Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09086.t1 | XP_003629721.2 | 91.7 | 519 | 39 | 1 | 4 | 518 | 1 | 519 | 8.10E-292 | 1012.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09086.t1 | Q8W496 | 56.2 | 491 | 171 | 10 | 1 | 455 | 1 | 483 | 4.1e-167 | 589.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09086.t1 | A0A396GSW2 | 91.7 | 519 | 39 | 1 | 4 | 518 | 1 | 519 | 5.8e-292 | 1012.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene09086 | 0.805669 | 1.19E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene09086 | 0.845115 | 4.97E-59 | -1.69E-46 |
| MS.gene050581 | MS.gene09086 | 0.839985 | 1.14E-57 | -1.69E-46 |
| MS.gene054010 | MS.gene09086 | 0.869348 | 3.31E-66 | -1.69E-46 |
| MS.gene054011 | MS.gene09086 | 0.849748 | 2.65E-60 | -1.69E-46 |
| MS.gene054012 | MS.gene09086 | 0.865569 | 5.37E-65 | -1.69E-46 |
| MS.gene054013 | MS.gene09086 | 0.864666 | 1.03E-64 | -1.69E-46 |
| MS.gene054214 | MS.gene09086 | 0.815142 | 1.08E-51 | -1.69E-46 |
| MS.gene055604 | MS.gene09086 | 0.830606 | 2.67E-55 | -1.69E-46 |
| MS.gene056902 | MS.gene09086 | 0.842688 | 2.22E-58 | -1.69E-46 |
| MS.gene059974 | MS.gene09086 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene060005 | MS.gene09086 | 0.815627 | 8.39E-52 | -1.69E-46 |
| MS.gene060800 | MS.gene09086 | 0.838732 | 2.41E-57 | -1.69E-46 |
| MS.gene060801 | MS.gene09086 | 0.814312 | 1.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09086.t1 | MTR_8g085790 | 91.919 | 495 | 36 | 1 | 28 | 518 | 1 | 495 | 0.0 | 956 |
| MS.gene09086.t1 | MTR_8g085840 | 87.524 | 521 | 58 | 3 | 4 | 518 | 1 | 520 | 0.0 | 950 |
| MS.gene09086.t1 | MTR_8g085820 | 87.910 | 488 | 56 | 2 | 28 | 513 | 1 | 487 | 0.0 | 904 |
| MS.gene09086.t1 | MTR_8g085790 | 92.388 | 381 | 29 | 0 | 4 | 384 | 1 | 381 | 0.0 | 744 |
| MS.gene09086.t1 | MTR_4g057200 | 37.819 | 431 | 220 | 16 | 81 | 482 | 89 | 500 | 3.90e-84 | 271 |
| MS.gene09086.t1 | MTR_3g105820 | 27.637 | 474 | 266 | 13 | 44 | 467 | 46 | 492 | 2.32e-48 | 176 |
| MS.gene09086.t1 | MTR_8g085810 | 62.162 | 74 | 25 | 1 | 389 | 462 | 1 | 71 | 1.76e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09086.t1 | AT4G25650 | 58.131 | 535 | 197 | 10 | 1 | 517 | 1 | 526 | 0.0 | 630 |
| MS.gene09086.t1 | AT4G25650 | 56.014 | 557 | 197 | 11 | 1 | 517 | 1 | 549 | 0.0 | 622 |
| MS.gene09086.t1 | AT3G44880 | 35.200 | 500 | 265 | 19 | 53 | 517 | 51 | 526 | 1.16e-82 | 266 |
| MS.gene09086.t1 | AT2G24820 | 28.478 | 460 | 255 | 12 | 52 | 467 | 50 | 479 | 7.31e-50 | 179 |
| MS.gene09086.t1 | AT1G44446 | 22.276 | 413 | 227 | 20 | 58 | 433 | 79 | 434 | 9.62e-13 | 70.5 |
| MS.gene09086.t1 | AT1G44446 | 22.276 | 413 | 227 | 20 | 58 | 433 | 181 | 536 | 1.48e-12 | 70.5 |
| MS.gene09086.t1 | AT1G44446 | 25.225 | 222 | 113 | 9 | 58 | 256 | 181 | 372 | 6.08e-11 | 65.1 |
Find 126 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAACCTGTTTCAACTTC+TGG | 0.199220 | 4.4:-14232032 | None:intergenic |
| TCCATCATTTGCTAGCTTAA+TGG | 0.218538 | 4.4:+14232788 | MS.gene09086:CDS |
| TTGAATCGAGGATCAGTATT+TGG | 0.226374 | 4.4:-14232717 | None:intergenic |
| TGGTGCTTTCCGAGAAATTT+TGG | 0.234178 | 4.4:+14233785 | MS.gene09086:CDS |
| CCATCATTTGCTAGCTTAAT+GGG | 0.262213 | 4.4:+14232789 | MS.gene09086:CDS |
| AGAATAATATCTTGTGGTTT+TGG | 0.262792 | 4.4:+14232694 | MS.gene09086:CDS |
| CACCACATTGAGGCTCTTAT+AGG | 0.282231 | 4.4:-14234832 | None:intergenic |
| ATCATATCAGTTGCTTCAAT+TGG | 0.287082 | 4.4:+14234870 | MS.gene09086:CDS |
| AATGATGGATCATCAATTTC+TGG | 0.296431 | 4.4:-14232774 | None:intergenic |
| TGGATGCTGGTCAAGAAAAT+TGG | 0.301039 | 4.4:+14234135 | MS.gene09086:CDS |
| CAATGGTTTCACTGCAAATC+AGG | 0.316257 | 4.4:+14233527 | MS.gene09086:CDS |
| GGAAACAGAGATATTCCTTA+TGG | 0.335690 | 4.4:+14232810 | MS.gene09086:CDS |
| CTAGTTACCGGAGGTCCTTC+AGG | 0.340658 | 4.4:-14232326 | None:intergenic |
| TGGGAATTGATGTTGTTATA+TGG | 0.344667 | 4.4:+14232138 | MS.gene09086:CDS |
| GAAGTGTTCCCACGGATTAA+TGG | 0.348211 | 4.4:-14231930 | None:intergenic |
| CTACTACTAGAATCTGTTAA+TGG | 0.354981 | 4.4:-14231987 | None:intergenic |
| GTGGAACCTGTGAAGGTTCT+TGG | 0.358537 | 4.4:+14235272 | MS.gene09086:intron |
| ACAGAAGATGCAAGTTCATC+TGG | 0.362015 | 4.4:-14233603 | None:intergenic |
| ACCTCCTAGAGAACAGCTTA+TGG | 0.373079 | 4.4:+14234283 | MS.gene09086:CDS |
| TGCCTTTGTTGGCACAAAAC+AGG | 0.379469 | 4.4:-14234165 | None:intergenic |
| AAGGCAGATGCTCTTGTGAT+TGG | 0.399532 | 4.4:+14234182 | MS.gene09086:CDS |
| CTGGTTCATCATCCACTTCA+AGG | 0.399812 | 4.4:-14232013 | None:intergenic |
| TGCATCTTCTGTTGAAACTA+AGG | 0.404424 | 4.4:+14233614 | MS.gene09086:CDS |
| GTTAATCCATAGTGTGCATA+TGG | 0.414358 | 4.4:-14233340 | None:intergenic |
| CCCATTAAGCTAGCAAATGA+TGG | 0.416361 | 4.4:-14232789 | None:intergenic |
| ACAAGAGCATCTGCCTTTGT+TGG | 0.416937 | 4.4:-14234176 | None:intergenic |
| ATATTATTCTGCACAATGCT+TGG | 0.417838 | 4.4:-14232681 | None:intergenic |
| ATTGAAGAGTTAGATATCAA+TGG | 0.427054 | 4.4:+14233510 | MS.gene09086:CDS |
| CATCAATTTCTGGTATGAAT+GGG | 0.432152 | 4.4:-14232764 | None:intergenic |
| TCATCAATTTCTGGTATGAA+TGG | 0.435029 | 4.4:-14232765 | None:intergenic |
| CTGGTAATAGTAGACTGATT+TGG | 0.436210 | 4.4:+14233765 | MS.gene09086:CDS |
| TGAAGGAAGGATTGATCAAT+GGG | 0.437126 | 4.4:+14232229 | MS.gene09086:CDS |
| ACCCACAGTCCAAAATTTCT+CGG | 0.439221 | 4.4:-14233794 | None:intergenic |
| AAGAAATTCTATAGTTGTGC+TGG | 0.439574 | 4.4:+14234935 | MS.gene09086:CDS |
| CATGTTCCATATGCACACTA+TGG | 0.450961 | 4.4:+14233334 | MS.gene09086:CDS |
| GATTGGAGAGGAAAATATAG+TGG | 0.451279 | 4.4:+14234245 | MS.gene09086:CDS |
| ATTTGTATTCCTGTGAGTCC+TGG | 0.453411 | 4.4:+14233746 | MS.gene09086:CDS |
| CAATATGTGATCTTGACAAA+AGG | 0.457440 | 4.4:+14232093 | MS.gene09086:CDS |
| GATGAACCAGAAGTTGAAAC+AGG | 0.463226 | 4.4:+14232026 | MS.gene09086:CDS |
| TCATATCAGTTGCTTCAATT+GGG | 0.473164 | 4.4:+14234871 | MS.gene09086:CDS |
| TAATGCAGAAATCATCCGTT+CGG | 0.475564 | 4.4:+14233702 | MS.gene09086:intron |
| GAAACAGAGATATTCCTTAT+GGG | 0.476962 | 4.4:+14232811 | MS.gene09086:CDS |
| GATTGTTGCCGCAATAAAGC+AGG | 0.480412 | 4.4:+14234893 | MS.gene09086:CDS |
| CTGAAGGAAGGATTGATCAA+TGG | 0.483984 | 4.4:+14232228 | MS.gene09086:CDS |
| ATGCAGGTGATCAAGTTGAT+TGG | 0.490731 | 4.4:+14234228 | MS.gene09086:CDS |
| TGATTGCAAGTTCATTCCTC+AGG | 0.492594 | 4.4:+14232298 | MS.gene09086:CDS |
| AATAATGCTGATAGAGAAGG+AGG | 0.493895 | 4.4:+14233468 | MS.gene09086:CDS |
| ATTGGAGAGGAAAATATAGT+GGG | 0.516950 | 4.4:+14234246 | MS.gene09086:CDS |
| AAGGGCACCTCATGCTAAGA+AGG | 0.517511 | 4.4:+14232112 | MS.gene09086:CDS |
| AAATTAAAATCATACCCATA+AGG | 0.517619 | 4.4:-14232825 | None:intergenic |
| TATAAATAAAAGATGCTTGG+TGG | 0.517953 | 4.4:-14233573 | None:intergenic |
| CTATATAAATAAAAGATGCT+TGG | 0.518931 | 4.4:-14233576 | None:intergenic |
| GGCACCTCCTGAAGGACCTC+CGG | 0.521757 | 4.4:+14232319 | MS.gene09086:CDS |
| AACTCTTGCAATTCACCGTA+TGG | 0.523296 | 4.4:-14234800 | None:intergenic |
| AATATGTGATCTTGACAAAA+GGG | 0.523473 | 4.4:+14232094 | MS.gene09086:CDS |
| AAATGGTTAAAGAAGTATGC+AGG | 0.524010 | 4.4:+14234212 | MS.gene09086:CDS |
| CTAGAATCTGTTAATGGAGA+AGG | 0.526969 | 4.4:-14231981 | None:intergenic |
| AGATCACATATTGGCATCAA+AGG | 0.530584 | 4.4:-14232083 | None:intergenic |
| GTTTCACTGCAAATCAGGGT+TGG | 0.531039 | 4.4:+14233532 | MS.gene09086:CDS |
| TTTATATCTTCTCCATGTTG+AGG | 0.531042 | 4.4:+14233877 | MS.gene09086:CDS |
| AATGGTTTCACTGCAAATCA+GGG | 0.531344 | 4.4:+14233528 | MS.gene09086:CDS |
| ACCGCGATGGATTCTTCATG+TGG | 0.533829 | 4.4:+14233829 | MS.gene09086:CDS |
| CTGTCCATAAGCTGTTCTCT+AGG | 0.535255 | 4.4:-14234287 | None:intergenic |
| TGGTCAAGAAAATTGGCATA+AGG | 0.536911 | 4.4:+14234142 | MS.gene09086:CDS |
| TATATGGTGGGATAGGAATG+AGG | 0.538426 | 4.4:+14232154 | MS.gene09086:CDS |
| TGCCGCAATAAAGCAGGGAA+TGG | 0.543982 | 4.4:+14234899 | MS.gene09086:CDS |
| AGATTAGCACCTTTGTCTGA+AGG | 0.545291 | 4.4:+14232212 | MS.gene09086:CDS |
| CAAATCAGTCTACTATTACC+AGG | 0.545513 | 4.4:-14233764 | None:intergenic |
| GACAAAGGTGCTAATCTATG+AGG | 0.545842 | 4.4:-14232206 | None:intergenic |
| TAGCACCTTTGTCTGAAGGA+AGG | 0.548699 | 4.4:+14232216 | MS.gene09086:CDS |
| ATTCCTCAGGCACCTCCTGA+AGG | 0.548802 | 4.4:+14232311 | MS.gene09086:CDS |
| ACCTCATGCTAAGAAGGTGA+TGG | 0.549823 | 4.4:+14232118 | MS.gene09086:CDS |
| AGGTTACAGTGTGTGTATCA+TGG | 0.551337 | 4.4:+14232254 | MS.gene09086:CDS |
| CTACTATTACCAGGACTCAC+AGG | 0.551379 | 4.4:-14233755 | None:intergenic |
| AACCATTCCCTGCTTTATTG+CGG | 0.555375 | 4.4:-14234901 | None:intergenic |
| CATAGAAAATTTCTTCCGAA+CGG | 0.556398 | 4.4:-14233717 | None:intergenic |
| GGATTAACTCCAGACCCAAA+AGG | 0.558427 | 4.4:+14233355 | MS.gene09086:CDS |
| TAGTAGTAGTAACCTTGAAG+TGG | 0.559062 | 4.4:+14232001 | MS.gene09086:CDS |
| CTAGAGAACAGCTTATGGAC+AGG | 0.559328 | 4.4:+14234288 | MS.gene09086:CDS |
| GGGATAGGAATGAGGGTGCA+TGG | 0.563269 | 4.4:+14232162 | MS.gene09086:CDS |
| ATCAATTTCTGGTATGAATG+GGG | 0.563979 | 4.4:-14232763 | None:intergenic |
| GATTCAAAGATATTATTACA+AGG | 0.564688 | 4.4:+14232733 | MS.gene09086:CDS |
| GTGAATAATGCTGATAGAGA+AGG | 0.565634 | 4.4:+14233465 | MS.gene09086:intron |
| TACAGTGTGTGTATCATGGT+TGG | 0.568463 | 4.4:+14232258 | MS.gene09086:CDS |
| ATGTTGTTATATGGTGGGAT+AGG | 0.569147 | 4.4:+14232147 | MS.gene09086:CDS |
| GAAGGATTGATCAATGGGGT+AGG | 0.572052 | 4.4:+14232234 | MS.gene09086:CDS |
| CAACACTTCCATTAATCCGT+GGG | 0.573800 | 4.4:+14231922 | MS.gene09086:CDS |
| CCCATCACCTTCTTAGCATG+AGG | 0.577710 | 4.4:-14232119 | None:intergenic |
| TGTTCTCTAGGAGGTGTAGG+AGG | 0.578002 | 4.4:-14234275 | None:intergenic |
| AGCTGTTCTCTAGGAGGTGT+AGG | 0.578889 | 4.4:-14234278 | None:intergenic |
| TACTTTCATTCGCATTGTCG+CGG | 0.580974 | 4.4:+14234961 | MS.gene09086:CDS |
| CCTCATGCTAAGAAGGTGAT+GGG | 0.582338 | 4.4:+14232119 | MS.gene09086:CDS |
| TCAACACTTCCATTAATCCG+TGG | 0.582388 | 4.4:+14231921 | MS.gene09086:CDS |
| AATTGATGTTGTTATATGGT+GGG | 0.583888 | 4.4:+14232142 | MS.gene09086:CDS |
| CACTTGTGAGTTGAAGAACA+TGG | 0.584686 | 4.4:-14231895 | None:intergenic |
| GAATTGATGTTGTTATATGG+TGG | 0.587435 | 4.4:+14232141 | MS.gene09086:CDS |
| TCAATCCTTCCTTCAGACAA+AGG | 0.589654 | 4.4:-14232221 | None:intergenic |
| CAGGTTCAGAGAAATTTGAC+TGG | 0.594416 | 4.4:+14232045 | MS.gene09086:CDS |
| GTAATAATATCTTTGAATCG+AGG | 0.598480 | 4.4:-14232729 | None:intergenic |
| TCGACAAAATTGTACCGCGA+TGG | 0.598932 | 4.4:+14233816 | MS.gene09086:CDS |
| TCCATAAGCTGTTCTCTAGG+AGG | 0.599001 | 4.4:-14234284 | None:intergenic |
| TTGTGCAGAATAATATCTTG+TGG | 0.604851 | 4.4:+14232688 | MS.gene09086:CDS |
| GGTACTGATTGAAAACCTCA+TGG | 0.605597 | 4.4:+14233303 | MS.gene09086:CDS |
| TCTTCAATTGAGAAATCAAG+TGG | 0.606160 | 4.4:-14233495 | None:intergenic |
| ATATGGTGGGATAGGAATGA+GGG | 0.629185 | 4.4:+14232155 | MS.gene09086:CDS |
| CTATAAGAGCCTCAATGTGG+TGG | 0.632112 | 4.4:+14234833 | MS.gene09086:CDS |
| TGTGCATATGGAACATGTGA+AGG | 0.634120 | 4.4:-14233328 | None:intergenic |
| GGTCCTTCAGGAGGTGCCTG+AGG | 0.637367 | 4.4:-14232314 | None:intergenic |
| GAACAGGTACTGGAGCCATA+CGG | 0.641416 | 4.4:+14234785 | MS.gene09086:intron |
| GCATCACTTCCACCACATTG+AGG | 0.645928 | 4.4:-14234842 | None:intergenic |
| TAAAAGGAATTACCTCAACA+TGG | 0.650469 | 4.4:-14233889 | None:intergenic |
| TCAATTTCTGGTATGAATGG+GGG | 0.651927 | 4.4:-14232762 | None:intergenic |
| GGTGATCAAGTTGATTGGAG+AGG | 0.656464 | 4.4:+14234233 | MS.gene09086:CDS |
| AACATGCAATTTCAGGTACG+AGG | 0.660550 | 4.4:+14233282 | MS.gene09086:intron |
| ATTGTTGCCGCAATAAAGCA+GGG | 0.660696 | 4.4:+14234894 | MS.gene09086:CDS |
| GCTAGTGGGATGTGAAGTGA+AGG | 0.662430 | 4.4:-14231843 | None:intergenic |
| GTGCATATGGAACATGTGAA+GGG | 0.665250 | 4.4:-14233327 | None:intergenic |
| TGTTAATGGAGAAGGTGACA+AGG | 0.682450 | 4.4:-14231973 | None:intergenic |
| CCGCGATGGATTCTTCATGT+GGG | 0.687009 | 4.4:+14233830 | MS.gene09086:CDS |
| GAACATGTGAAGGGTCCATG+AGG | 0.693173 | 4.4:-14233318 | None:intergenic |
| AATTTGACTGGTACTCACAG+TGG | 0.710936 | 4.4:+14232057 | MS.gene09086:CDS |
| GTTACCGGAGGTCCTTCAGG+AGG | 0.716989 | 4.4:-14232323 | None:intergenic |
| AGCCTATAAGAGCCTCAATG+TGG | 0.719694 | 4.4:+14234830 | MS.gene09086:CDS |
| TTGGAGAGGAAAATATAGTG+GGG | 0.734428 | 4.4:+14234247 | MS.gene09086:CDS |
| CCCACATGAAGAATCCATCG+CGG | 0.771717 | 4.4:-14233830 | None:intergenic |
| GAAGGAAGGATTGATCAATG+GGG | 0.807729 | 4.4:+14232230 | MS.gene09086:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGACAAAATTATA+CGG | + | chr4.4:14233198-14233217 | MS.gene09086:intron | 10.0% |
| !! | AAAAACTTCACATATATTAA+AGG | - | chr4.4:14234389-14234408 | None:intergenic | 15.0% |
| !! | AAATGTCTCTTATAAATATA+GGG | - | chr4.4:14235109-14235128 | None:intergenic | 15.0% |
| !! | AGAAATTATTAAATTTGAAC+AGG | + | chr4.4:14234769-14234788 | MS.gene09086:intron | 15.0% |
| !! | ATAATTAAAATGTAGTTGTT+TGG | - | chr4.4:14233163-14233182 | None:intergenic | 15.0% |
| !!! | AAAAATGTTTGTTACTTAAA+GGG | + | chr4.4:14232383-14232402 | MS.gene09086:intron | 15.0% |
| !!! | ACAACTACATTTTAATTATA+CGG | + | chr4.4:14233164-14233183 | MS.gene09086:intron | 15.0% |
| !!! | GTATTTTTTTTCAATAGATT+AGG | + | chr4.4:14234060-14234079 | MS.gene09086:intron | 15.0% |
| !!! | TAATGTTACTAACTTTTTTT+AGG | + | chr4.4:14234100-14234119 | MS.gene09086:intron | 15.0% |
| !!! | TTTTTAGGAACAAAAAATAA+TGG | + | chr4.4:14234115-14234134 | MS.gene09086:intron | 15.0% |
| !! | AAAGTTAGTAACATTATTTG+AGG | - | chr4.4:14234096-14234115 | None:intergenic | 20.0% |
| !! | AAATTAAAATCATACCCATA+AGG | - | chr4.4:14232828-14232847 | None:intergenic | 20.0% |
| !! | ACTAATCTGTGAATTATAAA+AGG | - | chr4.4:14233908-14233927 | None:intergenic | 20.0% |
| !! | ATAATTTCTAATCAAGAACA+TGG | - | chr4.4:14234758-14234777 | None:intergenic | 20.0% |
| !! | CAAATGTCTCTTATAAATAT+AGG | - | chr4.4:14235110-14235129 | None:intergenic | 20.0% |
| !! | CTATATAAATAAAAGATGCT+TGG | - | chr4.4:14233579-14233598 | None:intergenic | 20.0% |
| !! | GAAAGATATACTATTATGTT+AGG | - | chr4.4:14233252-14233271 | None:intergenic | 20.0% |
| !! | GATTCAAAGATATTATTACA+AGG | + | chr4.4:14232733-14232752 | MS.gene09086:CDS | 20.0% |
| !! | TATAATAAGTTATCCAAGAA+AGG | - | chr4.4:14234624-14234643 | None:intergenic | 20.0% |
| !! | TGCAATTTAGTGTTAAAAAA+TGG | + | chr4.4:14232473-14232492 | MS.gene09086:intron | 20.0% |
| !!! | AAGAACATGGATTTTTTTAA+TGG | - | chr4.4:14231885-14231904 | None:intergenic | 20.0% |
| !!! | AATATGCTGAAAACATATTT+TGG | - | chr4.4:14234594-14234613 | None:intergenic | 20.0% |
| !!! | GAAAAATGTTTGTTACTTAA+AGG | + | chr4.4:14232382-14232401 | MS.gene09086:intron | 20.0% |
| !!! | TGATATAATTATTGATGATC+TGG | + | chr4.4:14232937-14232956 | MS.gene09086:intron | 20.0% |
| !!! | TTAACACTAAATTGCATTTT+TGG | - | chr4.4:14232469-14232488 | None:intergenic | 20.0% |
| !!! | TTTTACACTTGAAAATCTAT+TGG | - | chr4.4:14234444-14234463 | None:intergenic | 20.0% |
| ! | AAAAATGCTATAAACTCATG+AGG | + | chr4.4:14233126-14233145 | MS.gene09086:intron | 25.0% |
| ! | AAATCTAACACATATGCATA+TGG | + | chr4.4:14232879-14232898 | MS.gene09086:intron | 25.0% |
| ! | AACTTGGAGAAATATAATGA+AGG | - | chr4.4:14235063-14235082 | None:intergenic | 25.0% |
| ! | AATATGTGATCTTGACAAAA+GGG | + | chr4.4:14232094-14232113 | MS.gene09086:CDS | 25.0% |
| ! | AATTGATGTTGTTATATGGT+GGG | + | chr4.4:14232142-14232161 | MS.gene09086:CDS | 25.0% |
| ! | ACAATATCAAATTCAATCAC+TGG | + | chr4.4:14234038-14234057 | MS.gene09086:intron | 25.0% |
| ! | AGTTTATGCAAAAGTAAATG+AGG | - | chr4.4:14232613-14232632 | None:intergenic | 25.0% |
| ! | ATTGAAGAGTTAGATATCAA+TGG | + | chr4.4:14233510-14233529 | MS.gene09086:CDS | 25.0% |
| ! | CAAAACCCAAAATTAGTTAA+GGG | + | chr4.4:14232442-14232461 | MS.gene09086:intron | 25.0% |
| ! | CATGATAACAAAACAAACAA+TGG | - | chr4.4:14232586-14232605 | None:intergenic | 25.0% |
| ! | CTCTTATAAATAAGATCAGA+GGG | + | chr4.4:14235200-14235219 | MS.gene09086:intron | 25.0% |
| ! | GTAATAATATCTTTGAATCG+AGG | - | chr4.4:14232732-14232751 | None:intergenic | 25.0% |
| ! | GTGTCATATATGAAACAAAT+AGG | - | chr4.4:14233424-14233443 | None:intergenic | 25.0% |
| ! | TAACTCACATAAGATTGAAT+TGG | + | chr4.4:14234315-14234334 | MS.gene09086:intron | 25.0% |
| ! | TAGTAACATTATTTGAGGAA+TGG | - | chr4.4:14234091-14234110 | None:intergenic | 25.0% |
| ! | TATAAATAAAAGATGCTTGG+TGG | - | chr4.4:14233576-14233595 | None:intergenic | 25.0% |
| ! | TATTAAATTTGAACAGGTAC+TGG | + | chr4.4:14234775-14234794 | MS.gene09086:intron | 25.0% |
| ! | TCTCTTATAAATAAGATCAG+AGG | + | chr4.4:14235199-14235218 | MS.gene09086:intron | 25.0% |
| ! | TTAATTGAACATGCAATTTC+AGG | + | chr4.4:14233275-14233294 | MS.gene09086:intron | 25.0% |
| ! | TTCATTATATTTCTCCAAGT+TGG | + | chr4.4:14235062-14235081 | MS.gene09086:intron | 25.0% |
| !! | AATGTGTAACAATTTGCTTT+AGG | + | chr4.4:14232512-14232531 | MS.gene09086:intron | 25.0% |
| !! | ACTTATTTGAGTTTGTTTAG+TGG | + | chr4.4:14234507-14234526 | MS.gene09086:intron | 25.0% |
| !! | AGAATAATATCTTGTGGTTT+TGG | + | chr4.4:14232694-14232713 | MS.gene09086:CDS | 25.0% |
| !! | ATGTATATATGTCTACCTTT+TGG | - | chr4.4:14233373-14233392 | None:intergenic | 25.0% |
| !! | ATGTGTAACAATTTGCTTTA+GGG | + | chr4.4:14232513-14232532 | MS.gene09086:intron | 25.0% |
| !! | CAAACATTTTTCTTCAAAGA+CGG | - | chr4.4:14232374-14232393 | None:intergenic | 25.0% |
| !! | GGTTTACTTTATTTGATCAA+CGG | - | chr4.4:14233935-14233954 | None:intergenic | 25.0% |
| !! | GTTTACTTTATTTGATCAAC+GGG | - | chr4.4:14233934-14233953 | None:intergenic | 25.0% |
| !! | TGCTAAAAATTTGTTCTATC+TGG | + | chr4.4:14234480-14234499 | MS.gene09086:intron | 25.0% |
| !! | TGTATATATGTCTACCTTTT+GGG | - | chr4.4:14233372-14233391 | None:intergenic | 25.0% |
| !!! | AATTATTGATGATCTGGTTT+TGG | + | chr4.4:14232943-14232962 | MS.gene09086:intron | 25.0% |
| !!! | ATTTGCACTCAGTTTTATAT+AGG | + | chr4.4:14233661-14233680 | MS.gene09086:intron | 25.0% |
| !!! | GCTTAATGTAATTGTTTTAG+TGG | + | chr4.4:14232906-14232925 | MS.gene09086:intron | 25.0% |
| !!! | TTGTGATTGGTTTTAGAAAA+TGG | + | chr4.4:14234195-14234214 | MS.gene09086:CDS | 25.0% |
| !!! | TTGTTACTTAAAAAGTGCTT+TGG | + | chr4.4:14235235-14235254 | MS.gene09086:intron | 25.0% |
| AAACATTGTCTAAATGCAAC+AGG | + | chr4.4:14234724-14234743 | MS.gene09086:intron | 30.0% | |
| AAGAAATTCTATAGTTGTGC+TGG | + | chr4.4:14234935-14234954 | MS.gene09086:CDS | 30.0% | |
| AGCATGCAAATTATGCTATA+GGG | - | chr4.4:14233017-14233036 | None:intergenic | 30.0% | |
| AGTCATATAAGCTAACTGTT+TGG | + | chr4.4:14233221-14233240 | MS.gene09086:intron | 30.0% | |
| AGTTATGCTGTCATAGATAA+TGG | + | chr4.4:14233975-14233994 | MS.gene09086:intron | 30.0% | |
| ATATTATTCTGCACAATGCT+TGG | - | chr4.4:14232684-14232703 | None:intergenic | 30.0% | |
| ATCATATCAGTTGCTTCAAT+TGG | + | chr4.4:14234870-14234889 | MS.gene09086:CDS | 30.0% | |
| ATTGGAGAGGAAAATATAGT+GGG | + | chr4.4:14234246-14234265 | MS.gene09086:CDS | 30.0% | |
| CAATATGTGATCTTGACAAA+AGG | + | chr4.4:14232093-14232112 | MS.gene09086:CDS | 30.0% | |
| CATAAGATTGAATTGGAACA+TGG | + | chr4.4:14234322-14234341 | MS.gene09086:intron | 30.0% | |
| CATAGAAAATTTCTTCCGAA+CGG | - | chr4.4:14233720-14233739 | None:intergenic | 30.0% | |
| CTACTACTAGAATCTGTTAA+TGG | - | chr4.4:14231990-14232009 | None:intergenic | 30.0% | |
| GAAACAGAGATATTCCTTAT+GGG | + | chr4.4:14232811-14232830 | MS.gene09086:CDS | 30.0% | |
| GAATTGATGTTGTTATATGG+TGG | + | chr4.4:14232141-14232160 | MS.gene09086:CDS | 30.0% | |
| GCAAAACCCAAAATTAGTTA+AGG | + | chr4.4:14232441-14232460 | MS.gene09086:intron | 30.0% | |
| TAAAAGGAATTACCTCAACA+TGG | - | chr4.4:14233892-14233911 | None:intergenic | 30.0% | |
| TAGCATGCAAATTATGCTAT+AGG | - | chr4.4:14233018-14233037 | None:intergenic | 30.0% | |
| TCATACACATCAATTTATGC+CGG | - | chr4.4:14235135-14235154 | None:intergenic | 30.0% | |
| TCATATCAGTTGCTTCAATT+GGG | + | chr4.4:14234871-14234890 | MS.gene09086:CDS | 30.0% | |
| TCTTCAATTGAGAAATCAAG+TGG | - | chr4.4:14233498-14233517 | None:intergenic | 30.0% | |
| TGGGAATTGATGTTGTTATA+TGG | + | chr4.4:14232138-14232157 | MS.gene09086:CDS | 30.0% | |
| TGTTGCATTTAGACAATGTT+TGG | - | chr4.4:14234725-14234744 | None:intergenic | 30.0% | |
| TTGTGCAGAATAATATCTTG+TGG | + | chr4.4:14232688-14232707 | MS.gene09086:CDS | 30.0% | |
| TTTATAAGAGACATTTGAGC+CGG | + | chr4.4:14235113-14235132 | MS.gene09086:intron | 30.0% | |
| TTTATATCTTCTCCATGTTG+AGG | + | chr4.4:14233877-14233896 | MS.gene09086:CDS | 30.0% | |
| ! | AAATGGTTAAAGAAGTATGC+AGG | + | chr4.4:14234212-14234231 | MS.gene09086:CDS | 30.0% |
| ! | CTTTTGTCAAGATCACATAT+TGG | - | chr4.4:14232095-14232114 | None:intergenic | 30.0% |
| ! | TTGGTCCCTTAACTAATTTT+GGG | - | chr4.4:14232450-14232469 | None:intergenic | 30.0% |
| ! | TTTGGTCCCTTAACTAATTT+TGG | - | chr4.4:14232451-14232470 | None:intergenic | 30.0% |
| ! | TTTGTGTTTTATGTGCTAGT+GGG | - | chr4.4:14231860-14231879 | None:intergenic | 30.0% |
| !! | AATGATGGATCATCAATTTC+TGG | - | chr4.4:14232777-14232796 | None:intergenic | 30.0% |
| !! | ATCAATTTCTGGTATGAATG+GGG | - | chr4.4:14232766-14232785 | None:intergenic | 30.0% |
| !! | CATCAATTTCTGGTATGAAT+GGG | - | chr4.4:14232767-14232786 | None:intergenic | 30.0% |
| !! | GAACAAAAAATAATGGATGC+TGG | + | chr4.4:14234122-14234141 | MS.gene09086:CDS | 30.0% |
| !! | TATCATGGTTGGTGTTTTAA+TGG | + | chr4.4:14232269-14232288 | MS.gene09086:CDS | 30.0% |
| !! | TCATCAATTTCTGGTATGAA+TGG | - | chr4.4:14232768-14232787 | None:intergenic | 30.0% |
| !!! | ACTAATTTTGGGTTTTGCTT+TGG | - | chr4.4:14232439-14232458 | None:intergenic | 30.0% |
| AAGTTATCCAAGAAAGGTTG+TGG | - | chr4.4:14234618-14234637 | None:intergenic | 35.0% | |
| AATAATGCTGATAGAGAAGG+AGG | + | chr4.4:14233468-14233487 | MS.gene09086:CDS | 35.0% | |
| AATGGTTTCACTGCAAATCA+GGG | + | chr4.4:14233528-14233547 | MS.gene09086:CDS | 35.0% | |
| ACATCTGTTTCGTTTCACTT+TGG | - | chr4.4:14232410-14232429 | None:intergenic | 35.0% | |
| AGATCACATATTGGCATCAA+AGG | - | chr4.4:14232086-14232105 | None:intergenic | 35.0% | |
| CAAATCAGTCTACTATTACC+AGG | - | chr4.4:14233767-14233786 | None:intergenic | 35.0% | |
| CATATTTCCACAACCTTTCT+TGG | + | chr4.4:14234608-14234627 | MS.gene09086:intron | 35.0% | |
| CTAGAATCTGTTAATGGAGA+AGG | - | chr4.4:14231984-14232003 | None:intergenic | 35.0% | |
| CTGGTAATAGTAGACTGATT+TGG | + | chr4.4:14233765-14233784 | MS.gene09086:CDS | 35.0% | |
| GAGTATATACGTAACCAACT+TGG | - | chr4.4:14235079-14235098 | None:intergenic | 35.0% | |
| GATTGGAGAGGAAAATATAG+TGG | + | chr4.4:14234245-14234264 | MS.gene09086:CDS | 35.0% | |
| GGAAACAGAGATATTCCTTA+TGG | + | chr4.4:14232810-14232829 | MS.gene09086:CDS | 35.0% | |
| GTCTCTTATAAATATAGGGC+CGG | - | chr4.4:14235105-14235124 | None:intergenic | 35.0% | |
| GTGAAACGAAACAGATGTAA+AGG | + | chr4.4:14232412-14232431 | MS.gene09086:intron | 35.0% | |
| GTGAATAATGCTGATAGAGA+AGG | + | chr4.4:14233465-14233484 | MS.gene09086:intron | 35.0% | |
| GTTAATCCATAGTGTGCATA+TGG | - | chr4.4:14233343-14233362 | None:intergenic | 35.0% | |
| TAATGCAGAAATCATCCGTT+CGG | + | chr4.4:14233702-14233721 | MS.gene09086:intron | 35.0% | |
| TAGTAGTAGTAACCTTGAAG+TGG | + | chr4.4:14232001-14232020 | MS.gene09086:CDS | 35.0% | |
| TGAAGGAAGGATTGATCAAT+GGG | + | chr4.4:14232229-14232248 | MS.gene09086:CDS | 35.0% | |
| TGCATCTTCTGTTGAAACTA+AGG | + | chr4.4:14233614-14233633 | MS.gene09086:CDS | 35.0% | |
| TGGTCAAGAAAATTGGCATA+AGG | + | chr4.4:14234142-14234161 | MS.gene09086:CDS | 35.0% | |
| TTAGTGGCATAAACACTTGT+AGG | + | chr4.4:14234523-14234542 | MS.gene09086:intron | 35.0% | |
| TTGAATCGAGGATCAGTATT+TGG | - | chr4.4:14232720-14232739 | None:intergenic | 35.0% | |
| TTGGAGAGGAAAATATAGTG+GGG | + | chr4.4:14234247-14234266 | MS.gene09086:CDS | 35.0% | |
| TTTACACTGCAACACATCTA+TGG | - | chr4.4:14232554-14232573 | None:intergenic | 35.0% | |
| ! | ACATTTTTCTTCAAAGACGG+CGG | - | chr4.4:14232371-14232390 | None:intergenic | 35.0% |
| ! | ATGTTGTTATATGGTGGGAT+AGG | + | chr4.4:14232147-14232166 | MS.gene09086:CDS | 35.0% |
| ! | CCATCATTTGCTAGCTTAAT+GGG | + | chr4.4:14232789-14232808 | MS.gene09086:CDS | 35.0% |
| ! | GTTTGTGTTTTATGTGCTAG+TGG | - | chr4.4:14231861-14231880 | None:intergenic | 35.0% |
| ! | TCCATCATTTGCTAGCTTAA+TGG | + | chr4.4:14232788-14232807 | MS.gene09086:CDS | 35.0% |
| ! | TTTGGAACATTTGTCTGTTG+TGG | + | chr4.4:14235253-14235272 | MS.gene09086:intron | 35.0% |
| !! | TCAATTTCTGGTATGAATGG+GGG | - | chr4.4:14232765-14232784 | None:intergenic | 35.0% |
| !!! | TGAATTTTGAAGTGTTCCCA+CGG | - | chr4.4:14231941-14231960 | None:intergenic | 35.0% |
| AACCATCACACTTGCAGATT+TGG | + | chr4.4:14233951-14233970 | MS.gene09086:intron | 40.0% | |
| AACTCTTGCAATTCACCGTA+TGG | - | chr4.4:14234803-14234822 | None:intergenic | 40.0% | |
| AATTTGACTGGTACTCACAG+TGG | + | chr4.4:14232057-14232076 | MS.gene09086:CDS | 40.0% | |
| ACAGAAGATGCAAGTTCATC+TGG | - | chr4.4:14233606-14233625 | None:intergenic | 40.0% | |
| ACCATCACACTTGCAGATTT+GGG | + | chr4.4:14233952-14233971 | MS.gene09086:intron | 40.0% | |
| ACCCACAGTCCAAAATTTCT+CGG | - | chr4.4:14233797-14233816 | None:intergenic | 40.0% | |
| AGATTAGCACCTTTGTCTGA+AGG | + | chr4.4:14232212-14232231 | MS.gene09086:CDS | 40.0% | |
| AGGTTACAGTGTGTGTATCA+TGG | + | chr4.4:14232254-14232273 | MS.gene09086:CDS | 40.0% | |
| ATTGTTGCCGCAATAAAGCA+GGG | + | chr4.4:14234894-14234913 | MS.gene09086:CDS | 40.0% | |
| ATTTCTCCAAGAACCTTCAC+AGG | - | chr4.4:14235281-14235300 | None:intergenic | 40.0% | |
| ATTTGTATTCCTGTGAGTCC+TGG | + | chr4.4:14233746-14233765 | MS.gene09086:CDS | 40.0% | |
| CAACACTTCCATTAATCCGT+GGG | + | chr4.4:14231922-14231941 | MS.gene09086:CDS | 40.0% | |
| CAATGGTTTCACTGCAAATC+AGG | + | chr4.4:14233527-14233546 | MS.gene09086:CDS | 40.0% | |
| CAGGTTCAGAGAAATTTGAC+TGG | + | chr4.4:14232045-14232064 | MS.gene09086:CDS | 40.0% | |
| CATGTTCCATATGCACACTA+TGG | + | chr4.4:14233334-14233353 | MS.gene09086:CDS | 40.0% | |
| CCCATTAAGCTAGCAAATGA+TGG | - | chr4.4:14232792-14232811 | None:intergenic | 40.0% | |
| CTGAAGGAAGGATTGATCAA+TGG | + | chr4.4:14232228-14232247 | MS.gene09086:CDS | 40.0% | |
| CTTATAAATATAGGGCCGGA+GGG | - | chr4.4:14235101-14235120 | None:intergenic | 40.0% | |
| GAAGGAAGGATTGATCAATG+GGG | + | chr4.4:14232230-14232249 | MS.gene09086:CDS | 40.0% | |
| GATGAACCAGAAGTTGAAAC+AGG | + | chr4.4:14232026-14232045 | MS.gene09086:CDS | 40.0% | |
| GCATGCTATGCTACTATTCT+AGG | + | chr4.4:14233030-14233049 | MS.gene09086:intron | 40.0% | |
| GTGCATATGGAACATGTGAA+GGG | - | chr4.4:14233330-14233349 | None:intergenic | 40.0% | |
| TACAGTGTGTGTATCATGGT+TGG | + | chr4.4:14232258-14232277 | MS.gene09086:CDS | 40.0% | |
| TACTTTCATTCGCATTGTCG+CGG | + | chr4.4:14234961-14234980 | MS.gene09086:CDS | 40.0% | |
| TCAACACTTCCATTAATCCG+TGG | + | chr4.4:14231921-14231940 | MS.gene09086:CDS | 40.0% | |
| TCAATCCTTCCTTCAGACAA+AGG | - | chr4.4:14232224-14232243 | None:intergenic | 40.0% | |
| TCTGAACCTGTTTCAACTTC+TGG | - | chr4.4:14232035-14232054 | None:intergenic | 40.0% | |
| TCTTATAAATATAGGGCCGG+AGG | - | chr4.4:14235102-14235121 | None:intergenic | 40.0% | |
| TGATTGCAAGTTCATTCCTC+AGG | + | chr4.4:14232298-14232317 | MS.gene09086:CDS | 40.0% | |
| TGGATGCTGGTCAAGAAAAT+TGG | + | chr4.4:14234135-14234154 | MS.gene09086:CDS | 40.0% | |
| TGTGCATATGGAACATGTGA+AGG | - | chr4.4:14233331-14233350 | None:intergenic | 40.0% | |
| TGTTAATGGAGAAGGTGACA+AGG | - | chr4.4:14231976-14231995 | None:intergenic | 40.0% | |
| ! | AACATGCAATTTCAGGTACG+AGG | + | chr4.4:14233282-14233301 | MS.gene09086:intron | 40.0% |
| ! | AACCATTCCCTGCTTTATTG+CGG | - | chr4.4:14234904-14234923 | None:intergenic | 40.0% |
| ! | ATATGGTGGGATAGGAATGA+GGG | + | chr4.4:14232155-14232174 | MS.gene09086:CDS | 40.0% |
| ! | CACTTGTGAGTTGAAGAACA+TGG | - | chr4.4:14231898-14231917 | None:intergenic | 40.0% |
| ! | TATATGGTGGGATAGGAATG+AGG | + | chr4.4:14232154-14232173 | MS.gene09086:CDS | 40.0% |
| ! | TCCGAGAAATTTTGGACTGT+GGG | + | chr4.4:14233793-14233812 | MS.gene09086:CDS | 40.0% |
| ! | TGGTGCTTTCCGAGAAATTT+TGG | + | chr4.4:14233785-14233804 | MS.gene09086:CDS | 40.0% |
| ! | TGTAGGTTGTGAGACTGTTT+TGG | + | chr4.4:14234540-14234559 | MS.gene09086:intron | 40.0% |
| ! | TTCCGAGAAATTTTGGACTG+TGG | + | chr4.4:14233792-14233811 | MS.gene09086:CDS | 40.0% |
| !! | ATATGTCTACCTTTTGGGTC+TGG | - | chr4.4:14233367-14233386 | None:intergenic | 40.0% |
| !! | ATGCAGGTGATCAAGTTGAT+TGG | + | chr4.4:14234228-14234247 | MS.gene09086:CDS | 40.0% |
| !! | GACAAAGGTGCTAATCTATG+AGG | - | chr4.4:14232209-14232228 | None:intergenic | 40.0% |
| !! | GGCGGTTAAAAAGTATCAGA+AGG | - | chr4.4:14232353-14232372 | None:intergenic | 40.0% |
| !! | GGTACTGATTGAAAACCTCA+TGG | + | chr4.4:14233303-14233322 | MS.gene09086:CDS | 40.0% |
| !! | GTATCAGAAGGACTAGTTAC+CGG | - | chr4.4:14232341-14232360 | None:intergenic | 40.0% |
| !!! | AGCAGCTACACATGCTTTTT+TGG | - | chr4.4:14232658-14232677 | None:intergenic | 40.0% |
| !!! | GGTTGGTGTTTTAATGGATC+AGG | + | chr4.4:14232275-14232294 | MS.gene09086:CDS | 40.0% |
| AAGGCAGATGCTCTTGTGAT+TGG | + | chr4.4:14234182-14234201 | MS.gene09086:CDS | 45.0% | |
| ACCTCATGCTAAGAAGGTGA+TGG | + | chr4.4:14232118-14232137 | MS.gene09086:CDS | 45.0% | |
| ACCTCCTAGAGAACAGCTTA+TGG | + | chr4.4:14234283-14234302 | MS.gene09086:CDS | 45.0% | |
| AGAACAGCTTATGGACAGGT+AGG | + | chr4.4:14234292-14234311 | MS.gene09086:intron | 45.0% | |
| AGCCTATAAGAGCCTCAATG+TGG | + | chr4.4:14234830-14234849 | MS.gene09086:CDS | 45.0% | |
| CACCACATTGAGGCTCTTAT+AGG | - | chr4.4:14234835-14234854 | None:intergenic | 45.0% | |
| CCTCATGCTAAGAAGGTGAT+GGG | + | chr4.4:14232119-14232138 | MS.gene09086:CDS | 45.0% | |
| CTACTATTACCAGGACTCAC+AGG | - | chr4.4:14233758-14233777 | None:intergenic | 45.0% | |
| CTAGAGAACAGCTTATGGAC+AGG | + | chr4.4:14234288-14234307 | MS.gene09086:CDS | 45.0% | |
| CTATAAGAGCCTCAATGTGG+TGG | + | chr4.4:14234833-14234852 | MS.gene09086:CDS | 45.0% | |
| CTGGTTCATCATCCACTTCA+AGG | - | chr4.4:14232016-14232035 | None:intergenic | 45.0% | |
| CTGTCCATAAGCTGTTCTCT+AGG | - | chr4.4:14234290-14234309 | None:intergenic | 45.0% | |
| GAAGGATTGATCAATGGGGT+AGG | + | chr4.4:14232234-14232253 | MS.gene09086:CDS | 45.0% | |
| GATTGTTGCCGCAATAAAGC+AGG | + | chr4.4:14234893-14234912 | MS.gene09086:CDS | 45.0% | |
| GGATTAACTCCAGACCCAAA+AGG | + | chr4.4:14233355-14233374 | MS.gene09086:CDS | 45.0% | |
| GGTTACGTATATACTCCCTC+CGG | + | chr4.4:14235083-14235102 | MS.gene09086:intron | 45.0% | |
| GTTTCACTGCAAATCAGGGT+TGG | + | chr4.4:14233532-14233551 | MS.gene09086:CDS | 45.0% | |
| TAGCACCTTTGTCTGAAGGA+AGG | + | chr4.4:14232216-14232235 | MS.gene09086:CDS | 45.0% | |
| TCCATAAGCTGTTCTCTAGG+AGG | - | chr4.4:14234287-14234306 | None:intergenic | 45.0% | |
| TCCCAAATCTGCAAGTGTGA+TGG | - | chr4.4:14233956-14233975 | None:intergenic | 45.0% | |
| TCGACAAAATTGTACCGCGA+TGG | + | chr4.4:14233816-14233835 | MS.gene09086:CDS | 45.0% | |
| TGCCTTTGTTGGCACAAAAC+AGG | - | chr4.4:14234168-14234187 | None:intergenic | 45.0% | |
| ! | ATTTCATCGAAGAGCGTACG+TGG | - | chr4.4:14235034-14235053 | None:intergenic | 45.0% |
| ! | GAAGTGTTCCCACGGATTAA+TGG | - | chr4.4:14231933-14231952 | None:intergenic | 45.0% |
| !! | ACAAGAGCATCTGCCTTTGT+TGG | - | chr4.4:14234179-14234198 | None:intergenic | 45.0% |
| !! | GGTGATCAAGTTGATTGGAG+AGG | + | chr4.4:14234233-14234252 | MS.gene09086:CDS | 45.0% |
| CCCACATGAAGAATCCATCG+CGG | - | chr4.4:14233833-14233852 | None:intergenic | 50.0% | |
| CCCATCACCTTCTTAGCATG+AGG | - | chr4.4:14232122-14232141 | None:intergenic | 50.0% | |
| GAACATGTGAAGGGTCCATG+AGG | - | chr4.4:14233321-14233340 | None:intergenic | 50.0% | |
| GCATCACTTCCACCACATTG+AGG | - | chr4.4:14234845-14234864 | None:intergenic | 50.0% | |
| GCTAGTGGGATGTGAAGTGA+AGG | - | chr4.4:14231846-14231865 | None:intergenic | 50.0% | |
| GTCTGTTGTGGAACCTGTGA+AGG | + | chr4.4:14235265-14235284 | MS.gene09086:intron | 50.0% | |
| GTGGAACCTGTGAAGGTTCT+TGG | + | chr4.4:14235272-14235291 | MS.gene09086:intron | 50.0% | |
| TGCCGCAATAAAGCAGGGAA+TGG | + | chr4.4:14234899-14234918 | MS.gene09086:CDS | 50.0% | |
| ! | ACCGCGATGGATTCTTCATG+TGG | + | chr4.4:14233829-14233848 | MS.gene09086:CDS | 50.0% |
| ! | AGCTGTTCTCTAGGAGGTGT+AGG | - | chr4.4:14234281-14234300 | None:intergenic | 50.0% |
| ! | CCGCGATGGATTCTTCATGT+GGG | + | chr4.4:14233830-14233849 | MS.gene09086:CDS | 50.0% |
| ! | GGCCTGTTTTGTGCCAACAA+AGG | + | chr4.4:14234163-14234182 | MS.gene09086:CDS | 50.0% |
| ! | TGTTCTCTAGGAGGTGTAGG+AGG | - | chr4.4:14234278-14234297 | None:intergenic | 50.0% |
| !! | AAGGGCACCTCATGCTAAGA+AGG | + | chr4.4:14232112-14232131 | MS.gene09086:CDS | 50.0% |
| !! | GAACAGGTACTGGAGCCATA+CGG | + | chr4.4:14234785-14234804 | MS.gene09086:intron | 50.0% |
| !! | TCAGAAGGACTAGTTACCGG+AGG | - | chr4.4:14232338-14232357 | None:intergenic | 50.0% |
| ATTCCTCAGGCACCTCCTGA+AGG | + | chr4.4:14232311-14232330 | MS.gene09086:CDS | 55.0% | |
| CTAGTTACCGGAGGTCCTTC+AGG | - | chr4.4:14232329-14232348 | None:intergenic | 55.0% | |
| ! | GGGATAGGAATGAGGGTGCA+TGG | + | chr4.4:14232162-14232181 | MS.gene09086:CDS | 55.0% |
| GTTACCGGAGGTCCTTCAGG+AGG | - | chr4.4:14232326-14232345 | None:intergenic | 60.0% | |
| GGCACCTCCTGAAGGACCTC+CGG | + | chr4.4:14232319-14232338 | MS.gene09086:CDS | 65.0% | |
| !! | GGTCCTTCAGGAGGTGCCTG+AGG | - | chr4.4:14232317-14232336 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14231816 | 14235311 | 14231816 | ID=MS.gene09086 |
| chr4.4 | mRNA | 14231816 | 14235311 | 14231816 | ID=MS.gene09086.t1;Parent=MS.gene09086 |
| chr4.4 | exon | 14231816 | 14232340 | 14231816 | ID=MS.gene09086.t1.exon1;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14231816 | 14232340 | 14231816 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14232645 | 14232832 | 14232645 | ID=MS.gene09086.t1.exon2;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14232645 | 14232832 | 14232645 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14233297 | 14233376 | 14233297 | ID=MS.gene09086.t1.exon3;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14233297 | 14233376 | 14233297 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14233466 | 14233635 | 14233466 | ID=MS.gene09086.t1.exon4;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14233466 | 14233635 | 14233466 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14233710 | 14233898 | 14233710 | ID=MS.gene09086.t1.exon5;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14233710 | 14233898 | 14233710 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14234122 | 14234309 | 14234122 | ID=MS.gene09086.t1.exon6;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14234122 | 14234309 | 14234122 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14234791 | 14234982 | 14234791 | ID=MS.gene09086.t1.exon7;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14234791 | 14234982 | 14234791 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| chr4.4 | exon | 14235287 | 14235311 | 14235287 | ID=MS.gene09086.t1.exon8;Parent=MS.gene09086.t1 |
| chr4.4 | CDS | 14235287 | 14235311 | 14235287 | ID=cds.MS.gene09086.t1;Parent=MS.gene09086.t1 |
| Gene Sequence |
| Protein sequence |
