Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074442.t1 | XP_013444458.1 | 96.2 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 5.20E-129 | 470.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074442.t1 | Q9C5D7 | 63.7 | 226 | 81 | 1 | 10 | 235 | 8 | 232 | 1.0e-80 | 301.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074442.t1 | I3SHI5 | 96.2 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 3.7e-129 | 470.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26463 | MS.gene074442 | PPI |
| MS.gene074442 | MS.gene053539 | PPI |
| MS.gene35069 | MS.gene074442 | PPI |
| MS.gene028389 | MS.gene074442 | PPI |
| MS.gene059423 | MS.gene074442 | PPI |
| MS.gene053535 | MS.gene074442 | PPI |
| MS.gene28756 | MS.gene074442 | PPI |
| MS.gene047856 | MS.gene074442 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074442.t1 | MTR_8g021225 | 96.170 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 1.08e-170 | 469 |
| MS.gene074442.t1 | MTR_8g101900 | 73.362 | 229 | 60 | 1 | 5 | 233 | 6 | 233 | 2.20e-110 | 317 |
| MS.gene074442.t1 | MTR_6g091680 | 69.507 | 223 | 67 | 1 | 11 | 233 | 15 | 236 | 4.53e-104 | 301 |
| MS.gene074442.t1 | MTR_4g085590 | 58.850 | 226 | 93 | 0 | 8 | 233 | 20 | 245 | 5.14e-93 | 273 |
| MS.gene074442.t1 | MTR_4g094925 | 55.172 | 232 | 104 | 0 | 2 | 233 | 10 | 241 | 2.03e-92 | 271 |
| MS.gene074442.t1 | MTR_4g094815 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 2.61e-89 | 264 |
| MS.gene074442.t1 | MTR_4g094898 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 1.36e-81 | 244 |
| MS.gene074442.t1 | MTR_4g094812 | 56.579 | 228 | 99 | 0 | 8 | 235 | 19 | 246 | 1.97e-80 | 241 |
| MS.gene074442.t1 | MTR_4g094368 | 53.571 | 224 | 101 | 2 | 11 | 232 | 5 | 227 | 1.32e-78 | 236 |
| MS.gene074442.t1 | MTR_4g094925 | 54.229 | 201 | 92 | 0 | 33 | 233 | 10 | 210 | 8.45e-78 | 233 |
| MS.gene074442.t1 | MTR_4g094898 | 58.378 | 185 | 77 | 0 | 49 | 233 | 1 | 185 | 1.38e-67 | 206 |
| MS.gene074442.t1 | MTR_2g070410 | 40.553 | 217 | 119 | 4 | 17 | 233 | 91 | 297 | 3.86e-49 | 163 |
| MS.gene074442.t1 | MTR_2g070410 | 41.279 | 172 | 97 | 2 | 17 | 188 | 91 | 258 | 1.77e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074442.t1 | AT4G26220 | 63.717 | 226 | 81 | 1 | 10 | 235 | 8 | 232 | 5.05e-105 | 303 |
| MS.gene074442.t1 | AT4G34050 | 58.952 | 229 | 88 | 2 | 8 | 233 | 59 | 284 | 5.20e-94 | 277 |
| MS.gene074442.t1 | AT4G34050 | 58.952 | 229 | 88 | 2 | 8 | 233 | 32 | 257 | 5.70e-94 | 276 |
| MS.gene074442.t1 | AT1G67980 | 54.867 | 226 | 96 | 3 | 10 | 233 | 9 | 230 | 1.80e-79 | 238 |
| MS.gene074442.t1 | AT1G24735 | 54.185 | 227 | 98 | 5 | 10 | 233 | 15 | 238 | 2.13e-75 | 228 |
| MS.gene074442.t1 | AT1G67990 | 51.327 | 226 | 105 | 3 | 10 | 233 | 9 | 231 | 7.34e-72 | 219 |
| MS.gene074442.t1 | AT1G24735 | 44.245 | 278 | 98 | 5 | 10 | 233 | 15 | 289 | 1.64e-67 | 210 |
| MS.gene074442.t1 | AT1G24735 | 55.249 | 181 | 77 | 3 | 54 | 233 | 16 | 193 | 1.70e-63 | 196 |
| MS.gene074442.t1 | AT3G62000 | 38.537 | 205 | 119 | 3 | 29 | 233 | 80 | 277 | 1.44e-47 | 158 |
| MS.gene074442.t1 | AT3G61990 | 40.488 | 205 | 112 | 4 | 29 | 233 | 95 | 289 | 3.16e-47 | 158 |
| MS.gene074442.t1 | AT1G67980 | 48.485 | 165 | 81 | 2 | 69 | 233 | 2 | 162 | 1.57e-45 | 149 |
| MS.gene074442.t1 | AT4G34050 | 55.200 | 125 | 50 | 2 | 112 | 233 | 25 | 146 | 3.63e-41 | 138 |
| MS.gene074442.t1 | AT3G62000 | 36.923 | 195 | 116 | 3 | 29 | 223 | 80 | 267 | 9.00e-40 | 140 |
Find 44 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGTTAA+TGG | 0.191047 | 8.2:+73796294 | MS.gene074442:CDS |
| CAGAGACTCTCAAAGAATTA+AGG | 0.315684 | 8.2:+73795595 | MS.gene074442:CDS |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8.2:+73796264 | MS.gene074442:intron |
| CTTAATTCTTTGAGAGTCTC+TGG | 0.339959 | 8.2:-73795594 | None:intergenic |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8.2:+73798707 | MS.gene074442:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8.2:+73798777 | MS.gene074442:CDS |
| CCCATTAACTGACCCGCATC+AGG | 0.360505 | 8.2:-73796295 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8.2:+73798776 | MS.gene074442:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8.2:-73798097 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8.2:+73797982 | MS.gene074442:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8.2:-73796406 | None:intergenic |
| CCTGATGCGGGTCAGTTAAT+GGG | 0.422080 | 8.2:+73796295 | MS.gene074442:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8.2:+73798929 | MS.gene074442:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8.2:+73798907 | MS.gene074442:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8.2:-73798817 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8.2:-73798088 | None:intergenic |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8.2:+73796394 | MS.gene074442:CDS |
| TTGAGAGTCTCTGGTTCTCG+TGG | 0.512434 | 8.2:-73795585 | None:intergenic |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8.2:+73798794 | MS.gene074442:CDS |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8.2:+73798913 | MS.gene074442:CDS |
| ATGGGCACTCACCCTGATGC+GGG | 0.527395 | 8.2:+73796283 | MS.gene074442:CDS |
| CTGATTAAACTGATTAAGAC+TGG | 0.528934 | 8.2:+73798745 | MS.gene074442:CDS |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8.2:-73798791 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8.2:+73796265 | MS.gene074442:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8.2:+73796399 | MS.gene074442:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8.2:+73798821 | MS.gene074442:CDS |
| CATGGGCACTCACCCTGATG+CGG | 0.547301 | 8.2:+73796282 | MS.gene074442:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8.2:+73795402 | MS.gene074442:CDS |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8.2:+73798778 | MS.gene074442:CDS |
| TCAGTTTAATCAGCCTCTCA+TGG | 0.551699 | 8.2:-73798735 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8.2:+73798010 | MS.gene074442:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8.2:-73798792 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8.2:+73795418 | MS.gene074442:CDS |
| TGAGAGTCTCTGGTTCTCGT+GGG | 0.576590 | 8.2:-73795584 | None:intergenic |
| TGGTTCTCGTGGGTAAACAC+TGG | 0.579304 | 8.2:-73795574 | None:intergenic |
| ATTAAACTGATTAAGACTGG+TGG | 0.589880 | 8.2:+73798748 | MS.gene074442:CDS |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8.2:+73798781 | MS.gene074442:CDS |
| CCATTAACTGACCCGCATCA+GGG | 0.619047 | 8.2:-73796294 | None:intergenic |
| ATTACTGGAATTACCATGAG+AGG | 0.622324 | 8.2:+73798722 | MS.gene074442:CDS |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8.2:-73798698 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8.2:+73795417 | MS.gene074442:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8.2:-73795622 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8.2:+73795431 | MS.gene074442:CDS |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.719153 | 8.2:-73796387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATAAATTATTTTATT+TGG | + | chr8.2:73795817-73795836 | MS.gene074442:intron | 0.0% |
| !! | TAAAAGAAATTAGTTAATAA+TGG | - | chr8.2:73795853-73795872 | None:intergenic | 10.0% |
| !! | TCATTATTATTACTTATATT+AGG | + | chr8.2:73796254-73796273 | MS.gene074442:intron | 10.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | + | chr8.2:73795480-73795499 | MS.gene074442:intron | 10.0% |
| !!! | ATTATTAACTAATTTCTTTT+AGG | + | chr8.2:73795852-73795871 | MS.gene074442:intron | 10.0% |
| !! | AATACATTAATTAAATGACA+TGG | - | chr8.2:73797294-73797313 | None:intergenic | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8.2:73798381-73798400 | MS.gene074442:intron | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8.2:73797726-73797745 | MS.gene074442:intron | 15.0% |
| !!! | AATTAGTTAATAATGGAAAA+AGG | - | chr8.2:73795846-73795865 | None:intergenic | 15.0% |
| !!! | ACAAGGTTAAATTTTTATTA+TGG | - | chr8.2:73796915-73796934 | None:intergenic | 15.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | + | chr8.2:73795457-73795476 | MS.gene074442:intron | 15.0% |
| !!! | TTAAATTTTTATTATGGTCT+TGG | - | chr8.2:73796909-73796928 | None:intergenic | 15.0% |
| !!! | TTAGTTTTTTGTTTTAGTTT+CGG | - | chr8.2:73796790-73796809 | None:intergenic | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8.2:73797048-73797067 | None:intergenic | 15.0% |
| !! | AAAGATATCATTCCTTTATA+TGG | - | chr8.2:73795945-73795964 | None:intergenic | 20.0% |
| !! | ATCATTAACATGTACATATT+TGG | - | chr8.2:73796938-73796957 | None:intergenic | 20.0% |
| !! | TACTTGCAATATAAATTCTA+GGG | - | chr8.2:73796207-73796226 | None:intergenic | 20.0% |
| !! | TCAAAATGTATGATGATTTA+AGG | - | chr8.2:73796043-73796062 | None:intergenic | 20.0% |
| !! | TTACTTGCAATATAAATTCT+AGG | - | chr8.2:73796208-73796227 | None:intergenic | 20.0% |
| !! | TTCAAAGATAACAATTATGA+TGG | - | chr8.2:73795744-73795763 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | - | chr8.2:73795546-73795565 | None:intergenic | 20.0% |
| !!! | TAAGCATTTTCCTTTTAAAA+AGG | + | chr8.2:73796662-73796681 | MS.gene074442:intron | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | + | chr8.2:73797738-73797757 | MS.gene074442:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8.2:73798673-73798692 | None:intergenic | 20.0% |
| !!! | TCTTTTTACCTTATTTTTCT+TGG | + | chr8.2:73797529-73797548 | MS.gene074442:intron | 20.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8.2:73798387-73798406 | MS.gene074442:intron | 25.0% |
| ! | AAAATTGAAATATGCAGTGT+AGG | - | chr8.2:73797621-73797640 | None:intergenic | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | - | chr8.2:73797898-73797917 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8.2:73796961-73796980 | None:intergenic | 25.0% |
| ! | AATTGTAGTAAAAGATTCTG+AGG | - | chr8.2:73798292-73798311 | None:intergenic | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | - | chr8.2:73795639-73795658 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8.2:73798707-73798726 | MS.gene074442:CDS | 25.0% |
| ! | ATTACTTTATCATACATGTG+TGG | + | chr8.2:73796141-73796160 | MS.gene074442:intron | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | + | chr8.2:73795930-73795949 | MS.gene074442:intron | 25.0% |
| ! | CACAATTATGTCAAAAAGTA+AGG | + | chr8.2:73795660-73795679 | MS.gene074442:intron | 25.0% |
| ! | CATAATCTAATTGAAATGCA+GGG | - | chr8.2:73795916-73795935 | None:intergenic | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8.2:73797540-73797559 | None:intergenic | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8.2:73798553-73798572 | MS.gene074442:intron | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8.2:73796340-73796359 | MS.gene074442:CDS | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | - | chr8.2:73795638-73795657 | None:intergenic | 25.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | - | chr8.2:73795451-73795470 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8.2:73798148-73798167 | None:intergenic | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8.2:73797807-73797826 | MS.gene074442:intron | 25.0% |
| !! | AGAATCTTTTACTACAATTG+TGG | + | chr8.2:73798293-73798312 | MS.gene074442:intron | 25.0% |
| !! | ATCTCTTTGACCTTTTTAAA+AGG | - | chr8.2:73796675-73796694 | None:intergenic | 25.0% |
| !!! | ATTTCTAGTGGAAACAAATT+TGG | - | chr8.2:73797253-73797272 | None:intergenic | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8.2:73797565-73797584 | MS.gene074442:intron | 25.0% |
| AACATGTACATATTTGGACA+AGG | - | chr8.2:73796932-73796951 | None:intergenic | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | + | chr8.2:73795402-73795421 | MS.gene074442:CDS | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8.2:73797563-73797582 | None:intergenic | 30.0% | |
| ACATTGCATAATATATGCAG+GGG | - | chr8.2:73797479-73797498 | None:intergenic | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | + | chr8.2:73796265-73796284 | MS.gene074442:intron | 30.0% | |
| AGAAAAATACACATGGATGT+CGG | - | chr8.2:73796444-73796463 | None:intergenic | 30.0% | |
| AGACATTGCATAATATATGC+AGG | - | chr8.2:73797481-73797500 | None:intergenic | 30.0% | |
| AGCAAAACAAACATAGTAGA+AGG | + | chr8.2:73796700-73796719 | MS.gene074442:intron | 30.0% | |
| AGCAAATGGTCATAGTAATT+CGG | + | chr8.2:73797198-73797217 | MS.gene074442:intron | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8.2:73798030-73798049 | MS.gene074442:CDS | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8.2:73798836-73798855 | MS.gene074442:CDS | 30.0% | |
| ATGTTTATCAGCATCAACAA+AGG | - | chr8.2:73798701-73798720 | None:intergenic | 30.0% | |
| ATTAAACTGATTAAGACTGG+TGG | + | chr8.2:73798748-73798767 | MS.gene074442:CDS | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | + | chr8.2:73797442-73797461 | MS.gene074442:intron | 30.0% | |
| CTGATTAAACTGATTAAGAC+TGG | + | chr8.2:73798745-73798764 | MS.gene074442:CDS | 30.0% | |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8.2:73798907-73798926 | MS.gene074442:CDS | 30.0% | |
| GAAGACACTAAAATTAGAGA+TGG | - | chr8.2:73798587-73798606 | None:intergenic | 30.0% | |
| GACATTGCATAATATATGCA+GGG | - | chr8.2:73797480-73797499 | None:intergenic | 30.0% | |
| GACCATTTGCTCATATAAAT+CGG | - | chr8.2:73797189-73797208 | None:intergenic | 30.0% | |
| GCATAATCTAATTGAAATGC+AGG | - | chr8.2:73795917-73795936 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | + | chr8.2:73796264-73796283 | MS.gene074442:intron | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8.2:73798777-73798796 | MS.gene074442:CDS | 30.0% | |
| TCGTACAAGAAAAATACACA+TGG | - | chr8.2:73796451-73796470 | None:intergenic | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | - | chr8.2:73798100-73798119 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8.2:73798776-73798795 | MS.gene074442:CDS | 30.0% | |
| TTGGATCAAGTTCAAATCTA+GGG | - | chr8.2:73796890-73796909 | None:intergenic | 30.0% | |
| ! | AGAGATGGATAATTTTCCTT+TGG | - | chr8.2:73798572-73798591 | None:intergenic | 30.0% |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8.2:73796352-73796371 | MS.gene074442:CDS | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8.2:73798551-73798570 | None:intergenic | 30.0% |
| ! | TATCATACATGTGTGGTTTT+GGG | + | chr8.2:73796148-73796167 | MS.gene074442:intron | 30.0% |
| ! | TTATCATACATGTGTGGTTT+TGG | + | chr8.2:73796147-73796166 | MS.gene074442:intron | 30.0% |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8.2:73796965-73796984 | MS.gene074442:intron | 30.0% |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8.2:73798144-73798163 | MS.gene074442:intron | 30.0% |
| !! | GGGATTTTCATTTGATTTTC+AGG | - | chr8.2:73796869-73796888 | None:intergenic | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8.2:73798599-73798618 | MS.gene074442:intron | 30.0% |
| !! | TTTCATTTGATTTTCAGGAG+TGG | - | chr8.2:73796864-73796883 | None:intergenic | 30.0% |
| !!! | ATGCCTTATTTTTTTTCTCC+TGG | - | chr8.2:73798842-73798861 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | - | chr8.2:73796787-73796806 | None:intergenic | 30.0% |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8.2:73798841-73798860 | None:intergenic | 30.0% |
| AAACCTTGCATAATATACGC+AGG | - | chr8.2:73797441-73797460 | None:intergenic | 35.0% | |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8.2:73797826-73797845 | MS.gene074442:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | + | chr8.2:73797435-73797454 | MS.gene074442:intron | 35.0% | |
| ACATTACGAAGGTTTATTGC+CGG | - | chr8.2:73796567-73796586 | None:intergenic | 35.0% | |
| ACCTCACTTATTCACCTAAA+AGG | - | chr8.2:73797582-73797601 | None:intergenic | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | - | chr8.2:73796833-73796852 | None:intergenic | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | - | chr8.2:73797894-73797913 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8.2:73798778-73798797 | MS.gene074442:CDS | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | + | chr8.2:73795418-73795437 | MS.gene074442:CDS | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8.2:73798722-73798741 | MS.gene074442:CDS | 35.0% | |
| CAAATGGTCATAGTAATTCG+GGG | + | chr8.2:73797200-73797219 | MS.gene074442:intron | 35.0% | |
| CAGAGACTCTCAAAGAATTA+AGG | + | chr8.2:73795595-73795614 | MS.gene074442:CDS | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8.2:73798614-73798633 | MS.gene074442:intron | 35.0% | |
| CTCCGATTTATATGAGCAAA+TGG | + | chr8.2:73797184-73797203 | MS.gene074442:intron | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8.2:73798034-73798053 | MS.gene074442:CDS | 35.0% | |
| CTTGGATCAAGTTCAAATCT+AGG | - | chr8.2:73796891-73796910 | None:intergenic | 35.0% | |
| GAACCAATTACATCTCATAC+TGG | + | chr8.2:73796541-73796560 | MS.gene074442:intron | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8.2:73797953-73797972 | None:intergenic | 35.0% | |
| GATCTACAACAACCATACAA+TGG | - | chr8.2:73797975-73797994 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8.2:73798237-73798256 | MS.gene074442:intron | 35.0% | |
| GCAAATGGTCATAGTAATTC+GGG | + | chr8.2:73797199-73797218 | MS.gene074442:intron | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | + | chr8.2:73797960-73797979 | MS.gene074442:intron | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8.2:73798929-73798948 | MS.gene074442:CDS | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8.2:73797982-73798001 | MS.gene074442:intron | 35.0% | |
| TATGATGGTATATTGCAGAG+TGG | + | chr8.2:73795417-73795436 | MS.gene074442:CDS | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | - | chr8.2:73797910-73797929 | None:intergenic | 35.0% | |
| TGGATCAAGTTCAAATCTAG+GGG | - | chr8.2:73796889-73796908 | None:intergenic | 35.0% | |
| TTATCAAGAACTGGTAAAGC+TGG | - | chr8.2:73798091-73798110 | None:intergenic | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | + | chr8.2:73797259-73797278 | MS.gene074442:intron | 35.0% | |
| ! | CTTAATTCTTTGAGAGTCTC+TGG | - | chr8.2:73795597-73795616 | None:intergenic | 35.0% |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8.2:73798015-73798034 | None:intergenic | 35.0% |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | + | chr8.2:73797578-73797597 | MS.gene074442:intron | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8.2:73796399-73796418 | MS.gene074442:CDS | 35.0% |
| !! | TGCAATATAAATTCTAGGGC+TGG | - | chr8.2:73796203-73796222 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8.2:73798040-73798059 | None:intergenic | 35.0% |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8.2:73798195-73798214 | MS.gene074442:intron | 40.0% | |
| AACTTGAAGTACAAGCTGCA+TGG | + | chr8.2:73796077-73796096 | MS.gene074442:intron | 40.0% | |
| AGGTCCAACCTCTTAAATCA+AGG | - | chr8.2:73795886-73795905 | None:intergenic | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8.2:73796409-73796428 | None:intergenic | 40.0% | |
| CAACCCTTGATTTAAGAGGT+TGG | + | chr8.2:73795879-73795898 | MS.gene074442:intron | 40.0% | |
| CAATTACATCTCATACTGGC+CGG | + | chr8.2:73796545-73796564 | MS.gene074442:intron | 40.0% | |
| CTCTCAACCCTTGATTTAAG+AGG | + | chr8.2:73795875-73795894 | MS.gene074442:intron | 40.0% | |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8.2:73798010-73798029 | MS.gene074442:CDS | 40.0% | |
| GCAATTGAAACACTACAACG+AGG | - | chr8.2:73796590-73796609 | None:intergenic | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | + | chr8.2:73796394-73796413 | MS.gene074442:CDS | 40.0% | |
| GCCACTTCTAAACATCTAAG+AGG | + | chr8.2:73796829-73796848 | MS.gene074442:intron | 40.0% | |
| GGTCCAACCTCTTAAATCAA+GGG | - | chr8.2:73795885-73795904 | None:intergenic | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8.2:73798540-73798559 | None:intergenic | 40.0% | |
| TCAGTTTAATCAGCCTCTCA+TGG | - | chr8.2:73798738-73798757 | None:intergenic | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8.2:73797939-73797958 | MS.gene074442:intron | 40.0% | |
| TGGAAAATTGAACGGTTGGT+AGG | - | chr8.2:73797890-73797909 | None:intergenic | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8.2:73798913-73798932 | MS.gene074442:CDS | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | + | chr8.2:73797260-73797279 | MS.gene074442:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8.2:73798010-73798029 | None:intergenic | 40.0% |
| ! | AGATGTAATTGGTTCCACAG+CGG | - | chr8.2:73796536-73796555 | None:intergenic | 40.0% |
| ! | AGGTGAATAAGTGAGGTGTT+CGG | + | chr8.2:73797585-73797604 | MS.gene074442:intron | 40.0% |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8.2:73798207-73798226 | None:intergenic | 40.0% |
| !! | TAAATTCTAGGGCTGGACAT+CGG | - | chr8.2:73796196-73796215 | None:intergenic | 40.0% |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8.2:73798821-73798840 | MS.gene074442:CDS | 45.0% | |
| CGGCCAGTATGAGATGTAAT+TGG | - | chr8.2:73796547-73796566 | None:intergenic | 45.0% | |
| CTACAACGAGGACATTACGA+AGG | - | chr8.2:73796578-73796597 | None:intergenic | 45.0% | |
| GCATAATATATGCAGGGGCT+GGG | - | chr8.2:73797474-73797493 | None:intergenic | 45.0% | |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8.2:73798820-73798839 | None:intergenic | 45.0% | |
| GGTCATAGTAATTCGGGGTT+CGG | + | chr8.2:73797205-73797224 | MS.gene074442:intron | 45.0% | |
| TAGCGAGAAACACTACAACG+AGG | - | chr8.2:73796639-73796658 | None:intergenic | 45.0% | |
| TCTCGTGAGCTTAACTCAGT+TGG | - | chr8.2:73797507-73797526 | None:intergenic | 45.0% | |
| TGCATAATATATGCAGGGGC+TGG | - | chr8.2:73797475-73797494 | None:intergenic | 45.0% | |
| TTGAAATGCAGGGCGACTTA+AGG | - | chr8.2:73795906-73795925 | None:intergenic | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8.2:73796390-73796409 | None:intergenic | 45.0% |
| ! | GGTGAATAAGTGAGGTGTTC+GGG | + | chr8.2:73797586-73797605 | MS.gene074442:intron | 45.0% |
| ! | GTGAATAAGTGAGGTGTTCG+GGG | + | chr8.2:73797587-73797606 | MS.gene074442:intron | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8.2:73798781-73798800 | MS.gene074442:CDS | 45.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8.2:73798502-73798521 | MS.gene074442:intron | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8.2:73798795-73798814 | None:intergenic | 50.0% | |
| CCATTAACTGACCCGCATCA+GGG | - | chr8.2:73796297-73796316 | None:intergenic | 50.0% | |
| CCTGATGCGGGTCAGTTAAT+GGG | + | chr8.2:73796295-73796314 | MS.gene074442:CDS | 50.0% | |
| GCAGAGTGGGAATTTGACCA+AGG | + | chr8.2:73795431-73795450 | MS.gene074442:CDS | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8.2:73798524-73798543 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8.2:73798794-73798813 | None:intergenic | 50.0% | |
| TGGTTCTCGTGGGTAAACAC+TGG | - | chr8.2:73795577-73795596 | None:intergenic | 50.0% | |
| ! | AGCCCGAGTACGATTTCTAG+TGG | - | chr8.2:73797265-73797284 | None:intergenic | 50.0% |
| ! | GGTCGGTTTCAGTCGGAAAT+CGG | - | chr8.2:73796175-73796194 | None:intergenic | 50.0% |
| ! | GTACATAGGGTAGCTTGCAG+TGG | - | chr8.2:73795625-73795644 | None:intergenic | 50.0% |
| ! | TAGTAATTCGGGGTTCGGTC+AGG | + | chr8.2:73797210-73797229 | MS.gene074442:intron | 50.0% |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8.2:73798794-73798813 | MS.gene074442:CDS | 50.0% |
| !! | TGAGAGTCTCTGGTTCTCGT+GGG | - | chr8.2:73795587-73795606 | None:intergenic | 50.0% |
| !! | TTGAGAGTCTCTGGTTCTCG+TGG | - | chr8.2:73795588-73795607 | None:intergenic | 50.0% |
| AAACTCCTCGTGAACCGCTG+TGG | + | chr8.2:73796519-73796538 | MS.gene074442:intron | 55.0% | |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8.2:73798520-73798539 | MS.gene074442:intron | 55.0% | |
| CCCATTAACTGACCCGCATC+AGG | - | chr8.2:73796298-73796317 | None:intergenic | 55.0% | |
| CCCTGATGCGGGTCAGTTAA+TGG | + | chr8.2:73796294-73796313 | MS.gene074442:CDS | 55.0% | |
| ! | GGACATCGGTCGGTTTCAGT+CGG | - | chr8.2:73796182-73796201 | None:intergenic | 55.0% |
| !! | CAGCGATGCTATTTCTCGCG+AGG | + | chr8.2:73796485-73796504 | MS.gene074442:intron | 55.0% |
| !! | TTCTAGGGCTGGACATCGGT+CGG | - | chr8.2:73796192-73796211 | None:intergenic | 55.0% |
| ATGGGCACTCACCCTGATGC+GGG | + | chr8.2:73796283-73796302 | MS.gene074442:CDS | 60.0% | |
| CATGGGCACTCACCCTGATG+CGG | + | chr8.2:73796282-73796301 | MS.gene074442:CDS | 60.0% | |
| TGGTTCCACAGCGGTTCACG+AGG | - | chr8.2:73796527-73796546 | None:intergenic | 60.0% | |
| TGTCGTGTCCGACGTCGACA+CGG | - | chr8.2:73798490-73798509 | None:intergenic | 60.0% | |
| TGTCCGACGTCGACACGGCA+CGG | - | chr8.2:73798485-73798504 | None:intergenic | 65.0% | |
| ! | TGTCCGTGCCGTGTCGACGT+CGG | + | chr8.2:73798479-73798498 | MS.gene074442:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 73795396 | 73798963 | 73795396 | ID=MS.gene074442 |
| chr8.2 | mRNA | 73795396 | 73798963 | 73795396 | ID=MS.gene074442.t1;Parent=MS.gene074442 |
| chr8.2 | exon | 73795396 | 73795452 | 73795396 | ID=MS.gene074442.t1.exon1;Parent=MS.gene074442.t1 |
| chr8.2 | CDS | 73795396 | 73795452 | 73795396 | ID=cds.MS.gene074442.t1;Parent=MS.gene074442.t1 |
| chr8.2 | exon | 73795561 | 73795640 | 73795561 | ID=MS.gene074442.t1.exon2;Parent=MS.gene074442.t1 |
| chr8.2 | CDS | 73795561 | 73795640 | 73795561 | ID=cds.MS.gene074442.t1;Parent=MS.gene074442.t1 |
| chr8.2 | exon | 73796276 | 73796420 | 73796276 | ID=MS.gene074442.t1.exon3;Parent=MS.gene074442.t1 |
| chr8.2 | CDS | 73796276 | 73796420 | 73796276 | ID=cds.MS.gene074442.t1;Parent=MS.gene074442.t1 |
| chr8.2 | exon | 73797992 | 73798123 | 73797992 | ID=MS.gene074442.t1.exon4;Parent=MS.gene074442.t1 |
| chr8.2 | CDS | 73797992 | 73798123 | 73797992 | ID=cds.MS.gene074442.t1;Parent=MS.gene074442.t1 |
| chr8.2 | exon | 73798670 | 73798963 | 73798670 | ID=MS.gene074442.t1.exon5;Parent=MS.gene074442.t1 |
| chr8.2 | CDS | 73798670 | 73798963 | 73798670 | ID=cds.MS.gene074442.t1;Parent=MS.gene074442.t1 |
| Gene Sequence |
| Protein sequence |
