AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052012


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052012.t1 MTR_2g098920 95.367 259 12 0 21 279 6 264 0.0 509
MS.gene052012.t1 MTR_4g067290 65.289 242 82 2 21 262 3 242 1.82e-110 320
MS.gene052012.t1 MTR_4g067290 64.876 242 83 2 21 262 1 240 3.77e-110 319
MS.gene052012.t1 MTR_4g067290 65.164 244 81 3 21 262 3 244 4.02e-109 316
MS.gene052012.t1 MTR_4g067290 65.041 246 82 3 19 262 41 284 4.08e-109 318
MS.gene052012.t1 MTR_4g067290 68.349 218 68 1 45 262 6 222 3.20e-106 308
MS.gene052012.t1 MTR_4g067290 68.182 220 67 2 45 262 6 224 7.89e-105 305
MS.gene052012.t1 MTR_3g006370 37.559 213 120 4 66 270 17 224 5.70e-40 139
MS.gene052012.t1 MTR_2g098880 36.757 185 104 4 94 266 60 243 3.75e-34 124
MS.gene052012.t1 MTR_2g098880 36.757 185 104 4 94 266 72 255 5.74e-34 124
MS.gene052012.t1 MTR_5g015480 35.971 139 67 5 95 217 56 188 1.19e-17 80.9
MS.gene052012.t1 MTR_1g057920 45.679 81 43 1 95 174 34 114 4.65e-16 73.2
MS.gene052012.t1 MTR_0402s0040 38.318 107 60 3 95 197 26 130 8.55e-14 71.2
MS.gene052012.t1 MTR_2g070590 38.462 104 60 3 95 195 17 119 6.23e-13 64.7
MS.gene052012.t1 MTR_6g017200 40.741 81 47 1 95 174 58 138 5.57e-12 62.8
MS.gene052012.t1 MTR_6g051425 31.579 114 70 3 92 197 11 124 5.19e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052012.t1 AT3G59470 67.391 184 60 0 93 276 68 251 3.36e-94 278
MS.gene052012.t1 AT3G59470 67.391 184 60 0 93 276 68 251 3.36e-94 278
MS.gene052012.t1 AT3G59470 67.391 184 60 0 93 276 80 263 5.23e-94 278
MS.gene052012.t1 AT3G07500 42.487 193 100 4 86 267 17 209 6.37e-46 154
MS.gene052012.t1 AT2G43280 36.792 212 113 4 63 270 2 196 2.82e-36 129
MS.gene052012.t1 AT4G12850 34.973 183 106 3 92 270 8 181 2.97e-33 120
MS.gene052012.t1 AT2G43280 39.394 165 91 3 110 270 2 161 1.07e-31 115
MS.gene052012.t1 AT4G38180 56.481 108 43 2 94 197 72 179 1.51e-24 103
MS.gene052012.t1 AT4G12850 44.231 104 56 1 92 195 8 109 9.86e-24 94.4
MS.gene052012.t1 AT4G12850 44.231 104 56 1 92 195 8 109 1.18e-23 94.0
MS.gene052012.t1 AT3G06250 44.118 102 45 1 94 195 27 116 5.62e-21 92.8
MS.gene052012.t1 AT3G06250 41.509 106 50 1 94 199 189 282 1.06e-20 92.0
MS.gene052012.t1 AT3G06250 44.118 102 45 1 94 195 27 116 5.62e-21 92.8
MS.gene052012.t1 AT3G06250 41.509 106 50 1 94 199 189 282 1.06e-20 92.0
MS.gene052012.t1 AT3G06250 44.118 102 45 1 94 195 27 116 5.62e-21 92.8
MS.gene052012.t1 AT3G06250 41.509 106 50 1 94 199 189 282 1.06e-20 92.0
MS.gene052012.t1 AT5G18960 43.137 102 46 1 94 195 42 131 1.38e-20 92.0
MS.gene052012.t1 AT5G18960 40.367 109 53 1 91 199 207 303 2.03e-20 91.3
MS.gene052012.t1 AT5G18960 43.137 102 46 1 94 195 42 131 1.38e-20 92.0
MS.gene052012.t1 AT5G18960 40.367 109 53 1 91 199 207 303 2.03e-20 91.3
MS.gene052012.t1 AT1G52520 36.792 106 64 1 90 195 80 182 4.37e-16 78.6
MS.gene052012.t1 AT1G80010 36.792 106 64 1 95 200 95 197 9.06e-15 74.7
MS.gene052012.t1 AT4G19990 30.000 150 75 3 92 227 21 154 5.16e-14 72.4
MS.gene052012.t1 AT4G19990 30.000 150 75 3 92 227 21 154 5.16e-14 72.4
MS.gene052012.t1 AT4G19990 30.000 150 75 3 92 227 21 154 5.26e-14 72.4
MS.gene052012.t1 AT4G19990 30.000 150 75 3 92 227 21 154 5.72e-14 72.4
MS.gene052012.t1 AT4G19990 30.000 150 75 3 92 227 21 154 5.72e-14 72.4
MS.gene052012.t1 AT4G19990 30.000 150 75 3 92 227 35 168 5.97e-14 72.0
MS.gene052012.t1 AT2G32250 31.915 141 88 3 61 197 2 138 1.19e-13 71.2
MS.gene052012.t1 AT2G32250 31.915 141 88 3 61 197 2 138 1.24e-13 71.2
MS.gene052012.t1 AT2G32250 31.915 141 88 3 61 197 2 138 1.24e-13 71.2
MS.gene052012.t1 AT2G32250 31.915 141 88 3 61 197 2 138 1.24e-13 71.2
MS.gene052012.t1 AT2G32250 31.915 141 88 3 61 197 2 138 1.24e-13 71.2
MS.gene052012.t1 AT2G32250 31.915 141 88 3 61 197 2 138 1.24e-13 71.2
MS.gene052012.t1 AT5G28530 31.707 123 78 4 78 195 38 159 2.01e-12 67.4
MS.gene052012.t1 AT5G28530 31.707 123 78 4 78 195 38 159 2.02e-12 67.4
MS.gene052012.t1 AT5G28530 31.707 123 78 4 78 195 38 159 2.02e-12 67.4
MS.gene052012.t1 AT5G28530 31.707 123 78 4 78 195 38 159 2.03e-12 67.4
MS.gene052012.t1 AT5G28530 31.707 123 78 4 78 195 38 159 2.14e-12 67.4
MS.gene052012.t1 AT2G27110 29.046 241 132 9 41 274 7 215 6.21e-12 66.2
MS.gene052012.t1 AT2G27110 29.046 241 132 9 41 274 7 215 6.21e-12 66.2
MS.gene052012.t1 AT3G22170 30.137 146 85 4 70 200 46 189 1.87e-11 64.7
MS.gene052012.t1 AT3G22170 30.137 146 85 4 70 200 46 189 1.87e-11 64.7
MS.gene052012.t1 AT1G10240 31.579 152 79 7 58 195 14 154 2.37e-11 64.3
MS.gene052012.t1 AT1G10240 31.579 152 79 7 58 195 14 154 2.37e-11 64.3
MS.gene052012.t1 AT2G32250 35.000 100 59 2 100 197 2 97 3.19e-11 63.9
MS.gene052012.t1 AT2G32250 35.000 100 59 2 100 197 2 97 3.31e-11 63.9

Find 62 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAATGCCTCACCATTAC+TGG 0.248927 2.2:-3897679 None:intergenic
AGGCGTGATGGATCTGTTAT+TGG 0.276667 2.2:+3897987 MS.gene052012:CDS
GTAATAACCATCTGGAATTC+TGG 0.278538 2.2:+3896490 MS.gene052012:CDS
TGGTTGCAGGGCAATGATTA+TGG 0.280378 2.2:+3898094 MS.gene052012:CDS
CAGAAACAAGGGTTGGTTGC+AGG 0.300475 2.2:+3898081 MS.gene052012:CDS
CAGGAACTATTGAGGTGATT+TGG 0.320322 2.2:-3897827 None:intergenic
AGCGAGCTGAAACCTATAAA+AGG 0.338658 2.2:+3898997 MS.gene052012:CDS
GTTCTCATAACCGATGTTAC+AGG 0.348049 2.2:-3897846 None:intergenic
AAGTCCCTTCTGCCTCTTCC+AGG 0.350515 2.2:-3898185 None:intergenic
AATATGACTCAAGATTCTTC+TGG 0.372511 2.2:+3897798 MS.gene052012:CDS
TTTCGATCCAACTGATGAAC+AGG 0.398044 2.2:+3897764 MS.gene052012:CDS
GCATTAGCAAATGCTACTAT+TGG 0.399597 2.2:+3897693 MS.gene052012:CDS
GGAAATTAAATTCTGGTCTA+TGG 0.402271 2.2:+3898120 MS.gene052012:CDS
AGTAGAGAGTGTGAAGGAGA+TGG 0.412908 2.2:+3899088 MS.gene052012:CDS
ATGGTGAGGAAATTAAATTC+TGG 0.421065 2.2:+3898113 MS.gene052012:CDS
ATGGTTATTACTGAGTTATA+AGG 0.427405 2.2:-3896478 None:intergenic
ACAAGAGGGTCAGTTTCAAT+TGG 0.447254 2.2:+3899121 MS.gene052012:CDS
GGCGTGATGGATCTGTTATT+GGG 0.455689 2.2:+3897988 MS.gene052012:CDS
CTTCGTTTATGAGCAATATC+CGG 0.471781 2.2:+3898205 MS.gene052012:CDS
GCTCTAGTTTGTAACAAAGA+AGG 0.478666 2.2:+3898014 MS.gene052012:CDS
ATAACTCAGTAATAACCATC+TGG 0.481933 2.2:+3896482 MS.gene052012:CDS
AAATGCATGTGCTTCAGCTT+CGG 0.486804 2.2:-3897904 None:intergenic
GGTGCAGTGGAGATTGAGAT+TGG 0.489609 2.2:+3897651 MS.gene052012:intron
AATTCATATGCTACACGTGT+TGG 0.492545 2.2:+3897930 MS.gene052012:CDS
TGATGGATCTGTTATTGGGC+GGG 0.492905 2.2:+3897992 MS.gene052012:CDS
TCTTGATCCTGTTCATCAGT+TGG 0.497177 2.2:-3897771 None:intergenic
AGAAACAAGGGTTGGTTGCA+GGG 0.508414 2.2:+3898082 MS.gene052012:CDS
CTGCCTCTTCCAGGTGTCAG+AGG 0.510409 2.2:-3898176 None:intergenic
CTCAATAGTTCCTGTAACAT+CGG 0.518345 2.2:+3897836 MS.gene052012:CDS
TACAAACTCCTGGCCGATGT+AGG 0.525221 2.2:-3897880 None:intergenic
ACAAGCGGGAAAAGATTGTA+AGG 0.526019 2.2:+3898051 MS.gene052012:CDS
CACACACATCCTCTGACACC+TGG 0.532917 2.2:+3898167 MS.gene052012:CDS
CTCTCAAGATCAAGGCGTGA+TGG 0.535255 2.2:+3897975 MS.gene052012:CDS
ACAAACTCCTGGCCGATGTA+GGG 0.537780 2.2:-3897879 None:intergenic
TTTCAGAATGCCTGACAAGC+GGG 0.539722 2.2:+3898037 MS.gene052012:CDS
CATCCTCTGACACCTGGAAG+AGG 0.555269 2.2:+3898173 MS.gene052012:CDS
GACTCAAGATTCTTCTGGAG+TGG 0.558618 2.2:+3897803 MS.gene052012:CDS
TAAGTAAGCTCTCAAGATCA+AGG 0.559347 2.2:+3897967 MS.gene052012:CDS
TAAGGCAAAGGGCAGAAACA+AGG 0.561852 2.2:+3898069 MS.gene052012:CDS
TCGAGAACTAACTCAACAGT+TGG 0.562574 2.2:+3898962 MS.gene052012:CDS
TGACACCTGGAAGAGGCAGA+AGG 0.566441 2.2:+3898180 MS.gene052012:CDS
TGATGAACCCTACATCGGCC+AGG 0.568038 2.2:+3897872 MS.gene052012:CDS
GGGAAAAGATTGTAAGGCAA+AGG 0.569600 2.2:+3898057 MS.gene052012:CDS
GGAAAAGATTGTAAGGCAAA+GGG 0.570713 2.2:+3898058 MS.gene052012:CDS
CAGCTTCGGATACAAACTCC+TGG 0.571675 2.2:-3897890 None:intergenic
CGATGTTACAGGAACTATTG+AGG 0.587098 2.2:-3897835 None:intergenic
GACACCTGGAAGAGGCAGAA+GGG 0.590498 2.2:+3898181 MS.gene052012:CDS
GATGGAAGCTAAAGAACAAG+AGG 0.602786 2.2:+3899106 MS.gene052012:CDS
TGTACTCATATAACAAGTCA+AGG 0.602934 2.2:-3899022 None:intergenic
GTGATGGATCTGTTATTGGG+CGG 0.611640 2.2:+3897991 MS.gene052012:CDS
CAAAGGGCAGAAACAAGGGT+TGG 0.628129 2.2:+3898074 MS.gene052012:CDS
AGCAAATGCTACTATTGGAG+AGG 0.632541 2.2:+3897698 MS.gene052012:CDS
GTTTCAGAATGCCTGACAAG+CGG 0.633841 2.2:+3898036 MS.gene052012:CDS
GAGATTGGTGACTCCAGTAA+TGG 0.635105 2.2:+3897666 MS.gene052012:CDS
ACAATTGATGAACCCTACAT+CGG 0.643960 2.2:+3897867 MS.gene052012:CDS
TGGTGACTCCAGTAATGGTG+AGG 0.657202 2.2:+3897671 MS.gene052012:CDS
AAGGCAAAGGGCAGAAACAA+GGG 0.671184 2.2:+3898070 MS.gene052012:CDS
ACGGCATCCAGAATTCCAGA+TGG 0.673974 2.2:-3896497 None:intergenic
GCAGGGCAATGATTATGGTG+AGG 0.678028 2.2:+3898099 MS.gene052012:CDS
GCACATAGTAGAGAGTGTGA+AGG 0.682029 2.2:+3899082 MS.gene052012:CDS
ATGGAAGCTAAAGAACAAGA+GGG 0.719285 2.2:+3899107 MS.gene052012:CDS
CTTGTTATATGAGTACATCG+AGG 0.731335 2.2:+3899028 MS.gene052012:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAGAAATTTATTAATTTAAA+GGG + chr2.2:3897009-3897028 MS.gene052012:intron 10.0%
!! TATTAATTTATGATTTACTT+GGG + chr2.2:3897295-3897314 MS.gene052012:intron 10.0%
!! TTATTAATTTATGATTTACT+TGG + chr2.2:3897294-3897313 MS.gene052012:intron 10.0%
!!! CTTAATAGATTAATAAATTT+TGG - chr2.2:3896538-3896557 None:intergenic 10.0%
!!! TTTTTTCTTATAAGAAATTA+GGG + chr2.2:3896816-3896835 MS.gene052012:intron 10.0%
!!! TTTTTTTCTTATAAGAAATT+AGG + chr2.2:3896815-3896834 MS.gene052012:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr2.2:3898886-3898905 None:intergenic 100.0%
!! ATTAATTTATGATTTACTTG+GGG + chr2.2:3897296-3897315 MS.gene052012:intron 15.0%
!! GGAGAAATTTATTAATTTAA+AGG + chr2.2:3897008-3897027 MS.gene052012:intron 15.0%
!! GGGAAATTATTATTAATAAT+CGG + chr2.2:3896842-3896861 MS.gene052012:intron 15.0%
!!! AAACTCTTTAATTTAATACT+CGG - chr2.2:3897447-3897466 None:intergenic 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr2.2:3897371-3897390 MS.gene052012:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr2.2:3897409-3897428 None:intergenic 15.0%
!!! TCTTATATCAAATTTTTTGT+TGG + chr2.2:3897630-3897649 MS.gene052012:intron 15.0%
!!! TCTTTTTCTTTTTTTCATTT+AGG + chr2.2:3896633-3896652 MS.gene052012:intron 15.0%
!!! TTTTAAATAAAGATTTGTAC+AGG - chr2.2:3898317-3898336 None:intergenic 15.0%
!!! TTTTTTTCATTTAGGTTTTT+GGG + chr2.2:3896641-3896660 MS.gene052012:intron 15.0%
!! AAAATATGAAAATAACCATC+TGG + chr2.2:3896573-3896592 MS.gene052012:intron 20.0%
!! AAGTGAAAAGATTAAATGAA+AGG + chr2.2:3898375-3898394 MS.gene052012:intron 20.0%
!! ACTCTATAAATTAATAACGT+CGG + chr2.2:3896981-3897000 MS.gene052012:intron 20.0%
!! GAAAAAAATTGACAATCTTT+AGG - chr2.2:3896615-3896634 None:intergenic 20.0%
!! TTGGATTTGATAAAACTTAA+CGG - chr2.2:3896519-3896538 None:intergenic 20.0%
!!! AAATATTTAGTGTCATTCAT+AGG + chr2.2:3896895-3896914 MS.gene052012:intron 20.0%
!!! AATATTTAGTGTCATTCATA+GGG + chr2.2:3896896-3896915 MS.gene052012:intron 20.0%
!!! AATTCCAAAATTATCCTTTT+TGG - chr2.2:3897503-3897522 None:intergenic 20.0%
!!! AGTATTTAGTTTAAACCATA+GGG + chr2.2:3897474-3897493 MS.gene052012:intron 20.0%
!!! CTTTTTTTCATTTAGGTTTT+TGG + chr2.2:3896640-3896659 MS.gene052012:intron 20.0%
!!! TAGTATTTAGTTTAAACCAT+AGG + chr2.2:3897473-3897492 MS.gene052012:intron 20.0%
! AAAAAACTATGCCCATTTAA+GGG - chr2.2:3898427-3898446 None:intergenic 25.0%
! AAAAACAAATATGTAAGACG+TGG - chr2.2:3898912-3898931 None:intergenic 25.0%
! AAAACAAATATGTAAGACGT+GGG - chr2.2:3898911-3898930 None:intergenic 25.0%
! AAAATAGGTAAAATTACTCC+CGG + chr2.2:3898677-3898696 MS.gene052012:intron 25.0%
! AAAGAGTGAAAAAAGAGAAA+GGG - chr2.2:3898294-3898313 None:intergenic 25.0%
! AATCTTTAGGTAAAGCTTAA+TGG - chr2.2:3896602-3896621 None:intergenic 25.0%
! AATTCATGTTACATGTCTTT+GGG + chr2.2:3898849-3898868 MS.gene052012:intron 25.0%
! ACCTCGAAGATAAATTAAAA+TGG - chr2.2:3898634-3898653 None:intergenic 25.0%
! ACTGTACATACCAAATAAAA+AGG + chr2.2:3897089-3897108 MS.gene052012:intron 25.0%
! ATGCTAACTTAACTAGTAAT+CGG + chr2.2:3896780-3896799 MS.gene052012:intron 25.0%
! ATGGTTATTACTGAGTTATA+AGG - chr2.2:3896481-3896500 None:intergenic 25.0%
! CTCTATAAATTAATAACGTC+GGG + chr2.2:3896982-3897001 MS.gene052012:intron 25.0%
! CTGAAACCATTAGAATTTAA+AGG + chr2.2:3898479-3898498 MS.gene052012:intron 25.0%
! GATATAAACATTGAAGTCTT+TGG - chr2.2:3898596-3898615 None:intergenic 25.0%
! GATGGAAATAAAAAACCAAA+AGG + chr2.2:3898401-3898420 MS.gene052012:intron 25.0%
! TAAAAAACTATGCCCATTTA+AGG - chr2.2:3898428-3898447 None:intergenic 25.0%
! TGAGATCCTTTAAATTCTAA+TGG - chr2.2:3898488-3898507 None:intergenic 25.0%
! TTTACAATGAAAAATCATCG+AGG + chr2.2:3898451-3898470 MS.gene052012:intron 25.0%
!! GTTTCCAAAAAGGATAATTT+TGG + chr2.2:3897496-3897515 MS.gene052012:intron 25.0%
!!! GACTAATTTGCCTTTTTATT+TGG - chr2.2:3897102-3897121 None:intergenic 25.0%
!!! TCCATTTTAATTTATCTTCG+AGG + chr2.2:3898630-3898649 MS.gene052012:intron 25.0%
!!! TTTAAGTTGACTGATCTTTA+TGG + chr2.2:3896679-3896698 MS.gene052012:intron 25.0%
AAACAAATATGTAAGACGTG+GGG - chr2.2:3898910-3898929 None:intergenic 30.0%
AAATAGGTAAAATTACTCCC+GGG + chr2.2:3898678-3898697 MS.gene052012:intron 30.0%
AAGAGTGAAAAAAGAGAAAG+GGG - chr2.2:3898293-3898312 None:intergenic 30.0%
AATATGACTCAAGATTCTTC+TGG + chr2.2:3897798-3897817 MS.gene052012:CDS 30.0%
AATCCACACACATGAAAAAT+AGG + chr2.2:3898662-3898681 MS.gene052012:intron 30.0%
AGATTAAATGAAAGGAGAGA+TGG + chr2.2:3898383-3898402 MS.gene052012:intron 30.0%
ATAACTCAGTAATAACCATC+TGG + chr2.2:3896482-3896501 MS.gene052012:CDS 30.0%
ATGGTGAGGAAATTAAATTC+TGG + chr2.2:3898113-3898132 MS.gene052012:CDS 30.0%
CAATTCATGTTACATGTCTT+TGG + chr2.2:3898848-3898867 MS.gene052012:intron 30.0%
GAAAGAGTGAAAAAAGAGAA+AGG - chr2.2:3898295-3898314 None:intergenic 30.0%
GGAAATTAAATTCTGGTCTA+TGG + chr2.2:3898120-3898139 MS.gene052012:CDS 30.0%
GTACAGTAAATGTAAACAAG+AGG + chr2.2:3897220-3897239 MS.gene052012:intron 30.0%
TCTTATAAGAAATTAGGGCA+GGG + chr2.2:3896821-3896840 MS.gene052012:intron 30.0%
TGAAACATAGTAAAACAGTG+TGG + chr2.2:3898340-3898359 MS.gene052012:intron 30.0%
TGTACTCATATAACAAGTCA+AGG - chr2.2:3899025-3899044 None:intergenic 30.0%
TTCTTATAAGAAATTAGGGC+AGG + chr2.2:3896820-3896839 MS.gene052012:intron 30.0%
TTGGGGCCAAAAATTATAAA+GGG + chr2.2:3897313-3897332 MS.gene052012:intron 30.0%
! ATTTTGCCAGGCAAATATTT+TGG + chr2.2:3898788-3898807 MS.gene052012:intron 30.0%
! GATTTTGTGCAAAGTCTTTT+TGG + chr2.2:3896750-3896769 MS.gene052012:intron 30.0%
! GGAGATCCCTTTATAATTTT+TGG - chr2.2:3897322-3897341 None:intergenic 30.0%
! TTTTTATGCAATTTCCAGAG+TGG + chr2.2:3898927-3898946 MS.gene052012:intron 30.0%
!! ATTAGCAACTTTGACTTGTA+TGG + chr2.2:3896927-3896946 MS.gene052012:intron 30.0%
!! TTACCTATTTTTCATGTGTG+TGG - chr2.2:3898668-3898687 None:intergenic 30.0%
!! TTTCTAGAACTGCAAATAAC+TGG - chr2.2:3898245-3898264 None:intergenic 30.0%
!!! ATCGGTTTTATTTGTTGAAG+TGG + chr2.2:3896860-3896879 MS.gene052012:intron 30.0%
!!! GTTTTATTTGTTGAAGTGGA+GGG + chr2.2:3896864-3896883 MS.gene052012:intron 30.0%
AAAACCAAAAGGCCCTTAAA+TGG + chr2.2:3898412-3898431 MS.gene052012:intron 35.0%
AAACCAAAAGGCCCTTAAAT+GGG + chr2.2:3898413-3898432 MS.gene052012:intron 35.0%
AAACCATAGGGTTTCCAAAA+AGG + chr2.2:3897486-3897505 MS.gene052012:intron 35.0%
AACAAATATGTAAGACGTGG+GGG - chr2.2:3898909-3898928 None:intergenic 35.0%
AATAGGTAAAATTACTCCCG+GGG + chr2.2:3898679-3898698 MS.gene052012:intron 35.0%
AATTCATATGCTACACGTGT+TGG + chr2.2:3897930-3897949 MS.gene052012:CDS 35.0%
ACAATTGATGAACCCTACAT+CGG + chr2.2:3897867-3897886 MS.gene052012:CDS 35.0%
ATGCACTTAACTTAGAGTGT+TGG + chr2.2:3898706-3898725 MS.gene052012:intron 35.0%
ATGGAAGCTAAAGAACAAGA+GGG + chr2.2:3899107-3899126 MS.gene052012:CDS 35.0%
CAAGTCAAAGTTGCTAATAC+AGG - chr2.2:3896925-3896944 None:intergenic 35.0%
CTAATTTACGTTGAGTCTCA+AGG - chr2.2:3897154-3897173 None:intergenic 35.0%
CTCAATAGTTCCTGTAACAT+CGG + chr2.2:3897836-3897855 MS.gene052012:CDS 35.0%
CTTATAAGAAATTAGGGCAG+GGG + chr2.2:3896822-3896841 MS.gene052012:intron 35.0%
CTTCGTTTATGAGCAATATC+CGG + chr2.2:3898205-3898224 MS.gene052012:CDS 35.0%
CTTGGGGCCAAAAATTATAA+AGG + chr2.2:3897312-3897331 MS.gene052012:intron 35.0%
GCATTAGCAAATGCTACTAT+TGG + chr2.2:3897693-3897712 MS.gene052012:CDS 35.0%
GGAAAAGATTGTAAGGCAAA+GGG + chr2.2:3898058-3898077 MS.gene052012:CDS 35.0%
TAAATTAATAACGTCGGGAC+TGG + chr2.2:3896987-3897006 MS.gene052012:intron 35.0%
TAAGTAAGCTCTCAAGATCA+AGG + chr2.2:3897967-3897986 MS.gene052012:CDS 35.0%
TTTGCACAAAATCAAAGCGA+AGG - chr2.2:3896743-3896762 None:intergenic 35.0%
! AAATCGATACTTCGAGTTTC+TGG + chr2.2:3898761-3898780 MS.gene052012:intron 35.0%
! AGAAAAGTGTATGGTCTGTT+TGG + chr2.2:3898260-3898279 MS.gene052012:intron 35.0%
! CAAGTCAAGGTTCCTTTTAT+AGG - chr2.2:3899012-3899031 None:intergenic 35.0%
! CTTGTTATATGAGTACATCG+AGG + chr2.2:3899028-3899047 MS.gene052012:CDS 35.0%
! GCTCTAGTTTGTAACAAAGA+AGG + chr2.2:3898014-3898033 MS.gene052012:CDS 35.0%
! GTAATAACCATCTGGAATTC+TGG + chr2.2:3896490-3896509 MS.gene052012:CDS 35.0%
!! AGAAACTCGAAGTATCGATT+TGG - chr2.2:3898762-3898781 None:intergenic 35.0%
!! GAAACTCGAAGTATCGATTT+GGG - chr2.2:3898761-3898780 None:intergenic 35.0%
!! TATCCTTTTTGGAAACCCTA+TGG - chr2.2:3897492-3897511 None:intergenic 35.0%
!! TGCAGTTCTAGAAAAGTGTA+TGG + chr2.2:3898251-3898270 MS.gene052012:intron 35.0%
!!! CAAATTTTTTGTTGGTGCAG+TGG + chr2.2:3897638-3897657 MS.gene052012:intron 35.0%
!!! GGTTTTATTTGTTGAAGTGG+AGG + chr2.2:3896863-3896882 MS.gene052012:intron 35.0%
AAAGCTTAATGGCATCCAGA+TGG - chr2.2:3896591-3896610 None:intergenic 40.0%
AAATGCATGTGCTTCAGCTT+CGG - chr2.2:3897907-3897926 None:intergenic 40.0%
ACAAATATGTAAGACGTGGG+GGG - chr2.2:3898908-3898927 None:intergenic 40.0%
ACAAGAGGGTCAGTTTCAAT+TGG + chr2.2:3899121-3899140 MS.gene052012:CDS 40.0%
ACAAGCGGGAAAAGATTGTA+AGG + chr2.2:3898051-3898070 MS.gene052012:CDS 40.0%
ACTACTGTGTTCACATGCAT+TGG + chr2.2:3897176-3897195 MS.gene052012:intron 40.0%
ACTGGTAGAACATGACTAAC+CGG - chr2.2:3898227-3898246 None:intergenic 40.0%
AGCAAATGCTACTATTGGAG+AGG + chr2.2:3897698-3897717 MS.gene052012:CDS 40.0%
AGCGAGCTGAAACCTATAAA+AGG + chr2.2:3898997-3899016 MS.gene052012:CDS 40.0%
ATAGGTAAAATTACTCCCGG+GGG + chr2.2:3898680-3898699 MS.gene052012:intron 40.0%
CAGGAACTATTGAGGTGATT+TGG - chr2.2:3897830-3897849 None:intergenic 40.0%
CGATGTTACAGGAACTATTG+AGG - chr2.2:3897838-3897857 None:intergenic 40.0%
CTGTTGCCAAAATATTTGCC+TGG - chr2.2:3898797-3898816 None:intergenic 40.0%
GATGGAAGCTAAAGAACAAG+AGG + chr2.2:3899106-3899125 MS.gene052012:CDS 40.0%
GGGAAAAGATTGTAAGGCAA+AGG + chr2.2:3898057-3898076 MS.gene052012:CDS 40.0%
GTTCTCATAACCGATGTTAC+AGG - chr2.2:3897849-3897868 None:intergenic 40.0%
TCGAGAACTAACTCAACAGT+TGG + chr2.2:3898962-3898981 MS.gene052012:CDS 40.0%
TCTTGATCCTGTTCATCAGT+TGG - chr2.2:3897774-3897793 None:intergenic 40.0%
TTTCGATCCAACTGATGAAC+AGG + chr2.2:3897764-3897783 MS.gene052012:CDS 40.0%
! TTTTTACATTGGCCCAAGTC+AGG + chr2.2:3897382-3897401 MS.gene052012:intron 40.0%
!!! GTTTCTGGAGTAATTTTGCC+AGG + chr2.2:3898776-3898795 MS.gene052012:intron 40.0%
AAATATGTAAGACGTGGGGG+GGG - chr2.2:3898906-3898925 None:intergenic 45.0%
AAATTTGTCCGGTCCTGACT+TGG - chr2.2:3897398-3897417 None:intergenic 45.0%
AAGGCAAAGGGCAGAAACAA+GGG + chr2.2:3898070-3898089 MS.gene052012:CDS 45.0%
AAGTTAAGTGCATAGACCCC+CGG - chr2.2:3898699-3898718 None:intergenic 45.0%
AATTTGTCCGGTCCTGACTT+GGG - chr2.2:3897397-3897416 None:intergenic 45.0%
CAAATATGTAAGACGTGGGG+GGG - chr2.2:3898907-3898926 None:intergenic 45.0%
GTTTCAGAATGCCTGACAAG+CGG + chr2.2:3898036-3898055 MS.gene052012:CDS 45.0%
TAAGGCAAAGGGCAGAAACA+AGG + chr2.2:3898069-3898088 MS.gene052012:CDS 45.0%
TGCTAATGCCTCACCATTAC+TGG - chr2.2:3897682-3897701 None:intergenic 45.0%
TGGTTGCAGGGCAATGATTA+TGG + chr2.2:3898094-3898113 MS.gene052012:CDS 45.0%
TTTCAGAATGCCTGACAAGC+GGG + chr2.2:3898037-3898056 MS.gene052012:CDS 45.0%
! ACAATCTTTTCCCGCTTGTC+AGG - chr2.2:3898050-3898069 None:intergenic 45.0%
! AGTAGAGAGTGTGAAGGAGA+TGG + chr2.2:3899088-3899107 MS.gene052012:CDS 45.0%
! ATGCCCATTTAAGGGCCTTT+TGG - chr2.2:3898419-3898438 None:intergenic 45.0%
! GACTCAAGATTCTTCTGGAG+TGG + chr2.2:3897803-3897822 MS.gene052012:CDS 45.0%
! GAGATTGGTGACTCCAGTAA+TGG + chr2.2:3897666-3897685 MS.gene052012:CDS 45.0%
! GCACATAGTAGAGAGTGTGA+AGG + chr2.2:3899082-3899101 MS.gene052012:CDS 45.0%
! TGATGGATCTGTTATTGGGC+GGG + chr2.2:3897992-3898011 MS.gene052012:CDS 45.0%
!! AGAAACAAGGGTTGGTTGCA+GGG + chr2.2:3898082-3898101 MS.gene052012:CDS 45.0%
!! AGGCGTGATGGATCTGTTAT+TGG + chr2.2:3897987-3898006 MS.gene052012:CDS 45.0%
!! GGCGTGATGGATCTGTTATT+GGG + chr2.2:3897988-3898007 MS.gene052012:CDS 45.0%
!! GTGATGGATCTGTTATTGGG+CGG + chr2.2:3897991-3898010 MS.gene052012:CDS 45.0%
!!! TAATAAGATAATAATTTTTT+CGG - chr2.2:3897343-3897362 None:intergenic 5.0%
AATATGTAAGACGTGGGGGG+GGG - chr2.2:3898905-3898924 None:intergenic 50.0%
ACAAACTCCTGGCCGATGTA+GGG - chr2.2:3897882-3897901 None:intergenic 50.0%
ACGGCATCCAGAATTCCAGA+TGG - chr2.2:3896500-3896519 None:intergenic 50.0%
AGTTAAGTGCATAGACCCCC+GGG - chr2.2:3898698-3898717 None:intergenic 50.0%
CAAAGGGCAGAAACAAGGGT+TGG + chr2.2:3898074-3898093 MS.gene052012:CDS 50.0%
CAGCTTCGGATACAAACTCC+TGG - chr2.2:3897893-3897912 None:intergenic 50.0%
CCGAGTGATACTCTACAGAG+CGG - chr2.2:3897601-3897620 None:intergenic 50.0%
CTCTCAAGATCAAGGCGTGA+TGG + chr2.2:3897975-3897994 MS.gene052012:CDS 50.0%
GCAGGGCAATGATTATGGTG+AGG + chr2.2:3898099-3898118 MS.gene052012:CDS 50.0%
GGTGCAGTGGAGATTGAGAT+TGG + chr2.2:3897651-3897670 MS.gene052012:intron 50.0%
TACAAACTCCTGGCCGATGT+AGG - chr2.2:3897883-3897902 None:intergenic 50.0%
TGGTGACTCCAGTAATGGTG+AGG + chr2.2:3897671-3897690 MS.gene052012:CDS 50.0%
! CCGCTCTGTAGAGTATCACT+CGG + chr2.2:3897598-3897617 MS.gene052012:intron 50.0%
!! CAGAAACAAGGGTTGGTTGC+AGG + chr2.2:3898081-3898100 MS.gene052012:CDS 50.0%
AAGTCCCTTCTGCCTCTTCC+AGG - chr2.2:3898188-3898207 None:intergenic 55.0%
ACATTGGCCCAAGTCAGGAC+CGG + chr2.2:3897387-3897406 MS.gene052012:intron 55.0%
ATATGTAAGACGTGGGGGGG+GGG - chr2.2:3898904-3898923 None:intergenic 55.0%
CACACACATCCTCTGACACC+TGG + chr2.2:3898167-3898186 MS.gene052012:CDS 55.0%
CATCCTCTGACACCTGGAAG+AGG + chr2.2:3898173-3898192 MS.gene052012:CDS 55.0%
GAACTCTGTCGTGTCCACTC+TGG - chr2.2:3898944-3898963 None:intergenic 55.0%
GACACCTGGAAGAGGCAGAA+GGG + chr2.2:3898181-3898200 MS.gene052012:CDS 55.0%
TGACACCTGGAAGAGGCAGA+AGG + chr2.2:3898180-3898199 MS.gene052012:CDS 55.0%
TGATGAACCCTACATCGGCC+AGG + chr2.2:3897872-3897891 MS.gene052012:CDS 55.0%
CTGCCTCTTCCAGGTGTCAG+AGG - chr2.2:3898179-3898198 None:intergenic 60.0%
TATGTAAGACGTGGGGGGGG+GGG - chr2.2:3898903-3898922 None:intergenic 60.0%
ATGTAAGACGTGGGGGGGGG+GGG - chr2.2:3898902-3898921 None:intergenic 65.0%
GGGGGGGGGGAACTGAAAAG+GGG - chr2.2:3898876-3898895 None:intergenic 65.0%
GGGGGGGGGGGAACTGAAAA+GGG - chr2.2:3898877-3898896 None:intergenic 65.0%
GGGGGGGGGGGGAACTGAAA+AGG - chr2.2:3898878-3898897 None:intergenic 70.0%
TGTAAGACGTGGGGGGGGGG+GGG - chr2.2:3898901-3898920 None:intergenic 70.0%
GTAAGACGTGGGGGGGGGGG+GGG - chr2.2:3898900-3898919 None:intergenic 75.0%
TAAGACGTGGGGGGGGGGGG+GGG - chr2.2:3898899-3898918 None:intergenic 75.0%
! AAGACGTGGGGGGGGGGGGG+GGG - chr2.2:3898898-3898917 None:intergenic 80.0%
! AGACGTGGGGGGGGGGGGGG+GGG - chr2.2:3898897-3898916 None:intergenic 85.0%
! ACGTGGGGGGGGGGGGGGGG+GGG - chr2.2:3898895-3898914 None:intergenic 90.0%
! GACGTGGGGGGGGGGGGGGG+GGG - chr2.2:3898896-3898915 None:intergenic 90.0%
! CGTGGGGGGGGGGGGGGGGG+GGG - chr2.2:3898894-3898913 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG - chr2.2:3898893-3898912 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr2.2:3898892-3898911 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3896457 3899154 3896457 ID=MS.gene052012
chr2.2 mRNA 3896457 3899154 3896457 ID=MS.gene052012.t1;Parent=MS.gene052012
chr2.2 exon 3896457 3896517 3896457 ID=MS.gene052012.t1.exon1;Parent=MS.gene052012.t1
chr2.2 CDS 3896457 3896517 3896457 ID=cds.MS.gene052012.t1;Parent=MS.gene052012.t1
chr2.2 exon 3897658 3898226 3897658 ID=MS.gene052012.t1.exon2;Parent=MS.gene052012.t1
chr2.2 CDS 3897658 3898226 3897658 ID=cds.MS.gene052012.t1;Parent=MS.gene052012.t1
chr2.2 exon 3898945 3899154 3898945 ID=MS.gene052012.t1.exon3;Parent=MS.gene052012.t1
chr2.2 CDS 3898945 3899154 3898945 ID=cds.MS.gene052012.t1;Parent=MS.gene052012.t1
Gene Sequence

>MS.gene052012

ATGAAGAACATATTTTTGAGACCTTATAACTCAGTAATAACCATCTGGAATTCTGGATGCCGTTAAGTTTTATCAAATCCAAAATTTATTAATCTATTAAGATTAAGTTTTTTTCAAAAATATGAAAATAACCATCTGGATGCCATTAAGCTTTACCTAAAGATTGTCAATTTTTTTCTTTTTCTTTTTTTCATTTAGGTTTTTGGGCTTTGTTATATTTGTTTTAAGTTGACTGATCTTTATGGCATGTTTGTTGTTGTACTTCAGAAATATGTGAATTTTTCCTTCGCTTTGATTTTGTGCAAAGTCTTTTTGGATTCAGCATGCTAACTTAACTAGTAATCGGTTTTATTTGTTTTTTTTTTCTTATAAGAAATTAGGGCAGGGGAAATTATTATTAATAATCGGTTTTATTTGTTGAAGTGGAGGGTATTTGTCAAATATTTAGTGTCATTCATAGGGTTTCCTGTATTAGCAACTTTGACTTGTATGGTTTTCTCTCTTTGATTCATTGTACAGTAAAAACTCTATAAATTAATAACGTCGGGACTGGAGAAATTTATTAATTTAAAGGGTTATTAATTTATCGATAAATTAATAATTATTAATTTAAAGAGTTTTTAAGTAATTATACTGTACATACCAAATAAAAAGGCAAATTAGTCTATGTCTCTTAGAATTACGTTGCAGCGAACCTTGAGACTCAACGTAAATTAGTAACTACTGTGTTCACATGCATTGGAAAACAATAATGACTTTTGAAGTACAGTAAATGTAAACAAGAGGAACAAATGTGTTCAATGTATTCTTAATATATTTTTTTTCAGTTTCTATGAATTATTAATTTATGATTTACTTGGGGCCAAAAATTATAAAGGGATCTCCGAAAAAATTATTATCTTATTATTTTATCGAGTTTTTCAATTTTTTACATTGGCCCAAGTCAGGACCGGACAAATTTATTATTTTAGAGAGTTTATTAATTTACCGAGTATTAAATTAAAGAGTTTCTACTGTAGTATTTAGTTTAAACCATAGGGTTTCCAAAAAGGATAATTTTGGAATTAATACGATATGTTTCTTCTTCAGTTCTTTCATAATTTTTATCATCACTGAAGCAGCATTTCATCTATTTTATACACCGCTCTGTAGAGTATCACTCGGCAATGAAAGTCTTATATCAAATTTTTTGTTGGTGCAGTGGAGATTGAGATTGGTGACTCCAGTAATGGTGAGGCATTAGCAAATGCTACTATTGGAGAGGTCAATAGTAGCATAGCTGACAAAGAAATAATTGAATGCAGTTCTTTCGATCCAACTGATGAACAGGATCAAGATGATAATATGACTCAAGATTCTTCTGGAGTGGACCAAATCACCTCAATAGTTCCTGTAACATCGGTTATGAGAACAATTGATGAACCCTACATCGGCCAGGAGTTTGTATCCGAAGCTGAAGCACATGCATTTTATAATTCATATGCTACACGTGTTGGATTCGTCATACGTGTAAGTAAGCTCTCAAGATCAAGGCGTGATGGATCTGTTATTGGGCGGGCTCTAGTTTGTAACAAAGAAGGTTTCAGAATGCCTGACAAGCGGGAAAAGATTGTAAGGCAAAGGGCAGAAACAAGGGTTGGTTGCAGGGCAATGATTATGGTGAGGAAATTAAATTCTGGTCTATGGTCTATAACAAAGTTTGTAAAAGAGCACACACATCCTCTGACACCTGGAAGAGGCAGAAGGGACTTCGTTTATGAGCAATATCCGGTTAGTCATGTTCTACCAGTTATTTGCAGTTCTAGAAAAGTGTATGGTCTGTTTGGTTTATGTCCCCTTTCTCTTTTTTCACTCTTTCCTGTACAAATCTTTATTTAAAAACATGAAACATAGTAAAACAGTGTGGCATTTTTATTAAAAGTGAAAAGATTAAATGAAAGGAGAGATGGAAATAAAAAACCAAAAGGCCCTTAAATGGGCATAGTTTTTTATTTTTTACAATGAAAAATCATCGAGGTACTTCTGAAACCATTAGAATTTAAAGGATCTCATCACTGATTTTTATTAAGATGTTCATCAATCATATTTGTAGTACTGTTTATAACTTACACTTGTTTATGCAAGAAGAGAAACTAACCAAAGACTTCAATGTTTATATCTATGCTTATTGATTTCCATTTTAATTTATCTTCGAGGTTCTGTATCAATCCACACACATGAAAAATAGGTAAAATTACTCCCGGGGGTCTATGCACTTAACTTAGAGTGTTGGATTAGTTCTTTAACTCTCTTTTTTATCTTCCCAAATCGATACTTCGAGTTTCTGGAGTAATTTTGCCAGGCAAATATTTTGGCAACAGCAAATTGATACTTATGTACAAGTAACTTGAGCAATTCATGTTACATGTCTTTGGGACCCCTTTTCAGTTCCCCCCCCCCCCCCCCCCCCCCCCCACGTCTTACATATTTGTTTTTATGCAATTTCCAGAGTGGACACGACAGAGTTCGAGAACTAACTCAACAGTTGGCTATAGAGAAAAAGCGAGCTGAAACCTATAAAAGGAACCTTGACTTGTTATATGAGTACATCGAGGAGCATAATGAAGCTGTTTCAAAGAAGATACAGCACATAGTAGAGAGTGTGAAGGAGATGGAAGCTAAAGAACAAGAGGGTCAGTTTCAATTGGCTGTTATCTAG

Protein sequence

>MS.gene052012.t1

MKNIFLRPYNSVITIWNSGCLEIEIGDSSNGEALANATIGEVNSSIADKEIIECSSFDPTDEQDQDDNMTQDSSGVDQITSIVPVTSVMRTIDEPYIGQEFVSEAEAHAFYNSYATRVGFVIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTPGRGRRDFVYEQYPSGHDRVRELTQQLAIEKKRAETYKRNLDLLYEYIEEHNEAVSKKIQHIVESVKEMEAKEQEGQFQLAVI