+TGG | 0.283968 | 7.1:-5599950 | MS.gene07139:CDS |
| TCTGCTGCACAACACATTAA+AGG | 0.286141 | 7.1:+5599678 | None:intergenic |
| TCTCCGCGTTAAATCTTATA+AGG | 0.301812 | 7.1:-5599963 | MS.gene07139:CDS |
| TAACAGCAATATTGCTTTGA+TGG | 0.306227 | 7.1:-5599404 | MS.gene07139:CDS |
| CTTTGTTGTTGGGATCTATA+TGG | 0.320749 | 7.1:+5599452 | None:intergenic |
| ATCCATCTCTTCTTTGTTGT+TGG | 0.329961 | 7.1:+5599441 | None:intergenic |
| TCCATCTCTTCTTTGTTGTT+GGG | 0.337926 | 7.1:+5599442 | None:intergenic |
| GTAAAGTTGATTCCTAATAA+AGG | 0.343575 | 7.1:+5600354 | None:intergenic |
| GCGAAACGCGGAACGTCTAT+TGG | 0.344390 | 7.1:-5599899 | MS.gene07139:intron |
| GGGCACTACAAGTGAAGTTT+TGG | 0.349927 | 7.1:+5599338 | None:intergenic |
| TTTATGGGCCATTGAATTGC+AGG | 0.363878 | 7.1:-5600197 | MS.gene07139:CDS |
| GCTATTCTCAAGTACTCCTT+TGG | 0.366405 | 7.1:+5600391 | None:intergenic |
| ACTTCACTCACTGTTCTATT+GGG | 0.368350 | 7.1:+5599555 | None:intergenic |
| ATCCAAGAAACCAGGAGCTT+TGG | 0.372677 | 7.1:+5600285 | None:intergenic |
| CACCAGTACCACTTGCTTAC+GGG | 0.377865 | 7.1:+5599638 | None:intergenic |
| CGCGTTAAATCTTATAAGGT+TGG | 0.413104 | 7.1:-5599959 | MS.gene07139:CDS |
| CTGGGTTTCCTGCAATTCAA+TGG | 0.422376 | 7.1:+5600189 | None:intergenic |
| GAGTAATCCAGATATCAAAA+AGG | 0.435767 | 7.1:+5600255 | None:intergenic |
| CCACCAGTACCACTTGCTTA+CGG | 0.441446 | 7.1:+5599637 | None:intergenic |
| AATTTGGAGGTGAAATCAAC+TGG | 0.453160 | 7.1:-5600222 | MS.gene07139:CDS |
| GGTGGGTATTTCAATAATAC+AGG | 0.456882 | 7.1:-5600054 | MS.gene07139:CDS |
| TGAGAAAAGATTGAAAGATA+CGG | 0.461770 | 7.1:-5599712 | MS.gene07139:CDS |
| CTCGATCTCTATGAATTTGG+AGG | 0.471691 | 7.1:-5600235 | MS.gene07139:CDS |
| TTCCCGTAAGCAAGTGGTAC+TGG | 0.479467 | 7.1:-5599640 | MS.gene07139:CDS |
| CATGACGGGGCAGAACCCTC+AGG | 0.480394 | 7.1:-5599994 | MS.gene07139:CDS |
| TTTCTTGACAAGGATGGTGG+TGG | 0.499091 | 7.1:-5600072 | MS.gene07139:CDS |
| AATTCTCCATCCAAAGCTCC+TGG | 0.510812 | 7.1:-5600295 | MS.gene07139:CDS |
| TAATACAGGAGAAGATTCTT+CGG | 0.518631 | 7.1:-5600040 | MS.gene07139:CDS |
| AAGTGGTACTGGTGGGTGAA+AGG | 0.520968 | 7.1:-5599629 | MS.gene07139:CDS |
| GGCAGAACCCTCAGGGAACT+CGG | 0.521936 | 7.1:-5599986 | MS.gene07139:CDS |
| TTCGGTTCTTCTCCGTGTGA+AGG | 0.523925 | 7.1:-5600022 | MS.gene07139:CDS |
| GTGTGAAGGAAGATCATGAC+GGG | 0.531942 | 7.1:-5600008 | MS.gene07139:CDS |
| AGCGACGAATGATCAGTGAC+AGG | 0.532190 | 7.1:+5599316 | None:intergenic |
| TCCCAACAACAAAGAAGAGA+TGG | 0.535141 | 7.1:-5599443 | MS.gene07139:CDS |
| AAGCATGCTTTCAAATTCCT+CGG | 0.537135 | 7.1:+5599602 | None:intergenic |
| CCGTAAGCAAGTGGTACTGG+TGG | 0.565112 | 7.1:-5599637 | MS.gene07139:CDS |
| AAGAAACCAGGAGCTTTGGA+TGG | 0.568767 | 7.1:+5600289 | None:intergenic |
| ACTTTGTTTCTTGACAAGGA+TGG | 0.572739 | 7.1:-5600078 | MS.gene07139:CDS |
| GGATACTTTGTTTCTTGACA+AGG | 0.575299 | 7.1:-5600082 | MS.gene07139:CDS |
| TTCTTGACAAGGATGGTGGT+GGG | 0.586109 | 7.1:-5600071 | MS.gene07139:CDS |
| AAGATTGAAAGATACGGCTA+TGG | 0.590163 | 7.1:-5599706 | MS.gene07139:CDS |
| CATTGAATTGCAGGAAACCC+AGG | 0.602432 | 7.1:-5600188 | MS.gene07139:intron |
| TTGTTTCTTGACAAGGATGG+TGG | 0.607716 | 7.1:-5600075 | MS.gene07139:CDS |
| CGTCATGATCTTCCTTCACA+CGG | 0.610972 | 7.1:+5600010 | None:intergenic |
| ATTGAAAGATACGGCTATGG+CGG | 0.616770 | 7.1:-5599703 | MS.gene07139:CDS |
| GCGGAGACCGAGTTCCCTGA+GGG | 0.625563 | 7.1:+5599979 | None:intergenic |
| CGTAAGCAAGTGGTACTGGT+GGG | 0.628787 | 7.1:-5599636 | MS.gene07139:CDS |
| GCGACGAATGATCAGTGACA+GGG | 0.630002 | 7.1:+5599317 | None:intergenic |
| CGCGGAGACCGAGTTCCCTG+AGG | 0.634991 | 7.1:+5599978 | None:intergenic |
| GAATAACTATTCATGCAGCA+AGG | 0.646546 | 7.1:-5599377 | MS.gene07139:CDS |
| TGTACCTTCCCGTAAGCAAG+TGG | 0.651953 | 7.1:-5599646 | MS.gene07139:CDS |
| GCATAATCATCCAAGAAACC+AGG | 0.652211 | 7.1:+5600277 | None:intergenic |
| CAACCTTATAAGATTTAACG+CGG | 0.652953 | 7.1:+5599960 | None:intergenic |
| ATGACGGGGCAGAACCCTCA+GGG | 0.658467 | 7.1:-5599993 | MS.gene07139:CDS |
| AGTACCACTTGCTTACGGGA+AGG | 0.664919 | 7.1:+5599642 | None:intergenic |
| CGTGTGAAGGAAGATCATGA+CGG | 0.667087 | 7.1:-5600009 | MS.gene07139:CDS |
| GGTGGGTGAAAGGACTTCCG+AGG | 0.685823 | 7.1:-5599619 | MS.gene07139:CDS |
| CGACGAATGATCAGTGACAG+GGG | 0.712691 | 7.1:+5599318 | None:intergenic |
| TGTGAAGGAAGATCATGACG+GGG | 0.770414 | 7.1:-5600007 | MS.gene07139:CDS |
| TGAGCATTATAAGCGAAACG+CGG | 0.787842 | 7.1:-5599911 | MS.gene07139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAATGAATATATTATCTACC+AGG | - | chr7.1:5599877-5599896 | MS.gene07139:intron | 25.0% |
| ! | GTCAACAATAATATTTGTGT+TGG | - | chr7.1:5600181-5600200 | MS.gene07139:intron | 25.0% |
| ! | TAGTTGGATAGGATTATTAT+CGG | - | chr7.1:5599854-5599873 | MS.gene07139:intron | 25.0% |
| ! | TGAGAAAAGATTGAAAGATA+CGG | - | chr7.1:5599961-5599980 | MS.gene07139:CDS | 25.0% |
| !! | GTAAAGTTGATTCCTAATAA+AGG | + | chr7.1:5599322-5599341 | None:intergenic | 25.0% |
| AGTTGGATAGGATTATTATC+GGG | - | chr7.1:5599855-5599874 | MS.gene07139:intron | 30.0% | |
| ATAAAGCAGCATCCTTTATT+AGG | - | chr7.1:5599307-5599326 | MS.gene07139:CDS | 30.0% | |
| CAACCTTATAAGATTTAACG+CGG | + | chr7.1:5599716-5599735 | None:intergenic | 30.0% | |
| GAGTAATCCAGATATCAAAA+AGG | + | chr7.1:5599421-5599440 | None:intergenic | 30.0% | |
| TAACAGCAATATTGCTTTGA+TGG | - | chr7.1:5600269-5600288 | MS.gene07139:CDS | 30.0% | |
| TAACTAGGATTCCCTTTAAA+CGG | - | chr7.1:5599922-5599941 | MS.gene07139:CDS | 30.0% | |
| TAATACAGGAGAAGATTCTT+CGG | - | chr7.1:5599633-5599652 | MS.gene07139:CDS | 30.0% | |
| TTACTCGATCTCTATGAATT+TGG | - | chr7.1:5599435-5599454 | MS.gene07139:CDS | 30.0% | |
| ! | GATTATGCCTTTTTGATATC+TGG | - | chr7.1:5599411-5599430 | MS.gene07139:CDS | 30.0% |
| !! | ACAAAGAAGAGATGGATTTT+TGG | - | chr7.1:5600238-5600257 | MS.gene07139:CDS | 30.0% |
| !! | CAAAGAAGAGATGGATTTTT+GGG | - | chr7.1:5600239-5600258 | MS.gene07139:CDS | 30.0% |
| !!! | TGAAATCAACTGGCTTTTAT+GGG | - | chr7.1:5599461-5599480 | MS.gene07139:intron | 30.0% |
| AACTTCACTCACTGTTCTAT+TGG | + | chr7.1:5600122-5600141 | None:intergenic | 35.0% | |
| AAGATTGAAAGATACGGCTA+TGG | - | chr7.1:5599967-5599986 | MS.gene07139:CDS | 35.0% | |
| AAGCATGCTTTCAAATTCCT+CGG | + | chr7.1:5600074-5600093 | None:intergenic | 35.0% | |
| AATTTGGAGGTGAAATCAAC+TGG | - | chr7.1:5599451-5599470 | MS.gene07139:CDS | 35.0% | |
| ACTTCACTCACTGTTCTATT+GGG | + | chr7.1:5600121-5600140 | None:intergenic | 35.0% | |
| CGCGTTAAATCTTATAAGGT+TGG | - | chr7.1:5599714-5599733 | MS.gene07139:CDS | 35.0% | |
| GAATAACTATTCATGCAGCA+AGG | - | chr7.1:5600296-5600315 | MS.gene07139:CDS | 35.0% | |
| GGTGGGTATTTCAATAATAC+AGG | - | chr7.1:5599619-5599638 | MS.gene07139:CDS | 35.0% | |
| TAGATCAGTTGCAACTAACT+AGG | - | chr7.1:5599907-5599926 | MS.gene07139:CDS | 35.0% | |
| TCTCCGCGTTAAATCTTATA+AGG | - | chr7.1:5599710-5599729 | MS.gene07139:CDS | 35.0% | |
| ! | ACTTTGTTTCTTGACAAGGA+TGG | - | chr7.1:5599595-5599614 | MS.gene07139:CDS | 35.0% |
| ! | ATCCATCTCTTCTTTGTTGT+TGG | + | chr7.1:5600235-5600254 | None:intergenic | 35.0% |
| ! | GGATACTTTGTTTCTTGACA+AGG | - | chr7.1:5599591-5599610 | MS.gene07139:CDS | 35.0% |
| !! | CTTTGTTGTTGGGATCTATA+TGG | + | chr7.1:5600224-5600243 | None:intergenic | 35.0% |
| !! | TCCATCTCTTCTTTGTTGTT+GGG | + | chr7.1:5600234-5600253 | None:intergenic | 35.0% |
| !! | TCTTATAAGGTTGGCTTCAT+TGG | - | chr7.1:5599723-5599742 | MS.gene07139:CDS | 35.0% |
| !! | TTTGTGTTGGTGTTAATTGC+AGG | - | chr7.1:5600194-5600213 | MS.gene07139:CDS | 35.0% |
| !!! | GGAGAAACTGTTTTTTCATG+AGG | + | chr7.1:5599822-5599841 | None:intergenic | 35.0% |
| !!! | GTGAAATCAACTGGCTTTTA+TGG | - | chr7.1:5599460-5599479 | MS.gene07139:CDS | 35.0% |
| !!! | GTTTTTTCATGAGGAAAGAG+AGG | + | chr7.1:5599813-5599832 | None:intergenic | 35.0% |
| AGATTGATGTCTGGACTTGA+TGG | - | chr7.1:5599511-5599530 | MS.gene07139:intron | 40.0% | |
| ATCCAACTAGCGCATAAACA+AGG | + | chr7.1:5599843-5599862 | None:intergenic | 40.0% | |
| ATTGAAAGATACGGCTATGG+CGG | - | chr7.1:5599970-5599989 | MS.gene07139:CDS | 40.0% | |
| CCAGACATCAATCTTTACCT+GGG | + | chr7.1:5599505-5599524 | None:intergenic | 40.0% | |
| CTCGATCTCTATGAATTTGG+AGG | - | chr7.1:5599438-5599457 | MS.gene07139:CDS | 40.0% | |
| GCATAATCATCCAAGAAACC+AGG | + | chr7.1:5599399-5599418 | None:intergenic | 40.0% | |
| GCTATTCTCAAGTACTCCTT+TGG | + | chr7.1:5599285-5599304 | None:intergenic | 40.0% | |
| TAATGAGATGAACTGCTTGC+AGG | - | chr7.1:5599570-5599589 | MS.gene07139:CDS | 40.0% | |
| TCCAGACATCAATCTTTACC+TGG | + | chr7.1:5599506-5599525 | None:intergenic | 40.0% | |
| TCCCAACAACAAAGAAGAGA+TGG | - | chr7.1:5600230-5600249 | MS.gene07139:CDS | 40.0% | |
| TCTGCTGCACAACACATTAA+AGG | + | chr7.1:5599998-5600017 | None:intergenic | 40.0% | |
| TCTGGACTTGATGGAAGTTT+CGG | - | chr7.1:5599520-5599539 | MS.gene07139:intron | 40.0% | |
| TGAGCATTATAAGCGAAACG+CGG | - | chr7.1:5599762-5599781 | MS.gene07139:intron | 40.0% | |
| TGCCTGCAATACCGTTTAAA+GGG | + | chr7.1:5599936-5599955 | None:intergenic | 40.0% | |
| TGTTTATGCGCTAGTTGGAT+AGG | - | chr7.1:5599843-5599862 | MS.gene07139:intron | 40.0% | |
| TTCCCTTTAAACGGTATTGC+AGG | - | chr7.1:5599931-5599950 | MS.gene07139:CDS | 40.0% | |
| TTGACAACCATGCAGAAACA+TGG | + | chr7.1:5600166-5600185 | None:intergenic | 40.0% | |
| TTTATGGGCCATTGAATTGC+AGG | - | chr7.1:5599476-5599495 | MS.gene07139:intron | 40.0% | |
| TTTCATGAGGAAAGAGAGGA+GGG | + | chr7.1:5599809-5599828 | None:intergenic | 40.0% | |
| ! | AATGTCTCCATGTTTCTGCA+TGG | - | chr7.1:5600156-5600175 | MS.gene07139:intron | 40.0% |
| ! | TTGTTTCTTGACAAGGATGG+TGG | - | chr7.1:5599598-5599617 | MS.gene07139:CDS | 40.0% |
| ! | TTTTCATGAGGAAAGAGAGG+AGG | + | chr7.1:5599810-5599829 | None:intergenic | 40.0% |
| AATTCTCCATCCAAAGCTCC+TGG | - | chr7.1:5599378-5599397 | MS.gene07139:CDS | 45.0% | |
| ATCCAAAGCTCCTGGTTTCT+TGG | - | chr7.1:5599386-5599405 | MS.gene07139:CDS | 45.0% | |
| ATCCAAGAAACCAGGAGCTT+TGG | + | chr7.1:5599391-5599410 | None:intergenic | 45.0% | |
| CAACTGATCTAGTGATCACC+TGG | + | chr7.1:5599898-5599917 | None:intergenic | 45.0% | |
| CATTGAATTGCAGGAAACCC+AGG | - | chr7.1:5599485-5599504 | MS.gene07139:intron | 45.0% | |
| CCCAGGTAAAGATTGATGTC+TGG | - | chr7.1:5599502-5599521 | MS.gene07139:intron | 45.0% | |
| CGTCATGATCTTCCTTCACA+CGG | + | chr7.1:5599666-5599685 | None:intergenic | 45.0% | |
| CGTGTGAAGGAAGATCATGA+CGG | - | chr7.1:5599664-5599683 | MS.gene07139:CDS | 45.0% | |
| CTCATTAGCAACAGAAGTCC+TGG | + | chr7.1:5599557-5599576 | None:intergenic | 45.0% | |
| CTGCCTGCAATACCGTTTAA+AGG | + | chr7.1:5599937-5599956 | None:intergenic | 45.0% | |
| CTGGGTTTCCTGCAATTCAA+TGG | + | chr7.1:5599487-5599506 | None:intergenic | 45.0% | |
| GTGTGAAGGAAGATCATGAC+GGG | - | chr7.1:5599665-5599684 | MS.gene07139:CDS | 45.0% | |
| TGTGAAGGAAGATCATGACG+GGG | - | chr7.1:5599666-5599685 | MS.gene07139:CDS | 45.0% | |
| TTCATGAGGAAAGAGAGGAG+GGG | + | chr7.1:5599808-5599827 | None:intergenic | 45.0% | |
| ! | CTCCTTGTTTATGCGCTAGT+TGG | - | chr7.1:5599838-5599857 | MS.gene07139:intron | 45.0% |
| ! | GGGCACTACAAGTGAAGTTT+TGG | + | chr7.1:5600338-5600357 | None:intergenic | 45.0% |
| ! | GTTTCGGTGATTTTCTTGCC+AGG | - | chr7.1:5599536-5599555 | MS.gene07139:intron | 45.0% |
| ! | TTCTTGACAAGGATGGTGGT+GGG | - | chr7.1:5599602-5599621 | MS.gene07139:CDS | 45.0% |
| ! | TTTCTTGACAAGGATGGTGG+TGG | - | chr7.1:5599601-5599620 | MS.gene07139:CDS | 45.0% |
| !! | AAGAAACCAGGAGCTTTGGA+TGG | + | chr7.1:5599387-5599406 | None:intergenic | 45.0% |
| !! | AGGTTGGCTTCATTGGTTTC+TGG | - | chr7.1:5599730-5599749 | MS.gene07139:intron | 45.0% |
| AGCGACGAATGATCAGTGAC+AGG | + | chr7.1:5600360-5600379 | None:intergenic | 50.0% | |
| AGTACCACTTGCTTACGGGA+AGG | + | chr7.1:5600034-5600053 | None:intergenic | 50.0% | |
| CACCAGTACCACTTGCTTAC+GGG | + | chr7.1:5600038-5600057 | None:intergenic | 50.0% | |
| CCACCAGTACCACTTGCTTA+CGG | + | chr7.1:5600039-5600058 | None:intergenic | 50.0% | |
| CGACGAATGATCAGTGACAG+GGG | + | chr7.1:5600358-5600377 | None:intergenic | 50.0% | |
| GCGACGAATGATCAGTGACA+GGG | + | chr7.1:5600359-5600378 | None:intergenic | 50.0% | |
| TGTACCTTCCCGTAAGCAAG+TGG | - | chr7.1:5600027-5600046 | MS.gene07139:CDS | 50.0% | |
| TTCCCGTAAGCAAGTGGTAC+TGG | - | chr7.1:5600033-5600052 | MS.gene07139:CDS | 50.0% | |
| TTCGGTTCTTCTCCGTGTGA+AGG | - | chr7.1:5599651-5599670 | MS.gene07139:CDS | 50.0% | |
| !! | AAGTGGTACTGGTGGGTGAA+AGG | - | chr7.1:5600044-5600063 | MS.gene07139:CDS | 50.0% |
| !! | CGTAAGCAAGTGGTACTGGT+GGG | - | chr7.1:5600037-5600056 | MS.gene07139:CDS | 50.0% |
| GCGAAACGCGGAACGTCTAT+TGG | - | chr7.1:5599774-5599793 | MS.gene07139:intron | 55.0% | |
| ! | CCGTAAGCAAGTGGTACTGG+TGG | - | chr7.1:5600036-5600055 | MS.gene07139:CDS | 55.0% |
| GGCAGAACCCTCAGGGAACT+CGG | - | chr7.1:5599687-5599706 | MS.gene07139:CDS | 60.0% | |
| GGTGGGTGAAAGGACTTCCG+AGG | - | chr7.1:5600054-5600073 | MS.gene07139:CDS | 60.0% | |
| ! | ATGACGGGGCAGAACCCTCA+GGG | - | chr7.1:5599680-5599699 | MS.gene07139:CDS | 60.0% |
| GCGGAGACCGAGTTCCCTGA+GGG | + | chr7.1:5599697-5599716 | None:intergenic | 65.0% | |
| ! | CATGACGGGGCAGAACCCTC+AGG | - | chr7.1:5599679-5599698 | MS.gene07139:CDS | 65.0% |
| CGCGGAGACCGAGTTCCCTG+AGG | + | chr7.1:5599698-5599717 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5599282 | 5600413 | 5599282 | ID=MS.gene07139 |
| chr7.1 | mRNA | 5599282 | 5600413 | 5599282 | ID=MS.gene07139.t1;Parent=MS.gene07139 |
| chr7.1 | exon | 5600189 | 5600413 | 5600189 | ID=MS.gene07139.t1.exon1;Parent=MS.gene07139.t1 |
| chr7.1 | CDS | 5600189 | 5600413 | 5600189 | ID=cds.MS.gene07139.t1;Parent=MS.gene07139.t1 |
| chr7.1 | exon | 5599900 | 5600103 | 5599900 | ID=MS.gene07139.t1.exon2;Parent=MS.gene07139.t1 |
| chr7.1 | CDS | 5599900 | 5600103 | 5599900 | ID=cds.MS.gene07139.t1;Parent=MS.gene07139.t1 |
| chr7.1 | exon | 5599566 | 5599742 | 5599566 | ID=MS.gene07139.t1.exon3;Parent=MS.gene07139.t1 |
| chr7.1 | CDS | 5599566 | 5599742 | 5599566 | ID=cds.MS.gene07139.t1;Parent=MS.gene07139.t1 |
| chr7.1 | exon | 5599282 | 5599479 | 5599282 | ID=MS.gene07139.t1.exon4;Parent=MS.gene07139.t1 |
| chr7.1 | CDS | 5599282 | 5599479 | 5599282 | ID=cds.MS.gene07139.t1;Parent=MS.gene07139.t1 |
| Gene Sequence |
| Protein sequence |
