AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072379.t1 MTR_7g092770 99.613 775 3 0 1 775 1 775 0.0 1606
MS.gene072379.t1 MTR_0305s0020 93.428 776 48 3 1 775 1 774 0.0 1498
MS.gene072379.t1 MTR_4g066150 81.982 777 131 7 1 775 1 770 0.0 1315
MS.gene072379.t1 MTR_3g027150 68.734 790 225 7 7 775 34 822 0.0 1165
MS.gene072379.t1 MTR_4g023460 69.289 788 220 8 7 775 358 1142 0.0 1155
MS.gene072379.t1 MTR_5g010390 69.063 779 228 6 6 775 233 1007 0.0 1151
MS.gene072379.t1 MTR_0291s0010 67.215 790 241 6 3 775 9 797 0.0 1145
MS.gene072379.t1 MTR_4g033215 65.290 775 256 8 8 775 276 1044 0.0 1063
MS.gene072379.t1 MTR_8g031270 60.307 781 291 8 6 775 231 1003 0.0 997
MS.gene072379.t1 MTR_7g076900 59.696 789 287 10 8 775 235 1013 0.0 972
MS.gene072379.t1 MTR_4g057675 58.270 786 304 10 2 775 10 783 0.0 890
MS.gene072379.t1 MTR_4g071870 56.234 786 286 12 2 775 10 749 0.0 856
MS.gene072379.t1 MTR_4g107850 52.964 776 319 14 19 775 290 1038 0.0 808
MS.gene072379.t1 MTR_6g027540 51.175 766 325 13 30 775 273 1009 0.0 775
MS.gene072379.t1 MTR_6g028050 48.105 765 357 13 29 775 284 1026 0.0 738
MS.gene072379.t1 MTR_1g015540 48.528 781 369 13 12 775 9 773 0.0 696
MS.gene072379.t1 MTR_5g096980 42.125 781 415 13 8 775 7 763 0.0 603
MS.gene072379.t1 MTR_4g023250 66.923 130 41 1 645 774 1 128 3.76e-54 183
MS.gene072379.t1 MTR_4g023230 49.180 122 47 1 562 683 49 155 6.30e-32 122
MS.gene072379.t1 MTR_4g023390 50.000 104 30 1 648 751 16 97 2.32e-25 101
MS.gene072379.t1 MTR_7g052280 67.089 79 2 2 247 325 1 55 9.12e-25 98.2
MS.gene072379.t1 MTR_4g023240 66.667 60 20 0 496 555 10 69 9.51e-21 87.0
MS.gene072379.t1 MTR_2g027360 31.783 129 75 4 40 161 3 125 5.12e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072379.t1 AT3G57880 90.206 776 72 3 1 775 1 773 0.0 1473
MS.gene072379.t1 AT3G57880 90.206 776 72 3 1 775 1 773 0.0 1473
MS.gene072379.t1 AT3G57880 90.206 776 72 3 1 775 1 773 0.0 1473
MS.gene072379.t1 AT3G57880 90.206 776 72 3 1 775 1 773 0.0 1473
MS.gene072379.t1 AT1G51570 88.288 777 88 3 1 775 1 776 0.0 1437
MS.gene072379.t1 AT5G12970 81.105 778 135 7 1 775 1 769 0.0 1305
MS.gene072379.t1 AT5G06850 67.090 787 238 7 7 775 11 794 0.0 1150
MS.gene072379.t1 AT4G11610 68.205 780 232 7 6 775 238 1011 0.0 1140
MS.gene072379.t1 AT4G11610 68.205 780 232 7 6 775 234 1007 0.0 1140
MS.gene072379.t1 AT4G11610 68.205 780 232 7 6 775 101 874 0.0 1138
MS.gene072379.t1 AT5G48060 66.624 779 249 7 7 775 259 1036 0.0 1118
MS.gene072379.t1 AT1G22610 65.613 791 250 9 1 775 245 1029 0.0 1080
MS.gene072379.t1 AT4G00700 59.515 783 301 6 6 775 227 1006 0.0 978
MS.gene072379.t1 AT4G00700 59.515 783 301 6 6 775 227 1006 0.0 978
MS.gene072379.t1 AT3G61300 58.922 779 290 13 4 775 217 972 0.0 945
MS.gene072379.t1 AT4G20080 57.827 773 307 10 9 775 15 774 0.0 927
MS.gene072379.t1 AT1G04150 57.828 792 290 13 8 775 241 1012 0.0 925
MS.gene072379.t1 AT1G74720 52.441 799 341 13 2 775 297 1081 0.0 823
MS.gene072379.t1 AT3G03680 52.529 771 313 18 31 775 274 1017 0.0 780
MS.gene072379.t1 AT5G17980 49.141 757 354 12 29 775 314 1049 0.0 756
MS.gene072379.t1 AT3G61720 38.923 817 424 24 7 775 6 795 1.43e-168 506
MS.gene072379.t1 AT5G03435 40.874 778 402 24 7 769 6 740 1.49e-167 502
MS.gene072379.t1 AT5G03435 43.426 578 291 16 7 575 6 556 2.49e-141 427
MS.gene072379.t1 AT5G44760 51.372 401 146 11 8 400 5 364 9.11e-123 377
MS.gene072379.t1 AT5G44760 23.664 524 283 14 179 677 20 451 6.67e-20 94.4
MS.gene072379.t1 AT1G03370 27.459 244 160 8 40 280 3 232 5.83e-14 76.3
MS.gene072379.t1 AT1G03370 27.459 244 160 8 40 280 3 232 8.25e-14 76.3

Find 215 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTATGTGAAGGCTATTT+TGG 0.149556 7.4:+16032780 MS.gene072379:CDS
TGAAAAGCATGTTGTTATTA+TGG 0.199124 7.4:+16033032 MS.gene072379:CDS
CTGTGCCACTCAATTTCTTC+AGG 0.239203 7.4:+16034387 MS.gene072379:CDS
TCCAACTGGGGTGAAGAAAA+TGG 0.246387 7.4:+16033551 MS.gene072379:CDS
TCGAGCTGGCTGACTGTTAA+TGG 0.283050 7.4:-16033672 None:intergenic
AAATGCAGTATCTTTATGTT+AGG 0.287072 7.4:+16032221 MS.gene072379:CDS
CTTCTAGTTCTTCATCCAAC+TGG 0.290568 7.4:+16033537 MS.gene072379:CDS
CTCCTAAGCTTTGGTATTTG+AGG 0.293908 7.4:+16032701 MS.gene072379:CDS
CCTAGCAGTTCCTCTTTGTT+AGG 0.294279 7.4:-16032934 None:intergenic
ACAAACTGTTGTCGGGGATT+TGG 0.302220 7.4:+16034184 MS.gene072379:CDS
AGAAGGTGGTTATCATGTTT+TGG 0.311177 7.4:+16033113 MS.gene072379:CDS
TTGGAGTTTGGTACTATAGA+TGG 0.323138 7.4:+16034003 MS.gene072379:CDS
ATGCCGATGAAATCAAATAA+TGG 0.326327 7.4:+16033240 MS.gene072379:CDS
GGGAGCTGATGCTGGCTGTT+TGG 0.327899 7.4:+16032572 MS.gene072379:CDS
TCTTTCAACAGAAAATCTTC+TGG 0.345233 7.4:-16032130 None:intergenic
AACTCTTCATCTAGTTCGTC+AGG 0.348361 7.4:-16034083 None:intergenic
TGCGGCGCCAGAGGACTATC+AGG 0.355118 7.4:-16032508 None:intergenic
GTGGGGATATTGAATGCTTC+GGG 0.361234 7.4:+16033213 MS.gene072379:CDS
CTGATGCTCTTGCAAATATT+AGG 0.364946 7.4:+16032662 MS.gene072379:CDS
ATTGTTGGTAAGATAAGTTC+AGG 0.373990 7.4:-16033960 None:intergenic
TTTGAATCTCTTTGTCCTCC+AGG 0.374663 7.4:-16033447 None:intergenic
CAAGTTGTGGCTCTTCTCAC+TGG 0.375373 7.4:+16034320 MS.gene072379:CDS
TCCACAGCTGTTTCGCCGTT+GGG 0.377277 7.4:-16033167 None:intergenic
GCTTACTGTGTAGCAAAGTA+TGG 0.377309 7.4:+16033279 MS.gene072379:CDS
TGAATCAGAACTGTTGTGAT+AGG 0.382320 7.4:-16033909 None:intergenic
TCCTAAGCTTTGGTATTTGA+GGG 0.385923 7.4:+16032702 MS.gene072379:CDS
GACTGCAGTCTTTGCTGAGC+TGG 0.390838 7.4:+16034222 MS.gene072379:CDS
GAAGGATCGGATTCAGGCTT+CGG 0.396181 7.4:+16032390 MS.gene072379:CDS
GCTGATGCTGGCTGTTTGGA+TGG 0.398155 7.4:+16032576 MS.gene072379:CDS
CACCTTGGTGGTAAGGTCTC+TGG 0.400603 7.4:+16032163 MS.gene072379:CDS
GAAGTCGAGTATTGGAGTTT+TGG 0.405068 7.4:+16033188 MS.gene072379:CDS
CCGTGCACTGTCATTACAAT+TGG 0.408435 7.4:+16033384 MS.gene072379:CDS
AGTGGGGATATTGAATGCTT+CGG 0.413329 7.4:+16033212 MS.gene072379:CDS
TCGGATGCGGCGACGGTTAG+TGG 0.413525 7.4:+16032637 MS.gene072379:CDS
GTCTGATAAGGGAAGATTCC+CGG 0.415295 7.4:+16032756 MS.gene072379:CDS
GAGAAATTCAACTGGCTGTA+AGG 0.416142 7.4:+16033574 MS.gene072379:CDS
TTCCACAGCTGTTTCGCCGT+TGG 0.421819 7.4:-16033168 None:intergenic
GACTAATCCTGAATGGAATC+AGG 0.424124 7.4:+16032354 MS.gene072379:CDS
TTCTAGTTCTTCATCCAACT+GGG 0.424420 7.4:+16033538 MS.gene072379:CDS
CATATGAGGGTCTGTCTAGA+AGG 0.427742 7.4:+16033096 MS.gene072379:CDS
TGCCGATGAAATCAAATAAT+GGG 0.427885 7.4:+16033241 MS.gene072379:CDS
CTACCTGCGAAAGATGTTAC+TGG 0.428150 7.4:+16032262 MS.gene072379:CDS
TCCATGTGAGGTGGGTGCCT+TGG 0.428924 7.4:-16034029 None:intergenic
ACAAACCTGTGAACACTAGA+TGG 0.430517 7.4:+16033001 MS.gene072379:CDS
AGAAGAGCCACAACTTGAAA+TGG 0.431378 7.4:-16034314 None:intergenic
GAATGAGGATTTGATGTTTG+TGG 0.433783 7.4:+16032858 MS.gene072379:CDS
AGGAAGAGTGATAAGGTGAG+AGG 0.436722 7.4:+16032550 MS.gene072379:CDS
TGTTATTCCCTTACAGATGA+TGG 0.437429 7.4:+16032963 MS.gene072379:CDS
CTTACCACCAAGGTGGGGTT+TGG 0.439462 7.4:-16032155 None:intergenic
AATGCAGTATCTTTATGTTA+GGG 0.439908 7.4:+16032222 MS.gene072379:CDS
GGACTTGCAACCGTCTGATA+AGG 0.440825 7.4:+16032744 MS.gene072379:CDS
CATTTGCTCAACAAGGTCAT+AGG 0.445253 7.4:-16032203 None:intergenic
CTATCAGGAGGAACCCTCTT+CGG 0.447291 7.4:-16032493 None:intergenic
GGTTTGACCAAATCTGCAAT+TGG 0.447777 7.4:+16033880 MS.gene072379:CDS
GGAGGTAGTGGAATATATGC+TGG 0.448097 7.4:+16033764 MS.gene072379:CDS
CCAAGCTTGACTTCAACATA+AGG 0.450353 7.4:-16032295 None:intergenic
CTCCCATTATTTGATTTCAT+CGG 0.451057 7.4:-16033243 None:intergenic
TTGCAAGCAGGATTCATATG+AGG 0.451536 7.4:+16033082 MS.gene072379:CDS
TGTGACTCCATTTCAAGTTG+TGG 0.455642 7.4:+16034307 MS.gene072379:CDS
TGCTGAGCCACCACTGAGAA+AGG 0.458401 7.4:+16033743 MS.gene072379:CDS
TGTATCTATCTCCTAAGCTT+TGG 0.469644 7.4:+16032692 MS.gene072379:CDS
CCAACTGGGGTGAAGAAAAT+GGG 0.470245 7.4:+16033552 MS.gene072379:CDS
GTAGGATACAAACTGTTGTC+GGG 0.474674 7.4:+16034177 MS.gene072379:CDS
TCTCCGGTCCATCATCTGTA+AGG 0.477605 7.4:-16032971 None:intergenic
GGAGGATAGGAAGAGTGATA+AGG 0.478220 7.4:+16032543 MS.gene072379:CDS
CAGGTTTGTGATCGAGTCTC+CGG 0.480206 7.4:-16032987 None:intergenic
AAGCATGTTGTTATTATGGA+AGG 0.483057 7.4:+16033036 MS.gene072379:CDS
TGCCACTCAATTTCTTCAGG+AGG 0.483882 7.4:+16034390 MS.gene072379:CDS
GGATGAATGTAATGCATCTT+GGG 0.484486 7.4:-16033651 None:intergenic
AAAATCAGTGGCTCCTCAAA+CGG 0.484536 7.4:-16032889 None:intergenic
CAGCTGTGGAAGTCGAGTAT+TGG 0.484621 7.4:+16033180 MS.gene072379:CDS
AAGAGGTAAAGGAAAATTGT+TGG 0.485200 7.4:-16033975 None:intergenic
GAAAATGGGAGAAATTCAAC+TGG 0.487642 7.4:+16033566 MS.gene072379:CDS
GGAAGAGTGATAAGGTGAGA+GGG 0.488372 7.4:+16032551 MS.gene072379:CDS
GGTGAGAGGGGAGCTGATGC+TGG 0.489453 7.4:+16032564 MS.gene072379:CDS
CAAACCCCACCTTGGTGGTA+AGG 0.491282 7.4:+16032156 MS.gene072379:CDS
GCATCCGAGTGCCACGCCTC+AGG 0.494760 7.4:-16032622 None:intergenic
GACTTGCAACCGTCTGATAA+GGG 0.495169 7.4:+16032745 MS.gene072379:CDS
TGGATGAATGTAATGCATCT+TGG 0.496196 7.4:-16033652 None:intergenic
GTCGGGGATTTGGCGACTCA+AGG 0.497341 7.4:+16034194 MS.gene072379:CDS
ATCTTTCGCAGGTAGCTCCT+TGG 0.498641 7.4:-16032254 None:intergenic
TAGCAAAGTATGGACAGAAA+TGG 0.499639 7.4:+16033289 MS.gene072379:CDS
GGCGCCGCAGTGGTATAGAT+TGG 0.501455 7.4:+16032522 MS.gene072379:CDS
AACAGAAAATCTTCTGGAGG+AGG 0.502805 7.4:-16032124 None:intergenic
AGAAGAAGACTAATCCTGAA+TGG 0.504293 7.4:+16032347 MS.gene072379:CDS
AAGAAATTGAGTGGCACAGA+AGG 0.506210 7.4:-16034383 None:intergenic
AGCAAAGTATGGACAGAAAT+GGG 0.506383 7.4:+16033290 MS.gene072379:CDS
TGAGGCGTGGCACTCGGATG+CGG 0.507184 7.4:+16032624 MS.gene072379:CDS
TATGGAAGGGGACAAGAAGA+AGG 0.509014 7.4:+16033050 MS.gene072379:CDS
ATAGCCTTCACATAAACCTC+CGG 0.509665 7.4:-16032775 None:intergenic
GAAGAGTGATAAGGTGAGAG+GGG 0.511445 7.4:+16032552 MS.gene072379:CDS
CAAGCTTGACTTCAACATAA+GGG 0.511908 7.4:-16032294 None:intergenic
CTCAGCACGGCTAAGTCTCA+TGG 0.512975 7.4:-16033727 None:intergenic
GTTTCCTGAGGCGTGGCACT+CGG 0.515073 7.4:+16032618 MS.gene072379:CDS
GCATGTTGTTATTATGGAAG+GGG 0.516659 7.4:+16033038 MS.gene072379:CDS
ACCCTCAAATACCAAAGCTT+AGG 0.516986 7.4:-16032703 None:intergenic
GGTTCCTCCTGATAGTCCTC+TGG 0.518825 7.4:+16032501 MS.gene072379:CDS
TAATGCATCTTGGGCAGCAA+TGG 0.519377 7.4:-16033642 None:intergenic
GGTGGAATGAGCAGTATACT+TGG 0.519885 7.4:+16033349 MS.gene072379:CDS
CGGTGCAAAGCTATCGATGA+TGG 0.520044 7.4:-16033325 None:intergenic
CTGATGCTGGCTGTTTGGAT+GGG 0.522554 7.4:+16032577 MS.gene072379:CDS
AGAACTGATTGCATGCTTTG+AGG 0.524185 7.4:+16034422 MS.gene072379:CDS
TGTGGCTGCAGAACCGTTTG+AGG 0.525708 7.4:+16032876 MS.gene072379:CDS
TTGAACCATCTAGTGTTCAC+AGG 0.525843 7.4:-16033006 None:intergenic
ATGAAATCAAATAATGGGAG+GGG 0.526239 7.4:+16033246 MS.gene072379:CDS
CCTTATGTTGAAGTCAAGCT+TGG 0.526765 7.4:+16032295 MS.gene072379:CDS
TTGAGTGGATTAATTGCTGT+TGG 0.528890 7.4:+16033852 MS.gene072379:CDS
GGAAGCTTGTGACGAAACCT+TGG 0.530590 7.4:-16034362 None:intergenic
GCCAAGGCACCCACCTCACA+TGG 0.530781 7.4:+16034028 MS.gene072379:CDS
GATTCAGGCTTCGGTTCTTG+AGG 0.530948 7.4:+16032399 MS.gene072379:CDS
GGTTAATGTGATCGAGGCAC+AGG 0.532299 7.4:+16032723 MS.gene072379:CDS
TTCCCTTACAGATGATGGAC+CGG 0.532408 7.4:+16032968 MS.gene072379:CDS
AGCATGCAATCAGTTCTTGC+AGG 0.532832 7.4:-16034416 None:intergenic
TCTTTATGTTAGGGTTGTGA+AGG 0.534597 7.4:+16032231 MS.gene072379:CDS
GAATCAGAACTGTTGTGATA+GGG 0.535162 7.4:-16033908 None:intergenic
ATCTAGTTCGTCAGGGTGTG+CGG 0.535646 7.4:-16034075 None:intergenic
CACCATGGTGGTGATAAGCC+TGG 0.536704 7.4:+16033429 MS.gene072379:CDS
AGGAAATCAAGTTTGCAAGC+AGG 0.537088 7.4:+16033070 MS.gene072379:CDS
ACTACCTCCTTTCTCAGTGG+TGG 0.538932 7.4:-16033750 None:intergenic
GGTAGGATACAAACTGTTGT+CGG 0.541500 7.4:+16034176 MS.gene072379:CDS
ACCACTGAGAAAGGAGGTAG+TGG 0.541617 7.4:+16033752 MS.gene072379:CDS
AGCATGTTGTTATTATGGAA+GGG 0.541928 7.4:+16033037 MS.gene072379:CDS
GGACTAGAATCTCTCAGAGC+AGG 0.546735 7.4:+16032818 MS.gene072379:CDS
GATGCCTCAGACTGTCGAGC+TGG 0.550117 7.4:-16033686 None:intergenic
TCTCAATGAGATTCCGAAGA+GGG 0.552069 7.4:+16032480 MS.gene072379:CDS
AGTGGTATAGATTGGAGGAT+AGG 0.552452 7.4:+16032530 MS.gene072379:CDS
TAGCCTTCACATAAACCTCC+GGG 0.554227 7.4:-16032774 None:intergenic
TGCAAGCAGGATTCATATGA+GGG 0.556261 7.4:+16033083 MS.gene072379:CDS
CGCATCCTCACGATGTCAGA+AGG 0.560574 7.4:-16034128 None:intergenic
AGACGTGTGTCCATGTGAGG+TGG 0.561408 7.4:-16034038 None:intergenic
CTGAGAGATTCTAGTCCTCA+AGG 0.563761 7.4:-16032812 None:intergenic
GAGACCAAACCCCACCTTGG+TGG 0.564488 7.4:+16032151 MS.gene072379:CDS
GTGGCACTCGGATGCGGCGA+CGG 0.568143 7.4:+16032630 MS.gene072379:CDS
GATTAATTGCTGTTGGAAAG+TGG 0.569868 7.4:+16033859 MS.gene072379:CDS
CAGTCTCGAGTGTGGAAAGA+CGG 0.571907 7.4:-16033488 None:intergenic
CAGGGTGTGCGGAATCAGCA+TGG 0.574507 7.4:-16034064 None:intergenic
GACAACAGTTTGTATCCTAC+CGG 0.574843 7.4:-16034174 None:intergenic
TGTTAGGGTTGTGAAGGCCA+AGG 0.575221 7.4:+16032237 MS.gene072379:CDS
ATGTCAGAAGGTCTTGTGGT+TGG 0.576119 7.4:-16034116 None:intergenic
ATAGTCCTCTGGCGCCGCAG+TGG 0.576174 7.4:+16032512 MS.gene072379:CDS
ATGAAGAACTAGAAGCGGAT+AGG 0.578613 7.4:-16033529 None:intergenic
TTCAACAGAAAATCTTCTGG+AGG 0.580397 7.4:-16032127 None:intergenic
CTATACCACTGCGGCGCCAG+AGG 0.580494 7.4:-16032517 None:intergenic
CCTAACAAAGAGGAACTGCT+AGG 0.581474 7.4:+16032934 MS.gene072379:CDS
TTCTTCGCATACTCCACATG+TGG 0.584507 7.4:-16033797 None:intergenic
AGAGACCTTACCACCAAGGT+GGG 0.585249 7.4:-16032161 None:intergenic
GGGAATCTTCCCTTATCAGA+CGG 0.587236 7.4:-16032754 None:intergenic
TATCAATCCGATGTGGAATG+AGG 0.587518 7.4:+16032843 MS.gene072379:CDS
CACGATGTCAGAAGGTCTTG+TGG 0.588138 7.4:-16034120 None:intergenic
TTGTTGGTAAGATAAGTTCA+GGG 0.591225 7.4:-16033959 None:intergenic
GCCGCAGTGGTATAGATTGG+AGG 0.592270 7.4:+16032525 MS.gene072379:CDS
GCCCAACGGCGAAACAGCTG+TGG 0.595415 7.4:+16033166 MS.gene072379:CDS
GTCAAGCTTGGTAATTACAA+AGG 0.597001 7.4:+16032307 MS.gene072379:CDS
TGAAATCAAATAATGGGAGG+GGG 0.602820 7.4:+16033247 MS.gene072379:CDS
ATTCCCGGAGGTTTATGTGA+AGG 0.604425 7.4:+16032771 MS.gene072379:CDS
TCCACTACCTCCTTTCTCAG+TGG 0.604548 7.4:-16033753 None:intergenic
CTTCCAGTAACATCTTTCGC+AGG 0.611302 7.4:-16032265 None:intergenic
AGCTGATGAAGCGTTTCCTG+AGG 0.615613 7.4:+16032606 MS.gene072379:CDS
CAGTAGTGATCTTCGCCCAA+CGG 0.615629 7.4:+16033152 MS.gene072379:CDS
AGGGTGTGCGGAATCAGCAT+GGG 0.615690 7.4:-16034063 None:intergenic
CCAATTGTAATGACAGTGCA+CGG 0.615694 7.4:-16033384 None:intergenic
TCAGCCAGCTCGACAGTCTG+AGG 0.617012 7.4:+16033682 MS.gene072379:CDS
ATGAAGCGTTTCCTGAGGCG+TGG 0.618045 7.4:+16032611 MS.gene072379:CDS
TTCTCAGTGGTGGCTCAGCA+CGG 0.618075 7.4:-16033740 None:intergenic
GACTCGATCAGTCTCGAGTG+TGG 0.619232 7.4:-16033496 None:intergenic
CTCCGGTCCATCATCTGTAA+GGG 0.619971 7.4:-16032970 None:intergenic
TCGATAGCTTTGCACCGAGG+TGG 0.623002 7.4:+16033331 MS.gene072379:CDS
GACGTGTGTCCATGTGAGGT+GGG 0.624040 7.4:-16034037 None:intergenic
AAAGAGACCAAACCCCACCT+TGG 0.627049 7.4:+16032148 MS.gene072379:CDS
GAGTTTGGTACTATAGATGG+AGG 0.627109 7.4:+16034006 MS.gene072379:CDS
GTGGAATGAGCAGTATACTT+GGG 0.627653 7.4:+16033350 MS.gene072379:CDS
GTGGAATATATGCTGGATGT+CGG 0.627998 7.4:+16033771 MS.gene072379:CDS
CTAACAAAGAGGAACTGCTA+GGG 0.630417 7.4:+16032935 MS.gene072379:CDS
TCTTGCAAATATTAGGTCGA+AGG 0.630876 7.4:+16032669 MS.gene072379:CDS
GGTACTATAGATGGAGGCCA+AGG 0.630984 7.4:+16034012 MS.gene072379:CDS
CTTTGCTACACAGTAAGCAT+CGG 0.631955 7.4:-16033274 None:intergenic
CGATGAAATCAAATAATGGG+AGG 0.632153 7.4:+16033244 MS.gene072379:CDS
GATCGTCTGAGAAGTATCGC+CGG 0.633165 7.4:+16034155 MS.gene072379:CDS
GATACTGCATTTGCTCAACA+AGG 0.633581 7.4:-16032210 None:intergenic
TTTGAAACAACAAGATGCAG+AGG 0.633933 7.4:+16032101 None:intergenic
CTCCAGGCTTATCACCACCA+TGG 0.635088 7.4:-16033431 None:intergenic
ATCAAATCCTCATTCCACAT+CGG 0.635499 7.4:-16032850 None:intergenic
ACTCTTCATCTAGTTCGTCA+GGG 0.644466 7.4:-16034082 None:intergenic
GATGAAATCAAATAATGGGA+GGG 0.644856 7.4:+16033245 MS.gene072379:CDS
GAATGAGCAGTATACTTGGG+AGG 0.645094 7.4:+16033353 MS.gene072379:CDS
TCCTCCACACTCAAAATCAG+TGG 0.646052 7.4:-16032901 None:intergenic
CAGAGACCTTACCACCAAGG+TGG 0.649836 7.4:-16032162 None:intergenic
TAGGATACAAACTGTTGTCG+GGG 0.649861 7.4:+16034178 MS.gene072379:CDS
TTTGAGGGTTAATGTGATCG+AGG 0.650146 7.4:+16032717 MS.gene072379:CDS
ATGAGGGTCTGTCTAGAAGG+TGG 0.652057 7.4:+16033099 MS.gene072379:CDS
AACCTCCTGAAGAAATTGAG+TGG 0.658154 7.4:-16034392 None:intergenic
TAGGGTTGCGCCTAACAAAG+AGG 0.658831 7.4:+16032924 MS.gene072379:CDS
CAAGACCTTCTGACATCGTG+AGG 0.659186 7.4:+16034123 MS.gene072379:CDS
TGGATGTCGGTTCCCACATG+TGG 0.659218 7.4:+16033784 MS.gene072379:CDS
CTTCTTCTCGAAATGCCTCG+TGG 0.659513 7.4:-16032332 None:intergenic
GTTGGATGAAGAACTAGAAG+CGG 0.659701 7.4:-16033534 None:intergenic
TTTATGTGTTGAGACATCCA+AGG 0.671355 7.4:+16034345 MS.gene072379:CDS
CTCCAGAGACCTTACCACCA+AGG 0.672025 7.4:-16032165 None:intergenic
TCTAGTTCTTCATCCAACTG+GGG 0.674320 7.4:+16033539 MS.gene072379:CDS
GCAGGAGTATCAATCCGATG+TGG 0.681926 7.4:+16032836 MS.gene072379:CDS
GATAACTGTCACTTGCACCA+TGG 0.683890 7.4:+16033414 MS.gene072379:CDS
ATCTCAATGAGATTCCGAAG+AGG 0.685604 7.4:+16032479 MS.gene072379:CDS
GAGACCTTACCACCAAGGTG+GGG 0.689512 7.4:-16032160 None:intergenic
GAGAGACGTGTGTCCATGTG+AGG 0.692622 7.4:-16034041 None:intergenic
TCTTCGCATACTCCACATGT+GGG 0.694693 7.4:-16033796 None:intergenic
GTCTGAGAAGTATCGCCGGT+AGG 0.699160 7.4:+16034159 MS.gene072379:CDS
GGCGCCAGAGGACTATCAGG+AGG 0.702158 7.4:-16032505 None:intergenic
TGAGCCACCACTGAGAAAGG+AGG 0.712947 7.4:+16033746 MS.gene072379:CDS
GTATACTGCTCATTCCACCT+CGG 0.723662 7.4:-16033345 None:intergenic
AACTGTCACTTGCACCATGG+TGG 0.724351 7.4:+16033417 MS.gene072379:CDS
TCATCGATAGCTTTGCACCG+AGG 0.746528 7.4:+16033328 MS.gene072379:CDS
CATGGTGGTGATAAGCCTGG+AGG 0.753318 7.4:+16033432 MS.gene072379:CDS
TCCTCCAATCTATACCACTG+CGG 0.756616 7.4:-16032526 None:intergenic
TGATAAGGGAAGATTCCCGG+AGG 0.760486 7.4:+16032759 MS.gene072379:CDS
GTAATTACAAAGGAACCACG+AGG 0.808607 7.4:+16032317 MS.gene072379:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATGCAGTATCTTTATGTT+AGG + chr7.4:16032221-16032240 MS.gene072379:CDS 25.0%
! AATGCAGTATCTTTATGTTA+GGG + chr7.4:16032222-16032241 MS.gene072379:CDS 25.0%
!! TGAAAAGCATGTTGTTATTA+TGG + chr7.4:16033032-16033051 MS.gene072379:CDS 25.0%
!! TTTGTGAAGGATGATTTTAT+CGG + chr7.4:16032442-16032461 MS.gene072379:CDS 25.0%
AAGAGGTAAAGGAAAATTGT+TGG - chr7.4:16033978-16033997 None:intergenic 30.0%
ATGCCGATGAAATCAAATAA+TGG + chr7.4:16033240-16033259 MS.gene072379:CDS 30.0%
GGACAAAGAGATTCAAAAAT+CGG + chr7.4:16033453-16033472 MS.gene072379:CDS 30.0%
TCTTTCAACAGAAAATCTTC+TGG - chr7.4:16032133-16032152 None:intergenic 30.0%
TGCCGATGAAATCAAATAAT+GGG + chr7.4:16033241-16033260 MS.gene072379:CDS 30.0%
! AAGCATGTTGTTATTATGGA+AGG + chr7.4:16033036-16033055 MS.gene072379:CDS 30.0%
! AGCATGTTGTTATTATGGAA+GGG + chr7.4:16033037-16033056 MS.gene072379:CDS 30.0%
! ATGAAATCAAATAATGGGAG+GGG + chr7.4:16033246-16033265 MS.gene072379:CDS 30.0%
! ATTGTTGGTAAGATAAGTTC+AGG - chr7.4:16033963-16033982 None:intergenic 30.0%
! CTCCCATTATTTGATTTCAT+CGG - chr7.4:16033246-16033265 None:intergenic 30.0%
! GAAAGATAAGGATTTTGTGA+AGG + chr7.4:16032429-16032448 MS.gene072379:CDS 30.0%
! GATGAAATCAAATAATGGGA+GGG + chr7.4:16033245-16033264 MS.gene072379:CDS 30.0%
! TGAGGTTTTTGTGAAAGATA+AGG + chr7.4:16032417-16032436 MS.gene072379:CDS 30.0%
! TTCCTTTACCTCTTTTTGAT+TGG + chr7.4:16033984-16034003 MS.gene072379:CDS 30.0%
! TTGTTGGTAAGATAAGTTCA+GGG - chr7.4:16033962-16033981 None:intergenic 30.0%
!! GTTTATGTGAAGGCTATTTT+GGG + chr7.4:16032781-16032800 MS.gene072379:CDS 30.0%
!!! AGCCAATTTTTTCAGAATCA+TGG + chr7.4:16033824-16033843 MS.gene072379:CDS 30.0%
!!! CAATTTTTTCAGAATCATGG+GGG + chr7.4:16033827-16033846 MS.gene072379:CDS 30.0%
!!! CCAATTTTTTCAGAATCATG+GGG + chr7.4:16033826-16033845 MS.gene072379:CDS 30.0%
!!! GCCAATTTTTTCAGAATCAT+GGG + chr7.4:16033825-16033844 MS.gene072379:CDS 30.0%
!!! TTTTTGCTTTTTCGAAGGAT+CGG + chr7.4:16032377-16032396 MS.gene072379:CDS 30.0%
ACCAAACTCCAATCAAAAAG+AGG - chr7.4:16033995-16034014 None:intergenic 35.0%
AGAAGAAGACTAATCCTGAA+TGG + chr7.4:16032347-16032366 MS.gene072379:CDS 35.0%
AGCAAAGTATGGACAGAAAT+GGG + chr7.4:16033290-16033309 MS.gene072379:CDS 35.0%
ATCAAATCCTCATTCCACAT+CGG - chr7.4:16032853-16032872 None:intergenic 35.0%
CAAGCTTGACTTCAACATAA+GGG - chr7.4:16032297-16032316 None:intergenic 35.0%
CTCCAATCAAAAAGAGGTAA+AGG - chr7.4:16033989-16034008 None:intergenic 35.0%
CTGATGCTCTTGCAAATATT+AGG + chr7.4:16032662-16032681 MS.gene072379:CDS 35.0%
GAAAATGGGAGAAATTCAAC+TGG + chr7.4:16033566-16033585 MS.gene072379:CDS 35.0%
GAATCAGAACTGTTGTGATA+GGG - chr7.4:16033911-16033930 None:intergenic 35.0%
GAATGAGGATTTGATGTTTG+TGG + chr7.4:16032858-16032877 MS.gene072379:CDS 35.0%
GGATGAATGTAATGCATCTT+GGG - chr7.4:16033654-16033673 None:intergenic 35.0%
TAGCAAAGTATGGACAGAAA+TGG + chr7.4:16033289-16033308 MS.gene072379:CDS 35.0%
TCTTGCAAATATTAGGTCGA+AGG + chr7.4:16032669-16032688 MS.gene072379:CDS 35.0%
TCTTTATGTTAGGGTTGTGA+AGG + chr7.4:16032231-16032250 MS.gene072379:CDS 35.0%
TGAATCAGAACTGTTGTGAT+AGG - chr7.4:16033912-16033931 None:intergenic 35.0%
TGGATGAATGTAATGCATCT+TGG - chr7.4:16033655-16033674 None:intergenic 35.0%
TGTATCTATCTCCTAAGCTT+TGG + chr7.4:16032692-16032711 MS.gene072379:CDS 35.0%
TGTTATTCCCTTACAGATGA+TGG + chr7.4:16032963-16032982 MS.gene072379:CDS 35.0%
TTCAACAGAAAATCTTCTGG+AGG - chr7.4:16032130-16032149 None:intergenic 35.0%
TTGGAGTTTGGTACTATAGA+TGG + chr7.4:16034003-16034022 MS.gene072379:CDS 35.0%
TTTATGTGTTGAGACATCCA+AGG + chr7.4:16034345-16034364 MS.gene072379:CDS 35.0%
! AGAAGGTGGTTATCATGTTT+TGG + chr7.4:16033113-16033132 MS.gene072379:CDS 35.0%
! ATGATTTTATCGGTCGTGTT+TGG + chr7.4:16032452-16032471 MS.gene072379:CDS 35.0%
! CCCCATGATTCTGAAAAAAT+TGG - chr7.4:16033829-16033848 None:intergenic 35.0%
! CGATGAAATCAAATAATGGG+AGG + chr7.4:16033244-16033263 MS.gene072379:CDS 35.0%
! GATTAATTGCTGTTGGAAAG+TGG + chr7.4:16033859-16033878 MS.gene072379:CDS 35.0%
! GCATGTTGTTATTATGGAAG+GGG + chr7.4:16033038-16033057 MS.gene072379:CDS 35.0%
! GGTTTATGTGAAGGCTATTT+TGG + chr7.4:16032780-16032799 MS.gene072379:CDS 35.0%
! GGTTTTTCCAATTGCAGATT+TGG - chr7.4:16033890-16033909 None:intergenic 35.0%
! GTCAAGCTTGGTAATTACAA+AGG + chr7.4:16032307-16032326 MS.gene072379:CDS 35.0%
! TCCTAAGCTTTGGTATTTGA+GGG + chr7.4:16032702-16032721 MS.gene072379:CDS 35.0%
! TGAAATCAAATAATGGGAGG+GGG + chr7.4:16033247-16033266 MS.gene072379:CDS 35.0%
!! ACCTCTTTTTGATTGGAGTT+TGG + chr7.4:16033991-16034010 MS.gene072379:CDS 35.0%
!! TTCTAGTTCTTCATCCAACT+GGG + chr7.4:16033538-16033557 MS.gene072379:CDS 35.0%
!! TTGAGTGGATTAATTGCTGT+TGG + chr7.4:16033852-16033871 MS.gene072379:CDS 35.0%
!!! AGTATTGGAGTTTTGGAAGT+GGG + chr7.4:16033195-16033214 MS.gene072379:CDS 35.0%
!!! TCAGGTTTTTGCTTTTTCGA+AGG + chr7.4:16032372-16032391 MS.gene072379:CDS 35.0%
AAAATCAGTGGCTCCTCAAA+CGG - chr7.4:16032892-16032911 None:intergenic 40.0%
AACCTCCTGAAGAAATTGAG+TGG - chr7.4:16034395-16034414 None:intergenic 40.0%
AAGAAATTGAGTGGCACAGA+AGG - chr7.4:16034386-16034405 None:intergenic 40.0%
ACAAACCTGTGAACACTAGA+TGG + chr7.4:16033001-16033020 MS.gene072379:CDS 40.0%
ACCCTCAAATACCAAAGCTT+AGG - chr7.4:16032706-16032725 None:intergenic 40.0%
AGAAGAGCCACAACTTGAAA+TGG - chr7.4:16034317-16034336 None:intergenic 40.0%
AGGAAATCAAGTTTGCAAGC+AGG + chr7.4:16033070-16033089 MS.gene072379:CDS 40.0%
AGTGGGGATATTGAATGCTT+CGG + chr7.4:16033212-16033231 MS.gene072379:CDS 40.0%
AGTGGTATAGATTGGAGGAT+AGG + chr7.4:16032530-16032549 MS.gene072379:CDS 40.0%
ATAGCCTTCACATAAACCTC+CGG - chr7.4:16032778-16032797 None:intergenic 40.0%
ATCTCAATGAGATTCCGAAG+AGG + chr7.4:16032479-16032498 MS.gene072379:CDS 40.0%
ATGAAGAACTAGAAGCGGAT+AGG - chr7.4:16033532-16033551 None:intergenic 40.0%
CATTTGCTCAACAAGGTCAT+AGG - chr7.4:16032206-16032225 None:intergenic 40.0%
CCAAGCTTGACTTCAACATA+AGG - chr7.4:16032298-16032317 None:intergenic 40.0%
CCAATTGTAATGACAGTGCA+CGG - chr7.4:16033387-16033406 None:intergenic 40.0%
CCTTATGTTGAAGTCAAGCT+TGG + chr7.4:16032295-16032314 MS.gene072379:CDS 40.0%
CTAACAAAGAGGAACTGCTA+GGG + chr7.4:16032935-16032954 MS.gene072379:CDS 40.0%
CTTTGCTACACAGTAAGCAT+CGG - chr7.4:16033277-16033296 None:intergenic 40.0%
GACAACAGTTTGTATCCTAC+CGG - chr7.4:16034177-16034196 None:intergenic 40.0%
GACTAATCCTGAATGGAATC+AGG + chr7.4:16032354-16032373 MS.gene072379:CDS 40.0%
GAGAAATTCAACTGGCTGTA+AGG + chr7.4:16033574-16033593 MS.gene072379:CDS 40.0%
GAGTTTGGTACTATAGATGG+AGG + chr7.4:16034006-16034025 MS.gene072379:CDS 40.0%
GATACTGCATTTGCTCAACA+AGG - chr7.4:16032213-16032232 None:intergenic 40.0%
GCAAAAACCTGATTCCATTC+AGG - chr7.4:16032364-16032383 None:intergenic 40.0%
GCTTACTGTGTAGCAAAGTA+TGG + chr7.4:16033279-16033298 MS.gene072379:CDS 40.0%
GGTAGGATACAAACTGTTGT+CGG + chr7.4:16034176-16034195 MS.gene072379:CDS 40.0%
GGTTTGACCAAATCTGCAAT+TGG + chr7.4:16033880-16033899 MS.gene072379:CDS 40.0%
GTAATTACAAAGGAACCACG+AGG + chr7.4:16032317-16032336 MS.gene072379:CDS 40.0%
GTAGGATACAAACTGTTGTC+GGG + chr7.4:16034177-16034196 MS.gene072379:CDS 40.0%
GTGGAATATATGCTGGATGT+CGG + chr7.4:16033771-16033790 MS.gene072379:CDS 40.0%
GTGGAATGAGCAGTATACTT+GGG + chr7.4:16033350-16033369 MS.gene072379:CDS 40.0%
GTTGGATGAAGAACTAGAAG+CGG - chr7.4:16033537-16033556 None:intergenic 40.0%
TAGGATACAAACTGTTGTCG+GGG + chr7.4:16034178-16034197 MS.gene072379:CDS 40.0%
TATCAATCCGATGTGGAATG+AGG + chr7.4:16032843-16032862 MS.gene072379:CDS 40.0%
TCTCAATGAGATTCCGAAGA+GGG + chr7.4:16032480-16032499 MS.gene072379:CDS 40.0%
TGCAAGCAGGATTCATATGA+GGG + chr7.4:16033083-16033102 MS.gene072379:CDS 40.0%
TTGAACCATCTAGTGTTCAC+AGG - chr7.4:16033009-16033028 None:intergenic 40.0%
TTGCAAGCAGGATTCATATG+AGG + chr7.4:16033082-16033101 MS.gene072379:CDS 40.0%
TTTGAATCTCTTTGTCCTCC+AGG - chr7.4:16033450-16033469 None:intergenic 40.0%
TTTGAGGGTTAATGTGATCG+AGG + chr7.4:16032717-16032736 MS.gene072379:CDS 40.0%
! AACAGAAAATCTTCTGGAGG+AGG - chr7.4:16032127-16032146 None:intergenic 40.0%
! AACTCTTCATCTAGTTCGTC+AGG - chr7.4:16034086-16034105 None:intergenic 40.0%
! ACTCTTCATCTAGTTCGTCA+GGG - chr7.4:16034085-16034104 None:intergenic 40.0%
! CTCCTAAGCTTTGGTATTTG+AGG + chr7.4:16032701-16032720 MS.gene072379:CDS 40.0%
! GAATAGCACAAAAAGTGCAG+TGG - chr7.4:16034261-16034280 None:intergenic 40.0%
!! CTTCTAGTTCTTCATCCAAC+TGG + chr7.4:16033537-16033556 MS.gene072379:CDS 40.0%
!! GATTTTGAGTGTGGAGGATA+GGG + chr7.4:16032906-16032925 MS.gene072379:CDS 40.0%
!! TCTAGTTCTTCATCCAACTG+GGG + chr7.4:16033539-16033558 MS.gene072379:CDS 40.0%
!! TGATTTTGAGTGTGGAGGAT+AGG + chr7.4:16032905-16032924 MS.gene072379:CDS 40.0%
!! TGTGACTCCATTTCAAGTTG+TGG + chr7.4:16034307-16034326 MS.gene072379:CDS 40.0%
!! TTTTGGGAAATCAGACCTTG+AGG + chr7.4:16032797-16032816 MS.gene072379:CDS 40.0%
!! TTTTTCGAAGGATCGGATTC+AGG + chr7.4:16032384-16032403 MS.gene072379:CDS 40.0%
!!! GAAGTCGAGTATTGGAGTTT+TGG + chr7.4:16033188-16033207 MS.gene072379:CDS 40.0%
!!! GAGTATTGGAGTTTTGGAAG+TGG + chr7.4:16033194-16033213 MS.gene072379:CDS 40.0%
!!! GTATTGGAGTTTTGGAAGTG+GGG + chr7.4:16033196-16033215 MS.gene072379:CDS 40.0%
ACAAACTGTTGTCGGGGATT+TGG + chr7.4:16034184-16034203 MS.gene072379:CDS 45.0%
AGCATGCAATCAGTTCTTGC+AGG - chr7.4:16034419-16034438 None:intergenic 45.0%
AGGAAGAGTGATAAGGTGAG+AGG + chr7.4:16032550-16032569 MS.gene072379:CDS 45.0%
ATTCCCGGAGGTTTATGTGA+AGG + chr7.4:16032771-16032790 MS.gene072379:CDS 45.0%
CATATGAGGGTCTGTCTAGA+AGG + chr7.4:16033096-16033115 MS.gene072379:CDS 45.0%
CCAACTGGGGTGAAGAAAAT+GGG + chr7.4:16033552-16033571 MS.gene072379:CDS 45.0%
CCGTGCACTGTCATTACAAT+TGG + chr7.4:16033384-16033403 MS.gene072379:CDS 45.0%
CCTAACAAAGAGGAACTGCT+AGG + chr7.4:16032934-16032953 MS.gene072379:CDS 45.0%
CCTAGCAGTTCCTCTTTGTT+AGG - chr7.4:16032937-16032956 None:intergenic 45.0%
CTACCTGCGAAAGATGTTAC+TGG + chr7.4:16032262-16032281 MS.gene072379:CDS 45.0%
CTGAGAGATTCTAGTCCTCA+AGG - chr7.4:16032815-16032834 None:intergenic 45.0%
CTTCCAGTAACATCTTTCGC+AGG - chr7.4:16032268-16032287 None:intergenic 45.0%
GAAGAGTGATAAGGTGAGAG+GGG + chr7.4:16032552-16032571 MS.gene072379:CDS 45.0%
GAATGAGCAGTATACTTGGG+AGG + chr7.4:16033353-16033372 MS.gene072379:CDS 45.0%
GACTTGCAACCGTCTGATAA+GGG + chr7.4:16032745-16032764 MS.gene072379:CDS 45.0%
GGAAGAGTGATAAGGTGAGA+GGG + chr7.4:16032551-16032570 MS.gene072379:CDS 45.0%
GGAGGATAGGAAGAGTGATA+AGG + chr7.4:16032543-16032562 MS.gene072379:CDS 45.0%
GGGAATCTTCCCTTATCAGA+CGG - chr7.4:16032757-16032776 None:intergenic 45.0%
GGTGGAATGAGCAGTATACT+TGG + chr7.4:16033349-16033368 MS.gene072379:CDS 45.0%
GTATACTGCTCATTCCACCT+CGG - chr7.4:16033348-16033367 None:intergenic 45.0%
GTCTGATAAGGGAAGATTCC+CGG + chr7.4:16032756-16032775 MS.gene072379:CDS 45.0%
GTGGGGATATTGAATGCTTC+GGG + chr7.4:16033213-16033232 MS.gene072379:CDS 45.0%
TAATGCATCTTGGGCAGCAA+TGG - chr7.4:16033645-16033664 None:intergenic 45.0%
TAGCCTTCACATAAACCTCC+GGG - chr7.4:16032777-16032796 None:intergenic 45.0%
TATGGAAGGGGACAAGAAGA+AGG + chr7.4:16033050-16033069 MS.gene072379:CDS 45.0%
TCCAACTGGGGTGAAGAAAA+TGG + chr7.4:16033551-16033570 MS.gene072379:CDS 45.0%
TCCTCCAATCTATACCACTG+CGG - chr7.4:16032529-16032548 None:intergenic 45.0%
TCCTCCACACTCAAAATCAG+TGG - chr7.4:16032904-16032923 None:intergenic 45.0%
TCTTCGCATACTCCACATGT+GGG - chr7.4:16033799-16033818 None:intergenic 45.0%
TGCCACTCAATTTCTTCAGG+AGG + chr7.4:16034390-16034409 MS.gene072379:CDS 45.0%
TTCTTCGCATACTCCACATG+TGG - chr7.4:16033800-16033819 None:intergenic 45.0%
! ACAAAAAGTGCAGTGGCTCT+TGG - chr7.4:16034254-16034273 None:intergenic 45.0%
! ATGTCAGAAGGTCTTGTGGT+TGG - chr7.4:16034119-16034138 None:intergenic 45.0%
! CTGTGCCACTCAATTTCTTC+AGG + chr7.4:16034387-16034406 MS.gene072379:CDS 45.0%
! GATAACTGTCACTTGCACCA+TGG + chr7.4:16033414-16033433 MS.gene072379:CDS 45.0%
!! GGAGGTAGTGGAATATATGC+TGG + chr7.4:16033764-16033783 MS.gene072379:CDS 45.0%
!! TTCCCTTACAGATGATGGAC+CGG + chr7.4:16032968-16032987 MS.gene072379:CDS 45.0%
!!! AGAATCATGGGGGTTTTGAG+TGG + chr7.4:16033837-16033856 MS.gene072379:CDS 45.0%
AAAGAGACCAAACCCCACCT+TGG + chr7.4:16032148-16032167 MS.gene072379:CDS 50.0%
ACCACTGAGAAAGGAGGTAG+TGG + chr7.4:16033752-16033771 MS.gene072379:CDS 50.0%
ACTACCTCCTTTCTCAGTGG+TGG - chr7.4:16033753-16033772 None:intergenic 50.0%
AGAGACCTTACCACCAAGGT+GGG - chr7.4:16032164-16032183 None:intergenic 50.0%
ATCTTTCGCAGGTAGCTCCT+TGG - chr7.4:16032257-16032276 None:intergenic 50.0%
ATGAGGGTCTGTCTAGAAGG+TGG + chr7.4:16033099-16033118 MS.gene072379:CDS 50.0%
CAAGACCTTCTGACATCGTG+AGG + chr7.4:16034123-16034142 MS.gene072379:CDS 50.0%
CAAGTTGTGGCTCTTCTCAC+TGG + chr7.4:16034320-16034339 MS.gene072379:CDS 50.0%
CACGATGTCAGAAGGTCTTG+TGG - chr7.4:16034123-16034142 None:intergenic 50.0%
CAGCTGTGGAAGTCGAGTAT+TGG + chr7.4:16033180-16033199 MS.gene072379:CDS 50.0%
CAGGTTTGTGATCGAGTCTC+CGG - chr7.4:16032990-16033009 None:intergenic 50.0%
CAGTAGTGATCTTCGCCCAA+CGG + chr7.4:16033152-16033171 MS.gene072379:CDS 50.0%
CAGTCTCGAGTGTGGAAAGA+CGG - chr7.4:16033491-16033510 None:intergenic 50.0%
CGGTGCAAAGCTATCGATGA+TGG - chr7.4:16033328-16033347 None:intergenic 50.0%
CTATCAGGAGGAACCCTCTT+CGG - chr7.4:16032496-16032515 None:intergenic 50.0%
CTCCGGTCCATCATCTGTAA+GGG - chr7.4:16032973-16032992 None:intergenic 50.0%
CTTCTTCTCGAAATGCCTCG+TGG - chr7.4:16032335-16032354 None:intergenic 50.0%
GAAGGATCGGATTCAGGCTT+CGG + chr7.4:16032390-16032409 MS.gene072379:CDS 50.0%
GATTCAGGCTTCGGTTCTTG+AGG + chr7.4:16032399-16032418 MS.gene072379:CDS 50.0%
GGAAGCTTGTGACGAAACCT+TGG - chr7.4:16034365-16034384 None:intergenic 50.0%
GGACTAGAATCTCTCAGAGC+AGG + chr7.4:16032818-16032837 MS.gene072379:CDS 50.0%
GGACTTGCAACCGTCTGATA+AGG + chr7.4:16032744-16032763 MS.gene072379:CDS 50.0%
GGTACTATAGATGGAGGCCA+AGG + chr7.4:16034012-16034031 MS.gene072379:CDS 50.0%
GGTTAATGTGATCGAGGCAC+AGG + chr7.4:16032723-16032742 MS.gene072379:CDS 50.0%
TAGGGTTGCGCCTAACAAAG+AGG + chr7.4:16032924-16032943 MS.gene072379:CDS 50.0%
TCCACTACCTCCTTTCTCAG+TGG - chr7.4:16033756-16033775 None:intergenic 50.0%
TCGAGCTGGCTGACTGTTAA+TGG - chr7.4:16033675-16033694 None:intergenic 50.0%
TCTCCGGTCCATCATCTGTA+AGG - chr7.4:16032974-16032993 None:intergenic 50.0%
TGATAAGGGAAGATTCCCGG+AGG + chr7.4:16032759-16032778 MS.gene072379:CDS 50.0%
TGTTAGGGTTGTGAAGGCCA+AGG + chr7.4:16032237-16032256 MS.gene072379:CDS 50.0%
! AACTGTCACTTGCACCATGG+TGG + chr7.4:16033417-16033436 MS.gene072379:CDS 50.0%
! AGCTGATGAAGCGTTTCCTG+AGG + chr7.4:16032606-16032625 MS.gene072379:CDS 50.0%
! ATCTAGTTCGTCAGGGTGTG+CGG - chr7.4:16034078-16034097 None:intergenic 50.0%
! CCCATTTTCTTCACCCCAGT+TGG - chr7.4:16033555-16033574 None:intergenic 50.0%
! CTGATGCTGGCTGTTTGGAT+GGG + chr7.4:16032577-16032596 MS.gene072379:CDS 50.0%
! TCATCGATAGCTTTGCACCG+AGG + chr7.4:16033328-16033347 MS.gene072379:CDS 50.0%
!! GATCGTCTGAGAAGTATCGC+CGG + chr7.4:16034155-16034174 MS.gene072379:CDS 50.0%
!! GCAGGAGTATCAATCCGATG+TGG + chr7.4:16032836-16032855 MS.gene072379:CDS 50.0%
!!! GCCACTGATTTTGAGTGTGG+AGG + chr7.4:16032900-16032919 MS.gene072379:CDS 50.0%
!!! GGAGCCACTGATTTTGAGTG+TGG + chr7.4:16032897-16032916 MS.gene072379:CDS 50.0%
AGACGTGTGTCCATGTGAGG+TGG - chr7.4:16034041-16034060 None:intergenic 55.0%
AGGGTGTGCGGAATCAGCAT+GGG - chr7.4:16034066-16034085 None:intergenic 55.0%
CAGAGACCTTACCACCAAGG+TGG - chr7.4:16032165-16032184 None:intergenic 55.0%
CGCATCCTCACGATGTCAGA+AGG - chr7.4:16034131-16034150 None:intergenic 55.0%
CTCAGCACGGCTAAGTCTCA+TGG - chr7.4:16033730-16033749 None:intergenic 55.0%
CTCCAGAGACCTTACCACCA+AGG - chr7.4:16032168-16032187 None:intergenic 55.0%
CTCCAGGCTTATCACCACCA+TGG - chr7.4:16033434-16033453 None:intergenic 55.0%
CTTACCACCAAGGTGGGGTT+TGG - chr7.4:16032158-16032177 None:intergenic 55.0%
GACGTGTGTCCATGTGAGGT+GGG - chr7.4:16034040-16034059 None:intergenic 55.0%
GACTCGATCAGTCTCGAGTG+TGG - chr7.4:16033499-16033518 None:intergenic 55.0%
GACTGCAGTCTTTGCTGAGC+TGG + chr7.4:16034222-16034241 MS.gene072379:CDS 55.0%
GAGACCTTACCACCAAGGTG+GGG - chr7.4:16032163-16032182 None:intergenic 55.0%
GAGAGACGTGTGTCCATGTG+AGG - chr7.4:16034044-16034063 None:intergenic 55.0%
GCCGCAGTGGTATAGATTGG+AGG + chr7.4:16032525-16032544 MS.gene072379:CDS 55.0%
GGTTCCTCCTGATAGTCCTC+TGG + chr7.4:16032501-16032520 MS.gene072379:CDS 55.0%
TGAGCCACCACTGAGAAAGG+AGG + chr7.4:16033746-16033765 MS.gene072379:CDS 55.0%
TGCTGAGCCACCACTGAGAA+AGG + chr7.4:16033743-16033762 MS.gene072379:CDS 55.0%
TGTGGCTGCAGAACCGTTTG+AGG + chr7.4:16032876-16032895 MS.gene072379:CDS 55.0%
TTCTCAGTGGTGGCTCAGCA+CGG - chr7.4:16033743-16033762 None:intergenic 55.0%
! ATGAAGCGTTTCCTGAGGCG+TGG + chr7.4:16032611-16032630 MS.gene072379:CDS 55.0%
! CAAACCCCACCTTGGTGGTA+AGG + chr7.4:16032156-16032175 MS.gene072379:CDS 55.0%
! CACCATGGTGGTGATAAGCC+TGG + chr7.4:16033429-16033448 MS.gene072379:CDS 55.0%
! CACCTTGGTGGTAAGGTCTC+TGG + chr7.4:16032163-16032182 MS.gene072379:CDS 55.0%
! CATGGTGGTGATAAGCCTGG+AGG + chr7.4:16033432-16033451 MS.gene072379:CDS 55.0%
! GCTGATGCTGGCTGTTTGGA+TGG + chr7.4:16032576-16032595 MS.gene072379:CDS 55.0%
! TCCACAGCTGTTTCGCCGTT+GGG - chr7.4:16033170-16033189 None:intergenic 55.0%
! TCGATAGCTTTGCACCGAGG+TGG + chr7.4:16033331-16033350 MS.gene072379:CDS 55.0%
! TTCCACAGCTGTTTCGCCGT+TGG - chr7.4:16033171-16033190 None:intergenic 55.0%
!! GTCTGAGAAGTATCGCCGGT+AGG + chr7.4:16034159-16034178 MS.gene072379:CDS 55.0%
!! TGGATGTCGGTTCCCACATG+TGG + chr7.4:16033784-16033803 MS.gene072379:CDS 55.0%
CAGGGTGTGCGGAATCAGCA+TGG - chr7.4:16034067-16034086 None:intergenic 60.0%
GAGACCAAACCCCACCTTGG+TGG + chr7.4:16032151-16032170 MS.gene072379:CDS 60.0%
GATGCCTCAGACTGTCGAGC+TGG - chr7.4:16033689-16033708 None:intergenic 60.0%
GGCGCCGCAGTGGTATAGAT+TGG + chr7.4:16032522-16032541 MS.gene072379:CDS 60.0%
GTCGGGGATTTGGCGACTCA+AGG + chr7.4:16034194-16034213 MS.gene072379:CDS 60.0%
GTTTCCTGAGGCGTGGCACT+CGG + chr7.4:16032618-16032637 MS.gene072379:CDS 60.0%
TCAGCCAGCTCGACAGTCTG+AGG + chr7.4:16033682-16033701 MS.gene072379:CDS 60.0%
TCCATGTGAGGTGGGTGCCT+TGG - chr7.4:16034032-16034051 None:intergenic 60.0%
! GGGAGCTGATGCTGGCTGTT+TGG + chr7.4:16032572-16032591 MS.gene072379:CDS 60.0%
ATAGTCCTCTGGCGCCGCAG+TGG + chr7.4:16032512-16032531 MS.gene072379:CDS 65.0%
CTATACCACTGCGGCGCCAG+AGG - chr7.4:16032520-16032539 None:intergenic 65.0%
GCCCAACGGCGAAACAGCTG+TGG + chr7.4:16033166-16033185 MS.gene072379:CDS 65.0%
GGCGCCAGAGGACTATCAGG+AGG - chr7.4:16032508-16032527 None:intergenic 65.0%
GGTGAGAGGGGAGCTGATGC+TGG + chr7.4:16032564-16032583 MS.gene072379:CDS 65.0%
TCGGATGCGGCGACGGTTAG+TGG + chr7.4:16032637-16032656 MS.gene072379:CDS 65.0%
TGAGGCGTGGCACTCGGATG+CGG + chr7.4:16032624-16032643 MS.gene072379:CDS 65.0%
TGCGGCGCCAGAGGACTATC+AGG - chr7.4:16032511-16032530 None:intergenic 65.0%
! GCCAAGGCACCCACCTCACA+TGG + chr7.4:16034028-16034047 MS.gene072379:CDS 65.0%
GCATCCGAGTGCCACGCCTC+AGG - chr7.4:16032625-16032644 None:intergenic 70.0%
GTGGCACTCGGATGCGGCGA+CGG + chr7.4:16032630-16032649 MS.gene072379:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 16032115 16034442 16032115 ID=MS.gene072379
chr7.4 mRNA 16032115 16034442 16032115 ID=MS.gene072379.t1;Parent=MS.gene072379
chr7.4 exon 16032115 16034442 16032115 ID=MS.gene072379.t1.exon1;Parent=MS.gene072379.t1
chr7.4 CDS 16032115 16034442 16032115 ID=cds.MS.gene072379.t1;Parent=MS.gene072379.t1
Gene Sequence

>MS.gene072379

ATGCAGAGGCCTCCTCCAGAAGATTTTCTGTTGAAAGAGACCAAACCCCACCTTGGTGGTAAGGTCTCTGGAGACAAGCTTACAAGTACCTATGACCTTGTTGAGCAAATGCAGTATCTTTATGTTAGGGTTGTGAAGGCCAAGGAGCTACCTGCGAAAGATGTTACTGGAAGTTGTGACCCTTATGTTGAAGTCAAGCTTGGTAATTACAAAGGAACCACGAGGCATTTCGAGAAGAAGACTAATCCTGAATGGAATCAGGTTTTTGCTTTTTCGAAGGATCGGATTCAGGCTTCGGTTCTTGAGGTTTTTGTGAAAGATAAGGATTTTGTGAAGGATGATTTTATCGGTCGTGTTTGGTTTGATCTCAATGAGATTCCGAAGAGGGTTCCTCCTGATAGTCCTCTGGCGCCGCAGTGGTATAGATTGGAGGATAGGAAGAGTGATAAGGTGAGAGGGGAGCTGATGCTGGCTGTTTGGATGGGTACTCAAGCTGATGAAGCGTTTCCTGAGGCGTGGCACTCGGATGCGGCGACGGTTAGTGGTACTGATGCTCTTGCAAATATTAGGTCGAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATCGAGGCACAGGACTTGCAACCGTCTGATAAGGGAAGATTCCCGGAGGTTTATGTGAAGGCTATTTTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAGAGCAGGAGTATCAATCCGATGTGGAATGAGGATTTGATGTTTGTGGCTGCAGAACCGTTTGAGGAGCCACTGATTTTGAGTGTGGAGGATAGGGTTGCGCCTAACAAAGAGGAACTGCTAGGGAAGTGTGTTATTCCCTTACAGATGATGGACCGGAGACTCGATCACAAACCTGTGAACACTAGATGGTTCAATATTGAAAAGCATGTTGTTATTATGGAAGGGGACAAGAAGAAGGAAATCAAGTTTGCAAGCAGGATTCATATGAGGGTCTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGTAGTGATCTTCGCCCAACGGCGAAACAGCTGTGGAAGTCGAGTATTGGAGTTTTGGAAGTGGGGATATTGAATGCTTCGGGTTTGATGCCGATGAAATCAAATAATGGGAGGGGGACTACCGATGCTTACTGTGTAGCAAAGTATGGACAGAAATGGGTGCGTACAAGAACCATCATCGATAGCTTTGCACCGAGGTGGAATGAGCAGTATACTTGGGAGGTTTTTGATCCGTGCACTGTCATTACAATTGGCGTATTCGATAACTGTCACTTGCACCATGGTGGTGATAAGCCTGGAGGACAAAGAGATTCAAAAATCGGCAAAGTAAGAATCCGTCTTTCCACACTCGAGACTGATCGAGTCTACACACATTCCTATCCGCTTCTAGTTCTTCATCCAACTGGGGTGAAGAAAATGGGAGAAATTCAACTGGCTGTAAGGTTTACTTGCTCTTCTTTGCTTAACATGATGCACATGTATTCAAATCCATTGCTGCCCAAGATGCATTACATTCATCCATTAACAGTCAGCCAGCTCGACAGTCTGAGGCATCAAGCTACTCAGATTGTTTCCATGAGACTTAGCCGTGCTGAGCCACCACTGAGAAAGGAGGTAGTGGAATATATGCTGGATGTCGGTTCCCACATGTGGAGTATGCGAAGAAGCAAAGCCAATTTTTTCAGAATCATGGGGGTTTTGAGTGGATTAATTGCTGTTGGAAAGTGGTTTGACCAAATCTGCAATTGGAAAAACCCTATCACAACAGTTCTGATTCATATTTTATTTATAATACTTGTCATGTACCCTGAACTTATCTTACCAACAATTTTCCTTTACCTCTTTTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGGCACCCACCTCACATGGACACACGTCTCTCCCATGCTGATTCCGCACACCCTGACGAACTAGATGAAGAGTTCGACACGTTTCCAACCACAAGACCTTCTGACATCGTGAGGATGCGATACGATCGTCTGAGAAGTATCGCCGGTAGGATACAAACTGTTGTCGGGGATTTGGCGACTCAAGGCGAAAGACTGCAGTCTTTGCTGAGCTGGAGAGATCCAAGAGCCACTGCACTTTTTGTGCTATTCTGTTTGATTGCTGCTATTGTACTTTATGTGACTCCATTTCAAGTTGTGGCTCTTCTCACTGGAATTTATGTGTTGAGACATCCAAGGTTTCGTCACAAGCTTCCTTCTGTGCCACTCAATTTCTTCAGGAGGTTGCCTGCAAGAACTGATTGCATGCTTTGA
Protein sequence

>MS.gene072379.t1

MQRPPPEDFLLKETKPHLGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKELPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASVLEVFVKDKDFVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKSDKVRGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVYVKAILGNQTLRTRISQSRSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHKPVNTRWFNIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPTGVKKMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML