AlfalfaGEDB | MS.gene072379

M. sativa cultivar XinJiangDaYe / MS.gene072379

KEGG: -
GO: -
PFAM: PF00168.33 PF08372.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072379.t1	XP_003625221.1	99.6	775	3	0	1	775	1	775	0.00E+00	1585.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072379.t1	Q9M2R0	90.2	776	72	3	1	775	1	773	0.0e+00	1453.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072379.t1	A2Q4U9	99.6	775	3	0	1	775	1	775	0.0e+00	1585.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049405	MS.gene072379	0.813423	2.58E-51	-1.69E-46
MS.gene049418	MS.gene072379	0.804934	1.70E-49	-1.69E-46
MS.gene051067	MS.gene072379	0.818031	2.42E-52	-1.69E-46
MS.gene054584	MS.gene072379	0.804379	2.22E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003921	MS.gene072379	PPI
MS.gene018794	MS.gene072379	PPI
MS.gene056344	MS.gene072379	PPI
MS.gene072379	MS.gene54603	PPI
MS.gene57362	MS.gene072379	PPI
MS.gene84949	MS.gene072379	PPI
MS.gene90013	MS.gene072379	PPI
MS.gene97681	MS.gene072379	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene072379.t1	MTR_7g092770	99.613	775	3	0	1	775	1	775	1606
MS.gene072379.t1	MTR_0305s0020	93.428	776	48	3	1	775	1	774	1498
MS.gene072379.t1	MTR_4g066150	81.982	777	131	7	1	775	1	770	1315
MS.gene072379.t1	MTR_3g027150	68.734	790	225	7	7	775	34	822	1165
MS.gene072379.t1	MTR_4g023460	69.289	788	220	8	7	775	358	1142	1155
MS.gene072379.t1	MTR_5g010390	69.063	779	228	6	6	775	233	1007	1151
MS.gene072379.t1	MTR_0291s0010	67.215	790	241	6	3	775	9	797	1145
MS.gene072379.t1	MTR_4g033215	65.290	775	256	8	8	775	276	1044	1063
MS.gene072379.t1	MTR_8g031270	60.307	781	291	8	6	775	231	1003	997
MS.gene072379.t1	MTR_7g076900	59.696	789	287	10	8	775	235	1013	972

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene072379.t1	AT3G57880	90.206	776	72	3	1	775	1	773	1473
MS.gene072379.t1	AT3G57880	90.206	776	72	3	1	775	1	773	1473
MS.gene072379.t1	AT3G57880	90.206	776	72	3	1	775	1	773	1473
MS.gene072379.t1	AT3G57880	90.206	776	72	3	1	775	1	773	1473
MS.gene072379.t1	AT1G51570	88.288	777	88	3	1	775	1	776	1437
MS.gene072379.t1	AT5G12970	81.105	778	135	7	1	775	1	769	1305
MS.gene072379.t1	AT5G06850	67.090	787	238	7	7	775	11	794	1150
MS.gene072379.t1	AT4G11610	68.205	780	232	7	6	775	238	1011	1140
MS.gene072379.t1	AT4G11610	68.205	780	232	7	6	775	234	1007	1140
MS.gene072379.t1	AT4G11610	68.205	780	232	7	6	775	101	874	1138

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Find 215 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTGGCTCCTCAAA+CGG	0.484536	7.4:-16032889	None:intergenic
AAAGAGACCAAACCCCACCT+TGG	0.627049	7.4:+16032148	MS.gene072379:CDS
AAATGCAGTATCTTTATGTT+AGG	0.287072	7.4:+16032221	MS.gene072379:CDS
AACAGAAAATCTTCTGGAGG+AGG	0.502805	7.4:-16032124	None:intergenic
AACCTCCTGAAGAAATTGAG+TGG	0.658154	7.4:-16034392	None:intergenic
AACTCTTCATCTAGTTCGTC+AGG	0.348361	7.4:-16034083	None:intergenic
AACTGTCACTTGCACCATGG+TGG	0.724351	7.4:+16033417	MS.gene072379:CDS
AAGAAATTGAGTGGCACAGA+AGG	0.506210	7.4:-16034383	None:intergenic
AAGAGGTAAAGGAAAATTGT+TGG	0.485200	7.4:-16033975	None:intergenic
AAGCATGTTGTTATTATGGA+AGG	0.483057	7.4:+16033036	MS.gene072379:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGGTAAAGGAAAATTGT+TGG	-	chr7.4:16033978-16033997	None:intergenic	30.0%
ATGCCGATGAAATCAAATAA+TGG	+	chr7.4:16033240-16033259	MS.gene072379:CDS	30.0%
GGACAAAGAGATTCAAAAAT+CGG	+	chr7.4:16033453-16033472	MS.gene072379:CDS	30.0%
TCTTTCAACAGAAAATCTTC+TGG	-	chr7.4:16032133-16032152	None:intergenic	30.0%
TGCCGATGAAATCAAATAAT+GGG	+	chr7.4:16033241-16033260	MS.gene072379:CDS	30.0%
ACCAAACTCCAATCAAAAAG+AGG	-	chr7.4:16033995-16034014	None:intergenic	35.0%
AGAAGAAGACTAATCCTGAA+TGG	+	chr7.4:16032347-16032366	MS.gene072379:CDS	35.0%
AGCAAAGTATGGACAGAAAT+GGG	+	chr7.4:16033290-16033309	MS.gene072379:CDS	35.0%
ATCAAATCCTCATTCCACAT+CGG	-	chr7.4:16032853-16032872	None:intergenic	35.0%
CAAGCTTGACTTCAACATAA+GGG	-	chr7.4:16032297-16032316	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	16032115	16034442	16032115	ID=MS.gene072379
chr7.4	mRNA	16032115	16034442	16032115	ID=MS.gene072379.t1;Parent=MS.gene072379
chr7.4	exon	16032115	16034442	16032115	ID=MS.gene072379.t1.exon1;Parent=MS.gene072379.t1
chr7.4	CDS	16032115	16034442	16032115	ID=cds.MS.gene072379.t1;Parent=MS.gene072379.t1

Gene Sequence

>MS.gene072379

ATGCAGAGGCCTCCTCCAGAAGATTTTCTGTTGAAAGAGACCAAACCCCACCTTGGTGGTAAGGTCTCTGGAGACAAGCTTACAAGTACCTATGACCTTGTTGAGCAAATGCAGTATCTTTATGTTAGGGTTGTGAAGGCCAAGGAGCTACCTGCGAAAGATGTTACTGGAAGTTGTGACCCTTATGTTGAAGTCAAGCTTGGTAATTACAAAGGAACCACGAGGCATTTCGAGAAGAAGACTAATCCTGAATGGAATCAGGTTTTTGCTTTTTCGAAGGATCGGATTCAGGCTTCGGTTCTTGAGGTTTTTGTGAAAGATAAGGATTTTGTGAAGGATGATTTTATCGGTCGTGTTTGGTTTGATCTCAATGAGATTCCGAAGAGGGTTCCTCCTGATAGTCCTCTGGCGCCGCAGTGGTATAGATTGGAGGATAGGAAGAGTGATAAGGTGAGAGGGGAGCTGATGCTGGCTGTTTGGATGGGTACTCAAGCTGATGAAGCGTTTCCTGAGGCGTGGCACTCGGATGCGGCGACGGTTAGTGGTACTGATGCTCTTGCAAATATTAGGTCGAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATCGAGGCACAGGACTTGCAACCGTCTGATAAGGGAAGATTCCCGGAGGTTTATGTGAAGGCTATTTTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAGAGCAGGAGTATCAATCCGATGTGGAATGAGGATTTGATGTTTGTGGCTGCAGAACCGTTTGAGGAGCCACTGATTTTGAGTGTGGAGGATAGGGTTGCGCCTAACAAAGAGGAACTGCTAGGGAAGTGTGTTATTCCCTTACAGATGATGGACCGGAGACTCGATCACAAACCTGTGAACACTAGATGGTTCAATATTGAAAAGCATGTTGTTATTATGGAAGGGGACAAGAAGAAGGAAATCAAGTTTGCAAGCAGGATTCATATGAGGGTCTGTCTAGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGTAGTGATCTTCGCCCAACGGCGAAACAGCTGTGGAAGTCGAGTATTGGAGTTTTGGAAGTGGGGATATTGAATGCTTCGGGTTTGATGCCGATGAAATCAAATAATGGGAGGGGGACTACCGATGCTTACTGTGTAGCAAAGTATGGACAGAAATGGGTGCGTACAAGAACCATCATCGATAGCTTTGCACCGAGGTGGAATGAGCAGTATACTTGGGAGGTTTTTGATCCGTGCACTGTCATTACAATTGGCGTATTCGATAACTGTCACTTGCACCATGGTGGTGATAAGCCTGGAGGACAAAGAGATTCAAAAATCGGCAAAGTAAGAATCCGTCTTTCCACACTCGAGACTGATCGAGTCTACACACATTCCTATCCGCTTCTAGTTCTTCATCCAACTGGGGTGAAGAAAATGGGAGAAATTCAACTGGCTGTAAGGTTTACTTGCTCTTCTTTGCTTAACATGATGCACATGTATTCAAATCCATTGCTGCCCAAGATGCATTACATTCATCCATTAACAGTCAGCCAGCTCGACAGTCTGAGGCATCAAGCTACTCAGATTGTTTCCATGAGACTTAGCCGTGCTGAGCCACCACTGAGAAAGGAGGTAGTGGAATATATGCTGGATGTCGGTTCCCACATGTGGAGTATGCGAAGAAGCAAAGCCAATTTTTTCAGAATCATGGGGGTTTTGAGTGGATTAATTGCTGTTGGAAAGTGGTTTGACCAAATCTGCAATTGGAAAAACCCTATCACAACAGTTCTGATTCATATTTTATTTATAATACTTGTCATGTACCCTGAACTTATCTTACCAACAATTTTCCTTTACCTCTTTTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGGCACCCACCTCACATGGACACACGTCTCTCCCATGCTGATTCCGCACACCCTGACGAACTAGATGAAGAGTTCGACACGTTTCCAACCACAAGACCTTCTGACATCGTGAGGATGCGATACGATCGTCTGAGAAGTATCGCCGGTAGGATACAAACTGTTGTCGGGGATTTGGCGACTCAAGGCGAAAGACTGCAGTCTTTGCTGAGCTGGAGAGATCCAAGAGCCACTGCACTTTTTGTGCTATTCTGTTTGATTGCTGCTATTGTACTTTATGTGACTCCATTTCAAGTTGTGGCTCTTCTCACTGGAATTTATGTGTTGAGACATCCAAGGTTTCGTCACAAGCTTCCTTCTGTGCCACTCAATTTCTTCAGGAGGTTGCCTGCAAGAACTGATTGCATGCTTTGA

Protein sequence

>MS.gene072379.t1

MQRPPPEDFLLKETKPHLGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKELPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRIQASVLEVFVKDKDFVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKSDKVRGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVYVKAILGNQTLRTRISQSRSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEELLGKCVIPLQMMDRRLDHKPVNTRWFNIEKHVVIMEGDKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLEVGILNASGLMPMKSNNGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHHGGDKPGGQRDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPTGVKKMGEIQLAVRFTCSSLLNMMHMYSNPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML