Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08420.t1 | XP_024637036.1 | 95.2 | 604 | 29 | 0 | 1 | 604 | 1 | 604 | 0.00E+00 | 1157.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08420.t1 | Q6AVI0 | 33.0 | 534 | 346 | 7 | 33 | 558 | 173 | 702 | 1.8e-86 | 321.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08420.t1 | A0A396IDQ4 | 95.2 | 604 | 29 | 0 | 1 | 604 | 1 | 604 | 0.0e+00 | 1157.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene08420 | 0.863415 | 2.53E-64 | -1.69E-46 |
| MS.gene050297 | MS.gene08420 | 0.835836 | 1.33E-56 | -1.69E-46 |
| MS.gene051629 | MS.gene08420 | 0.854917 | 8.94E-62 | -1.69E-46 |
| MS.gene051742 | MS.gene08420 | 0.80056 | 1.36E-48 | -1.69E-46 |
| MS.gene051955 | MS.gene08420 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene08420 | 0.869565 | 2.82E-66 | -1.69E-46 |
| MS.gene053416 | MS.gene08420 | 0.841529 | 4.50E-58 | -1.69E-46 |
| MS.gene053417 | MS.gene08420 | 0.841826 | 3.75E-58 | -1.69E-46 |
| MS.gene05369 | MS.gene08420 | 0.81577 | 7.80E-52 | -1.69E-46 |
| MS.gene055411 | MS.gene08420 | 0.819078 | 1.40E-52 | -1.69E-46 |
| MS.gene055578 | MS.gene08420 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene08420 | 0.80885 | 2.53E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene08420 | 0.844431 | 7.59E-59 | -1.69E-46 |
| MS.gene056526 | MS.gene08420 | 0.82025 | 7.57E-53 | -1.69E-46 |
| MS.gene05732 | MS.gene08420 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene058196 | MS.gene08420 | 0.819078 | 1.40E-52 | -1.69E-46 |
| MS.gene058197 | MS.gene08420 | 0.80257 | 5.27E-49 | -1.69E-46 |
| MS.gene058198 | MS.gene08420 | 0.810259 | 1.26E-50 | -1.69E-46 |
| MS.gene058827 | MS.gene08420 | 0.83427 | 3.30E-56 | -1.69E-46 |
| MS.gene058828 | MS.gene08420 | 0.801447 | 8.96E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene08420 | 0.820425 | 6.91E-53 | -1.69E-46 |
| MS.gene060473 | MS.gene08420 | 0.868948 | 4.46E-66 | -1.69E-46 |
| MS.gene060565 | MS.gene08420 | 0.861047 | 1.35E-63 | -1.69E-46 |
| MS.gene06057 | MS.gene08420 | 0.801175 | 1.02E-48 | -1.69E-46 |
| MS.gene061099 | MS.gene08420 | 0.814522 | 1.48E-51 | -1.69E-46 |
| MS.gene061260 | MS.gene08420 | 0.860851 | 1.55E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08420.t1 | AT3G42170 | 31.402 | 535 | 328 | 7 | 33 | 558 | 148 | 652 | 4.77e-89 | 290 |
| MS.gene08420.t1 | AT3G42170 | 31.402 | 535 | 328 | 7 | 33 | 558 | 170 | 674 | 9.68e-89 | 290 |
| MS.gene08420.t1 | AT1G18560 | 23.574 | 526 | 338 | 17 | 56 | 558 | 165 | 649 | 3.57e-25 | 110 |
Find 80 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGAGGTATAGCAATATT+TGG | 0.187929 | 4.1:-17836374 | None:intergenic |
| TGAGCAAGTTTGAGAAATAT+TGG | 0.282910 | 4.1:+17837275 | MS.gene08420:CDS |
| GGCTTATTGTTATTCAAAAC+TGG | 0.302168 | 4.1:+17837363 | MS.gene08420:CDS |
| AAAGATAAAGATATTCTATT+AGG | 0.313785 | 4.1:-17836473 | None:intergenic |
| CAACAGCTTGTTACCAAAAC+TGG | 0.316112 | 4.1:+17837685 | MS.gene08420:CDS |
| TTACTTAGATGAGTCAGTTT+TGG | 0.319382 | 4.1:+17837726 | MS.gene08420:CDS |
| ATGTTGGCAGTTTCACAAAA+AGG | 0.324708 | 4.1:-17837127 | None:intergenic |
| ATTTCCGGATCTATCAATAT+TGG | 0.329671 | 4.1:+17837807 | MS.gene08420:CDS |
| AAGTTGAGACTTTCCAGTTT+TGG | 0.333287 | 4.1:-17837698 | None:intergenic |
| GAGTAATAATGATCGATTTC+CGG | 0.338529 | 4.1:+17837792 | MS.gene08420:CDS |
| TCAAATTGATTCACGCTTTG+TGG | 0.339742 | 4.1:+17836262 | MS.gene08420:CDS |
| TAAGCCTCGATAACATTTCT+AGG | 0.352970 | 4.1:-17836392 | None:intergenic |
| TGAGGCATTCAAAGAGTAGA+AGG | 0.355821 | 4.1:+17836882 | MS.gene08420:CDS |
| ATGCTATTTGAGAAGTATTC+TGG | 0.356538 | 4.1:+17837436 | MS.gene08420:CDS |
| ATGTGTTCTAGTTGATAGTT+TGG | 0.358328 | 4.1:+17837210 | MS.gene08420:CDS |
| AGATGAAGATATAAAGAAAA+TGG | 0.366301 | 4.1:+17837240 | MS.gene08420:CDS |
| GGTTGAGTTGTTGAATGATT+GGG | 0.368263 | 4.1:+17836637 | MS.gene08420:CDS |
| ATTTAAGGAGTGCGTTGAAC+AGG | 0.385664 | 4.1:+17836910 | MS.gene08420:CDS |
| GTTAATTGATGTTTAAGCTT+AGG | 0.418332 | 4.1:-17836443 | None:intergenic |
| TATAGTGTCGTTCTTGCATT+GGG | 0.424715 | 4.1:+17837304 | MS.gene08420:CDS |
| GAGCAAGCTTCTAATGACTT+TGG | 0.429442 | 4.1:+17838215 | MS.gene08420:CDS |
| GAGCAAGTTTGAGAAATATT+GGG | 0.431072 | 4.1:+17837276 | MS.gene08420:CDS |
| GTAATGGCATGCTAGAAGAT+TGG | 0.432053 | 4.1:-17837507 | None:intergenic |
| GGTTGGTGGTGTTGATAGTT+CGG | 0.434477 | 4.1:+17836931 | MS.gene08420:CDS |
| TCTGGCAACAACACTTCTGC+TGG | 0.444439 | 4.1:+17837454 | MS.gene08420:CDS |
| GTCTCCGATGTCTCACGAAC+AGG | 0.445076 | 4.1:+17836088 | None:intergenic |
| TGGTTGAGTTGTTGAATGAT+TGG | 0.445907 | 4.1:+17836636 | MS.gene08420:CDS |
| TTGCTGTAGCTTCCTTTCAC+AGG | 0.452697 | 4.1:-17837395 | None:intergenic |
| TAGTTCGGTTCGCTTACATT+TGG | 0.454929 | 4.1:+17836946 | MS.gene08420:CDS |
| ATCAGAAGCTACGGTGGCAA+TGG | 0.457714 | 4.1:-17837851 | None:intergenic |
| TGTGTTCTAGTTGATAGTTT+GGG | 0.462965 | 4.1:+17837211 | MS.gene08420:CDS |
| TAGTTATGAATTATGTCCTT+CGG | 0.485944 | 4.1:+17837060 | MS.gene08420:CDS |
| TCAGAAGCTACGGTGGCAAT+GGG | 0.504779 | 4.1:-17837850 | None:intergenic |
| TGACAAATCTCACCACTAGT+AGG | 0.517300 | 4.1:-17836608 | None:intergenic |
| CAGGCCAATATTGATAGATC+CGG | 0.521638 | 4.1:-17837811 | None:intergenic |
| GAATTGGAAGTTAAATAGTA+AGG | 0.521677 | 4.1:+17836559 | MS.gene08420:CDS |
| CAAAATGGGTTGTTATGTGA+TGG | 0.523049 | 4.1:+17836749 | MS.gene08420:CDS |
| CTGGCAACAACACTTCTGCT+GGG | 0.527197 | 4.1:+17837455 | MS.gene08420:CDS |
| CTAGAATTTGTACTCGCAGT+TGG | 0.528677 | 4.1:+17837944 | MS.gene08420:CDS |
| AAATTAAAGTCTTTATCTCA+TGG | 0.532845 | 4.1:+17837535 | MS.gene08420:CDS |
| TTGAAAGAGCTCTTAAATAC+CGG | 0.537247 | 4.1:+17837005 | MS.gene08420:CDS |
| TGGTGAGATTTGTCAGAGAA+TGG | 0.537446 | 4.1:+17836616 | MS.gene08420:CDS |
| ATTCTAGCTTCCACATTCAT+CGG | 0.540479 | 4.1:-17837928 | None:intergenic |
| GTATAGTGTCGTTCTTGCAT+TGG | 0.543770 | 4.1:+17837303 | MS.gene08420:CDS |
| TAAAGATATTCTATTAGGAA+TGG | 0.545385 | 4.1:-17836468 | None:intergenic |
| CAAATCTCACCACTAGTAGG+AGG | 0.556810 | 4.1:-17836605 | None:intergenic |
| TGGGAGCGGTTCTTGACCCA+CGG | 0.559614 | 4.1:+17837323 | MS.gene08420:CDS |
| GTTGAGTTGTTGAATGATTG+GGG | 0.563887 | 4.1:+17836638 | MS.gene08420:CDS |
| CTTGTTTACCCTCCTACTAG+TGG | 0.565610 | 4.1:+17836596 | MS.gene08420:CDS |
| TATGTCCTTCGGCAGAAGAG+TGG | 0.576340 | 4.1:+17837071 | MS.gene08420:CDS |
| TGTCGTTCTTGCATTGGGAG+CGG | 0.576416 | 4.1:+17837309 | MS.gene08420:CDS |
| ATATAAAGAAAATGGCTGAA+AGG | 0.580537 | 4.1:+17837248 | MS.gene08420:CDS |
| AAGGAGTGCGTTGAACAGGT+TGG | 0.580671 | 4.1:+17836914 | MS.gene08420:CDS |
| TGTTGTGCTATTAATCATGT+TGG | 0.585834 | 4.1:-17837143 | None:intergenic |
| AAATTCAAAATCAGAAGCTA+CGG | 0.586576 | 4.1:-17837860 | None:intergenic |
| TGGATGCATCAACCTGTGAA+AGG | 0.589753 | 4.1:+17837383 | MS.gene08420:CDS |
| AACTATCAACTAGAACACAT+TGG | 0.591548 | 4.1:-17837207 | None:intergenic |
| AAGGTTGAAAACTTCATCCG+TGG | 0.593618 | 4.1:-17837340 | None:intergenic |
| TGGCAACAACACTTCTGCTG+GGG | 0.603497 | 4.1:+17837456 | MS.gene08420:CDS |
| TCATATGTTGCCGATGAATG+TGG | 0.604745 | 4.1:+17837918 | MS.gene08420:CDS |
| GAAAGGGCAAATCATGTGCA+AGG | 0.607899 | 4.1:-17836304 | None:intergenic |
| AAATGGATGTATTACAATGG+TGG | 0.610990 | 4.1:+17837767 | MS.gene08420:CDS |
| TTCAAAATCAGAAGCTACGG+TGG | 0.614303 | 4.1:-17837857 | None:intergenic |
| GGGAACACTTAACAAGTCGC+AGG | 0.614339 | 4.1:-17837830 | None:intergenic |
| AATACCTGTTCGTGAGACAT+CGG | 0.616720 | 4.1:-17836092 | None:intergenic |
| GAGTGCGTTGAACAGGTTGG+TGG | 0.617258 | 4.1:+17836917 | MS.gene08420:CDS |
| AATATTTGGATTTAAGAACT+CGG | 0.621104 | 4.1:-17836360 | None:intergenic |
| GAAAACTTTCGAACGCACAC+CGG | 0.621210 | 4.1:-17837024 | None:intergenic |
| GATGGAGAAGACGACGACGA+TGG | 0.621975 | 4.1:+17838149 | MS.gene08420:intron |
| GAGAGAGTATCATGTTTGTG+AGG | 0.628223 | 4.1:+17836864 | MS.gene08420:CDS |
| AAAGATAGAATTTGATAACG+AGG | 0.635017 | 4.1:+17836235 | MS.gene08420:CDS |
| AGGTTGAAAACTTCATCCGT+GGG | 0.636207 | 4.1:-17837339 | None:intergenic |
| ACCTCCTAGAAATGTTATCG+AGG | 0.637447 | 4.1:+17836388 | MS.gene08420:CDS |
| GAGGCATTCAAAGAGTAGAA+GGG | 0.641403 | 4.1:+17836883 | MS.gene08420:CDS |
| TAGTAGGAGGGTAAACAAGA+CGG | 0.651039 | 4.1:-17836592 | None:intergenic |
| AAATCTCACCACTAGTAGGA+GGG | 0.654396 | 4.1:-17836604 | None:intergenic |
| GCGTTAAAACTAGTTAGCTG+TGG | 0.661366 | 4.1:+17836827 | MS.gene08420:CDS |
| GCCTCGATAACATTTCTAGG+AGG | 0.669214 | 4.1:-17836389 | None:intergenic |
| CAGAAATGGATGTATTACAA+TGG | 0.706453 | 4.1:+17837764 | MS.gene08420:CDS |
| ATTCGCGTCAACAAAATGAG+CGG | 0.717347 | 4.1:-17836540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAGTTTTTATATATTTTT+TGG | + | chr4.1:17837568-17837587 | MS.gene08420:intron | 10.0% |
| !! | AAAGATAAAGATATTCTATT+AGG | - | chr4.1:17836476-17836495 | None:intergenic | 15.0% |
| !! | TATAAAAACTTACATCAAAT+AGG | - | chr4.1:17837561-17837580 | None:intergenic | 15.0% |
| !! | AAATTAAAGTCTTTATCTCA+TGG | + | chr4.1:17837535-17837554 | MS.gene08420:CDS | 20.0% |
| !! | AACTTGTAAAAAATACAAGT+TGG | - | chr4.1:17837179-17837198 | None:intergenic | 20.0% |
| !! | AATATTTGGATTTAAGAACT+CGG | - | chr4.1:17836363-17836382 | None:intergenic | 20.0% |
| !! | AGATGAAGATATAAAGAAAA+TGG | + | chr4.1:17837240-17837259 | MS.gene08420:CDS | 20.0% |
| !! | TAAAGATATTCTATTAGGAA+TGG | - | chr4.1:17836471-17836490 | None:intergenic | 20.0% |
| !! | TTAATAACTAAATTTACCCA+TGG | - | chr4.1:17838108-17838127 | None:intergenic | 20.0% |
| !!! | ACTTGTATTTTTTACAAGTT+TGG | + | chr4.1:17837179-17837198 | MS.gene08420:CDS | 20.0% |
| !!! | ATCTTTATCTTTTGATTTGT+GGG | + | chr4.1:17836484-17836503 | MS.gene08420:CDS | 20.0% |
| !!! | GACTTTAATTTCTTTTGTAA+TGG | - | chr4.1:17837526-17837545 | None:intergenic | 20.0% |
| !!! | TATCTTTATCTTTTGATTTG+TGG | + | chr4.1:17836483-17836502 | MS.gene08420:CDS | 20.0% |
| ! | AAATTCAAAATCAGAAGCTA+CGG | - | chr4.1:17837863-17837882 | None:intergenic | 25.0% |
| ! | AATCGACAATGATGAAAAAA+TGG | + | chr4.1:17838193-17838212 | MS.gene08420:CDS | 25.0% |
| ! | ATATAAAGAAAATGGCTGAA+AGG | + | chr4.1:17837248-17837267 | MS.gene08420:CDS | 25.0% |
| ! | ATTACATTTCACAAGTGAAA+AGG | - | chr4.1:17837645-17837664 | None:intergenic | 25.0% |
| ! | CTTCAATTATGATATGTAGA+TGG | + | chr4.1:17838131-17838150 | MS.gene08420:intron | 25.0% |
| ! | GAATTGGAAGTTAAATAGTA+AGG | + | chr4.1:17836559-17836578 | MS.gene08420:CDS | 25.0% |
| ! | GTTAATTGATGTTTAAGCTT+AGG | - | chr4.1:17836446-17836465 | None:intergenic | 25.0% |
| ! | TAGTTATGAATTATGTCCTT+CGG | + | chr4.1:17837060-17837079 | MS.gene08420:CDS | 25.0% |
| ! | TTTCACTTGTGAAATGTAAT+AGG | + | chr4.1:17837645-17837664 | MS.gene08420:intron | 25.0% |
| !! | AAAAAATACAAGTTGGAAGT+AGG | - | chr4.1:17837172-17837191 | None:intergenic | 25.0% |
| !! | TCTGATTTTGAATTTTGCAT+GGG | + | chr4.1:17837868-17837887 | MS.gene08420:CDS | 25.0% |
| !! | TTCTGATTTTGAATTTTGCA+TGG | + | chr4.1:17837867-17837886 | MS.gene08420:CDS | 25.0% |
| !! | TTGTACAATTTTGTTAGTGA+GGG | + | chr4.1:17837967-17837986 | MS.gene08420:CDS | 25.0% |
| !! | TTTTGAATAACAATAAGCCA+AGG | - | chr4.1:17837362-17837381 | None:intergenic | 25.0% |
| !!! | AAAGATAGAATTTGATAACG+AGG | + | chr4.1:17836235-17836254 | MS.gene08420:CDS | 25.0% |
| !!! | TGTATTGTTTTGATAACCAT+GGG | + | chr4.1:17838089-17838108 | MS.gene08420:intron | 25.0% |
| !!! | TTGTATTGTTTTGATAACCA+TGG | + | chr4.1:17838088-17838107 | MS.gene08420:intron | 25.0% |
| AAATGGATGTATTACAATGG+TGG | + | chr4.1:17837767-17837786 | MS.gene08420:CDS | 30.0% | |
| AACTATCAACTAGAACACAT+TGG | - | chr4.1:17837210-17837229 | None:intergenic | 30.0% | |
| ATTTCCGGATCTATCAATAT+TGG | + | chr4.1:17837807-17837826 | MS.gene08420:CDS | 30.0% | |
| CAGAAATGGATGTATTACAA+TGG | + | chr4.1:17837764-17837783 | MS.gene08420:CDS | 30.0% | |
| GAGCAAGTTTGAGAAATATT+GGG | + | chr4.1:17837276-17837295 | MS.gene08420:CDS | 30.0% | |
| GAGTAGAAGGGAAAAATTTA+AGG | + | chr4.1:17836895-17836914 | MS.gene08420:CDS | 30.0% | |
| TGAGCAAGTTTGAGAAATAT+TGG | + | chr4.1:17837275-17837294 | MS.gene08420:CDS | 30.0% | |
| TTGAAAGAGCTCTTAAATAC+CGG | + | chr4.1:17837005-17837024 | MS.gene08420:CDS | 30.0% | |
| ! | GAGTAATAATGATCGATTTC+CGG | + | chr4.1:17837792-17837811 | MS.gene08420:CDS | 30.0% |
| ! | GGCTTATTGTTATTCAAAAC+TGG | + | chr4.1:17837363-17837382 | MS.gene08420:CDS | 30.0% |
| ! | GTTGTACAATTTTGTTAGTG+AGG | + | chr4.1:17837966-17837985 | MS.gene08420:CDS | 30.0% |
| ! | TGTTGTGCTATTAATCATGT+TGG | - | chr4.1:17837146-17837165 | None:intergenic | 30.0% |
| ! | TTACTTAGATGAGTCAGTTT+TGG | + | chr4.1:17837726-17837745 | MS.gene08420:CDS | 30.0% |
| ! | TTGAATTTGTTTAACCTCGT+TGG | + | chr4.1:17837616-17837635 | MS.gene08420:intron | 30.0% |
| ! | TTTTCGTTGTTATGCAGAAA+TGG | + | chr4.1:17837750-17837769 | MS.gene08420:CDS | 30.0% |
| !! | AAGAACTTTTAAGGAGAATC+AGG | + | chr4.1:17837483-17837502 | MS.gene08420:CDS | 30.0% |
| !! | ATGCTATTTGAGAAGTATTC+TGG | + | chr4.1:17837436-17837455 | MS.gene08420:CDS | 30.0% |
| !! | ATGTGTTCTAGTTGATAGTT+TGG | + | chr4.1:17837210-17837229 | MS.gene08420:CDS | 30.0% |
| !! | TGTGTTCTAGTTGATAGTTT+GGG | + | chr4.1:17837211-17837230 | MS.gene08420:CDS | 30.0% |
| ACAATGCTGAAATGTAACCT+AGG | + | chr4.1:17836190-17836209 | MS.gene08420:intron | 35.0% | |
| AGACATTTCTTCGAATACCT+AGG | - | chr4.1:17836210-17836229 | None:intergenic | 35.0% | |
| ATGTTGGCAGTTTCACAAAA+AGG | - | chr4.1:17837130-17837149 | None:intergenic | 35.0% | |
| TAAGCCTCGATAACATTTCT+AGG | - | chr4.1:17836395-17836414 | None:intergenic | 35.0% | |
| TCGAGCTCGAAAAAATGAAA+GGG | - | chr4.1:17836323-17836342 | None:intergenic | 35.0% | |
| ! | AAGTTGAGACTTTCCAGTTT+TGG | - | chr4.1:17837701-17837720 | None:intergenic | 35.0% |
| ! | ACCCATTTTGCAAAACAAGT+TGG | - | chr4.1:17836739-17836758 | None:intergenic | 35.0% |
| ! | CTAGGAGGTATAGCAATATT+TGG | - | chr4.1:17836377-17836396 | None:intergenic | 35.0% |
| ! | GGTTGAGTTGTTGAATGATT+GGG | + | chr4.1:17836637-17836656 | MS.gene08420:CDS | 35.0% |
| ! | GTTGAGTTGTTGAATGATTG+GGG | + | chr4.1:17836638-17836657 | MS.gene08420:CDS | 35.0% |
| ! | TATAGTGTCGTTCTTGCATT+GGG | + | chr4.1:17837304-17837323 | MS.gene08420:CDS | 35.0% |
| ! | TCAAATTGATTCACGCTTTG+TGG | + | chr4.1:17836262-17836281 | MS.gene08420:CDS | 35.0% |
| ! | TGGGGTTCAAAGAACTTTTA+AGG | + | chr4.1:17837474-17837493 | MS.gene08420:CDS | 35.0% |
| ! | TGGTTGAGTTGTTGAATGAT+TGG | + | chr4.1:17836636-17836655 | MS.gene08420:CDS | 35.0% |
| !! | ATTCTAGCTTCCACATTCAT+CGG | - | chr4.1:17837931-17837950 | None:intergenic | 35.0% |
| !! | CAAAATGGGTTGTTATGTGA+TGG | + | chr4.1:17836749-17836768 | MS.gene08420:CDS | 35.0% |
| !! | TTTTGGTAACAAGCTGTTGA+TGG | - | chr4.1:17837684-17837703 | None:intergenic | 35.0% |
| !!! | AGCCAACTTGTTTTGCAAAA+TGG | + | chr4.1:17836734-17836753 | MS.gene08420:CDS | 35.0% |
| !!! | GCCAACTTGTTTTGCAAAAT+GGG | + | chr4.1:17836735-17836754 | MS.gene08420:CDS | 35.0% |
| !!! | TTTCATTTTTTCGAGCTCGA+GGG | + | chr4.1:17836323-17836342 | MS.gene08420:CDS | 35.0% |
| AAATCTCACCACTAGTAGGA+GGG | - | chr4.1:17836607-17836626 | None:intergenic | 40.0% | |
| AAGGTTGAAAACTTCATCCG+TGG | - | chr4.1:17837343-17837362 | None:intergenic | 40.0% | |
| AAGTGAAAAGGAAACCAACG+AGG | - | chr4.1:17837633-17837652 | None:intergenic | 40.0% | |
| ACCTCCTAGAAATGTTATCG+AGG | + | chr4.1:17836388-17836407 | MS.gene08420:CDS | 40.0% | |
| AGGTTGAAAACTTCATCCGT+GGG | - | chr4.1:17837342-17837361 | None:intergenic | 40.0% | |
| ATTCGCGTCAACAAAATGAG+CGG | - | chr4.1:17836543-17836562 | None:intergenic | 40.0% | |
| CAGGCCAATATTGATAGATC+CGG | - | chr4.1:17837814-17837833 | None:intergenic | 40.0% | |
| CTAGAATTTGTACTCGCAGT+TGG | + | chr4.1:17837944-17837963 | MS.gene08420:CDS | 40.0% | |
| CTCGAGCTCGAAAAAATGAA+AGG | - | chr4.1:17836324-17836343 | None:intergenic | 40.0% | |
| GAGCAAGCTTCTAATGACTT+TGG | + | chr4.1:17838215-17838234 | MS.gene08420:CDS | 40.0% | |
| GCGTTAAAACTAGTTAGCTG+TGG | + | chr4.1:17836827-17836846 | MS.gene08420:CDS | 40.0% | |
| GTAATGGCATGCTAGAAGAT+TGG | - | chr4.1:17837510-17837529 | None:intergenic | 40.0% | |
| TAGTAGGAGGGTAAACAAGA+CGG | - | chr4.1:17836595-17836614 | None:intergenic | 40.0% | |
| TCATATGTTGCCGATGAATG+TGG | + | chr4.1:17837918-17837937 | MS.gene08420:CDS | 40.0% | |
| TGACAAATCTCACCACTAGT+AGG | - | chr4.1:17836611-17836630 | None:intergenic | 40.0% | |
| TGGTGAGATTTGTCAGAGAA+TGG | + | chr4.1:17836616-17836635 | MS.gene08420:CDS | 40.0% | |
| TTCAAAATCAGAAGCTACGG+TGG | - | chr4.1:17837860-17837879 | None:intergenic | 40.0% | |
| ! | ACGGATGAAGTTTTCAACCT+TGG | + | chr4.1:17837342-17837361 | MS.gene08420:CDS | 40.0% |
| ! | ATTTAAGGAGTGCGTTGAAC+AGG | + | chr4.1:17836910-17836929 | MS.gene08420:CDS | 40.0% |
| ! | CTCATTTTGTTGACGCGAAT+TGG | + | chr4.1:17836543-17836562 | MS.gene08420:CDS | 40.0% |
| ! | GAGGCATTCAAAGAGTAGAA+GGG | + | chr4.1:17836883-17836902 | MS.gene08420:CDS | 40.0% |
| ! | GTATAGTGTCGTTCTTGCAT+TGG | + | chr4.1:17837303-17837322 | MS.gene08420:CDS | 40.0% |
| ! | TAGTTCGGTTCGCTTACATT+TGG | + | chr4.1:17836946-17836965 | MS.gene08420:CDS | 40.0% |
| ! | TGAGGCATTCAAAGAGTAGA+AGG | + | chr4.1:17836882-17836901 | MS.gene08420:CDS | 40.0% |
| !! | CAACAGCTTGTTACCAAAAC+TGG | + | chr4.1:17837685-17837704 | MS.gene08420:CDS | 40.0% |
| !! | GAGAGAGTATCATGTTTGTG+AGG | + | chr4.1:17836864-17836883 | MS.gene08420:CDS | 40.0% |
| !!! | CTTTCATTTTTTCGAGCTCG+AGG | + | chr4.1:17836322-17836341 | MS.gene08420:CDS | 40.0% |
| CAAATCTCACCACTAGTAGG+AGG | - | chr4.1:17836608-17836627 | None:intergenic | 45.0% | |
| CTTGTTTACCCTCCTACTAG+TGG | + | chr4.1:17836596-17836615 | MS.gene08420:CDS | 45.0% | |
| GAAAACTTTCGAACGCACAC+CGG | - | chr4.1:17837027-17837046 | None:intergenic | 45.0% | |
| GAAAGGGCAAATCATGTGCA+AGG | - | chr4.1:17836307-17836326 | None:intergenic | 45.0% | |
| TGGATGCATCAACCTGTGAA+AGG | + | chr4.1:17837383-17837402 | MS.gene08420:CDS | 45.0% | |
| TTGCTGTAGCTTCCTTTCAC+AGG | - | chr4.1:17837398-17837417 | None:intergenic | 45.0% | |
| ! | GCCTCGATAACATTTCTAGG+AGG | - | chr4.1:17836392-17836411 | None:intergenic | 45.0% |
| !! | GGTTGGTGGTGTTGATAGTT+CGG | + | chr4.1:17836931-17836950 | MS.gene08420:CDS | 45.0% |
| ATCAGAAGCTACGGTGGCAA+TGG | - | chr4.1:17837854-17837873 | None:intergenic | 50.0% | |
| CTGGCAACAACACTTCTGCT+GGG | + | chr4.1:17837455-17837474 | MS.gene08420:CDS | 50.0% | |
| GGGAACACTTAACAAGTCGC+AGG | - | chr4.1:17837833-17837852 | None:intergenic | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+TGG | + | chr4.1:17838016-17838035 | MS.gene08420:intron | 50.0% | |
| TATGTCCTTCGGCAGAAGAG+TGG | + | chr4.1:17837071-17837090 | MS.gene08420:CDS | 50.0% | |
| TCAGAAGCTACGGTGGCAAT+GGG | - | chr4.1:17837853-17837872 | None:intergenic | 50.0% | |
| TCTGGCAACAACACTTCTGC+TGG | + | chr4.1:17837454-17837473 | MS.gene08420:CDS | 50.0% | |
| TGGCAACAACACTTCTGCTG+GGG | + | chr4.1:17837456-17837475 | MS.gene08420:CDS | 50.0% | |
| TGTCGTTCTTGCATTGGGAG+CGG | + | chr4.1:17837309-17837328 | MS.gene08420:CDS | 50.0% | |
| ! | AAGGAGTGCGTTGAACAGGT+TGG | + | chr4.1:17836914-17836933 | MS.gene08420:CDS | 50.0% |
| ! | CTTTTCCACTCTTCTGCCGA+AGG | - | chr4.1:17837079-17837098 | None:intergenic | 50.0% |
| !! | TTTTCGAGCTCGAGGGAATG+AGG | + | chr4.1:17836330-17836349 | MS.gene08420:CDS | 50.0% |
| GATGGAGAAGACGACGACGA+TGG | + | chr4.1:17838149-17838168 | MS.gene08420:intron | 55.0% | |
| ! | GAGTGCGTTGAACAGGTTGG+TGG | + | chr4.1:17836917-17836936 | MS.gene08420:CDS | 55.0% |
| TGGGAGCGGTTCTTGACCCA+CGG | + | chr4.1:17837323-17837342 | MS.gene08420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17836095 | 17838271 | 17836095 | ID=MS.gene08420 |
| chr4.1 | mRNA | 17836095 | 17838271 | 17836095 | ID=MS.gene08420.t1;Parent=MS.gene08420 |
| chr4.1 | exon | 17836095 | 17836109 | 17836095 | ID=MS.gene08420.t1.exon1;Parent=MS.gene08420.t1 |
| chr4.1 | CDS | 17836095 | 17836109 | 17836095 | ID=cds.MS.gene08420.t1;Parent=MS.gene08420.t1 |
| chr4.1 | exon | 17836212 | 17837567 | 17836212 | ID=MS.gene08420.t1.exon2;Parent=MS.gene08420.t1 |
| chr4.1 | CDS | 17836212 | 17837567 | 17836212 | ID=cds.MS.gene08420.t1;Parent=MS.gene08420.t1 |
| chr4.1 | exon | 17837667 | 17837988 | 17837667 | ID=MS.gene08420.t1.exon3;Parent=MS.gene08420.t1 |
| chr4.1 | CDS | 17837667 | 17837988 | 17837667 | ID=cds.MS.gene08420.t1;Parent=MS.gene08420.t1 |
| chr4.1 | exon | 17838150 | 17838271 | 17838150 | ID=MS.gene08420.t1.exon4;Parent=MS.gene08420.t1 |
| chr4.1 | CDS | 17838150 | 17838271 | 17838150 | ID=cds.MS.gene08420.t1;Parent=MS.gene08420.t1 |
| Gene Sequence |
| Protein sequence |
