Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071918.t1 | XP_003593198.2 | 95.9 | 1028 | 38 | 3 | 1 | 1026 | 15 | 1040 | 0.00E+00 | 1872.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071918.t1 | Q6NPP4 | 51.6 | 1067 | 444 | 19 | 1 | 1026 | 15 | 1050 | 1.1e-259 | 897.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071918.t1 | G7INW0 | 95.9 | 1028 | 38 | 3 | 1 | 1026 | 15 | 1040 | 0.0e+00 | 1872.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene071918 | 0.825473 | 4.60E-54 | -1.69E-46 |
MS.gene049983 | MS.gene071918 | 0.801712 | 7.91E-49 | -1.69E-46 |
MS.gene050646 | MS.gene071918 | 0.840492 | 8.42E-58 | -1.69E-46 |
MS.gene050654 | MS.gene071918 | 0.812971 | 3.24E-51 | -1.69E-46 |
MS.gene051209 | MS.gene071918 | 0.85079 | 1.35E-60 | -1.69E-46 |
MS.gene052034 | MS.gene071918 | 0.83966 | 1.39E-57 | -1.69E-46 |
MS.gene052036 | MS.gene071918 | 0.806922 | 6.50E-50 | -1.69E-46 |
MS.gene052118 | MS.gene071918 | 0.801491 | 8.78E-49 | -1.69E-46 |
MS.gene052609 | MS.gene071918 | 0.811369 | 7.25E-51 | -1.69E-46 |
MS.gene052776 | MS.gene071918 | 0.804353 | 2.25E-49 | -1.69E-46 |
MS.gene053486 | MS.gene071918 | 0.85602 | 4.27E-62 | -1.69E-46 |
MS.gene053620 | MS.gene071918 | 0.806937 | 6.45E-50 | -1.69E-46 |
MS.gene054893 | MS.gene071918 | 0.801047 | 1.08E-48 | -1.69E-46 |
MS.gene056045 | MS.gene071918 | 0.822053 | 2.91E-53 | -1.69E-46 |
MS.gene05615 | MS.gene071918 | 0.812152 | 4.90E-51 | -1.69E-46 |
MS.gene056519 | MS.gene071918 | 0.807884 | 4.06E-50 | -1.69E-46 |
MS.gene056973 | MS.gene071918 | 0.865838 | 4.42E-65 | -1.69E-46 |
MS.gene057174 | MS.gene071918 | 0.848083 | 7.68E-60 | -1.69E-46 |
MS.gene057919 | MS.gene071918 | 0.824233 | 9.02E-54 | -1.69E-46 |
MS.gene058292 | MS.gene071918 | 0.803423 | 3.51E-49 | -1.69E-46 |
MS.gene058520 | MS.gene071918 | 0.820525 | 6.55E-53 | -1.69E-46 |
MS.gene060933 | MS.gene071918 | 0.856877 | 2.39E-62 | -1.69E-46 |
MS.gene060937 | MS.gene071918 | 0.825611 | 4.27E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCCAAAATGTTATCTTCT+TGG | 0.180507 | 2.2:+71477010 | None:intergenic |
ACCTGTGAGACGCACATTAT+TGG | 0.203091 | 2.2:-71475987 | MS.gene071918:CDS |
CAGGATGAGGATGATGAATT+TGG | 0.206392 | 2.2:-71473437 | MS.gene071918:CDS |
TCTTTAAGGCAGAGGGTTTC+AGG | 0.219816 | 2.2:+71473551 | None:intergenic |
TTGGAATTTGCATCTGATTA+TGG | 0.224990 | 2.2:-71476208 | MS.gene071918:CDS |
GTATCCAAGGGTGCTGATTC+TGG | 0.228095 | 2.2:-71473809 | MS.gene071918:CDS |
TGACCAAGAAGATAACATTT+TGG | 0.230414 | 2.2:-71477013 | MS.gene071918:CDS |
TCTTTCTCTTCTAGCTTCTA+AGG | 0.232278 | 2.2:-71473396 | MS.gene071918:CDS |
TTAACTCCAGCAGCTAAAAT+TGG | 0.236860 | 2.2:+71474639 | None:intergenic |
GCTTGCACAACAAAACTATT+TGG | 0.243585 | 2.2:-71476098 | MS.gene071918:CDS |
GTGAAATTCTTCGTAATTAT+CGG | 0.251549 | 2.2:-71480563 | MS.gene071918:CDS |
GGTAGTCAGCAAGAAGTTTC+AGG | 0.273985 | 2.2:-71473635 | MS.gene071918:CDS |
TATCTGGCAGGATTGTAATA+TGG | 0.281495 | 2.2:-71471768 | MS.gene071918:intron |
TTACGTGAGGATGCTGATTC+AGG | 0.282437 | 2.2:-71477447 | MS.gene071918:intron |
CTTTACCCAATCATTGAGTT+TGG | 0.288531 | 2.2:-71476227 | MS.gene071918:CDS |
CAGAGTAACAAGTCAAATAT+TGG | 0.290234 | 2.2:-71477606 | MS.gene071918:CDS |
CTAAATGTATCCCTGTTAAA+AGG | 0.293817 | 2.2:+71477168 | None:intergenic |
TTAGAAAGGACGGGCATAAT+TGG | 0.298000 | 2.2:-71479532 | MS.gene071918:CDS |
AAGCAGTCAGAGAATCTTTA+AGG | 0.307483 | 2.2:+71473537 | None:intergenic |
CATGGACAGTCATCAGTTTC+TGG | 0.308915 | 2.2:-71477207 | MS.gene071918:CDS |
GGATGATTACGATTATTTAA+AGG | 0.310131 | 2.2:-71472023 | MS.gene071918:CDS |
GTTCTGCCTGAAGGAGATTC+TGG | 0.319177 | 2.2:+71473767 | None:intergenic |
AGATCGAAAAGGCCCTTTCT+AGG | 0.321423 | 2.2:-71471976 | MS.gene071918:CDS |
GATTATGGAACTGGTTTACT+AGG | 0.326951 | 2.2:-71476193 | MS.gene071918:CDS |
GATAATCAATCAAATGCTAT+AGG | 0.329621 | 2.2:+71471662 | None:intergenic |
TGTTGTGCAAGCTTCTCTTT+TGG | 0.331127 | 2.2:+71476109 | None:intergenic |
TGCAACTGGTCCTGTATGTT+TGG | 0.335131 | 2.2:-71475200 | MS.gene071918:CDS |
CCCTCAAAGGTTTGATTTGA+AGG | 0.340226 | 2.2:+71474930 | None:intergenic |
TCTGTGCAGGTGTTGATTAT+TGG | 0.340351 | 2.2:-71475257 | MS.gene071918:intron |
AAAATACCTGCCAATTTGAT+TGG | 0.342720 | 2.2:+71476932 | None:intergenic |
CTCAGCCTCTCCAATCAAAT+TGG | 0.345074 | 2.2:-71476942 | MS.gene071918:CDS |
CATAGTATTTGTCCATTACT+TGG | 0.351108 | 2.2:-71478731 | MS.gene071918:CDS |
ATCTGGCAGGATTGTAATAT+GGG | 0.355450 | 2.2:-71471767 | MS.gene071918:intron |
GGTGGCCTTGTATGAGGTTC+TGG | 0.361559 | 2.2:+71480525 | None:intergenic |
GGGGCTTTATTAAGGGCTTC+TGG | 0.366885 | 2.2:+71472073 | None:intergenic |
TGTCCATTACTTGGAAGTTA+AGG | 0.370935 | 2.2:-71478722 | MS.gene071918:intron |
CAAATTCCAAACTCAATGAT+TGG | 0.374023 | 2.2:+71476221 | None:intergenic |
TTTGCATCTGATTATGGAAC+TGG | 0.378088 | 2.2:-71476202 | MS.gene071918:CDS |
TTACCTGGTGACCTCTTACA+TGG | 0.380343 | 2.2:+71472191 | None:intergenic |
CATCTGGTCTGTGGGAATCC+TGG | 0.384728 | 2.2:-71472149 | MS.gene071918:CDS |
GCAACTGGTCCTGTATGTTT+GGG | 0.385202 | 2.2:-71475199 | MS.gene071918:CDS |
TTTAACAGGGATACATTTAG+AGG | 0.386399 | 2.2:-71477165 | MS.gene071918:CDS |
GACTCAGCATAAGCCCATTT+AGG | 0.391534 | 2.2:+71475767 | None:intergenic |
CCTGCTGAGGTTGTAGCTAA+TGG | 0.392673 | 2.2:-71475164 | MS.gene071918:CDS |
TAAAGTATCTCAAAACCTTC+CGG | 0.392881 | 2.2:+71479552 | None:intergenic |
CTAGGGAACGAAGCTGATAA+TGG | 0.396208 | 2.2:-71476175 | MS.gene071918:CDS |
AGCAGAAGTGGCCTTACTAT+TGG | 0.400345 | 2.2:-71476976 | MS.gene071918:CDS |
CAGCTGTTCTTGATTATGAC+TGG | 0.407104 | 2.2:-71474671 | MS.gene071918:CDS |
AGGGATACATTTAGAGGAAA+TGG | 0.409782 | 2.2:-71477159 | MS.gene071918:CDS |
AAGCTCCTCCTCACAAGGTT+GGG | 0.412362 | 2.2:-71475127 | MS.gene071918:CDS |
CAATTCTTTGACGAATGATC+AGG | 0.413739 | 2.2:+71473279 | None:intergenic |
GGAAGAAGAATATTCAAGTA+AGG | 0.417973 | 2.2:-71474859 | MS.gene071918:CDS |
TCTATGTAACATGTGCCAAT+AGG | 0.420339 | 2.2:-71475094 | MS.gene071918:CDS |
CCCTTCAAATCAAACCTTTG+AGG | 0.420394 | 2.2:-71474931 | MS.gene071918:CDS |
GCTTCTAAGGCACGCAAGTC+AGG | 0.423144 | 2.2:-71473383 | MS.gene071918:CDS |
CCTGAGCCCATCTCTGTCTC+AGG | 0.426510 | 2.2:-71475819 | MS.gene071918:CDS |
CCATCTCCAGAATCTCCTTC+AGG | 0.430350 | 2.2:-71473773 | MS.gene071918:CDS |
CAGTTGCAGGTTGTAACATC+TGG | 0.430823 | 2.2:+71475215 | None:intergenic |
AAGGTCAACTCTCCGTCGTC+TGG | 0.432444 | 2.2:-71477543 | MS.gene071918:CDS |
CCGGTCGCAACCACCGATGT+TGG | 0.433542 | 2.2:+71480595 | None:intergenic |
CGGTCGCAACCACCGATGTT+GGG | 0.433643 | 2.2:+71480596 | None:intergenic |
ATGACATGCTACTTCATTTG+CGG | 0.437214 | 2.2:-71474986 | MS.gene071918:CDS |
TCAAAGAATTGTTAAAATCC+AGG | 0.437764 | 2.2:-71473267 | MS.gene071918:intron |
ATAATCAATCAAATGCTATA+GGG | 0.441651 | 2.2:+71471663 | None:intergenic |
TGGTTGGACGGCCTTACATT+GGG | 0.443438 | 2.2:-71474595 | MS.gene071918:CDS |
TTGGCACATGTTACATAGAA+AGG | 0.446004 | 2.2:+71475098 | None:intergenic |
AATCCTCACCTGGTATTTCA+TGG | 0.446131 | 2.2:-71475880 | MS.gene071918:CDS |
AAACATACAGGACCAGTTGC+AGG | 0.446855 | 2.2:+71475202 | None:intergenic |
CAGCAGCTTGTGTCGCGTTA+CGG | 0.448050 | 2.2:+71473513 | None:intergenic |
TAACTCCAGCAGCTAAAATT+GGG | 0.448147 | 2.2:+71474640 | None:intergenic |
CCGTCCTTATCTAACACATT+TGG | 0.452434 | 2.2:+71474714 | None:intergenic |
CGGTATTGAGCCCGTGCCTC+TGG | 0.453091 | 2.2:+71471932 | None:intergenic |
TTCACTGCAAGCTAACCTAT+TGG | 0.453999 | 2.2:+71475079 | None:intergenic |
AAAGATGTATAGCTGCTAGT+TGG | 0.455617 | 2.2:+71477468 | None:intergenic |
ACAGGATGCCGCCCAATGTA+AGG | 0.456105 | 2.2:+71474584 | None:intergenic |
AATGGTGCTACTTGCATTGA+TGG | 0.458677 | 2.2:-71477141 | MS.gene071918:CDS |
TCCTCCTCACAAGGTTGGGC+GGG | 0.458863 | 2.2:-71475123 | MS.gene071918:CDS |
TGCTGATTCTGGAGCATTGA+CGG | 0.459675 | 2.2:-71473798 | MS.gene071918:CDS |
TGCTCCAGAATCAGCACCCT+TGG | 0.461037 | 2.2:+71473805 | None:intergenic |
CAGAGGCACGGGCTCAATAC+CGG | 0.461621 | 2.2:-71471931 | MS.gene071918:CDS |
CCTTCAAATCAAACCTTTGA+GGG | 0.462323 | 2.2:-71474930 | MS.gene071918:CDS |
CCTGAGACAGAGATGGGCTC+AGG | 0.464721 | 2.2:+71475819 | None:intergenic |
AATGGGCACAAAGGGCTCTC+TGG | 0.465228 | 2.2:-71473722 | MS.gene071918:CDS |
ACAAAATGATTCTCTGAAAG+AGG | 0.465543 | 2.2:-71472044 | MS.gene071918:CDS |
TGAAGAAGCATCTGTTTCAT+AGG | 0.467192 | 2.2:-71474797 | MS.gene071918:CDS |
CGTGAATTTGATTTCAGAGA+TGG | 0.467621 | 2.2:-71475053 | MS.gene071918:CDS |
TCCAATAATGTGCGTCTCAC+AGG | 0.470138 | 2.2:+71475986 | None:intergenic |
TATTTGGAAGAGAAGGTAGA+TGG | 0.471256 | 2.2:-71476082 | MS.gene071918:CDS |
CATCCACTGTGAGGGATTCA+AGG | 0.472437 | 2.2:+71473669 | None:intergenic |
AACTCCCTGCTCCAATAGTA+AGG | 0.472930 | 2.2:+71476965 | None:intergenic |
ATGGTTGGACGGCCTTACAT+TGG | 0.472956 | 2.2:-71474596 | MS.gene071918:CDS |
CGCTGGAGACGCAAGGGCAG+TGG | 0.473291 | 2.2:-71472112 | MS.gene071918:CDS |
CAAGCTCCTCCTCACAAGGT+TGG | 0.474268 | 2.2:-71475128 | MS.gene071918:CDS |
CTCCTCCTCACAAGGTTGGG+CGG | 0.475202 | 2.2:-71475124 | MS.gene071918:CDS |
CAAACTCAATGATTGGGTAA+AGG | 0.475831 | 2.2:+71476228 | None:intergenic |
TAATGTGCGTCTCACAGGTA+AGG | 0.477384 | 2.2:+71475991 | None:intergenic |
CTGTATGTTTGGGGAAGTTG+AGG | 0.477972 | 2.2:-71475189 | MS.gene071918:CDS |
CAGATCTCGCCTCTAGCAAT+GGG | 0.478573 | 2.2:-71473739 | MS.gene071918:CDS |
AATCAGCACCCTTGGATACA+AGG | 0.479075 | 2.2:+71473813 | None:intergenic |
AGCAGTATAAAACTGTCATC+TGG | 0.481921 | 2.2:-71472165 | MS.gene071918:CDS |
AGTTGGCTTCCTTGTATCCA+AGG | 0.484192 | 2.2:-71473822 | MS.gene071918:CDS |
CGGTGGATTACTAAAGCCCT+TGG | 0.485564 | 2.2:-71475926 | MS.gene071918:CDS |
ATTGGGCGGCATCCTGTGGC+AGG | 0.485727 | 2.2:-71474578 | MS.gene071918:intron |
CCTCTAGCAATGGGCACAAA+GGG | 0.489771 | 2.2:-71473730 | MS.gene071918:CDS |
TGAAGACTTCCGTCAAAAGA+AGG | 0.490208 | 2.2:-71471891 | MS.gene071918:intron |
GTTTGATTTGAAGGGTGCAC+TGG | 0.490238 | 2.2:+71474939 | None:intergenic |
CCTTTCTAGGGTGAAGTCCA+TGG | 0.491834 | 2.2:-71471963 | MS.gene071918:CDS |
AAATTCCAAACTCAATGATT+GGG | 0.492039 | 2.2:+71476222 | None:intergenic |
CAGAGAATCTTTAAGGCAGA+GGG | 0.492056 | 2.2:+71473544 | None:intergenic |
TGTGTTAGATAAGGACGGGC+AGG | 0.492165 | 2.2:-71474709 | MS.gene071918:CDS |
AAGATGTATAGCTGCTAGTT+GGG | 0.493026 | 2.2:+71477469 | None:intergenic |
TGGATAGGGATGAGAGCTTG+AGG | 0.493574 | 2.2:-71475967 | MS.gene071918:CDS |
AGTGGCCTTACTATTGGAGC+AGG | 0.493890 | 2.2:-71476970 | MS.gene071918:CDS |
GCATTGATGGCCAGGCAACA+TGG | 0.494294 | 2.2:-71477128 | MS.gene071918:CDS |
ATGTAAGAGGTCACCAGGTA+AGG | 0.494388 | 2.2:-71472189 | MS.gene071918:CDS |
CTCAATGATTGGGTAAAGGT+TGG | 0.494683 | 2.2:+71476232 | None:intergenic |
AGACTGTGTCCCATGTTGCC+TGG | 0.495192 | 2.2:+71477118 | None:intergenic |
AAGGTAACTGAGAGTGGTAA+AGG | 0.495980 | 2.2:-71474738 | MS.gene071918:CDS |
CCATGGACTTCACCCTAGAA+AGG | 0.498406 | 2.2:+71471963 | None:intergenic |
ATTTGGTTTGTTAGATCAGC+GGG | 0.499725 | 2.2:-71473420 | MS.gene071918:CDS |
TACCTGGTGACCTCTTACAT+GGG | 0.500074 | 2.2:+71472192 | None:intergenic |
TCAGAGAATCTTTAAGGCAG+AGG | 0.503635 | 2.2:+71473543 | None:intergenic |
GCCTCTCCAATCAAATTGGC+AGG | 0.503644 | 2.2:-71476938 | MS.gene071918:intron |
GCAGATCTCGCCTCTAGCAA+TGG | 0.504053 | 2.2:-71473740 | MS.gene071918:CDS |
CTCAACTTCCCCAAACATAC+AGG | 0.505769 | 2.2:+71475190 | None:intergenic |
TGCTACTTGCATTGATGGCC+AGG | 0.506993 | 2.2:-71477136 | MS.gene071918:CDS |
CCTGAAGGAGATTCTGGAGA+TGG | 0.507277 | 2.2:+71473773 | None:intergenic |
CAGATGTTACAACCTGCAAC+TGG | 0.507860 | 2.2:-71475214 | MS.gene071918:CDS |
CATGCTACTTCATTTGCGGC+TGG | 0.508379 | 2.2:-71474982 | MS.gene071918:CDS |
AAAAGAGGAAAAGATCGAAA+AGG | 0.508765 | 2.2:-71471987 | MS.gene071918:CDS |
ATACCTTAACTTCCAAGTAA+TGG | 0.508835 | 2.2:+71478719 | None:intergenic |
TTAAAGAGAAACTGTACTCA+TGG | 0.508882 | 2.2:-71474770 | MS.gene071918:CDS |
TAGGGATGAGAGCTTGAGGA+AGG | 0.513141 | 2.2:-71475963 | MS.gene071918:CDS |
AAATGTTATCTTCTTGGTCA+AGG | 0.513865 | 2.2:+71477016 | None:intergenic |
CCAACATCGGTGGTTGCGAC+CGG | 0.513991 | 2.2:-71480595 | MS.gene071918:CDS |
CCTCAAAGGTTTGATTTGAA+GGG | 0.514709 | 2.2:+71474931 | None:intergenic |
ATTACGATTATTTAAAGGAA+GGG | 0.515479 | 2.2:-71472018 | MS.gene071918:CDS |
GATCGAAAAGGCCCTTTCTA+GGG | 0.520085 | 2.2:-71471975 | MS.gene071918:CDS |
GTACTCGGTGGCCTTGTATG+AGG | 0.526249 | 2.2:+71480519 | None:intergenic |
TAATTAATAGTTTCTTCACT+AGG | 0.526565 | 2.2:+71476016 | None:intergenic |
TGTGAGGGATTCAAGGTGGC+TGG | 0.528273 | 2.2:+71473676 | None:intergenic |
TGAGACGCACATTATTGGAT+AGG | 0.528829 | 2.2:-71475982 | MS.gene071918:CDS |
TTACATTGGGCGGCATCCTG+TGG | 0.529048 | 2.2:-71474582 | MS.gene071918:CDS |
CCATTAGCTACAACCTCAGC+AGG | 0.529864 | 2.2:+71475164 | None:intergenic |
AGGTAACTGAGAGTGGTAAA+GGG | 0.533583 | 2.2:-71474737 | MS.gene071918:CDS |
GGAAGAGCAGACTGTAGAGA+TGG | 0.533838 | 2.2:-71474838 | MS.gene071918:CDS |
TACTAAAGCCCTTGGAGAGG+TGG | 0.534922 | 2.2:-71475918 | MS.gene071918:CDS |
TGGCACATGTTACATAGAAA+GGG | 0.535451 | 2.2:+71475099 | None:intergenic |
TTGAGATACTTTAGAAAGGA+CGG | 0.535823 | 2.2:-71479542 | MS.gene071918:CDS |
TTGTCAAGCTCCTCCTCACA+AGG | 0.536404 | 2.2:-71475132 | MS.gene071918:CDS |
AAAACTGTCATCTGGTCTGT+GGG | 0.538080 | 2.2:-71472157 | MS.gene071918:CDS |
TGAGATACTTTAGAAAGGAC+GGG | 0.540376 | 2.2:-71479541 | MS.gene071918:CDS |
TGTCCCGTGTTGTCGTCAAA+AGG | 0.540895 | 2.2:+71476259 | None:intergenic |
CATGGAGTGCAGATGATTGT+GGG | 0.542245 | 2.2:-71475862 | MS.gene071918:CDS |
AGTAATGGACAAATACTATG+TGG | 0.543475 | 2.2:+71478734 | None:intergenic |
AGGGCCAAATGTGTTAGATA+AGG | 0.545492 | 2.2:-71474718 | MS.gene071918:CDS |
TTGAATATGCAATCCTCACC+TGG | 0.546965 | 2.2:-71475890 | MS.gene071918:CDS |
CCCTTTGTGCCCATTGCTAG+AGG | 0.547351 | 2.2:+71473730 | None:intergenic |
AGCGTAATATAATCTTCTCC+AGG | 0.547811 | 2.2:+71472131 | None:intergenic |
GCCTCTAGCAATGGGCACAA+AGG | 0.550083 | 2.2:-71473731 | MS.gene071918:CDS |
ACAGTCATCAGTTTCTGGAA+TGG | 0.550394 | 2.2:-71477202 | MS.gene071918:CDS |
AGCTGATCCTGAGACAGAGA+TGG | 0.551349 | 2.2:+71475812 | None:intergenic |
GATTACGATTATTTAAAGGA+AGG | 0.553990 | 2.2:-71472019 | MS.gene071918:CDS |
TAAGCTTATTTCACTGAGAG+AGG | 0.554008 | 2.2:-71474880 | MS.gene071918:CDS |
TAAAACTGTCATCTGGTCTG+TGG | 0.556291 | 2.2:-71472158 | MS.gene071918:CDS |
TTTCTCTGTATCGCCCTCAA+AGG | 0.557059 | 2.2:+71474917 | None:intergenic |
CAATTATCCTAACCTGCCAC+AGG | 0.557119 | 2.2:+71474566 | None:intergenic |
GGTCATATCAGATTCTCAAA+AGG | 0.557484 | 2.2:-71477562 | MS.gene071918:CDS |
GGCCCATGTAAGAGGTCACC+AGG | 0.559386 | 2.2:-71472194 | MS.gene071918:CDS |
AGGCACATTACTATAAGTTG+TGG | 0.559779 | 2.2:+71477515 | None:intergenic |
ATAGCTGCTAGTTGGGCTCA+TGG | 0.559820 | 2.2:+71477476 | None:intergenic |
GGCGTATCATTATAGACCAC+AGG | 0.559963 | 2.2:+71473572 | None:intergenic |
ACAAAACTATTTGGAAGAGA+AGG | 0.562047 | 2.2:-71476089 | MS.gene071918:CDS |
TCTGCAGCTGTTCTGCCTGA+AGG | 0.562892 | 2.2:+71473758 | None:intergenic |
GAAGCAGTTAACTCAGGATG+AGG | 0.563159 | 2.2:-71473450 | MS.gene071918:CDS |
CTGAGACAGAGATGGGCTCA+GGG | 0.564744 | 2.2:+71475820 | None:intergenic |
GGCACATTACTATAAGTTGT+GGG | 0.564844 | 2.2:+71477516 | None:intergenic |
CGCAAGTCAGGACATGGAGA+TGG | 0.567106 | 2.2:-71473371 | MS.gene071918:CDS |
TTGAGGGCGATACAGAGAAA+AGG | 0.567585 | 2.2:-71474914 | MS.gene071918:CDS |
GTGTAGATCATCCACTGTGA+GGG | 0.568240 | 2.2:+71473661 | None:intergenic |
GGAAGTTGAGGTTCCTGCTG+AGG | 0.568560 | 2.2:-71475177 | MS.gene071918:CDS |
AGCTGTTCTTGATTATGACT+GGG | 0.568754 | 2.2:-71474670 | MS.gene071918:CDS |
AATGTATCCCTGTTAAAAGG+TGG | 0.569203 | 2.2:+71477171 | None:intergenic |
GTTGGCTTCCTTGTATCCAA+GGG | 0.569980 | 2.2:-71473821 | MS.gene071918:CDS |
TCAAATCGTCCACCTCTCCA+AGG | 0.570020 | 2.2:+71475909 | None:intergenic |
CAAATGTGTTAGATAAGGAC+GGG | 0.570136 | 2.2:-71474713 | MS.gene071918:CDS |
CTTCACAAGGTAACTGAGAG+TGG | 0.571045 | 2.2:-71474744 | MS.gene071918:CDS |
TACAATTTGAAGCCCAACAT+CGG | 0.573008 | 2.2:-71480608 | MS.gene071918:CDS |
CATTGATGGCCAGGCAACAT+GGG | 0.573012 | 2.2:-71477127 | MS.gene071918:CDS |
ATGTATCCCTGTTAAAAGGT+GGG | 0.573798 | 2.2:+71477172 | None:intergenic |
CATGGACTTCACCCTAGAAA+GGG | 0.574858 | 2.2:+71471964 | None:intergenic |
TCATGGAGTGCAGATGATTG+TGG | 0.576463 | 2.2:-71475863 | MS.gene071918:CDS |
GGTTCAGTATCCAGAGGCAC+GGG | 0.577927 | 2.2:-71471942 | MS.gene071918:CDS |
ATTATGGAACTGGTTTACTA+GGG | 0.578025 | 2.2:-71476192 | MS.gene071918:CDS |
TAAATGGGCTTATGCTGAGT+CGG | 0.579479 | 2.2:-71475765 | MS.gene071918:CDS |
TTGTTCAGAGAGCGGACAGT+TGG | 0.579892 | 2.2:-71473839 | MS.gene071918:intron |
CCATGAAAACTAAACAAGAC+AGG | 0.581522 | 2.2:+71476136 | None:intergenic |
GGGACCCGCCCAACCTTGTG+AGG | 0.581655 | 2.2:+71475119 | None:intergenic |
ACCTGCCAATTTGATTGGAG+AGG | 0.583640 | 2.2:+71476937 | None:intergenic |
AGTTAACTGCTTCCTCTGAA+AGG | 0.583733 | 2.2:+71473460 | None:intergenic |
CAAATCGTCCACCTCTCCAA+GGG | 0.584480 | 2.2:+71475910 | None:intergenic |
GCTACTTCATTTGCGGCTGG+AGG | 0.584521 | 2.2:-71474979 | MS.gene071918:CDS |
AGAATTTCACAAATTTCTGC+CGG | 0.585579 | 2.2:+71480576 | None:intergenic |
AATGTGCGTCTCACAGGTAA+GGG | 0.585778 | 2.2:+71475992 | None:intergenic |
GGAAGGTTGATAGCTTCAAT+CGG | 0.587880 | 2.2:-71475946 | MS.gene071918:CDS |
ATCAACTTCCGTGATGTGAA+TGG | 0.588535 | 2.2:-71474615 | MS.gene071918:CDS |
TGGTTCAGTATCCAGAGGCA+CGG | 0.589109 | 2.2:-71471943 | MS.gene071918:CDS |
CCAAATGTGTTAGATAAGGA+CGG | 0.589381 | 2.2:-71474714 | MS.gene071918:CDS |
ATGGAATCTGTACTTAGAGA+AGG | 0.591073 | 2.2:+71477495 | None:intergenic |
TATATTACGCTGGAGACGCA+AGG | 0.591215 | 2.2:-71472119 | MS.gene071918:CDS |
TCAGAGGAAGCAGTTAACTC+AGG | 0.592126 | 2.2:-71473456 | MS.gene071918:CDS |
GTACTCATGGCTTCTTCACA+AGG | 0.592724 | 2.2:-71474757 | MS.gene071918:CDS |
AAGGCACGCAAGTCAGGACA+TGG | 0.593229 | 2.2:-71473377 | MS.gene071918:CDS |
ACCCGCCCAACCTTGTGAGG+AGG | 0.594990 | 2.2:+71475122 | None:intergenic |
GAAGTAAAAGATACAAGAGA+AGG | 0.595220 | 2.2:+71477066 | None:intergenic |
CGCAAGGGCAGTGGTCTACG+TGG | 0.596057 | 2.2:-71472103 | MS.gene071918:CDS |
GAGACGCACATTATTGGATA+GGG | 0.598920 | 2.2:-71475981 | MS.gene071918:CDS |
GCTGATCCTGAGACAGAGAT+GGG | 0.599008 | 2.2:+71475813 | None:intergenic |
TGGAGAAGATTATATTACGC+TGG | 0.599494 | 2.2:-71472129 | MS.gene071918:CDS |
TGAAGAGACAGTTGATGATG+TGG | 0.599942 | 2.2:-71471732 | MS.gene071918:CDS |
TTGGACGGCCTTACATTGGG+CGG | 0.600246 | 2.2:-71474592 | MS.gene071918:CDS |
GGCACGGGCTCAATACCGGC+GGG | 0.603077 | 2.2:-71471927 | MS.gene071918:CDS |
TCACACCAGAACCTCATACA+AGG | 0.603894 | 2.2:-71480530 | MS.gene071918:CDS |
AGTAACAAGTCAAATATTGG+AGG | 0.604680 | 2.2:-71477603 | MS.gene071918:CDS |
GTGTTAGATAAGGACGGGCA+GGG | 0.607032 | 2.2:-71474708 | MS.gene071918:CDS |
ATGTTTGACAGTGAACCAGA+TGG | 0.611986 | 2.2:+71477039 | None:intergenic |
CAACAACATTTAGCACCCGC+CGG | 0.612322 | 2.2:+71471912 | None:intergenic |
CAACTGGTCCTGTATGTTTG+GGG | 0.614877 | 2.2:-71475198 | MS.gene071918:CDS |
AGGTTGATAGCTTCAATCGG+TGG | 0.616053 | 2.2:-71475943 | MS.gene071918:CDS |
TCAGAATGCAGTCCTTTCAG+AGG | 0.617424 | 2.2:-71473472 | MS.gene071918:CDS |
TTACACTGCTACTATGCACA+TGG | 0.621437 | 2.2:-71479259 | MS.gene071918:CDS |
TAGACTTAAGGTCATCTCGC+GGG | 0.623141 | 2.2:+71476056 | None:intergenic |
ACTTCCGTGATGTGAATGGT+TGG | 0.624440 | 2.2:-71474611 | MS.gene071918:CDS |
GTAATGGACAAATACTATGT+GGG | 0.627618 | 2.2:+71478735 | None:intergenic |
AATTTGGTTTGTTAGATCAG+CGG | 0.629095 | 2.2:-71473421 | MS.gene071918:CDS |
AATTTGAAGCCCAACATCGG+TGG | 0.629491 | 2.2:-71480605 | MS.gene071918:CDS |
TGACAGTGAACCAGATGGGA+TGG | 0.634895 | 2.2:+71477044 | None:intergenic |
CCGTCCAACCATTCACATCA+CGG | 0.635146 | 2.2:+71474607 | None:intergenic |
ATATTACGCTGGAGACGCAA+GGG | 0.638430 | 2.2:-71472118 | MS.gene071918:CDS |
CCGTGATGTGAATGGTTGGA+CGG | 0.639602 | 2.2:-71474607 | MS.gene071918:CDS |
CAGCTATACATCTTTACGTG+AGG | 0.645356 | 2.2:-71477460 | MS.gene071918:CDS |
TGCCTCTGGATACTGAACCA+TGG | 0.651788 | 2.2:+71471946 | None:intergenic |
AGAACGAACTGCAACACCTG+TGG | 0.652141 | 2.2:-71473588 | MS.gene071918:CDS |
AGGCACGGGCTCAATACCGG+CGG | 0.652244 | 2.2:-71471928 | MS.gene071918:CDS |
TCTGCACTCCATGAAATACC+AGG | 0.652778 | 2.2:+71475872 | None:intergenic |
ACTCCATGAAATACCAGGTG+AGG | 0.654729 | 2.2:+71475877 | None:intergenic |
GATTACTAAAGCCCTTGGAG+AGG | 0.655490 | 2.2:-71475921 | MS.gene071918:CDS |
GTCCATGGTTCAGTATCCAG+AGG | 0.662585 | 2.2:-71471948 | MS.gene071918:CDS |
TTAGACTTAAGGTCATCTCG+CGG | 0.665673 | 2.2:+71476055 | None:intergenic |
TGTTTGACAGTGAACCAGAT+GGG | 0.678859 | 2.2:+71477040 | None:intergenic |
TGTGTAGATCATCCACTGTG+AGG | 0.678956 | 2.2:+71473660 | None:intergenic |
GTGGCCTTACTATTGGAGCA+GGG | 0.681723 | 2.2:-71476969 | MS.gene071918:CDS |
AGGATCAGCATGCAACTCAG+AGG | 0.683885 | 2.2:+71477086 | None:intergenic |
GTTGTGGGAATGCCAGACGA+CGG | 0.686833 | 2.2:+71477531 | None:intergenic |
AGAGACAGTTGATGATGTGG+AGG | 0.690553 | 2.2:-71471729 | MS.gene071918:CDS |
GATGGATATATCACGACACA+AGG | 0.693721 | 2.2:-71474820 | MS.gene071918:CDS |
GCAAGGGCAGTGGTCTACGT+GGG | 0.695961 | 2.2:-71472102 | MS.gene071918:CDS |
CCACTGTGAGGGATTCAAGG+TGG | 0.711850 | 2.2:+71473672 | None:intergenic |
AGGAAACACTGATAGCAATG+AGG | 0.728312 | 2.2:-71477583 | MS.gene071918:CDS |
TTATGCTGAGTCGGACACTG+AGG | 0.731593 | 2.2:-71475756 | MS.gene071918:intron |
ACAGTGGATGATCTACACAA+AGG | 0.736335 | 2.2:-71473656 | MS.gene071918:CDS |
AGACAGAGATGGGCTCAGGG+AGG | 0.741162 | 2.2:+71475823 | None:intergenic |
CCACCTTGAATCCCTCACAG+TGG | 0.741963 | 2.2:-71473672 | MS.gene071918:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 71471667 | 71480642 | 71471667 | ID=MS.gene071918 |
chr2.2 | mRNA | 71471667 | 71480642 | 71471667 | ID=MS.gene071918.t1;Parent=MS.gene071918 |
chr2.2 | exon | 71480523 | 71480642 | 71480523 | ID=MS.gene071918.t1.exon1;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71480523 | 71480642 | 71480523 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71479481 | 71479596 | 71479481 | ID=MS.gene071918.t1.exon2;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71479481 | 71479596 | 71479481 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71479211 | 71479299 | 71479211 | ID=MS.gene071918.t1.exon3;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71479211 | 71479299 | 71479211 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71478723 | 71478762 | 71478723 | ID=MS.gene071918.t1.exon4;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71478723 | 71478762 | 71478723 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71477448 | 71477625 | 71477448 | ID=MS.gene071918.t1.exon5;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71477448 | 71477625 | 71477448 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71476939 | 71477234 | 71476939 | ID=MS.gene071918.t1.exon6;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71476939 | 71477234 | 71476939 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71475757 | 71476284 | 71475757 | ID=MS.gene071918.t1.exon7;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71475757 | 71476284 | 71475757 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71474579 | 71475270 | 71474579 | ID=MS.gene071918.t1.exon8;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71474579 | 71475270 | 71474579 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71473268 | 71473853 | 71473268 | ID=MS.gene071918.t1.exon9;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71473268 | 71473853 | 71473268 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71471892 | 71472215 | 71471892 | ID=MS.gene071918.t1.exon10;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71471892 | 71472215 | 71471892 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
chr2.2 | exon | 71471667 | 71471780 | 71471667 | ID=MS.gene071918.t1.exon11;Parent=MS.gene071918.t1 |
chr2.2 | CDS | 71471667 | 71471780 | 71471667 | ID=cds.MS.gene071918.t1;Parent=MS.gene071918.t1 |
Gene Sequence |
Protein sequence |