AlfalfaGEDB | MS.gene08716

M. sativa cultivar XinJiangDaYe / MS.gene08716

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08716.t1	XP_003606419.2	96.9	451	12	1	3	453	47	495	2.50E-252	880.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08716.t1	Q700D2	54.2	323	114	9	9	302	68	385	2.1e-82	307.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08716.t1	G7JPG1	96.9	451	12	1	3	453	47	495	1.8e-252	880.9

TFs/TRs:

Gene ID	Type	Classification
MS.gene08716.t1	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene08716	0.815639	8.34E-52	-1.69E-46
MS.gene04984	MS.gene08716	0.80705	6.11E-50	-1.69E-46
MS.gene050226	MS.gene08716	0.829665	4.53E-55	-1.69E-46
MS.gene050227	MS.gene08716	0.838812	2.30E-57	-1.69E-46
MS.gene050228	MS.gene08716	0.838989	2.07E-57	-1.69E-46
MS.gene050623	MS.gene08716	-0.847029	1.50E-59	-1.69E-46
MS.gene050719	MS.gene08716	0.806666	7.36E-50	-1.69E-46
MS.gene050721	MS.gene08716	0.80831	3.30E-50	-1.69E-46
MS.gene050724	MS.gene08716	0.80358	3.26E-49	-1.69E-46
MS.gene050762	MS.gene08716	0.800306	1.53E-48	-1.69E-46
MS.gene050763	MS.gene08716	0.802143	6.45E-49	-1.69E-46
MS.gene050824	MS.gene08716	0.806234	9.08E-50	-1.69E-46
MS.gene051210	MS.gene08716	0.805612	1.23E-49	-1.69E-46
MS.gene051790	MS.gene08716	0.802167	6.38E-49	-1.69E-46
MS.gene052012	MS.gene08716	0.801961	7.03E-49	-1.69E-46
MS.gene052896	MS.gene08716	0.807589	4.69E-50	-1.69E-46
MS.gene053381	MS.gene08716	0.801459	8.92E-49	-1.69E-46
MS.gene054379	MS.gene08716	0.804171	2.46E-49	-1.69E-46
MS.gene05468	MS.gene08716	0.808414	3.13E-50	-1.69E-46
MS.gene056552	MS.gene08716	0.810392	1.18E-50	-1.69E-46
MS.gene058399	MS.gene08716	0.813596	2.36E-51	-1.69E-46
MS.gene060637	MS.gene08716	0.802179	6.34E-49	-1.69E-46
MS.gene060683	MS.gene08716	0.82317	1.60E-53	-1.69E-46
MS.gene060685	MS.gene08716	0.811666	6.25E-51	-1.69E-46
MS.gene060802	MS.gene08716	0.80554	1.27E-49	-1.69E-46
MS.gene060803	MS.gene08716	0.821957	3.06E-53	-1.69E-46
MS.gene060998	MS.gene08716	0.806701	7.24E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08716.t1	MTR_4g059870	96.896	451	12	1	3	453	47	495	0.0	914
MS.gene08716.t1	MTR_2g093960	56.160	349	108	13	3	326	41	369	5.18e-120	357
MS.gene08716.t1	MTR_2g099990	41.772	474	185	16	2	451	54	460	2.61e-104	318
MS.gene08716.t1	MTR_8g017210	85.535	159	22	1	2	160	70	227	5.66e-102	314
MS.gene08716.t1	MTR_1g094115	40.388	515	204	17	3	452	56	532	1.18e-99	308
MS.gene08716.t1	MTR_2g090745	50.888	338	110	10	4	303	17	336	1.47e-98	302
MS.gene08716.t1	MTR_1g016010	76.023	171	41	0	2	172	49	219	6.72e-98	301
MS.gene08716.t1	MTR_1g112270	74.269	171	41	2	3	173	53	220	1.15e-95	299
MS.gene08716.t1	MTR_1g112270	74.556	169	40	2	5	173	66	231	3.26e-94	296
MS.gene08716.t1	MTR_2g099990	40.879	455	184	15	18	451	1	391	8.14e-94	289
MS.gene08716.t1	MTR_1g094115	39.113	496	199	17	22	452	58	515	5.16e-87	275
MS.gene08716.t1	MTR_2g017720	77.586	116	20	2	4	119	323	432	2.25e-55	190
MS.gene08716.t1	MTR_3g102000	76.471	85	16	2	32	116	51	131	5.07e-37	135
MS.gene08716.t1	MTR_5g030560	80.000	45	9	0	4	48	16	60	2.34e-21	88.2
MS.gene08716.t1	MTR_1g093095	34.507	142	81	4	17	147	109	249	9.27e-20	89.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08716.t1	AT3G45260	79.290	169	35	0	2	170	47	215	1.24e-104	318
MS.gene08716.t1	AT3G45260	79.290	169	35	0	2	170	47	215	1.24e-104	318
MS.gene08716.t1	AT1G55110	81.098	164	31	0	2	165	71	234	1.03e-101	311
MS.gene08716.t1	AT1G55110	81.098	164	31	0	2	165	71	234	1.03e-101	311
MS.gene08716.t1	AT1G55110	81.098	164	31	0	2	165	71	234	1.03e-101	311
MS.gene08716.t1	AT5G03150	81.761	159	29	0	3	161	62	220	1.64e-100	310
MS.gene08716.t1	AT5G60470	76.970	165	38	0	2	166	52	216	2.03e-100	308
MS.gene08716.t1	AT5G60470	76.970	165	38	0	2	166	48	212	2.49e-100	308
MS.gene08716.t1	AT3G50700	83.226	155	25	1	3	157	43	196	2.73e-100	307
MS.gene08716.t1	AT5G66730	84.516	155	23	1	3	157	41	194	3.41e-100	309
MS.gene08716.t1	AT1G03840	82.803	157	26	1	2	158	49	204	1.07e-99	308
MS.gene08716.t1	AT2G02080	40.789	456	188	12	2	416	62	476	2.05e-99	307
MS.gene08716.t1	AT2G02080	40.789	456	188	12	2	416	62	476	2.05e-99	307
MS.gene08716.t1	AT2G02080	40.789	456	188	12	2	416	62	476	2.05e-99	307
MS.gene08716.t1	AT2G02080	40.789	456	188	12	2	416	62	476	2.05e-99	307
MS.gene08716.t1	AT3G13810	81.875	160	29	0	2	161	59	218	2.37e-99	306
MS.gene08716.t1	AT3G13810	81.875	160	29	0	2	161	78	237	3.11e-99	306
MS.gene08716.t1	AT3G13810	81.875	160	29	0	2	161	78	237	3.11e-99	306
MS.gene08716.t1	AT3G13810	81.875	160	29	0	2	161	73	232	3.57e-99	306
MS.gene08716.t1	AT5G44160	81.875	160	28	1	2	161	45	203	1.40e-98	303
MS.gene08716.t1	AT4G02670	80.892	157	30	0	2	158	63	219	1.45e-98	301
MS.gene08716.t1	AT4G02670	80.892	157	30	0	2	158	61	217	1.45e-98	301
MS.gene08716.t1	AT5G60470	76.543	162	38	0	5	166	46	207	5.18e-98	301
MS.gene08716.t1	AT1G14580	78.125	160	34	1	2	161	61	219	3.05e-97	300
MS.gene08716.t1	AT1G14580	78.125	160	34	1	2	161	61	219	3.05e-97	300
MS.gene08716.t1	AT1G14580	78.125	160	34	1	2	161	75	233	4.93e-97	300
MS.gene08716.t1	AT1G03840	81.935	155	27	1	4	158	49	202	5.15e-97	301
MS.gene08716.t1	AT5G44160	45.266	433	190	15	4	416	8	413	5.80e-97	298
MS.gene08716.t1	AT3G13810	81.529	157	29	0	5	161	68	224	2.28e-96	299
MS.gene08716.t1	AT3G13810	81.529	157	29	0	5	161	82	238	2.59e-96	299
MS.gene08716.t1	AT2G02070	73.939	165	38	2	3	163	61	224	4.77e-93	293
MS.gene08716.t1	AT2G02070	73.939	165	38	2	3	163	61	224	4.77e-93	293
MS.gene08716.t1	AT2G02080	39.773	440	183	12	18	416	1	399	4.88e-90	281
MS.gene08716.t1	AT2G02080	39.773	440	183	12	18	416	1	399	4.88e-90	281
MS.gene08716.t1	AT1G68130	63.265	147	53	1	3	148	50	196	2.30e-68	224
MS.gene08716.t1	AT2G01940	62.416	149	55	1	3	150	53	201	9.87e-68	223
MS.gene08716.t1	AT1G25250	62.838	148	53	2	3	148	42	189	1.66e-67	221
MS.gene08716.t1	AT1G25250	62.585	147	53	2	4	148	20	166	1.56e-66	217
MS.gene08716.t1	AT2G01940	61.333	150	56	2	3	150	53	202	6.88e-64	213
MS.gene08716.t1	AT1G68130	61.818	110	41	1	40	148	1	110	6.91e-45	159
MS.gene08716.t1	AT2G01940	61.607	112	42	1	40	150	1	112	1.02e-44	160
MS.gene08716.t1	AT1G25250	62.162	111	40	2	40	148	1	111	2.02e-44	157
MS.gene08716.t1	AT1G34370	33.714	175	103	4	3	164	14	188	1.26e-24	103
MS.gene08716.t1	AT1G34370	33.714	175	103	4	3	164	224	398	4.42e-24	105
MS.gene08716.t1	AT1G34370	33.714	175	103	4	3	164	224	398	4.42e-24	105
MS.gene08716.t1	AT5G22890	33.987	153	88	4	8	147	202	354	6.60e-23	100
MS.gene08716.t1	AT1G13290	35.484	155	89	6	17	161	95	248	4.90e-20	90.9
MS.gene08716.t1	AT1G51220	32.317	164	93	5	17	172	172	325	7.87e-20	90.9
MS.gene08716.t1	AT1G08290	38.519	135	73	4	22	147	179	312	6.47e-19	88.2
MS.gene08716.t1	AT3G20880	35.252	139	81	4	17	147	250	387	6.88e-19	89.0
MS.gene08716.t1	AT3G57670	35.252	139	81	4	17	147	211	348	1.91e-18	87.4
MS.gene08716.t1	AT1G34790	36.691	139	79	4	17	147	139	276	2.24e-18	85.9

Find 80 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTGAATAAGTTGGTGAATT+TGG	0.142711	4.2:+43827642	MS.gene08716:CDS
CAAGAACTTGGTGAGTTTAA+TGG	0.196940	4.2:+43827913	MS.gene08716:CDS
TTTCAGTTTCACTCAGAATT+TGG	0.212422	4.2:+43827193	MS.gene08716:CDS
AGATTGAACTGCATATTTCT+TGG	0.249648	4.2:-43826515	None:intergenic
TCAAATTCAAACAATATGTT+TGG	0.277577	4.2:+43827715	MS.gene08716:CDS
GCCGATGAAGCTGCAAATTC+TGG	0.302791	4.2:-43826303	None:intergenic
TTTAATGGAATGGGATCATT+AGG	0.305018	4.2:+43827928	MS.gene08716:CDS
TGTGAATGGTACAAAGGATT+TGG	0.316365	4.2:+43827741	MS.gene08716:CDS
CCATGAACCTTCTAGAGCTT+TGG	0.326353	4.2:+43826420	MS.gene08716:CDS
ACCACTTCAGATTCCGGATC+TGG	0.353987	4.2:-43826205	None:intergenic
CAAATTCAAACAATATGTTT+GGG	0.356792	4.2:+43827716	MS.gene08716:CDS
AATAGACAAATGTATGATTC+AGG	0.359404	4.2:+43827799	MS.gene08716:CDS
CAGCAGCATTAAGCAACTTT+CGG	0.370255	4.2:+43827116	MS.gene08716:CDS
CATGAACCTTCTAGAGCTTT+GGG	0.370674	4.2:+43826421	MS.gene08716:CDS
AATCTCTTGTAAAACCCATT+TGG	0.383514	4.2:-43827843	None:intergenic
AGCAATAGCAGCACCAATCT+TGG	0.398971	4.2:+43827670	MS.gene08716:CDS
CGAAAGTTGCTTAATGCTGC+TGG	0.400098	4.2:-43827115	None:intergenic
CCAAAGCTCTAGAAGGTTCA+TGG	0.410521	4.2:-43826420	None:intergenic
CTTGGTGAGTTTAATGGAAT+GGG	0.417145	4.2:+43827919	MS.gene08716:CDS
GAAGACTGTGTTATTATCAT+TGG	0.421766	4.2:-43827548	None:intergenic
GCTGCAAATTCTGGTCTCTC+TGG	0.424694	4.2:-43826294	None:intergenic
GCTGTTACTGACAAATGATT+TGG	0.431928	4.2:-43827475	None:intergenic
AATATGCAGTTCAATCTGAT+TGG	0.433651	4.2:+43826521	MS.gene08716:CDS
CCACTTTCACATTGTTAATG+AGG	0.436319	4.2:+43827582	MS.gene08716:CDS
AAATCTCCCAAAGCTCTAGA+AGG	0.438385	4.2:-43826427	None:intergenic
GCTCTTTGCTTCAGCTTCCA+TGG	0.444326	4.2:-43826340	None:intergenic
ATGCAAACAATGGATGTGTT+TGG	0.447388	4.2:+43827292	MS.gene08716:CDS
TAAATACCCACCTCCAAGAT+TGG	0.449616	4.2:-43827683	None:intergenic
GTTGCAGAAAGAATCTCAAA+TGG	0.449863	4.2:+43827504	MS.gene08716:CDS
CAAAGATCAAATTCGAAAGA+AGG	0.450162	4.2:+43826366	MS.gene08716:CDS
TTATGTGAAATCTGCAACAA+GGG	0.451384	4.2:+43826268	MS.gene08716:CDS
TTCATTACTCCATGTAGGAT+TGG	0.451760	4.2:-43827361	None:intergenic
TATGTCACCAAAGTCATTGA+TGG	0.456254	4.2:+43826231	MS.gene08716:CDS
CCATGTAGGATTGGCAAAGA+TGG	0.456765	4.2:-43827352	None:intergenic
TTTGCTTCAGCTTCCATGGT+AGG	0.459248	4.2:-43826336	None:intergenic
ACTTGGTGAGTTTAATGGAA+TGG	0.460921	4.2:+43827918	MS.gene08716:CDS
AATAATCTTCAGAGCCAGTA+TGG	0.465640	4.2:+43827952	MS.gene08716:CDS
CCTCATTAACAATGTGAAAG+TGG	0.472482	4.2:-43827582	None:intergenic
AGTAGTGTCGACCACCATAC+TGG	0.480594	4.2:-43827966	None:intergenic
TTTGTCGCCATCAATGACTT+TGG	0.484591	4.2:-43826238	None:intergenic
ACCAGAATTTGCAGCTTCAT+CGG	0.488033	4.2:+43826302	MS.gene08716:CDS
CCATCTTTGCCAATCCTACA+TGG	0.494098	4.2:+43827352	MS.gene08716:CDS
GAAAACATGGTGAGAAGAGG+TGG	0.495783	4.2:+43826476	MS.gene08716:CDS
TGGTGCACACAAGTCTTCTC+AGG	0.500242	4.2:-43826400	None:intergenic
AGAGCTTTGGGAGATTTGAC+AGG	0.501432	4.2:+43826433	MS.gene08716:CDS
AGCAGCACCAATCTTGGAGG+TGG	0.501855	4.2:+43827676	MS.gene08716:CDS
ATAGCAACCACTTCAGATTC+CGG	0.506246	4.2:-43826211	None:intergenic
CTTGTTTCATTACTCCATGT+AGG	0.506319	4.2:-43827366	None:intergenic
AAAGCTCATAGCAAGATTTG+TGG	0.506969	4.2:+43826544	MS.gene08716:CDS
TGCAGATTTCACATAAGAAA+CGG	0.507472	4.2:-43826261	None:intergenic
GAATAAGTTGGTGAATTTGG+AGG	0.513790	4.2:+43827645	MS.gene08716:CDS
AACATCATCAGAACCACCAT+TGG	0.518482	4.2:+43827225	MS.gene08716:CDS
AATATGTTTGGGATTGTGAA+TGG	0.518566	4.2:+43827727	MS.gene08716:CDS
AAATGTATGATTCAGGTTCA+AGG	0.535524	4.2:+43827806	MS.gene08716:CDS
TTCTGATATAATGCAAACAA+TGG	0.536311	4.2:+43827282	MS.gene08716:CDS
AATAAGTTGGTGAATTTGGA+GGG	0.537676	4.2:+43827646	MS.gene08716:CDS
TTGCAGAAAGAATCTCAAAT+GGG	0.545569	4.2:+43827505	MS.gene08716:CDS
CTTATGTGAAATCTGCAACA+AGG	0.550563	4.2:+43826267	MS.gene08716:CDS
CACATGAATGAATCCAGATC+CGG	0.553014	4.2:+43826192	None:intergenic
ACATCATCAGAACCACCATT+GGG	0.553100	4.2:+43827226	MS.gene08716:CDS
TTAGTGTAATTTCCCAATGG+TGG	0.567890	4.2:-43827238	None:intergenic
GTAGAAAACATGGTGAGAAG+AGG	0.583382	4.2:+43826473	MS.gene08716:CDS
TACAAAGGATTTGGATCATG+TGG	0.586497	4.2:+43827750	MS.gene08716:CDS
AATAGCAGCACCAATCTTGG+AGG	0.592274	4.2:+43827673	MS.gene08716:CDS
TGGGATTGTGAATGGTACAA+AGG	0.593396	4.2:+43827735	MS.gene08716:CDS
AAGTGAAGAGTTGAATAAGT+TGG	0.597167	4.2:+43827633	MS.gene08716:CDS
AATCTCAAATGGGATCTACA+AGG	0.601252	4.2:+43827515	MS.gene08716:CDS
TCTGAGTGAAACTGAAAACC+AGG	0.601782	4.2:-43827187	None:intergenic
AGAGAGTACAAATGTGATTG+TGG	0.604424	4.2:+43826571	MS.gene08716:CDS
GGCGAGGACACAACCTACCA+TGG	0.608097	4.2:+43826323	MS.gene08716:CDS
GGATCATGTGGTATTGTCTG+TGG	0.615873	4.2:+43827762	MS.gene08716:CDS
TCCAGATCCGGAATCTGAAG+TGG	0.621390	4.2:+43826204	MS.gene08716:CDS
GCAGCACCAATCTTGGAGGT+GGG	0.638474	4.2:+43827677	MS.gene08716:CDS
AAACATTATAGTAGAAAACA+TGG	0.647572	4.2:+43826463	MS.gene08716:CDS
ATGTTAGTGTAATTTCCCAA+TGG	0.651961	4.2:-43827241	None:intergenic
AATTTGCAGCTTCATCGGCG+AGG	0.683827	4.2:+43826307	MS.gene08716:CDS
AATCTTCAGAGCCAGTATGG+TGG	0.697886	4.2:+43827955	MS.gene08716:CDS
TTATTATAATTCAGCCACTG+TGG	0.703090	4.2:-43827322	None:intergenic
ACAAAGTGCAAAGATAACAA+CGG	0.712713	4.2:+43827090	MS.gene08716:CDS
TGTTTGGATCACAACCACAG+TGG	0.860213	4.2:+43827308	MS.gene08716:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTAACTTAATGTATTTAGA+AGG	-	chr4.2:43826889-43826908	None:intergenic	15.0%
!!!	TTTGGAATAAATAATAAATG+AGG	+	chr4.2:43826955-43826974	MS.gene08716:intron	15.0%
!!	AAACATTATAGTAGAAAACA+TGG	+	chr4.2:43826463-43826482	MS.gene08716:CDS	20.0%
!!	AGATAGTAAATATATATACC+TGG	-	chr4.2:43826608-43826627	None:intergenic	20.0%
!!	CAAATTCAAACAATATGTTT+GGG	+	chr4.2:43827716-43827735	MS.gene08716:CDS	20.0%
!!	CCATTAAAATCATGAAATTA+AGG	-	chr4.2:43826776-43826795	None:intergenic	20.0%
!!	TCAAAAGAAAAAAACCAAAT+GGG	+	chr4.2:43827829-43827848	MS.gene08716:CDS	20.0%
!!	TCAAATTCAAACAATATGTT+TGG	+	chr4.2:43827715-43827734	MS.gene08716:CDS	20.0%
!!!	CCTTAATTTCATGATTTTAA+TGG	+	chr4.2:43826773-43826792	MS.gene08716:intron	20.0%
!!!	TAATTTCATGATTTTAATGG+CGG	+	chr4.2:43826776-43826795	MS.gene08716:intron	20.0%
!	AATAGACAAATGTATGATTC+AGG	+	chr4.2:43827799-43827818	MS.gene08716:CDS	25.0%
!	ATTATGTGTGTTAACAAATC+AGG	+	chr4.2:43827020-43827039	MS.gene08716:intron	25.0%
!	GTCAAAAGAAAAAAACCAAA+TGG	+	chr4.2:43827828-43827847	MS.gene08716:CDS	25.0%
!	TAATTGAAGGAATGTTTGTT+TGG	+	chr4.2:43826937-43826956	MS.gene08716:intron	25.0%
!	TTCTGATATAATGCAAACAA+TGG	+	chr4.2:43827282-43827301	MS.gene08716:CDS	25.0%
!!	GTTTTACAAGAGATTTTCTT+GGG	+	chr4.2:43827851-43827870	MS.gene08716:CDS	25.0%
!!	TTTTACAAGAGATTTTCTTG+GGG	+	chr4.2:43827852-43827871	MS.gene08716:CDS	25.0%
!!!	CAATTTCACAACTACTTTTT+CGG	-	chr4.2:43826823-43826842	None:intergenic	25.0%
	AAAAGTAGTTGTGAAATTGG+TGG	+	chr4.2:43826824-43826843	MS.gene08716:intron	30.0%
	AAAGTAGTTGTGAAATTGGT+GGG	+	chr4.2:43826825-43826844	MS.gene08716:intron	30.0%
	AAGTGAAGAGTTGAATAAGT+TGG	+	chr4.2:43827633-43827652	MS.gene08716:CDS	30.0%
	AATATGCAGTTCAATCTGAT+TGG	+	chr4.2:43826521-43826540	MS.gene08716:CDS	30.0%
	AATCTCTTGTAAAACCCATT+TGG	-	chr4.2:43827846-43827865	None:intergenic	30.0%
	ACAAAGTGCAAAGATAACAA+CGG	+	chr4.2:43827090-43827109	MS.gene08716:CDS	30.0%
	AGATTGAACTGCATATTTCT+TGG	-	chr4.2:43826518-43826537	None:intergenic	30.0%
	ATGTTAGTGTAATTTCCCAA+TGG	-	chr4.2:43827244-43827263	None:intergenic	30.0%
	CAAAGATCAAATTCGAAAGA+AGG	+	chr4.2:43826366-43826385	MS.gene08716:CDS	30.0%
	CATGTGACAGATATAATTGA+AGG	+	chr4.2:43826924-43826943	MS.gene08716:intron	30.0%
	CGAAAAAGTAGTTGTGAAAT+TGG	+	chr4.2:43826821-43826840	MS.gene08716:intron	30.0%
	GGAAAAATATGAGGAATTCT+TGG	-	chr4.2:43827169-43827188	None:intergenic	30.0%
	TGAAAACCAGGAAAAATATG+AGG	-	chr4.2:43827178-43827197	None:intergenic	30.0%
	TGCAGATTTCACATAAGAAA+CGG	-	chr4.2:43826264-43826283	None:intergenic	30.0%
	TTATGTGAAATCTGCAACAA+GGG	+	chr4.2:43826268-43826287	MS.gene08716:CDS	30.0%
	TTATTATAATTCAGCCACTG+TGG	-	chr4.2:43827325-43827344	None:intergenic	30.0%
	TTGCAGAAAGAATCTCAAAT+GGG	+	chr4.2:43827505-43827524	MS.gene08716:CDS	30.0%
	TTTAAATTGCAGCAGTCTAA+AGG	-	chr4.2:43826864-43826883	None:intergenic	30.0%
	TTTAATGGAATGGGATCATT+AGG	+	chr4.2:43827928-43827947	MS.gene08716:CDS	30.0%
	TTTCAGTTTCACTCAGAATT+TGG	+	chr4.2:43827193-43827212	MS.gene08716:CDS	30.0%
!	AAATGTATGATTCAGGTTCA+AGG	+	chr4.2:43827806-43827825	MS.gene08716:CDS	30.0%
!	AATATGTTTGGGATTGTGAA+TGG	+	chr4.2:43827727-43827746	MS.gene08716:CDS	30.0%
!	AGAATTCCTCATATTTTTCC+TGG	+	chr4.2:43827169-43827188	MS.gene08716:CDS	30.0%
!	GAAGACTGTGTTATTATCAT+TGG	-	chr4.2:43827551-43827570	None:intergenic	30.0%
!	GGTTTTACAAGAGATTTTCT+TGG	+	chr4.2:43827850-43827869	MS.gene08716:CDS	30.0%
!!	AATAAGTTGGTGAATTTGGA+GGG	+	chr4.2:43827646-43827665	MS.gene08716:CDS	30.0%
!!	GTTGAATAAGTTGGTGAATT+TGG	+	chr4.2:43827642-43827661	MS.gene08716:CDS	30.0%
	AAAGCTCATAGCAAGATTTG+TGG	+	chr4.2:43826544-43826563	MS.gene08716:CDS	35.0%
	AAGTAGTTGTGAAATTGGTG+GGG	+	chr4.2:43826826-43826845	MS.gene08716:intron	35.0%
	AATAATCTTCAGAGCCAGTA+TGG	+	chr4.2:43827952-43827971	MS.gene08716:CDS	35.0%
	AATCTCAAATGGGATCTACA+AGG	+	chr4.2:43827515-43827534	MS.gene08716:CDS	35.0%
	ATGCAAACAATGGATGTGTT+TGG	+	chr4.2:43827292-43827311	MS.gene08716:CDS	35.0%
	CCACTTTCACATTGTTAATG+AGG	+	chr4.2:43827582-43827601	MS.gene08716:CDS	35.0%
	CCTCATTAACAATGTGAAAG+TGG	-	chr4.2:43827585-43827604	None:intergenic	35.0%
	CTTATGTGAAATCTGCAACA+AGG	+	chr4.2:43826267-43826286	MS.gene08716:CDS	35.0%
	CTTGGTGAGTTTAATGGAAT+GGG	+	chr4.2:43827919-43827938	MS.gene08716:CDS	35.0%
	CTTGTTTCATTACTCCATGT+AGG	-	chr4.2:43827369-43827388	None:intergenic	35.0%
	GCTGTTACTGACAAATGATT+TGG	-	chr4.2:43827478-43827497	None:intergenic	35.0%
	GTTGCAGAAAGAATCTCAAA+TGG	+	chr4.2:43827504-43827523	MS.gene08716:CDS	35.0%
	TACAAAGGATTTGGATCATG+TGG	+	chr4.2:43827750-43827769	MS.gene08716:CDS	35.0%
	TATGTCACCAAAGTCATTGA+TGG	+	chr4.2:43826231-43826250	MS.gene08716:CDS	35.0%
	TGTGAATGGTACAAAGGATT+TGG	+	chr4.2:43827741-43827760	MS.gene08716:CDS	35.0%
	TGTGTGTTAACAAATCAGGA+AGG	+	chr4.2:43827024-43827043	MS.gene08716:intron	35.0%
	TTAGTGTAATTTCCCAATGG+TGG	-	chr4.2:43827241-43827260	None:intergenic	35.0%
	TTCATTACTCCATGTAGGAT+TGG	-	chr4.2:43827364-43827383	None:intergenic	35.0%
!	ACTTGGTGAGTTTAATGGAA+TGG	+	chr4.2:43827918-43827937	MS.gene08716:CDS	35.0%
!	AGAGAGTACAAATGTGATTG+TGG	+	chr4.2:43826571-43826590	MS.gene08716:CDS	35.0%
!	CAAGAACTTGGTGAGTTTAA+TGG	+	chr4.2:43827913-43827932	MS.gene08716:CDS	35.0%
!!	GAATAAGTTGGTGAATTTGG+AGG	+	chr4.2:43827645-43827664	MS.gene08716:CDS	35.0%
!!!	AACTACTTTTTCGGTTGCAT+TGG	-	chr4.2:43826814-43826833	None:intergenic	35.0%
	AACATCATCAGAACCACCAT+TGG	+	chr4.2:43827225-43827244	MS.gene08716:CDS	40.0%
	ACATCATCAGAACCACCATT+GGG	+	chr4.2:43827226-43827245	MS.gene08716:CDS	40.0%
	ACCAGAATTTGCAGCTTCAT+CGG	+	chr4.2:43826302-43826321	MS.gene08716:CDS	40.0%
	ATAGCAACCACTTCAGATTC+CGG	-	chr4.2:43826214-43826233	None:intergenic	40.0%
	CAGCAGCATTAAGCAACTTT+CGG	+	chr4.2:43827116-43827135	MS.gene08716:CDS	40.0%
	CCAAGTTCTTGCTGCAAAAA+AGG	-	chr4.2:43827904-43827923	None:intergenic	40.0%
	GTAGAAAACATGGTGAGAAG+AGG	+	chr4.2:43826473-43826492	MS.gene08716:CDS	40.0%
	TAAATACCCACCTCCAAGAT+TGG	-	chr4.2:43827686-43827705	None:intergenic	40.0%
	TCAGTAGTGGCTGCAATATA+CGG	+	chr4.2:43826701-43826720	MS.gene08716:intron	40.0%
	TCTCAAATCCAACGTGTTCT+TGG	-	chr4.2:43826647-43826666	None:intergenic	40.0%
	TCTGAGTGAAACTGAAAACC+AGG	-	chr4.2:43827190-43827209	None:intergenic	40.0%
	TGGGATTGTGAATGGTACAA+AGG	+	chr4.2:43827735-43827754	MS.gene08716:CDS	40.0%
	TTTGTCGCCATCAATGACTT+TGG	-	chr4.2:43826241-43826260	None:intergenic	40.0%
!	ACAAGAGATTTTCTTGGGGT+TGG	+	chr4.2:43827856-43827875	MS.gene08716:CDS	40.0%
!	ATTGTGGCACAATTTTCTCC+AGG	+	chr4.2:43826587-43826606	MS.gene08716:CDS	40.0%
!!	AAATCTCCCAAAGCTCTAGA+AGG	-	chr4.2:43826430-43826449	None:intergenic	40.0%
!!	CATGAACCTTCTAGAGCTTT+GGG	+	chr4.2:43826421-43826440	MS.gene08716:CDS	40.0%
!!!	CCTTTTTTGCAGCAAGAACT+TGG	+	chr4.2:43827901-43827920	MS.gene08716:CDS	40.0%
	AATAGCAGCACCAATCTTGG+AGG	+	chr4.2:43827673-43827692	MS.gene08716:CDS	45.0%
	AATCTTCAGAGCCAGTATGG+TGG	+	chr4.2:43827955-43827974	MS.gene08716:CDS	45.0%
	AGCAATAGCAGCACCAATCT+TGG	+	chr4.2:43827670-43827689	MS.gene08716:CDS	45.0%
	CAGATCCAATGACTCAGTAG+TGG	+	chr4.2:43826688-43826707	MS.gene08716:intron	45.0%
	CCATCTTTGCCAATCCTACA+TGG	+	chr4.2:43827352-43827371	MS.gene08716:CDS	45.0%
	CGAAAGTTGCTTAATGCTGC+TGG	-	chr4.2:43827118-43827137	None:intergenic	45.0%
	GAAAACATGGTGAGAAGAGG+TGG	+	chr4.2:43826476-43826495	MS.gene08716:CDS	45.0%
	GGATCATGTGGTATTGTCTG+TGG	+	chr4.2:43827762-43827781	MS.gene08716:CDS	45.0%
	TGTTTGGATCACAACCACAG+TGG	+	chr4.2:43827308-43827327	MS.gene08716:CDS	45.0%
	TTTAATGGCGGTTGCAATCG+CGG	+	chr4.2:43826788-43826807	MS.gene08716:intron	45.0%
	TTTGCTTCAGCTTCCATGGT+AGG	-	chr4.2:43826339-43826358	None:intergenic	45.0%
!	CCATGTAGGATTGGCAAAGA+TGG	-	chr4.2:43827355-43827374	None:intergenic	45.0%
!!	AGAGCTTTGGGAGATTTGAC+AGG	+	chr4.2:43826433-43826452	MS.gene08716:CDS	45.0%
!!	CCAAAGCTCTAGAAGGTTCA+TGG	-	chr4.2:43826423-43826442	None:intergenic	45.0%
!!	CCATGAACCTTCTAGAGCTT+TGG	+	chr4.2:43826420-43826439	MS.gene08716:CDS	45.0%
!!	ATTAAGTTAAATTAATTTAA+TGG	+	chr4.2:43826898-43826917	MS.gene08716:intron	5.0%
	AATTTGCAGCTTCATCGGCG+AGG	+	chr4.2:43826307-43826326	MS.gene08716:CDS	50.0%
	ACCACTTCAGATTCCGGATC+TGG	-	chr4.2:43826208-43826227	None:intergenic	50.0%
	GCCGATGAAGCTGCAAATTC+TGG	-	chr4.2:43826306-43826325	None:intergenic	50.0%
	GCTCTTTGCTTCAGCTTCCA+TGG	-	chr4.2:43826343-43826362	None:intergenic	50.0%
	GCTGCAAATTCTGGTCTCTC+TGG	-	chr4.2:43826297-43826316	None:intergenic	50.0%
	TCCAGATCCGGAATCTGAAG+TGG	+	chr4.2:43826204-43826223	MS.gene08716:CDS	50.0%
	TGCAGCCACTACTGAGTCAT+TGG	-	chr4.2:43826696-43826715	None:intergenic	50.0%
	TGCAGTCACCAAGAACACGT+TGG	+	chr4.2:43826636-43826655	MS.gene08716:intron	50.0%
	TGGTGCACACAAGTCTTCTC+AGG	-	chr4.2:43826403-43826422	None:intergenic	50.0%
!	CGTGTTCTTGGTGACTGCAA+TGG	-	chr4.2:43826635-43826654	None:intergenic	50.0%
!!	AGTAGTGTCGACCACCATAC+TGG	-	chr4.2:43827969-43827988	None:intergenic	50.0%
	AGCAGCACCAATCTTGGAGG+TGG	+	chr4.2:43827676-43827695	MS.gene08716:CDS	55.0%
	GCAGCACCAATCTTGGAGGT+GGG	+	chr4.2:43827677-43827696	MS.gene08716:CDS	55.0%
	GGCGAGGACACAACCTACCA+TGG	+	chr4.2:43826323-43826342	MS.gene08716:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	43826199	43827993	43826199	ID=MS.gene08716
chr4.2	mRNA	43826199	43827993	43826199	ID=MS.gene08716.t1;Parent=MS.gene08716
chr4.2	exon	43826199	43826608	43826199	ID=MS.gene08716.t1.exon1;Parent=MS.gene08716.t1
chr4.2	CDS	43826199	43826608	43826199	ID=cds.MS.gene08716.t1;Parent=MS.gene08716.t1
chr4.2	exon	43827042	43827993	43827042	ID=MS.gene08716.t1.exon2;Parent=MS.gene08716.t1
chr4.2	CDS	43827042	43827993	43827042	ID=cds.MS.gene08716.t1;Parent=MS.gene08716.t1

Gene Sequence

>MS.gene08716

ATGAATCCAGATCCGGAATCTGAAGTGGTTGCTATGTCACCAAAGTCATTGATGGCGACAAACCGTTTCTTATGTGAAATCTGCAACAAGGGTTTCCAGAGAGACCAGAATTTGCAGCTTCATCGGCGAGGACACAACCTACCATGGAAGCTGAAGCAAAGAGCAAACAAAGATCAAATTCGAAAGAAGGTTTATGTGTGTCCTGAGAAGACTTGTGTGCACCATGAACCTTCTAGAGCTTTGGGAGATTTGACAGGAATAAAGAAACATTATAGTAGAAAACATGGTGAGAAGAGGTGGAAGTGTGAGAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATAGCAAGATTTGTGGAACTAGAGAGTACAAATGTGATTGTGGCACAATTTTCTCCAGGTATATATATTTACTATCTTTCGCCATTGCAGTCACCAAGAACACGTTGGATTTGAGATAGACACAATTTTTCTAAACTCAGATCCAATGACTCAGTAGTGGCTGCAATATACGGCGACATAGAAAATAAAAATACTAATGATTAGCATTTCAATTTCAAATGTCCTTAATTTCATGATTTTAATGGCGGTTGCAATCGCGGCCAATGCAACCGAAAAAGTAGTTGTGAAATTGGTGGGGAGATCTAAAAATCCTTTAGACTGCTGCAATTTAAATGCCTTCTAAATACATTAAGTTAAATTAATTTAATGGATGCATGTGACAGATATAATTGAAGGAATGTTTGTTTGGAATAAATAATAAATGAGGATTGTTAATTCATGTTCAACTAATTCATTTATGTATTTATTTATTATGTGTGTTAACAAATCAGGAAGGACAGCTTCATAACACATAGAGCTTTTTGTGATGCATTAACTGAACAAAGTGCAAAGATAACAACGGTTCCAGCAGCATTAAGCAACTTTCGGAATGATCATTTGACGAATACTCAAACTCCAAGAATTCCTCATATTTTTCCTGGTTTTCAGTTTCACTCAGAATTTGGTAATTCAGCAACATCATCAGAACCACCATTGGGAAATTACACTAACATTTCTCATCTTCATCAAAATTCTGATATAATGCAAACAATGGATGTGTTTGGATCACAACCACAGTGGCTGAATTATAATAATACTAATCCATCTTTGCCAATCCTACATGGAGTAATGAAACAAGAACAAGAAGAAAACAAAGATTTGTCTGCTAGTGTAATAAGCTCTTTGTACTTGAGTAGAAGTCAGAATCAGAATCAACAAGAAGCACCAAATCATTTGTCAGTAACAGCATCACTGTTGCAGAAAGAATCTCAAATGGGATCTACAAGGACAATAATTACCAATGATAATAACACAGTCTTCAACAATTTGAACCACTTTCACATTGTTAATGAGGTTCAGAAATTTTATAACAAGCAATGTGAAAGTGAAGAGTTGAATAAGTTGGTGAATTTGGAGGGAAGCAATAGCAGCACCAATCTTGGAGGTGGGTATTTATTAAATGATTCAAATTCAAACAATATGTTTGGGATTGTGAATGGTACAAAGGATTTGGATCATGTGGTATTGTCTGTGGATAAAGAGACAACAAATAGACAAATGTATGATTCAGGTTCAAGGTCAAAAGAAAAAAACCAAATGGGTTTTACAAGAGATTTTCTTGGGGTTGGAGAAAATGACTCAATGAGTAGACCTTTTTTGCAGCAAGAACTTGGTGAGTTTAATGGAATGGGATCATTAGGAAATAATCTTCAGAGCCAGTATGGTGGTCGACACTACTGCTAG

Protein sequence

>MS.gene08716.t1

MNPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHGEKRWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALTEQSAKITTVPAALSNFRNDHLTNTQTPRIPHIFPGFQFHSEFGNSATSSEPPLGNYTNISHLHQNSDIMQTMDVFGSQPQWLNYNNTNPSLPILHGVMKQEQEENKDLSASVISSLYLSRSQNQNQQEAPNHLSVTASLLQKESQMGSTRTIITNDNNTVFNNLNHFHIVNEVQKFYNKQCESEELNKLVNLEGSNSSTNLGGGYLLNDSNSNNMFGIVNGTKDLDHVVLSVDKETTNRQMYDSGSRSKEKNQMGFTRDFLGVGENDSMSRPFLQQELGEFNGMGSLGNNLQSQYGGRHYC