Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072533.t1 | XP_013458275.1 | 96.2 | 160 | 6 | 0 | 6 | 165 | 251 | 410 | 1.20E-45 | 193.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072533.t1 | A0A072USJ1 | 96.2 | 160 | 6 | 0 | 6 | 165 | 251 | 410 | 8.4e-46 | 193.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072533 | 0.8038 | 2.93E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene072533 | 0.810074 | 1.38E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene072533 | 0.800105 | 1.68E-48 | -1.69E-46 |
| MS.gene050509 | MS.gene072533 | 0.93529 | 1.07E-96 | -1.69E-46 |
| MS.gene052463 | MS.gene072533 | 0.803247 | 3.82E-49 | -1.69E-46 |
| MS.gene053272 | MS.gene072533 | -0.802018 | 6.85E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene072533 | 0.808819 | 2.57E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene072533 | 0.802577 | 5.25E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene072533 | 0.801195 | 1.01E-48 | -1.69E-46 |
| MS.gene058008 | MS.gene072533 | 0.805167 | 1.52E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene072533 | 0.810537 | 1.10E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene072533 | 0.809425 | 1.90E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene072533 | 0.808417 | 3.13E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene072533 | 0.814144 | 1.79E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene072533 | 0.812942 | 3.29E-51 | -1.69E-46 |
| MS.gene061160 | MS.gene072533 | 0.809202 | 2.13E-50 | -1.69E-46 |
| MS.gene061243 | MS.gene072533 | 0.80841 | 3.14E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072533.t1 | MTR_4g120360 | 96.250 | 160 | 6 | 0 | 6 | 165 | 251 | 410 | 6.27e-107 | 316 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072533.t1 | AT3G16760 | 51.786 | 168 | 61 | 6 | 1 | 165 | 268 | 418 | 2.83e-38 | 138 |
| MS.gene072533.t1 | AT3G16760 | 43.452 | 168 | 56 | 7 | 1 | 165 | 268 | 399 | 2.68e-21 | 91.7 |
Find 72 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTCCTGCTGGGATATC+AGG | 0.240809 | 7.2:-4388690 | MS.gene072533:CDS |
| AATTTGCTGATGCTATTAAA+TGG | 0.246283 | 7.2:-4388623 | MS.gene072533:CDS |
| CCAACACCAGTTCAAGCTTC+TGG | 0.260664 | 7.2:-4388876 | MS.gene072533:CDS |
| GGGCTTCCACCTCCTCCTGC+TGG | 0.273283 | 7.2:-4388699 | MS.gene072533:CDS |
| ATGCTATTAAATGGCTTTCA+TGG | 0.318577 | 7.2:-4388614 | MS.gene072533:CDS |
| ATCTTCTGAAATTGATGATT+GGG | 0.330063 | 7.2:-4388778 | MS.gene072533:CDS |
| AGTGGAAGTTTGGATTCTTA+TGG | 0.336424 | 7.2:-4386795 | MS.gene072533:CDS |
| GATGATTGGGGTACTGAGTT+TGG | 0.345895 | 7.2:-4388765 | MS.gene072533:CDS |
| TCATCTGGAGGTGGTGGTGG+TGG | 0.381873 | 7.2:-4388813 | MS.gene072533:CDS |
| CTACCACCACTTGATGGAAA+TGG | 0.389548 | 7.2:+4388945 | None:intergenic |
| TCTGGAGGTGGTGGTGGTGG+AGG | 0.391020 | 7.2:-4388810 | MS.gene072533:CDS |
| CAACACCAGTTCAAGCTTCT+GGG | 0.394009 | 7.2:-4388875 | MS.gene072533:CDS |
| CATCTTCTGAAATTGATGAT+TGG | 0.399843 | 7.2:-4388779 | MS.gene072533:CDS |
| ACTTCTTGTTATAAAGAAGT+TGG | 0.401361 | 7.2:-4388528 | MS.gene072533:CDS |
| TATAATACCAAGCAAAGGTT+CGG | 0.403906 | 7.2:-4386662 | MS.gene072533:CDS |
| CCAACACTACCACCACTTGA+TGG | 0.411604 | 7.2:+4388939 | None:intergenic |
| AGGGATGGATAATTACAAAC+AGG | 0.417808 | 7.2:-4388649 | MS.gene072533:CDS |
| GGCTTCCACCTCCTCCTGCT+GGG | 0.431491 | 7.2:-4388698 | MS.gene072533:CDS |
| CCATCATCTGGAGGTGGTGG+TGG | 0.433402 | 7.2:-4388816 | MS.gene072533:CDS |
| AGGTGGTGGTGGTGGAGGTG+CGG | 0.446270 | 7.2:-4388805 | MS.gene072533:CDS |
| GGGACAACCACTGAGCTTGA+TGG | 0.450240 | 7.2:-4388720 | MS.gene072533:CDS |
| CTTATTCTTCTAGAGAAAGC+TGG | 0.452802 | 7.2:-4388588 | MS.gene072533:CDS |
| ACATCTACCACTCCATCATC+TGG | 0.458456 | 7.2:-4388828 | MS.gene072533:CDS |
| GGACAACCACTGAGCTTGAT+GGG | 0.464015 | 7.2:-4388719 | MS.gene072533:CDS |
| ATAATACCAAGCAAAGGTTC+GGG | 0.468232 | 7.2:-4386661 | MS.gene072533:CDS |
| CCAGAAGCTTGAACTGGTGT+TGG | 0.480586 | 7.2:+4388876 | None:intergenic |
| AAAGTATACCTTGGTACAAT+CGG | 0.485485 | 7.2:+4388485 | None:intergenic |
| TTATTCTTCTAGAGAAAGCT+GGG | 0.492606 | 7.2:-4388587 | MS.gene072533:CDS |
| AGCTGGGGATGGTGCTGGTA+CGG | 0.495673 | 7.2:-4388571 | MS.gene072533:CDS |
| CCACCACCACCTCCAGATGA+TGG | 0.495707 | 7.2:+4388816 | None:intergenic |
| GATATCCCAGCAGGAGGAGG+TGG | 0.497382 | 7.2:+4388693 | None:intergenic |
| CCATCAAGTGGTGGTAGTGT+TGG | 0.502799 | 7.2:-4388939 | MS.gene072533:CDS |
| GAGAAAGCTGGGGATGGTGC+TGG | 0.511690 | 7.2:-4388576 | MS.gene072533:CDS |
| TGGTGGTGGTGGAGGTGCGG+CGG | 0.514395 | 7.2:-4388802 | MS.gene072533:CDS |
| TGCTATTAAATGGCTTTCAT+GGG | 0.517180 | 7.2:-4388613 | MS.gene072533:CDS |
| TGGGGTACTGAGTTTGGAGG+AGG | 0.520172 | 7.2:-4388759 | MS.gene072533:CDS |
| TGGGGATGGTGCTGGTACGG+TGG | 0.527253 | 7.2:-4388568 | MS.gene072533:CDS |
| TGGATACCCGAACCTTTGCT+TGG | 0.528140 | 7.2:+4386655 | None:intergenic |
| TGGTTGTCCCACCAACATCA+TGG | 0.529915 | 7.2:+4388733 | None:intergenic |
| ACTCCATCATCTGGAGGTGG+TGG | 0.531742 | 7.2:-4388819 | MS.gene072533:CDS |
| GATTGGGGTACTGAGTTTGG+AGG | 0.532492 | 7.2:-4388762 | MS.gene072533:CDS |
| GGATGGTGCTGGTACGGTGG+AGG | 0.534756 | 7.2:-4388565 | MS.gene072533:CDS |
| ATATCAGGTTCTTCTGCTAA+AGG | 0.534928 | 7.2:-4388675 | MS.gene072533:CDS |
| GGTTCTTCTGCTAAAGGCAA+AGG | 0.540494 | 7.2:-4388669 | MS.gene072533:CDS |
| TCCCATCCATTTCCATCAAG+TGG | 0.550610 | 7.2:-4388951 | MS.gene072533:CDS |
| GTTCTTCTGCTAAAGGCAAA+GGG | 0.550732 | 7.2:-4388668 | MS.gene072533:CDS |
| CCTGATATCCCAGCAGGAGG+AGG | 0.553353 | 7.2:+4388690 | None:intergenic |
| CACCACTTGATGGAAATGGA+TGG | 0.559417 | 7.2:+4388949 | None:intergenic |
| ACCACTCCATCATCTGGAGG+TGG | 0.567943 | 7.2:-4388822 | MS.gene072533:CDS |
| ATTTGATGATCTTCATCATG+TGG | 0.570148 | 7.2:+4386635 | None:intergenic |
| CTTCTAGAGAAAGCTGGGGA+TGG | 0.579736 | 7.2:-4388582 | MS.gene072533:CDS |
| GAAGAACCTGATATCCCAGC+AGG | 0.585834 | 7.2:+4388684 | None:intergenic |
| TTCTGCTAAAGGCAAAGGGA+TGG | 0.585920 | 7.2:-4388664 | MS.gene072533:CDS |
| ACCACTTGATGGAAATGGAT+GGG | 0.594133 | 7.2:+4388950 | None:intergenic |
| AACACCAGTTCAAGCTTCTG+GGG | 0.598648 | 7.2:-4388874 | MS.gene072533:CDS |
| GAGTGAACACGGTTGATGCT+TGG | 0.608303 | 7.2:+4386592 | None:intergenic |
| GGAGGAAACCATGATGTTGG+TGG | 0.608973 | 7.2:-4388741 | MS.gene072533:CDS |
| TACAATATAATACCAAGCAA+AGG | 0.612865 | 7.2:-4386667 | MS.gene072533:CDS |
| GGAGGAGGAAACCATGATGT+TGG | 0.614688 | 7.2:-4388744 | MS.gene072533:CDS |
| TGTATAACAGTTCGTGATGG+AGG | 0.619504 | 7.2:-4386772 | MS.gene072533:CDS |
| GAGGAAACCATGATGTTGGT+GGG | 0.620042 | 7.2:-4388740 | MS.gene072533:CDS |
| TCTTCTGAAATTGATGATTG+GGG | 0.623414 | 7.2:-4388777 | MS.gene072533:CDS |
| TGGTGTATAACAGTTCGTGA+TGG | 0.624840 | 7.2:-4386775 | MS.gene072533:CDS |
| CATCCATTTCCATCAAGTGG+TGG | 0.662013 | 7.2:-4388948 | MS.gene072533:CDS |
| ACCACCTCCAGATGATGGAG+TGG | 0.663977 | 7.2:+4388821 | None:intergenic |
| GAACCTGATATCCCAGCAGG+AGG | 0.665419 | 7.2:+4388687 | None:intergenic |
| GGGATGGATAATTACAAACA+GGG | 0.676491 | 7.2:-4388648 | MS.gene072533:CDS |
| ACACCAGTTCAAGCTTCTGG+GGG | 0.679660 | 7.2:-4388873 | MS.gene072533:CDS |
| TCTACCACTCCATCATCTGG+AGG | 0.681710 | 7.2:-4388825 | MS.gene072533:CDS |
| TATTCTTCTAGAGAAAGCTG+GGG | 0.681721 | 7.2:-4388586 | MS.gene072533:CDS |
| AGGGGTGGCCGATTGTACCA+AGG | 0.686545 | 7.2:-4388493 | MS.gene072533:intron |
| TGGAAGCCCATCAAGCTCAG+TGG | 0.695115 | 7.2:+4388713 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTATAGAATTTCTAA+TGG | - | chr7.2:4387262-4387281 | MS.gene072533:intron | 10.0% |
| !! | ATACTTTAGTATCTTATTAA+TGG | - | chr7.2:4387083-4387102 | MS.gene072533:intron | 15.0% |
| !! | ATATAGTATACAATATATCT+AGG | - | chr7.2:4388151-4388170 | MS.gene072533:intron | 15.0% |
| !! | GAAAAAAAAAACTAATCAAA+AGG | - | chr7.2:4387480-4387499 | MS.gene072533:intron | 15.0% |
| !!! | ATTTGTTTTAGTTCTATAAA+TGG | - | chr7.2:4388504-4388523 | MS.gene072533:CDS | 15.0% |
| !!! | GAGTTTATTTAAAACTTATT+TGG | + | chr7.2:4387750-4387769 | None:intergenic | 15.0% |
| !! | TCATCTTTAGTTATAAAGAT+AGG | + | chr7.2:4387570-4387589 | None:intergenic | 20.0% |
| !! | TTATAACTAAAGATGAAATG+TGG | - | chr7.2:4387574-4387593 | MS.gene072533:intron | 20.0% |
| !!! | AAGTTTTAAGTTGTTTTGAT+AGG | - | chr7.2:4387613-4387632 | MS.gene072533:intron | 20.0% |
| !!! | TTCATGTTTCTTCAATTTTA+TGG | - | chr7.2:4388536-4388555 | MS.gene072533:CDS | 20.0% |
| ! | ACTTATTTGGACTTAACTTA+TGG | + | chr7.2:4387737-4387756 | None:intergenic | 25.0% |
| ! | AGCAGAAATATATTATGCAA+AGG | - | chr7.2:4387414-4387433 | MS.gene072533:intron | 25.0% |
| ! | ATCAAGATAAATGTAAGACA+AGG | + | chr7.2:4388252-4388271 | None:intergenic | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | + | chr7.2:4387854-4387873 | None:intergenic | 25.0% |
| ! | TAACTACAATCTCATACAAA+GGG | + | chr7.2:4388617-4388636 | None:intergenic | 25.0% |
| ! | TAAGATACTAAAGTATACCT+TGG | + | chr7.2:4387079-4387098 | None:intergenic | 25.0% |
| ! | TACAATATAATACCAAGCAA+AGG | - | chr7.2:4388885-4388904 | MS.gene072533:CDS | 25.0% |
| ! | TATGTACATAGCAACAAATA+TGG | + | chr7.2:4388447-4388466 | None:intergenic | 25.0% |
| ! | TCAAATCCATAGACATAAAA+AGG | + | chr7.2:4388647-4388666 | None:intergenic | 25.0% |
| ! | TGTTATTAAGGTTGAATTGT+TGG | - | chr7.2:4387337-4387356 | MS.gene072533:intron | 25.0% |
| ! | TTGCTATGTACATAACTAAA+TGG | - | chr7.2:4388453-4388472 | MS.gene072533:intron | 25.0% |
| !! | AAGTTGGAGAGTATAAAAAA+GGG | - | chr7.2:4387040-4387059 | MS.gene072533:intron | 25.0% |
| !! | ACTTCTTGTTATAAAGAAGT+TGG | - | chr7.2:4387024-4387043 | MS.gene072533:intron | 25.0% |
| !! | ATGGATAACAACACATATTT+TGG | - | chr7.2:4388555-4388574 | MS.gene072533:CDS | 25.0% |
| !! | CTTTAGCATAATTGTTTTCA+AGG | + | chr7.2:4388479-4388498 | None:intergenic | 25.0% |
| !! | TATAGAATTTCTAATGGACA+TGG | - | chr7.2:4387268-4387287 | MS.gene072533:intron | 25.0% |
| !! | TGAATTGTTGGCTAAATTAA+AGG | - | chr7.2:4387349-4387368 | MS.gene072533:intron | 25.0% |
| !! | TGTAAACCTTTTTATGTCTA+TGG | - | chr7.2:4388638-4388657 | MS.gene072533:CDS | 25.0% |
| !!! | AATTTGCTGATGCTATTAAA+TGG | - | chr7.2:4386929-4386948 | MS.gene072533:intron | 25.0% |
| !!! | ATCTTCTGAAATTGATGATT+GGG | - | chr7.2:4386774-4386793 | MS.gene072533:CDS | 25.0% |
| !!! | GATTTTTTATAGTGGAAGTT+TGG | - | chr7.2:4388747-4388766 | MS.gene072533:CDS | 25.0% |
| AAAGTATACCTTGGTACAAT+CGG | + | chr7.2:4387070-4387089 | None:intergenic | 30.0% | |
| AACAGACTATCAGATACATA+TGG | - | chr7.2:4388095-4388114 | MS.gene072533:intron | 30.0% | |
| ACTAATCAAAAGGCTATCAT+AGG | - | chr7.2:4387490-4387509 | MS.gene072533:intron | 30.0% | |
| AGCACTACACTAATTAGAAA+CGG | + | chr7.2:4387804-4387823 | None:intergenic | 30.0% | |
| ATCAGTAATTCACCATGTAA+TGG | - | chr7.2:4388407-4388426 | MS.gene072533:intron | 30.0% | |
| ATGCTATTAAATGGCTTTCA+TGG | - | chr7.2:4386938-4386957 | MS.gene072533:intron | 30.0% | |
| CATGTATCAGTAAATGTTGT+TGG | - | chr7.2:4388200-4388219 | MS.gene072533:intron | 30.0% | |
| CTAACTACAATCTCATACAA+AGG | + | chr7.2:4388618-4388637 | None:intergenic | 30.0% | |
| GATACATATGGTATCCAATT+TGG | - | chr7.2:4388107-4388126 | MS.gene072533:intron | 30.0% | |
| GATGTGAAAAACATATCCAT+TGG | + | chr7.2:4386709-4386728 | None:intergenic | 30.0% | |
| GATTACACATGTTATACTCA+GGG | + | chr7.2:4388287-4388306 | None:intergenic | 30.0% | |
| GCTTGAAAGATTAAGATGAA+TGG | - | chr7.2:4388322-4388341 | MS.gene072533:intron | 30.0% | |
| TATAATACCAAGCAAAGGTT+CGG | - | chr7.2:4388890-4388909 | MS.gene072533:CDS | 30.0% | |
| TGATTACACATGTTATACTC+AGG | + | chr7.2:4388288-4388307 | None:intergenic | 30.0% | |
| TGCTATTAAATGGCTTTCAT+GGG | - | chr7.2:4386939-4386958 | MS.gene072533:intron | 30.0% | |
| TTACACATACTATAGCTGTT+TGG | + | chr7.2:4388077-4388096 | None:intergenic | 30.0% | |
| TTCAAATTGCTATCTTCACA+TGG | + | chr7.2:4388593-4388612 | None:intergenic | 30.0% | |
| TTCAACCTTAATAACACAGT+TGG | + | chr7.2:4387333-4387352 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | + | chr7.2:4387164-4387183 | None:intergenic | 30.0% | |
| ! | ACATACCAACTGTGTTATTA+AGG | - | chr7.2:4387325-4387344 | MS.gene072533:intron | 30.0% |
| ! | AGTTGGAGAGTATAAAAAAG+GGG | - | chr7.2:4387041-4387060 | MS.gene072533:intron | 30.0% |
| ! | ATTTGATGATCTTCATCATG+TGG | + | chr7.2:4388920-4388939 | None:intergenic | 30.0% |
| ! | GAAGTTGGAGAGTATAAAAA+AGG | - | chr7.2:4387039-4387058 | MS.gene072533:intron | 30.0% |
| ! | TAATGGACATGGAACTTATA+TGG | - | chr7.2:4387279-4387298 | MS.gene072533:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr7.2:4387858-4387877 | MS.gene072533:intron | 30.0% |
| ! | TTATTCTTCTAGAGAAAGCT+GGG | - | chr7.2:4386965-4386984 | MS.gene072533:intron | 30.0% |
| ! | TTGTTGGCTAAATTAAAGGA+TGG | - | chr7.2:4387353-4387372 | MS.gene072533:intron | 30.0% |
| !! | AACAACACATATTTTGGACT+GGG | - | chr7.2:4388561-4388580 | MS.gene072533:CDS | 30.0% |
| !! | CATCTTCTGAAATTGATGAT+TGG | - | chr7.2:4386773-4386792 | MS.gene072533:CDS | 30.0% |
| !! | GAATAGTTGTTTCTCCAAAT+TGG | + | chr7.2:4388124-4388143 | None:intergenic | 30.0% |
| !! | TAACAACACATATTTTGGAC+TGG | - | chr7.2:4388560-4388579 | MS.gene072533:CDS | 30.0% |
| !! | TCTTCTGAAATTGATGATTG+GGG | - | chr7.2:4386775-4386794 | MS.gene072533:CDS | 30.0% |
| !!! | CAGTTCGTGATTTTTTATAG+TGG | - | chr7.2:4388739-4388758 | MS.gene072533:CDS | 30.0% |
| !!! | GGAATTGATGTTGATTTTAC+TGG | - | chr7.2:4386634-4386653 | MS.gene072533:CDS | 30.0% |
| !!! | GGATGGTTTTGCATTTTTTT+TGG | - | chr7.2:4387370-4387389 | MS.gene072533:intron | 30.0% |
| !!! | TGGTTTTGCATTTTTTTTGG+AGG | - | chr7.2:4387373-4387392 | MS.gene072533:intron | 30.0% |
| !!! | TGTTGATTTTACTGGATCTT+CGG | - | chr7.2:4386642-4386661 | MS.gene072533:CDS | 30.0% |
| !!! | TTTGCATTTTTTTTGGAGGT+GGG | - | chr7.2:4387377-4387396 | MS.gene072533:intron | 30.0% |
| !!! | TTTTGCATTTTTTTTGGAGG+TGG | - | chr7.2:4387376-4387395 | MS.gene072533:intron | 30.0% |
| AACTGGTGCGTTTCAATTTA+TGG | - | chr7.2:4387965-4387984 | MS.gene072533:intron | 35.0% | |
| AAGCCTAAATATGGAACTCA+TGG | + | chr7.2:4388353-4388372 | None:intergenic | 35.0% | |
| AGCAACAAATATGGAACTCA+TGG | + | chr7.2:4388438-4388457 | None:intergenic | 35.0% | |
| AGGGATGGATAATTACAAAC+AGG | - | chr7.2:4386903-4386922 | MS.gene072533:intron | 35.0% | |
| AGTCCATGAGTTCCATATTT+AGG | - | chr7.2:4388347-4388366 | MS.gene072533:intron | 35.0% | |
| AGTGGAAGTTTGGATTCTTA+TGG | - | chr7.2:4388757-4388776 | MS.gene072533:CDS | 35.0% | |
| ATAATACCAAGCAAAGGTTC+GGG | - | chr7.2:4388891-4388910 | MS.gene072533:CDS | 35.0% | |
| ATATCAGGTTCTTCTGCTAA+AGG | - | chr7.2:4386877-4386896 | MS.gene072533:intron | 35.0% | |
| ATATCTACGAATCACAGACA+CGG | + | chr7.2:4387244-4387263 | None:intergenic | 35.0% | |
| ATTTATCTTGATTGACACCC+TGG | - | chr7.2:4388260-4388279 | MS.gene072533:intron | 35.0% | |
| CTACAATATTGTCGTAGCTT+GGG | - | chr7.2:4388857-4388876 | MS.gene072533:CDS | 35.0% | |
| GGGATGGATAATTACAAACA+GGG | - | chr7.2:4386904-4386923 | MS.gene072533:intron | 35.0% | |
| GTAGATCTTCATCAGAGAAT+AGG | + | chr7.2:4388841-4388860 | None:intergenic | 35.0% | |
| TACTGATCAAGAAATCAGTG+TGG | + | chr7.2:4388394-4388413 | None:intergenic | 35.0% | |
| TCTACAATATTGTCGTAGCT+TGG | - | chr7.2:4388856-4388875 | MS.gene072533:CDS | 35.0% | |
| TGAGAAAGGAAGCCTAAATA+TGG | + | chr7.2:4388362-4388381 | None:intergenic | 35.0% | |
| TTTATCTTGATTGACACCCT+GGG | - | chr7.2:4388261-4388280 | MS.gene072533:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr7.2:4387838-4387857 | MS.gene072533:intron | 35.0% |
| ! | CTTATTCTTCTAGAGAAAGC+TGG | - | chr7.2:4386964-4386983 | MS.gene072533:intron | 35.0% |
| ! | TATTCTTCTAGAGAAAGCTG+GGG | - | chr7.2:4386966-4386985 | MS.gene072533:intron | 35.0% |
| ! | TGTTGTTGTTGCATGTTTCT+AGG | - | chr7.2:4387942-4387961 | MS.gene072533:intron | 35.0% |
| !!! | TTGCATTTTTTTTGGAGGTG+GGG | - | chr7.2:4387378-4387397 | MS.gene072533:intron | 35.0% |
| ACCACTTGATGGAAATGGAT+GGG | + | chr7.2:4386605-4386624 | None:intergenic | 40.0% | |
| GTTCTTCTGCTAAAGGCAAA+GGG | - | chr7.2:4386884-4386903 | MS.gene072533:intron | 40.0% | |
| TGGTGTATAACAGTTCGTGA+TGG | - | chr7.2:4388777-4388796 | MS.gene072533:CDS | 40.0% | |
| TGTATAACAGTTCGTGATGG+AGG | - | chr7.2:4388780-4388799 | MS.gene072533:CDS | 40.0% | |
| ! | CGTGATGGAGGTAAAAAAGA+AGG | - | chr7.2:4388792-4388811 | MS.gene072533:CDS | 40.0% |
| ! | GTTTCTAGAGGTCAATGAGT+TGG | - | chr7.2:4387826-4387845 | MS.gene072533:intron | 40.0% |
| ! | TGGAGAGTATAAAAAAGGGG+TGG | - | chr7.2:4387044-4387063 | MS.gene072533:intron | 40.0% |
| !! | GTGTAGTGCTATGTTTCTAG+AGG | - | chr7.2:4387814-4387833 | MS.gene072533:intron | 40.0% |
| !! | TGTTGCATGTTTCTAGGAAC+TGG | - | chr7.2:4387948-4387967 | MS.gene072533:intron | 40.0% |
| !!! | TGCATTTTTTTTGGAGGTGG+GGG | - | chr7.2:4387379-4387398 | MS.gene072533:intron | 40.0% |
| AACACCAGTTCAAGCTTCTG+GGG | - | chr7.2:4386678-4386697 | MS.gene072533:CDS | 45.0% | |
| ACATCTACCACTCCATCATC+TGG | - | chr7.2:4386724-4386743 | MS.gene072533:intron | 45.0% | |
| ACGGCTTCCTTAAGCCATTA+TGG | + | chr7.2:4387785-4387804 | None:intergenic | 45.0% | |
| CAACACCAGTTCAAGCTTCT+GGG | - | chr7.2:4386677-4386696 | MS.gene072533:CDS | 45.0% | |
| CACCACTTGATGGAAATGGA+TGG | + | chr7.2:4386606-4386625 | None:intergenic | 45.0% | |
| CATCCATTTCCATCAAGTGG+TGG | - | chr7.2:4386604-4386623 | MS.gene072533:CDS | 45.0% | |
| CGGCTTCCTTAAGCCATTAT+GGG | + | chr7.2:4387784-4387803 | None:intergenic | 45.0% | |
| CTACCACCACTTGATGGAAA+TGG | + | chr7.2:4386610-4386629 | None:intergenic | 45.0% | |
| GAGGAAACCATGATGTTGGT+GGG | - | chr7.2:4386812-4386831 | MS.gene072533:intron | 45.0% | |
| GCTTCCTTAAGCCATTATGG+GGG | + | chr7.2:4387782-4387801 | None:intergenic | 45.0% | |
| GGCTTCCTTAAGCCATTATG+GGG | + | chr7.2:4387783-4387802 | None:intergenic | 45.0% | |
| GGTTCTTCTGCTAAAGGCAA+AGG | - | chr7.2:4386883-4386902 | MS.gene072533:intron | 45.0% | |
| TCCCATCCATTTCCATCAAG+TGG | - | chr7.2:4386601-4386620 | MS.gene072533:CDS | 45.0% | |
| TTCTGCTAAAGGCAAAGGGA+TGG | - | chr7.2:4386888-4386907 | MS.gene072533:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr7.2:4387907-4387926 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr7.2:4387908-4387927 | None:intergenic | 45.0% |
| !! | CTCATGGACTAGCCATTACA+TGG | + | chr7.2:4388422-4388441 | None:intergenic | 45.0% |
| !! | GATGATTGGGGTACTGAGTT+TGG | - | chr7.2:4386787-4386806 | MS.gene072533:CDS | 45.0% |
| !!! | TTTTTTTGGAGGTGGGGGTT+GGG | - | chr7.2:4387384-4387403 | MS.gene072533:intron | 45.0% |
| !!! | TTTTTTTTGGAGGTGGGGGT+TGG | - | chr7.2:4387383-4387402 | MS.gene072533:intron | 45.0% |
| AACGCCCCCATAATGGCTTA+AGG | - | chr7.2:4387775-4387794 | MS.gene072533:intron | 50.0% | |
| ACACCAGTTCAAGCTTCTGG+GGG | - | chr7.2:4386679-4386698 | MS.gene072533:CDS | 50.0% | |
| ACATGTTATACTCAGGGCCC+AGG | + | chr7.2:4388281-4388300 | None:intergenic | 50.0% | |
| CATGTTATACTCAGGGCCCA+GGG | + | chr7.2:4388280-4388299 | None:intergenic | 50.0% | |
| CCAACACCAGTTCAAGCTTC+TGG | - | chr7.2:4386676-4386695 | MS.gene072533:CDS | 50.0% | |
| CCAACACTACCACCACTTGA+TGG | + | chr7.2:4386616-4386635 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr7.2:4387906-4387925 | MS.gene072533:intron | 50.0% | |
| CCAGAAGCTTGAACTGGTGT+TGG | + | chr7.2:4386679-4386698 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr7.2:4387903-4387922 | None:intergenic | 50.0% | |
| GAAGAACCTGATATCCCAGC+AGG | + | chr7.2:4386871-4386890 | None:intergenic | 50.0% | |
| GGACAACCACTGAGCTTGAT+GGG | - | chr7.2:4386833-4386852 | MS.gene072533:intron | 50.0% | |
| GGAGGAAACCATGATGTTGG+TGG | - | chr7.2:4386811-4386830 | MS.gene072533:intron | 50.0% | |
| GGAGGAGGAAACCATGATGT+TGG | - | chr7.2:4386808-4386827 | MS.gene072533:intron | 50.0% | |
| TCTACCACTCCATCATCTGG+AGG | - | chr7.2:4386727-4386746 | MS.gene072533:intron | 50.0% | |
| TCTTCCAAACGCCCCCATAA+TGG | - | chr7.2:4387768-4387787 | MS.gene072533:intron | 50.0% | |
| TGGATACCCGAACCTTTGCT+TGG | + | chr7.2:4388900-4388919 | None:intergenic | 50.0% | |
| TGGTTGTCCCACCAACATCA+TGG | + | chr7.2:4386822-4386841 | None:intergenic | 50.0% | |
| TGTGGTTGCGTTCGTGAGAA+AGG | + | chr7.2:4388376-4388395 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr7.2:4387909-4387928 | None:intergenic | 50.0% |
| ! | CCATCAAGTGGTGGTAGTGT+TGG | - | chr7.2:4386613-4386632 | MS.gene072533:CDS | 50.0% |
| ! | CTTCTAGAGAAAGCTGGGGA+TGG | - | chr7.2:4386970-4386989 | MS.gene072533:intron | 50.0% |
| ! | GAGTGAACACGGTTGATGCT+TGG | + | chr7.2:4388963-4388982 | None:intergenic | 50.0% |
| !! | GATTGGGGTACTGAGTTTGG+AGG | - | chr7.2:4386790-4386809 | MS.gene072533:CDS | 50.0% |
| !! | TAAGCCATTATGGGGGCGTT+TGG | + | chr7.2:4387775-4387794 | None:intergenic | 50.0% |
| !!! | TTTTTTGGAGGTGGGGGTTG+GGG | - | chr7.2:4387385-4387404 | MS.gene072533:intron | 50.0% |
| ACCACTCCATCATCTGGAGG+TGG | - | chr7.2:4386730-4386749 | MS.gene072533:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr7.2:4387895-4387914 | None:intergenic | 55.0% | |
| ACTCCATCATCTGGAGGTGG+TGG | - | chr7.2:4386733-4386752 | MS.gene072533:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr7.2:4387894-4387913 | MS.gene072533:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr7.2:4387901-4387920 | MS.gene072533:intron | 55.0% | |
| GAACCTGATATCCCAGCAGG+AGG | + | chr7.2:4386868-4386887 | None:intergenic | 55.0% | |
| GGGACAACCACTGAGCTTGA+TGG | - | chr7.2:4386832-4386851 | MS.gene072533:intron | 55.0% | |
| TCACCCCCAGAAGCTTGAAC+TGG | + | chr7.2:4386685-4386704 | None:intergenic | 55.0% | |
| TGGAAGCCCATCAAGCTCAG+TGG | + | chr7.2:4386842-4386861 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr7.2:4387895-4387914 | MS.gene072533:intron | 55.0% | |
| ! | AGCTTCTGGGGGTGATCCAA+TGG | - | chr7.2:4386690-4386709 | MS.gene072533:intron | 55.0% |
| !! | ACCACCTCCAGATGATGGAG+TGG | + | chr7.2:4386734-4386753 | None:intergenic | 55.0% |
| !! | TGGGGTACTGAGTTTGGAGG+AGG | - | chr7.2:4386793-4386812 | MS.gene072533:CDS | 55.0% |
| AGGGGTGGCCGATTGTACCA+AGG | - | chr7.2:4387059-4387078 | MS.gene072533:intron | 60.0% | |
| CCACCACCACCTCCAGATGA+TGG | + | chr7.2:4386739-4386758 | None:intergenic | 60.0% | |
| CCTCCTCCTGCTGGGATATC+AGG | - | chr7.2:4386862-4386881 | MS.gene072533:intron | 60.0% | |
| CCTGATATCCCAGCAGGAGG+AGG | + | chr7.2:4386865-4386884 | None:intergenic | 60.0% | |
| GAGAAAGCTGGGGATGGTGC+TGG | - | chr7.2:4386976-4386995 | MS.gene072533:intron | 60.0% | |
| GATATCCCAGCAGGAGGAGG+TGG | + | chr7.2:4386862-4386881 | None:intergenic | 60.0% | |
| ! | CCATCATCTGGAGGTGGTGG+TGG | - | chr7.2:4386736-4386755 | MS.gene072533:intron | 60.0% |
| !! | AGCTGGGGATGGTGCTGGTA+CGG | - | chr7.2:4386981-4387000 | MS.gene072533:intron | 60.0% |
| !! | TCATCTGGAGGTGGTGGTGG+TGG | - | chr7.2:4386739-4386758 | MS.gene072533:intron | 60.0% |
| GGCTTCCACCTCCTCCTGCT+GGG | - | chr7.2:4386854-4386873 | MS.gene072533:intron | 65.0% | |
| !! | AGGTGGTGGTGGTGGAGGTG+CGG | - | chr7.2:4386747-4386766 | MS.gene072533:intron | 65.0% |
| !! | GGATGGTGCTGGTACGGTGG+AGG | - | chr7.2:4386987-4387006 | MS.gene072533:intron | 65.0% |
| !! | TCTGGAGGTGGTGGTGGTGG+AGG | - | chr7.2:4386742-4386761 | MS.gene072533:intron | 65.0% |
| !! | TGGGGATGGTGCTGGTACGG+TGG | - | chr7.2:4386984-4387003 | MS.gene072533:intron | 65.0% |
| GGGCTTCCACCTCCTCCTGC+TGG | - | chr7.2:4386853-4386872 | MS.gene072533:intron | 70.0% | |
| !! | TGGTGGTGGTGGAGGTGCGG+CGG | - | chr7.2:4386750-4386769 | MS.gene072533:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4386586 | 4388988 | 4386586 | ID=MS.gene072533 |
| chr7.2 | mRNA | 4386586 | 4388988 | 4386586 | ID=MS.gene072533.t1;Parent=MS.gene072533 |
| chr7.2 | exon | 4388494 | 4388988 | 4388494 | ID=MS.gene072533.t1.exon1;Parent=MS.gene072533.t1 |
| chr7.2 | CDS | 4388494 | 4388988 | 4388494 | ID=cds.MS.gene072533.t1;Parent=MS.gene072533.t1 |
| chr7.2 | exon | 4386748 | 4386815 | 4386748 | ID=MS.gene072533.t1.exon2;Parent=MS.gene072533.t1 |
| chr7.2 | CDS | 4386748 | 4386815 | 4386748 | ID=cds.MS.gene072533.t1;Parent=MS.gene072533.t1 |
| chr7.2 | exon | 4386586 | 4386700 | 4386586 | ID=MS.gene072533.t1.exon3;Parent=MS.gene072533.t1 |
| chr7.2 | CDS | 4386586 | 4386700 | 4386586 | ID=cds.MS.gene072533.t1;Parent=MS.gene072533.t1 |
| Gene Sequence |
| Protein sequence |
