AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09800.t1 MTR_7g100590 97.877 471 10 0 1 471 1 471 0.0 963
MS.gene09800.t1 MTR_2g093060 53.811 433 142 14 1 408 1 400 2.46e-119 357
MS.gene09800.t1 MTR_2g093060 53.811 433 141 15 1 408 1 399 6.06e-118 354
MS.gene09800.t1 MTR_4g061200 54.273 433 135 13 1 408 1 395 2.32e-116 350
MS.gene09800.t1 MTR_4g061200 55.721 402 121 10 1 381 1 366 5.44e-114 341
MS.gene09800.t1 MTR_2g093060 50.808 433 140 15 1 408 1 385 1.13e-104 319
MS.gene09800.t1 MTR_4g061200 51.270 433 133 14 1 408 1 380 7.34e-102 312
MS.gene09800.t1 MTR_4g061200 52.488 402 119 11 1 381 1 351 3.37e-99 303
MS.gene09800.t1 MTR_5g016810 83.770 191 31 0 124 314 137 327 3.81e-97 302
MS.gene09800.t1 MTR_4g094868 83.420 193 30 1 124 314 161 353 3.08e-96 300
MS.gene09800.t1 MTR_4g094868 83.333 192 31 1 124 314 161 352 6.36e-95 296
MS.gene09800.t1 MTR_5g016810 80.711 197 32 1 124 314 137 333 3.41e-94 294
MS.gene09800.t1 MTR_7g061190 96.503 143 5 0 161 303 3 145 1.96e-85 259
MS.gene09800.t1 MTR_4g094868 80.380 158 30 1 158 314 39 196 1.13e-77 247
MS.gene09800.t1 MTR_1g049140 43.161 329 141 13 1 315 3 299 1.62e-54 187
MS.gene09800.t1 MTR_1g049140 42.553 329 143 12 1 315 3 299 6.67e-54 184
MS.gene09800.t1 MTR_4g127930 49.744 195 86 4 110 293 134 327 1.48e-51 182
MS.gene09800.t1 MTR_1g049140 50.195 257 94 13 1 242 3 240 4.78e-51 174
MS.gene09800.t1 MTR_4g130270 48.168 191 88 3 113 292 24 214 1.56e-50 176
MS.gene09800.t1 MTR_7g009410 48.515 202 87 4 136 323 65 263 1.77e-50 176
MS.gene09800.t1 MTR_7g080460 41.045 268 119 7 82 330 209 456 2.87e-49 179
MS.gene09800.t1 MTR_4g065370 52.071 169 70 3 136 293 163 331 4.25e-49 176
MS.gene09800.t1 MTR_4g065370 44.156 77 41 1 126 200 255 331 7.46e-12 67.8
MS.gene09800.t1 MTR_4g065370 42.857 91 43 2 215 296 150 240 9.80e-11 64.3
MS.gene09800.t1 MTR_2g098180 51.479 169 71 3 136 293 167 335 8.29e-49 175
MS.gene09800.t1 MTR_2g098180 44.156 77 41 1 126 200 259 335 1.37e-11 67.0
MS.gene09800.t1 MTR_5g015070 51.462 171 72 3 136 295 249 419 8.48e-49 176
MS.gene09800.t1 MTR_8g068510 49.490 196 84 5 112 295 106 298 2.30e-48 171
MS.gene09800.t1 MTR_8g068510 36.449 107 63 3 102 203 194 300 6.57e-11 64.3
MS.gene09800.t1 MTR_8g044070 44.545 220 105 5 113 323 31 242 3.48e-48 171
MS.gene09800.t1 MTR_3g103460 49.180 183 84 4 122 295 295 477 6.86e-47 172
MS.gene09800.t1 MTR_8g020510 51.807 166 72 3 136 293 248 413 9.17e-47 171
MS.gene09800.t1 MTR_6g011490 49.425 174 74 3 140 302 65 235 1.57e-46 165
MS.gene09800.t1 MTR_1g017400 50.595 168 75 3 136 295 312 479 3.83e-46 170
MS.gene09800.t1 MTR_4g097520 50.595 168 75 3 136 295 310 477 7.27e-46 169
MS.gene09800.t1 MTR_4g007770 48.598 214 88 6 130 321 30 243 1.17e-44 159
MS.gene09800.t1 MTR_8g044040 47.236 199 93 4 119 307 37 233 1.87e-44 160
MS.gene09800.t1 MTR_3g090510 80.952 105 20 0 167 271 163 267 7.54e-43 156
MS.gene09800.t1 MTR_8g468920 49.215 191 88 3 111 292 43 233 5.42e-41 151
MS.gene09800.t1 MTR_2g460730 46.465 198 96 4 116 303 25 222 3.12e-40 148
MS.gene09800.t1 MTR_5g031880 49.198 187 87 3 117 295 205 391 6.27e-40 150
MS.gene09800.t1 MTR_7g060560 79.048 105 21 1 167 271 156 259 8.03e-40 148
MS.gene09800.t1 MTR_7g091390 45.985 137 60 3 136 262 57 189 1.81e-21 96.7
MS.gene09800.t1 MTR_7g055620 93.182 44 3 0 213 256 6 49 4.98e-21 95.1
MS.gene09800.t1 MTR_1g037030 77.083 48 11 0 205 252 118 165 2.67e-18 84.0
MS.gene09800.t1 MTR_7g091390 47.573 103 47 2 163 262 3 101 6.39e-15 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09800.t1 AT2G28550 53.211 436 153 15 1 408 1 413 1.67e-108 330
MS.gene09800.t1 AT4G36920 66.406 256 76 3 117 369 110 358 1.62e-96 298
MS.gene09800.t1 AT4G36920 66.406 256 76 3 117 369 110 358 1.62e-96 298
MS.gene09800.t1 AT2G28550 50.229 436 151 16 1 408 1 398 4.27e-94 292
MS.gene09800.t1 AT5G67180 78.947 190 40 0 125 314 82 271 2.07e-90 277
MS.gene09800.t1 AT5G67180 78.947 190 40 0 125 314 82 271 3.39e-90 279
MS.gene09800.t1 AT5G67180 84.795 171 26 0 125 295 82 252 2.06e-88 271
MS.gene09800.t1 AT2G28550 57.827 313 99 8 1 289 1 304 4.10e-86 268
MS.gene09800.t1 AT2G28550 59.928 277 79 7 1 254 1 268 7.17e-76 239
MS.gene09800.t1 AT2G28550 59.928 277 79 7 1 254 1 268 7.17e-76 239
MS.gene09800.t1 AT5G67180 77.059 170 36 2 125 293 82 249 1.11e-73 233
MS.gene09800.t1 AT5G60120 38.370 503 218 18 1 455 1 459 1.61e-70 232
MS.gene09800.t1 AT5G60120 38.632 497 218 18 1 455 1 452 3.22e-70 231
MS.gene09800.t1 AT5G60120 44.110 365 138 12 1 330 1 334 6.11e-67 220
MS.gene09800.t1 AT5G60120 44.110 365 138 12 1 330 1 334 6.11e-67 220
MS.gene09800.t1 AT5G60120 44.110 365 138 12 1 330 1 334 6.11e-67 220
MS.gene09800.t1 AT5G60120 37.333 525 215 20 1 455 1 481 9.19e-67 223
MS.gene09800.t1 AT2G28550 52.713 258 88 9 156 408 4 232 8.17e-64 208
MS.gene09800.t1 AT1G72570 48.958 192 85 4 115 293 197 388 2.12e-51 179
MS.gene09800.t1 AT4G37750 43.460 237 107 4 114 323 258 494 4.89e-51 182
MS.gene09800.t1 AT5G57390 48.469 196 89 4 109 293 56 250 1.21e-50 178
MS.gene09800.t1 AT1G51190 44.206 233 103 6 72 293 139 355 2.08e-50 180
MS.gene09800.t1 AT5G57390 48.469 196 89 4 109 293 174 368 4.75e-50 179
MS.gene09800.t1 AT5G17430 48.438 192 87 4 112 292 122 312 1.19e-49 177
MS.gene09800.t1 AT5G17430 48.438 192 87 4 112 292 184 374 2.05e-49 178
MS.gene09800.t1 AT2G39250 39.701 335 123 11 1 326 1 265 3.08e-49 171
MS.gene09800.t1 AT3G20840 50.888 169 72 3 136 293 178 346 7.28e-49 176
MS.gene09800.t1 AT3G20840 44.156 77 41 1 126 200 270 346 8.73e-12 67.8
MS.gene09800.t1 AT2G39250 46.473 241 82 6 1 233 1 202 3.62e-48 166
MS.gene09800.t1 AT3G54320 46.829 205 84 4 120 299 32 236 2.21e-44 161
MS.gene09800.t1 AT5G65510 54.386 171 67 3 136 295 170 340 2.61e-44 161
MS.gene09800.t1 AT3G54320 46.602 206 85 4 120 300 32 237 2.81e-44 161
MS.gene09800.t1 AT5G65510 54.386 171 67 3 136 295 228 398 3.76e-44 162
MS.gene09800.t1 AT5G65510 54.386 171 67 3 136 295 228 398 3.76e-44 162
MS.gene09800.t1 AT3G54990 66.443 149 39 2 97 245 91 228 8.01e-44 154
MS.gene09800.t1 AT3G54990 59.016 183 50 3 97 279 91 248 1.28e-43 157
MS.gene09800.t1 AT5G10510 52.047 171 71 3 136 295 227 397 3.20e-42 157
MS.gene09800.t1 AT5G10510 52.047 171 71 3 136 295 227 397 3.20e-42 157
MS.gene09800.t1 AT5G10510 52.047 171 71 3 136 295 265 435 3.92e-42 158
MS.gene09800.t1 AT5G10510 52.047 171 71 3 136 295 265 435 3.92e-42 158
MS.gene09800.t1 AT5G10510 52.047 171 71 3 136 295 250 420 4.27e-42 157
MS.gene09800.t1 AT5G65510 53.191 141 55 3 136 265 170 310 2.48e-40 147
MS.gene09800.t1 AT1G79700 53.448 174 70 2 130 292 43 216 4.27e-40 147
MS.gene09800.t1 AT1G16060 50.000 188 83 2 116 292 35 222 3.47e-39 145
MS.gene09800.t1 AT5G10510 50.000 168 76 3 136 295 227 394 4.25e-38 146
MS.gene09800.t1 AT5G10510 45.026 191 74 4 136 295 265 455 1.86e-35 139
MS.gene09800.t1 AT1G79700 50.575 174 65 3 130 292 43 206 8.32e-33 127
MS.gene09800.t1 AT3G54320 50.725 138 67 1 163 299 33 170 1.47e-31 124
MS.gene09800.t1 AT3G54320 50.725 138 67 1 163 299 33 170 1.47e-31 124
MS.gene09800.t1 AT1G79700 54.412 136 61 1 158 292 5 140 1.12e-28 113
MS.gene09800.t1 AT1G16060 54.412 136 61 1 158 292 17 152 6.80e-28 112
MS.gene09800.t1 AT1G79700 54.264 129 58 1 165 292 6 134 1.44e-26 107
MS.gene09800.t1 AT2G41710 48.855 131 53 2 136 256 67 193 5.06e-25 107
MS.gene09800.t1 AT2G41710 48.855 131 53 2 136 256 67 193 6.92e-25 107
MS.gene09800.t1 AT2G41710 47.059 136 53 3 136 256 67 198 7.34e-23 100
MS.gene09800.t1 AT2G41710 46.281 121 51 2 146 256 112 228 3.48e-20 93.2
MS.gene09800.t1 AT3G54320 54.167 96 43 1 206 300 1 96 3.43e-19 88.2
MS.gene09800.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene09800.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene09800.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene09800.t1 AT1G16060 55.682 88 38 1 206 292 1 88 8.42e-18 82.4
MS.gene09800.t1 AT3G25730 38.947 95 54 2 128 222 53 143 2.55e-12 68.2
MS.gene09800.t1 AT1G68840 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
MS.gene09800.t1 AT1G68840 37.383 107 63 2 116 222 44 146 1.29e-11 66.2
MS.gene09800.t1 AT2G47520 44.578 83 43 2 122 202 32 113 1.56e-11 63.2

Find 134 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGCTGCCATGCCCAATT+TGG 0.214682 7.3:+12270414 None:intergenic
ATCATTCCCGATTCGTTTGC+TGG 0.249662 7.3:+12272611 None:intergenic
CTCAATGTTCAGTCATCTTA+TGG 0.249805 7.3:-12270671 MS.gene09800:CDS
GTTTGCAAGTTCAGCGTAAC+TGG 0.251291 7.3:-12270874 MS.gene09800:CDS
AATCTGCTCCCGTTCCAAAT+TGG 0.265423 7.3:-12270428 MS.gene09800:CDS
CTCCAAAGTCCATATAATAA+TGG 0.282974 7.3:-12270396 MS.gene09800:CDS
GACGTTGGGAATCGCATATT+TGG 0.285512 7.3:-12272418 MS.gene09800:intron
AAAGTTGACCCATTATTATA+TGG 0.312812 7.3:+12270387 None:intergenic
GCTCGTATGGGACAGTTTCT+TGG 0.324940 7.3:-12271618 MS.gene09800:CDS
GGAAGCGTTGTTGTTGAGTA+TGG 0.328168 7.3:+12272712 None:intergenic
ATCTGCTCCCGTTCCAAATT+GGG 0.340346 7.3:-12270427 MS.gene09800:CDS
CGTTGATAGTTTGAGGACTC+TGG 0.357542 7.3:-12270704 MS.gene09800:intron
ACCCATTATTATATGGACTT+TGG 0.377342 7.3:+12270394 None:intergenic
TTATGTAGGTATATATATCT+TGG 0.380122 7.3:-12271456 MS.gene09800:intron
TTCTCTGCTGCAGCATCATC+AGG 0.380972 7.3:-12270351 MS.gene09800:CDS
CTGAGCATCAACCTCCAATC+TGG 0.386362 7.3:-12270634 MS.gene09800:CDS
ACCATTACACTCTTATCAAC+AGG 0.390876 7.3:+12270842 None:intergenic
GTTACTTTCTACCGGAGAAC+TGG 0.391369 7.3:-12272440 MS.gene09800:CDS
TCCAAAGTCCATATAATAAT+GGG 0.393361 7.3:-12270395 MS.gene09800:CDS
TTCTTCACCGGCTGAGGTCG+TGG 0.400221 7.3:+12272506 None:intergenic
GATGCTGCAGCAGAGAAATT+AGG 0.402479 7.3:+12270357 None:intergenic
TAATTACTTTCCCGTGTGTA+AGG 0.413461 7.3:-12270603 MS.gene09800:intron
CTCGTATGGGACAGTTTCTT+GGG 0.413776 7.3:-12271617 MS.gene09800:CDS
TATGTAGGTATATATATCTT+GGG 0.414146 7.3:-12271455 MS.gene09800:intron
TGCCATGCCCAATTTGGAAC+GGG 0.426003 7.3:+12270420 None:intergenic
GGGTGGAGGTATGTTATGTT+TGG 0.445569 7.3:+12270288 None:intergenic
ATTTGAACATCAGAGTTAGA+AGG 0.449742 7.3:+12270923 None:intergenic
GCCGGTGAAGAAGAGTCGTC+GGG 0.459593 7.3:-12272495 MS.gene09800:CDS
TGGACGATGGGAAGCTCGTA+TGG 0.459668 7.3:-12271631 MS.gene09800:CDS
CCTGCAGTAGAAAGAGGGTA+TGG 0.464065 7.3:+12270233 None:intergenic
TACAACAGCTTCGCCGGCGC+CGG 0.464183 7.3:+12272652 None:intergenic
GCAGAATCTTGATCTGAACT+TGG 0.465184 7.3:-12270957 MS.gene09800:CDS
CTATCCGCAGCTGTTGTTGA+AGG 0.465186 7.3:+12270324 None:intergenic
AAGAGCAATAGAGAATAGGA+TGG 0.477231 7.3:-12270451 MS.gene09800:CDS
ACTCTCCTCCGTCGTTCAGA+TGG 0.481608 7.3:-12272828 MS.gene09800:CDS
CTACCGGAGAACTGGACGTT+GGG 0.483697 7.3:-12272432 MS.gene09800:CDS
AGGAAAGAGCAATAGAGAAT+AGG 0.487980 7.3:-12270455 MS.gene09800:CDS
CCATACCCTCTTTCTACTGC+AGG 0.495357 7.3:-12270233 MS.gene09800:CDS
TTTGAGGCTAGTTCTTATGA+AGG 0.495376 7.3:-12271216 MS.gene09800:CDS
ACTGAAGATTCATGCTCTTA+CGG 0.496241 7.3:-12272758 MS.gene09800:CDS
TAGTACCATCGTTATCAGCC+TGG 0.496630 7.3:+12271181 None:intergenic
TGCTCTTACGGCGATGCATA+CGG 0.502837 7.3:-12272746 MS.gene09800:CDS
TGTCCGTACAACAGCTTCGC+CGG 0.508835 7.3:+12272646 None:intergenic
GTAGAAAGAGGGTATGGGGC+TGG 0.510625 7.3:+12270239 None:intergenic
ATCGTGGTGTTACTTTCTAC+CGG 0.518398 7.3:-12272448 MS.gene09800:CDS
TAATTAGTACCACTCCAGAT+TGG 0.520137 7.3:+12270620 None:intergenic
TGTTGCTCCACGACCTCAGC+CGG 0.520275 7.3:-12272513 MS.gene09800:CDS
CGACTCTTCTTCACCGGCTG+AGG 0.520783 7.3:+12272500 None:intergenic
AACATGCACCACAGTGGAAG+TGG 0.520906 7.3:-12270896 MS.gene09800:CDS
ATTCCCAACGTCCAGTTCTC+CGG 0.521427 7.3:+12272429 None:intergenic
ATGGGGCTGGAGTTAGTCGC+TGG 0.523340 7.3:+12270252 None:intergenic
TGAAGGAGAGTTAACTTCCC+AGG 0.523464 7.3:-12271199 MS.gene09800:CDS
GTCGCTGGAGTAGGAAAATG+AGG 0.525924 7.3:+12270267 None:intergenic
GAGCTTCAACACTCCGGCGC+CGG 0.528911 7.3:-12272665 MS.gene09800:CDS
CGGTACGCCACCGTGATGAT+CGG 0.529586 7.3:+12272550 None:intergenic
AGGTTGATGCTCAGATGCTA+TGG 0.530023 7.3:+12270643 None:intergenic
TGTGGAAAACAAGTATACTT+AGG 0.532079 7.3:-12272280 MS.gene09800:intron
CTGCTATAAAATGCAATGGA+AGG 0.535486 7.3:-12271254 MS.gene09800:CDS
CTGCAGTAGAAAGAGGGTAT+GGG 0.539113 7.3:+12270234 None:intergenic
CGATCATCACGGTGGCGTAC+CGG 0.539554 7.3:-12272549 MS.gene09800:CDS
CCCCGACGACTCTTCTTCAC+CGG 0.545486 7.3:+12272494 None:intergenic
CTGGAGTTAGTCGCTGGAGT+AGG 0.547085 7.3:+12270258 None:intergenic
GCCGGAGTGTTGAAGCTCAC+CGG 0.549298 7.3:+12272670 None:intergenic
GTTGATAGTTTGAGGACTCT+GGG 0.550553 7.3:-12270703 MS.gene09800:intron
GACAGAGTACTGGTTTCTCA+AGG 0.553049 7.3:-12271692 MS.gene09800:CDS
TCAGCTCCTGCAGTAGAAAG+AGG 0.553716 7.3:+12270227 None:intergenic
TGATTACAGAGCGTATGATA+AGG 0.555672 7.3:-12271277 MS.gene09800:intron
CTCCCGTTCCAAATTGGGCA+TGG 0.556092 7.3:-12270422 MS.gene09800:CDS
TTATGATGAAGATATAAAGC+AGG 0.557521 7.3:-12271945 MS.gene09800:intron
GCGCCGGCGAAGCTGTTGTA+CGG 0.557964 7.3:-12272649 MS.gene09800:CDS
TACTGCGAGCTTCGTGACCT+CGG 0.565421 7.3:+12272470 None:intergenic
ATCTGAACGACGGAGGAGAG+TGG 0.568541 7.3:+12272830 None:intergenic
ATTCTGCGTAGACAGAGTAC+TGG 0.571541 7.3:-12271702 MS.gene09800:CDS
GAGTAGGAAAATGAGGGTGG+AGG 0.571882 7.3:+12270274 None:intergenic
AGCCGGTGAAGAAGAGTCGT+CGG 0.574425 7.3:-12272496 MS.gene09800:CDS
GTTCAGATGGAAGATTCATC+CGG 0.575771 7.3:-12272815 MS.gene09800:CDS
CGAGCTGCGATAAAGTTTCG+TGG 0.575785 7.3:-12272001 MS.gene09800:CDS
TGCAGTAGAAAGAGGGTATG+GGG 0.576798 7.3:+12270235 None:intergenic
TATCCGCAGCTGTTGTTGAA+GGG 0.577107 7.3:+12270325 None:intergenic
TGCTATAAAATGCAATGGAA+GGG 0.577688 7.3:-12271253 MS.gene09800:CDS
CGCCTTCTGAGAGTAGAGGA+TGG 0.578820 7.3:-12272586 MS.gene09800:CDS
GTCGACAACGGTACTATCTC+CGG 0.580552 7.3:-12272689 MS.gene09800:CDS
TTACCTTGCCGCAGCATGCG+CGG 0.580853 7.3:+12272132 None:intergenic
TCTACCGGAGAACTGGACGT+TGG 0.583316 7.3:-12272433 MS.gene09800:CDS
ATACCGCGCATGCTGCGGCA+AGG 0.583419 7.3:-12272135 MS.gene09800:intron
GCAACAACAACAGTCTGCTC+CGG 0.583622 7.3:+12272530 None:intergenic
CAGAATCTTGATCTGAACTT+GGG 0.584312 7.3:-12270956 MS.gene09800:CDS
AAGGCTGCTATAAAATGCAA+TGG 0.584344 7.3:-12271258 MS.gene09800:CDS
TTAGTACCACTCCAGATTGG+AGG 0.585536 7.3:+12270623 None:intergenic
GACGGAGGAATCAAAGCTAC+CGG 0.588222 7.3:+12272796 None:intergenic
TTTGCAAGTTCAGCGTAACT+GGG 0.588454 7.3:-12270873 MS.gene09800:CDS
TCTGCATAAATGTGGACGAT+GGG 0.589018 7.3:-12271643 MS.gene09800:CDS
AGTACCATCGTTATCAGCCT+GGG 0.589962 7.3:+12271182 None:intergenic
AGAAGAGTCGTCGGGGACCG+AGG 0.591121 7.3:-12272487 MS.gene09800:CDS
ATCCATCCTCTACTCTCAGA+AGG 0.594152 7.3:+12272584 None:intergenic
CTGCCATGCCCAATTTGGAA+CGG 0.595613 7.3:+12270419 None:intergenic
GACGGAGGAGAGTGGAAGAG+AGG 0.597615 7.3:+12272838 None:intergenic
ATAGCGAGCTAGATGCTGCA+AGG 0.598807 7.3:-12271425 MS.gene09800:intron
ACAGAGTACTGGTTTCTCAA+GGG 0.599902 7.3:-12271691 MS.gene09800:CDS
ATTTGATACCGCGCATGCTG+CGG 0.600999 7.3:-12272140 MS.gene09800:CDS
CAGAGTACTGGTTTCTCAAG+GGG 0.605158 7.3:-12271690 MS.gene09800:CDS
AAAGTTTCGTGGCGTCGATG+CGG 0.606313 7.3:-12271990 MS.gene09800:CDS
GGACGATGGGAAGCTCGTAT+GGG 0.611195 7.3:-12271630 MS.gene09800:CDS
CAGCTCCTGCAGTAGAAAGA+GGG 0.613397 7.3:+12270228 None:intergenic
ATTAGTATTCACCTTACACA+CGG 0.613966 7.3:+12270592 None:intergenic
TGAACATCAGAGTTAGAAGG+AGG 0.614498 7.3:+12270926 None:intergenic
GCCTGTTGATAAGAGTGTAA+TGG 0.619307 7.3:-12270843 MS.gene09800:intron
AATTTCTCGTCCGATCATCA+CGG 0.619679 7.3:-12272560 MS.gene09800:CDS
AACAACGCTTCCGTCGACAA+CGG 0.620133 7.3:-12272701 MS.gene09800:CDS
GGAGTTACTCTGCATAAATG+TGG 0.624873 7.3:-12271651 MS.gene09800:CDS
CTCTGCATAAATGTGGACGA+TGG 0.629073 7.3:-12271644 MS.gene09800:CDS
ATCTCGCCTTCTGAGAGTAG+AGG 0.632485 7.3:-12272590 MS.gene09800:CDS
TCCGGTGAGCTTCAACACTC+CGG 0.632556 7.3:-12272671 MS.gene09800:CDS
GTAGATGAATAACTTTACAA+AGG 0.633971 7.3:-12271739 MS.gene09800:intron
TCACGAAGCTCGCAGTATCG+TGG 0.635514 7.3:-12272464 MS.gene09800:CDS
AGAGCATGAATCTTCAGTGT+CGG 0.641138 7.3:+12272763 None:intergenic
GGTTGATGCTCAGATGCTAT+GGG 0.641889 7.3:+12270644 None:intergenic
GTCGGCAGCGTTGACGACGG+AGG 0.642992 7.3:+12272781 None:intergenic
GCTGCAGCAGAGAAATTAGG+TGG 0.656992 7.3:+12270360 None:intergenic
CTGGAGTAGGAAAATGAGGG+TGG 0.661562 7.3:+12270271 None:intergenic
CATCAACCTCCAATCTGGAG+TGG 0.662314 7.3:-12270629 MS.gene09800:CDS
GGAGATAGTACCGTTGTCGA+CGG 0.663908 7.3:+12272691 None:intergenic
ATCTTCCATCTGAACGACGG+AGG 0.664445 7.3:+12272823 None:intergenic
AGTGTCGGCAGCGTTGACGA+CGG 0.674336 7.3:+12272778 None:intergenic
TTAGTATTCACCTTACACAC+GGG 0.680796 7.3:+12270593 None:intergenic
AGGGGAAGTTCTAAATACAG+AGG 0.681558 7.3:-12271672 MS.gene09800:CDS
ATTCCCTTCAACAACAGCTG+CGG 0.681754 7.3:-12270328 MS.gene09800:CDS
TGAATCTTCCATCTGAACGA+CGG 0.693422 7.3:+12272820 None:intergenic
TCGCTGGAGTAGGAAAATGA+GGG 0.701704 7.3:+12270268 None:intergenic
CCGGTGAAGAAGAGTCGTCG+GGG 0.715698 7.3:-12272494 MS.gene09800:CDS
TTCTCGTCCGATCATCACGG+TGG 0.718908 7.3:-12272557 MS.gene09800:CDS
ACTTCCCAGGCTGATAACGA+TGG 0.728400 7.3:-12271186 MS.gene09800:intron
ATGATGAACATGCACCACAG+TGG 0.729813 7.3:-12270902 MS.gene09800:CDS
CTTGCAAACCACTTCCACTG+TGG 0.732557 7.3:+12270888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATCAAATTAAACTAA+AGG + chr7.3:12271517-12271536 None:intergenic 10.0%
!!! TATTTAGTTCTTAATTATAT+TGG - chr7.3:12271585-12271604 MS.gene09800:intron 10.0%
!! AAAGATCAAAATCTAAAAAA+AGG + chr7.3:12270912-12270931 None:intergenic 15.0%
!! ATGATCCAAAATATTTAATT+AGG + chr7.3:12271739-12271758 None:intergenic 15.0%
!! TATAATTAAGAACTAAATAC+TGG + chr7.3:12271584-12271603 None:intergenic 15.0%
!! TGATTATAAAACCAAAAAAA+AGG + chr7.3:12271959-12271978 None:intergenic 15.0%
!!! AAATGCCTAATTAAATATTT+TGG - chr7.3:12271731-12271750 MS.gene09800:CDS 15.0%
!!! TAAATATTGAATGTTTTTCA+TGG - chr7.3:12271024-12271043 MS.gene09800:intron 15.0%
!!! TCTTTGAAATTTAATTTTTC+AGG - chr7.3:12270927-12270946 MS.gene09800:CDS 15.0%
!! ATTATTTGTGTTCTATTTAC+AGG - chr7.3:12272618-12272637 MS.gene09800:CDS 20.0%
!! ATTTATCAATCATATATAGC+AGG - chr7.3:12271696-12271715 MS.gene09800:CDS 20.0%
!! TATGTAGGTATATATATCTT+GGG - chr7.3:12271638-12271657 MS.gene09800:CDS 20.0%
!! TTATGTAGGTATATATATCT+TGG - chr7.3:12271637-12271656 MS.gene09800:CDS 20.0%
!!! TTGAAATTTAATTTTTCAGG+TGG - chr7.3:12270930-12270949 MS.gene09800:CDS 20.0%
! AAAGTTGACCCATTATTATA+TGG + chr7.3:12272709-12272728 None:intergenic 25.0%
! AGGTTAATTGACATACTTTA+AGG + chr7.3:12272043-12272062 None:intergenic 25.0%
! AGTTCTTAATTATATTGGTC+TGG - chr7.3:12271590-12271609 MS.gene09800:intron 25.0%
! GTAGATGAATAACTTTACAA+AGG - chr7.3:12271354-12271373 MS.gene09800:intron 25.0%
! TCCAAAGTCCATATAATAAT+GGG - chr7.3:12272698-12272717 MS.gene09800:CDS 25.0%
! TTAACCTTTACTATTAAGAC+TGG - chr7.3:12272056-12272075 MS.gene09800:intron 25.0%
! TTATGATGAAGATATAAAGC+AGG - chr7.3:12271148-12271167 MS.gene09800:intron 25.0%
!! GTTCTTAATTATATTGGTCT+GGG - chr7.3:12271591-12271610 MS.gene09800:intron 25.0%
!! GTTGTTAATTATATTGGTCT+GGG - chr7.3:12271613-12271632 MS.gene09800:CDS 25.0%
!!! AAGAACTAAATACTGGTTTA+TGG + chr7.3:12271577-12271596 None:intergenic 25.0%
!!! AATCACAAATCAGTCATTTT+AGG + chr7.3:12271547-12271566 None:intergenic 25.0%
ACCCATTATTATATGGACTT+TGG + chr7.3:12272702-12272721 None:intergenic 30.0%
AGAGTGAGTGATAGTTTATA+TGG + chr7.3:12272006-12272025 None:intergenic 30.0%
ATATCTTAAGAATCTTCTGC+TGG - chr7.3:12272583-12272602 MS.gene09800:CDS 30.0%
ATCACCAGTCTTAATAGTAA+AGG + chr7.3:12272063-12272082 None:intergenic 30.0%
ATTAGTATTCACCTTACACA+CGG + chr7.3:12272504-12272523 None:intergenic 30.0%
ATTTGAACATCAGAGTTAGA+AGG + chr7.3:12272173-12272192 None:intergenic 30.0%
CTCCAAAGTCCATATAATAA+TGG - chr7.3:12272697-12272716 MS.gene09800:CDS 30.0%
GGTTGTTAATTATATTGGTC+TGG - chr7.3:12271612-12271631 MS.gene09800:CDS 30.0%
GTCTGGGTTGTTAATTATAT+TGG - chr7.3:12271607-12271626 MS.gene09800:intron 30.0%
TGCTATAAAATGCAATGGAA+GGG - chr7.3:12271840-12271859 MS.gene09800:intron 30.0%
TGTGGAAAACAAGTATACTT+AGG - chr7.3:12270813-12270832 MS.gene09800:intron 30.0%
! TACATGTTGTGTTATTGACT+TGG - chr7.3:12271781-12271800 MS.gene09800:intron 30.0%
! TTGATAAGAGTGTAATGGTA+AGG - chr7.3:12272255-12272274 MS.gene09800:intron 30.0%
!! TCTGTTTTCGTTTTTCTGTA+GGG - chr7.3:12270788-12270807 MS.gene09800:intron 30.0%
AAAAAAAAGGTGAGCCTCAA+TGG + chr7.3:12271946-12271965 None:intergenic 35.0%
AAGAGCAATAGAGAATAGGA+TGG - chr7.3:12272642-12272661 MS.gene09800:CDS 35.0%
AAGGCTGCTATAAAATGCAA+TGG - chr7.3:12271835-12271854 MS.gene09800:intron 35.0%
AATTCATGTGAAAGAGCAGA+GGG + chr7.3:12272327-12272346 None:intergenic 35.0%
ACAGAAAAACGAAAACAGAG+TGG + chr7.3:12270787-12270806 None:intergenic 35.0%
ACCATTACACTCTTATCAAC+AGG + chr7.3:12272254-12272273 None:intergenic 35.0%
ACTGAAGATTCATGCTCTTA+CGG - chr7.3:12270335-12270354 MS.gene09800:CDS 35.0%
AGGAAAGAGCAATAGAGAAT+AGG - chr7.3:12272638-12272657 MS.gene09800:CDS 35.0%
ATTTGGTTAGCATTTCGCAA+TGG - chr7.3:12270692-12270711 MS.gene09800:CDS 35.0%
CAGAATCTTGATCTGAACTT+GGG - chr7.3:12272137-12272156 MS.gene09800:CDS 35.0%
CTCAATGTTCAGTCATCTTA+TGG - chr7.3:12272422-12272441 MS.gene09800:CDS 35.0%
CTGCTATAAAATGCAATGGA+AGG - chr7.3:12271839-12271858 MS.gene09800:intron 35.0%
GTACTACTTATTGACCATTG+AGG - chr7.3:12271929-12271948 MS.gene09800:intron 35.0%
TAATTACTTTCCCGTGTGTA+AGG - chr7.3:12272490-12272509 MS.gene09800:CDS 35.0%
TAATTAGTACCACTCCAGAT+TGG + chr7.3:12272476-12272495 None:intergenic 35.0%
TGATTACAGAGCGTATGATA+AGG - chr7.3:12271816-12271835 MS.gene09800:intron 35.0%
TTAGTATTCACCTTACACAC+GGG + chr7.3:12272503-12272522 None:intergenic 35.0%
! ATATTGGTCTGGGTTTATGT+AGG - chr7.3:12271623-12271642 MS.gene09800:CDS 35.0%
! GGAAGCAGTTACAAATTTTG+AGG - chr7.3:12271861-12271880 MS.gene09800:intron 35.0%
! TTTGAGGCTAGTTCTTATGA+AGG - chr7.3:12271877-12271896 MS.gene09800:intron 35.0%
!! CTCTGTTTTCGTTTTTCTGT+AGG - chr7.3:12270787-12270806 MS.gene09800:intron 35.0%
!! TAATCTGCGTTGATAGTTTG+AGG - chr7.3:12272382-12272401 MS.gene09800:intron 35.0%
!!! ATTGAGGCTCACCTTTTTTT+TGG - chr7.3:12271945-12271964 MS.gene09800:intron 35.0%
AATTTCTCGTCCGATCATCA+CGG - chr7.3:12270533-12270552 MS.gene09800:intron 40.0%
AGAGCATGAATCTTCAGTGT+CGG + chr7.3:12270333-12270352 None:intergenic 40.0%
ATTCATGTGAAAGAGCAGAG+GGG + chr7.3:12272326-12272345 None:intergenic 40.0%
GAATTCATGTGAAAGAGCAG+AGG + chr7.3:12272328-12272347 None:intergenic 40.0%
GCAGAATCTTGATCTGAACT+TGG - chr7.3:12272136-12272155 MS.gene09800:CDS 40.0%
GGAGTTACTCTGCATAAATG+TGG - chr7.3:12271442-12271461 MS.gene09800:CDS 40.0%
GTTCAGATGGAAGATTCATC+CGG - chr7.3:12270278-12270297 MS.gene09800:CDS 40.0%
TCTGCATAAATGTGGACGAT+GGG - chr7.3:12271450-12271469 MS.gene09800:CDS 40.0%
TGAACATCAGAGTTAGAAGG+AGG + chr7.3:12272170-12272189 None:intergenic 40.0%
TGAATCTTCCATCTGAACGA+CGG + chr7.3:12270276-12270295 None:intergenic 40.0%
TTTGCAAGTTCAGCGTAACT+GGG - chr7.3:12272220-12272239 MS.gene09800:intron 40.0%
! CTTTTTCCAGCAAACGAATC+GGG - chr7.3:12270476-12270495 MS.gene09800:intron 40.0%
! GCCTGTTGATAAGAGTGTAA+TGG - chr7.3:12272250-12272269 MS.gene09800:intron 40.0%
!! ACAGAGTACTGGTTTCTCAA+GGG - chr7.3:12271402-12271421 MS.gene09800:intron 40.0%
!! AGGGGAAGTTCTAAATACAG+AGG - chr7.3:12271421-12271440 MS.gene09800:intron 40.0%
!! ATCGTGGTGTTACTTTCTAC+CGG - chr7.3:12270645-12270664 MS.gene09800:CDS 40.0%
!! GCTTTTTCCAGCAAACGAAT+CGG - chr7.3:12270475-12270494 MS.gene09800:intron 40.0%
!! GTTGATAGTTTGAGGACTCT+GGG - chr7.3:12272390-12272409 MS.gene09800:intron 40.0%
!! TCGTTTTTCTGTAGGGATTG+TGG - chr7.3:12270795-12270814 MS.gene09800:intron 40.0%
AATCTGCTCCCGTTCCAAAT+TGG - chr7.3:12272665-12272684 MS.gene09800:CDS 45.0%
AGTACCATCGTTATCAGCCT+GGG + chr7.3:12271914-12271933 None:intergenic 45.0%
ATCCATCCTCTACTCTCAGA+AGG + chr7.3:12270512-12270531 None:intergenic 45.0%
ATCTGCTCCCGTTCCAAATT+GGG - chr7.3:12272666-12272685 MS.gene09800:CDS 45.0%
ATGATGAACATGCACCACAG+TGG - chr7.3:12272191-12272210 MS.gene09800:intron 45.0%
ATTCCCTTCAACAACAGCTG+CGG - chr7.3:12272765-12272784 MS.gene09800:CDS 45.0%
ATTCTGCGTAGACAGAGTAC+TGG - chr7.3:12271391-12271410 MS.gene09800:intron 45.0%
CTCGTATGGGACAGTTTCTT+GGG - chr7.3:12271476-12271495 MS.gene09800:intron 45.0%
CTCTGCATAAATGTGGACGA+TGG - chr7.3:12271449-12271468 MS.gene09800:CDS 45.0%
GACGTTGGGAATCGCATATT+TGG - chr7.3:12270675-12270694 MS.gene09800:CDS 45.0%
GATGCTGCAGCAGAGAAATT+AGG + chr7.3:12272739-12272758 None:intergenic 45.0%
GTTTGCAAGTTCAGCGTAAC+TGG - chr7.3:12272219-12272238 MS.gene09800:intron 45.0%
TAGTACCATCGTTATCAGCC+TGG + chr7.3:12271915-12271934 None:intergenic 45.0%
TATCCGCAGCTGTTGTTGAA+GGG + chr7.3:12272771-12272790 None:intergenic 45.0%
TCGCTGGAGTAGGAAAATGA+GGG + chr7.3:12272828-12272847 None:intergenic 45.0%
TGAAGGAGAGTTAACTTCCC+AGG - chr7.3:12271894-12271913 MS.gene09800:intron 45.0%
TTAGTACCACTCCAGATTGG+AGG + chr7.3:12272473-12272492 None:intergenic 45.0%
! ATCATTCCCGATTCGTTTGC+TGG + chr7.3:12270485-12270504 None:intergenic 45.0%
! CTGCAGTAGAAAGAGGGTAT+GGG + chr7.3:12272862-12272881 None:intergenic 45.0%
! GGGTGGAGGTATGTTATGTT+TGG + chr7.3:12272808-12272827 None:intergenic 45.0%
! GGTTGATGCTCAGATGCTAT+GGG + chr7.3:12272452-12272471 None:intergenic 45.0%
! GTTACTTTCTACCGGAGAAC+TGG - chr7.3:12270653-12270672 MS.gene09800:CDS 45.0%
! TGCAGTAGAAAGAGGGTATG+GGG + chr7.3:12272861-12272880 None:intergenic 45.0%
!! AGGTTGATGCTCAGATGCTA+TGG + chr7.3:12272453-12272472 None:intergenic 45.0%
!! CAGAGTACTGGTTTCTCAAG+GGG - chr7.3:12271403-12271422 MS.gene09800:intron 45.0%
!! CGTTGATAGTTTGAGGACTC+TGG - chr7.3:12272389-12272408 MS.gene09800:intron 45.0%
!! GACAGAGTACTGGTTTCTCA+AGG - chr7.3:12271401-12271420 MS.gene09800:intron 45.0%
!! GGAAGCGTTGTTGTTGAGTA+TGG + chr7.3:12270384-12270403 None:intergenic 45.0%
AACAACGCTTCCGTCGACAA+CGG - chr7.3:12270392-12270411 MS.gene09800:CDS 50.0%
AACATGCACCACAGTGGAAG+TGG - chr7.3:12272197-12272216 MS.gene09800:intron 50.0%
ATAGCGAGCTAGATGCTGCA+AGG - chr7.3:12271668-12271687 MS.gene09800:CDS 50.0%
ATCTTCCATCTGAACGACGG+AGG + chr7.3:12270273-12270292 None:intergenic 50.0%
ATTCCCAACGTCCAGTTCTC+CGG + chr7.3:12270667-12270686 None:intergenic 50.0%
ATTTGATACCGCGCATGCTG+CGG - chr7.3:12270953-12270972 MS.gene09800:CDS 50.0%
CAGCTCCTGCAGTAGAAAGA+GGG + chr7.3:12272868-12272887 None:intergenic 50.0%
CATCAACCTCCAATCTGGAG+TGG - chr7.3:12272464-12272483 MS.gene09800:CDS 50.0%
CCATACCCTCTTTCTACTGC+AGG - chr7.3:12272860-12272879 MS.gene09800:CDS 50.0%
CCTGCAGTAGAAAGAGGGTA+TGG + chr7.3:12272863-12272882 None:intergenic 50.0%
CGAGCTGCGATAAAGTTTCG+TGG - chr7.3:12271092-12271111 MS.gene09800:intron 50.0%
CTATCCGCAGCTGTTGTTGA+AGG + chr7.3:12272772-12272791 None:intergenic 50.0%
CTGAGCATCAACCTCCAATC+TGG - chr7.3:12272459-12272478 MS.gene09800:CDS 50.0%
CTGCCATGCCCAATTTGGAA+CGG + chr7.3:12272677-12272696 None:intergenic 50.0%
CTGGAGTAGGAAAATGAGGG+TGG + chr7.3:12272825-12272844 None:intergenic 50.0%
CTTGCAAACCACTTCCACTG+TGG + chr7.3:12272208-12272227 None:intergenic 50.0%
GACGGAGGAATCAAAGCTAC+CGG + chr7.3:12270300-12270319 None:intergenic 50.0%
GAGTAGGAAAATGAGGGTGG+AGG + chr7.3:12272822-12272841 None:intergenic 50.0%
GCAACAACAACAGTCTGCTC+CGG + chr7.3:12270566-12270585 None:intergenic 50.0%
GCTCGTATGGGACAGTTTCT+TGG - chr7.3:12271475-12271494 MS.gene09800:intron 50.0%
GCTGCAGCAGAGAAATTAGG+TGG + chr7.3:12272736-12272755 None:intergenic 50.0%
GGAGATAGTACCGTTGTCGA+CGG + chr7.3:12270405-12270424 None:intergenic 50.0%
GTCGACAACGGTACTATCTC+CGG - chr7.3:12270404-12270423 MS.gene09800:CDS 50.0%
GTCGCTGGAGTAGGAAAATG+AGG + chr7.3:12272829-12272848 None:intergenic 50.0%
TCAGCTCCTGCAGTAGAAAG+AGG + chr7.3:12272869-12272888 None:intergenic 50.0%
TGCTCTTACGGCGATGCATA+CGG - chr7.3:12270347-12270366 MS.gene09800:CDS 50.0%
TTCTCTGCTGCAGCATCATC+AGG - chr7.3:12272742-12272761 MS.gene09800:CDS 50.0%
! ACTTCCCAGGCTGATAACGA+TGG - chr7.3:12271907-12271926 MS.gene09800:intron 50.0%
! ATCTCGCCTTCTGAGAGTAG+AGG - chr7.3:12270503-12270522 MS.gene09800:intron 50.0%
! TGCCATGCCCAATTTGGAAC+GGG + chr7.3:12272676-12272695 None:intergenic 50.0%
!! AAAGTTTCGTGGCGTCGATG+CGG - chr7.3:12271103-12271122 MS.gene09800:intron 50.0%
ACTCTCCTCCGTCGTTCAGA+TGG - chr7.3:12270265-12270284 MS.gene09800:CDS 55.0%
AGCCGGTGAAGAAGAGTCGT+CGG - chr7.3:12270597-12270616 MS.gene09800:intron 55.0%
ATCTGAACGACGGAGGAGAG+TGG + chr7.3:12270266-12270285 None:intergenic 55.0%
CTACCGGAGAACTGGACGTT+GGG - chr7.3:12270661-12270680 MS.gene09800:CDS 55.0%
CTCCCGTTCCAAATTGGGCA+TGG - chr7.3:12272671-12272690 MS.gene09800:CDS 55.0%
CTGGAGTTAGTCGCTGGAGT+AGG + chr7.3:12272838-12272857 None:intergenic 55.0%
GGACGATGGGAAGCTCGTAT+GGG - chr7.3:12271463-12271482 MS.gene09800:intron 55.0%
TACTGCGAGCTTCGTGACCT+CGG + chr7.3:12270626-12270645 None:intergenic 55.0%
TCACGAAGCTCGCAGTATCG+TGG - chr7.3:12270629-12270648 MS.gene09800:CDS 55.0%
TCCGGTGAGCTTCAACACTC+CGG - chr7.3:12270422-12270441 MS.gene09800:CDS 55.0%
TCTACCGGAGAACTGGACGT+TGG - chr7.3:12270660-12270679 MS.gene09800:CDS 55.0%
TGGACGATGGGAAGCTCGTA+TGG - chr7.3:12271462-12271481 MS.gene09800:intron 55.0%
TGGAGCTGCCATGCCCAATT+TGG + chr7.3:12272682-12272701 None:intergenic 55.0%
TGTCCGTACAACAGCTTCGC+CGG + chr7.3:12270450-12270469 None:intergenic 55.0%
TTCTCGTCCGATCATCACGG+TGG - chr7.3:12270536-12270555 MS.gene09800:intron 55.0%
! CGCCTTCTGAGAGTAGAGGA+TGG - chr7.3:12270507-12270526 MS.gene09800:intron 55.0%
! GTAGAAAGAGGGTATGGGGC+TGG + chr7.3:12272857-12272876 None:intergenic 55.0%
! TGAAAGAGCAGAGGGGCATG+AGG + chr7.3:12272319-12272338 None:intergenic 55.0%
ATGGGGCTGGAGTTAGTCGC+TGG + chr7.3:12272844-12272863 None:intergenic 60.0%
CCCCGACGACTCTTCTTCAC+CGG + chr7.3:12270602-12270621 None:intergenic 60.0%
CCGGTGAAGAAGAGTCGTCG+GGG - chr7.3:12270599-12270618 MS.gene09800:intron 60.0%
CGATCATCACGGTGGCGTAC+CGG - chr7.3:12270544-12270563 MS.gene09800:intron 60.0%
CGGTACGCCACCGTGATGAT+CGG + chr7.3:12270546-12270565 None:intergenic 60.0%
GACGGAGGAGAGTGGAAGAG+AGG + chr7.3:12270258-12270277 None:intergenic 60.0%
GCCGGTGAAGAAGAGTCGTC+GGG - chr7.3:12270598-12270617 MS.gene09800:intron 60.0%
TGTTGCTCCACGACCTCAGC+CGG - chr7.3:12270580-12270599 MS.gene09800:intron 60.0%
TTACCTTGCCGCAGCATGCG+CGG + chr7.3:12270964-12270983 None:intergenic 60.0%
! CGACTCTTCTTCACCGGCTG+AGG + chr7.3:12270596-12270615 None:intergenic 60.0%
! TTCTTCACCGGCTGAGGTCG+TGG + chr7.3:12270590-12270609 None:intergenic 60.0%
!! AGTGTCGGCAGCGTTGACGA+CGG + chr7.3:12270318-12270337 None:intergenic 60.0%
!! GCCGGAGTGTTGAAGCTCAC+CGG + chr7.3:12270426-12270445 None:intergenic 60.0%
AGAAGAGTCGTCGGGGACCG+AGG - chr7.3:12270606-12270625 MS.gene09800:CDS 65.0%
ATACCGCGCATGCTGCGGCA+AGG - chr7.3:12270958-12270977 MS.gene09800:CDS 65.0%
GAGCTTCAACACTCCGGCGC+CGG - chr7.3:12270428-12270447 MS.gene09800:CDS 65.0%
TACAACAGCTTCGCCGGCGC+CGG + chr7.3:12270444-12270463 None:intergenic 65.0%
! GCGCCGGCGAAGCTGTTGTA+CGG - chr7.3:12270444-12270463 MS.gene09800:CDS 65.0%
!! GTCGGCAGCGTTGACGACGG+AGG + chr7.3:12270315-12270334 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 12270227 12272888 12270227 ID=MS.gene09800
chr7.3 mRNA 12270227 12272888 12270227 ID=MS.gene09800.t1;Parent=MS.gene09800
chr7.3 exon 12272419 12272888 12272419 ID=MS.gene09800.t1.exon1;Parent=MS.gene09800.t1
chr7.3 CDS 12272419 12272888 12272419 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12272281 12272306 12272281 ID=MS.gene09800.t1.exon2;Parent=MS.gene09800.t1
chr7.3 CDS 12272281 12272306 12272281 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12272136 12272166 12272136 ID=MS.gene09800.t1.exon3;Parent=MS.gene09800.t1
chr7.3 CDS 12272136 12272166 12272136 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12271946 12272033 12271946 ID=MS.gene09800.t1.exon4;Parent=MS.gene09800.t1
chr7.3 CDS 12271946 12272033 12271946 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12271612 12271757 12271612 ID=MS.gene09800.t1.exon5;Parent=MS.gene09800.t1
chr7.3 CDS 12271612 12271757 12271612 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12271426 12271470 12271426 ID=MS.gene09800.t1.exon6;Parent=MS.gene09800.t1
chr7.3 CDS 12271426 12271470 12271426 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12271187 12271290 12271187 ID=MS.gene09800.t1.exon7;Parent=MS.gene09800.t1
chr7.3 CDS 12271187 12271290 12271187 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12270844 12270986 12270844 ID=MS.gene09800.t1.exon8;Parent=MS.gene09800.t1
chr7.3 CDS 12270844 12270986 12270844 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12270604 12270717 12270604 ID=MS.gene09800.t1.exon9;Parent=MS.gene09800.t1
chr7.3 CDS 12270604 12270717 12270604 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
chr7.3 exon 12270227 12270475 12270227 ID=MS.gene09800.t1.exon10;Parent=MS.gene09800.t1
chr7.3 CDS 12270227 12270475 12270227 ID=cds.MS.gene09800.t1;Parent=MS.gene09800.t1
Gene Sequence

>MS.gene09800

ATGTTGGATCTCAATCTCAACGCTGATTCCTCTCTTCCACTCTCCTCCGTCGTTCAGATGGAAGATTCATCCGGTAGCTTTGATTCCTCCGTCGTCAACGCTGCCGACACTGAAGATTCATGCTCTTACGGCGATGCATACGGTTACAACTTCGCCATACTCAACAACAACGCTTCCGTCGACAACGGTACTATCTCCGGTGAGCTTCAACACTCCGGCGCCGGCGAAGCTGTTGTACGGACAATTCAGCTTTTTCCAGCAAACGAATCGGGAATGATCTCGCCTTCTGAGAGTAGAGGATGGATGAATTTCTCGTCCGATCATCACGGTGGCGTACCGGAGCAGACTGTTGTTGTTGCTCCACGACCTCAGCCGGTGAAGAAGAGTCGTCGGGGACCGAGGTCACGAAGCTCGCAGTATCGTGGTGTTACTTTCTACCGGAGAACTGGACGTTGGGAATCGCATATTTGGTTAGCATTTCGCAATGGATCATTCTGTTTCTTCGTAGTTCAGTTCATTCAGTTTAGTTTTCACTTTCTGCATTTTTGTTTCTGAATCCACTCTGTTTTCGTTTTTCTGTAGGGATTGTGGAAAACAAGTATACTTAGGTGAGAAATCAACACTGATTAAGTGATTATTTGAGACGATTTCGTTGTTTTATTTTACGTTCTTGATCGTTCTTCCTTTTTTTAGATTTTGATCTTTGAAATTTAATTTTTCAGGTGGATTTGATACCGCGCATGCTGCGGCAAGGTAATTTTCATATTTGAATATTTTTTATATATTAATTATTTTTTTAAATATTGAATGTTTTTCATGGATTTATTTTTGTTTTTTTGTATGATTTATTTTCAGAGCATATGATCGAGCTGCGATAAAGTTTCGTGGCGTCGATGCGGATATTAATTTCAATGTCAGTGATTATGATGAAGATATAAAGCAGGTTTGTGAGAATTTGTTATTACTAATGTTGTGTTGATCTTGTTTAAAATCTGATTGTAAGTTAGTATAATTGTAGCTTTAACTTTGATTCTATTGAAGTGTAGATGAGTAATTTTTGAGATGATCTATTTTAAAATTTGAATGTTAAGTTCTAATTGTAGCATAAACTTTGATTTTATTGTTGTGTAGATGAATAACTTTACAAAGGAAGAGTTTGTGCATATTCTGCGTAGACAGAGTACTGGTTTCTCAAGGGGAAGTTCTAAATACAGAGGAGTTACTCTGCATAAATGTGGACGATGGGAAGCTCGTATGGGACAGTTTCTTGGGAAGAAGTAAGAAAATCCTTTAGTTTAATTTGATTTATTAGTTGAACCTAAAATGACTGATTTGTGATTTATTTAACCATAAACCAGTATTTAGTTCTTAATTATATTGGTCTGGGTTGTTAATTATATTGGTCTGGGTTTATGTAGGTATATATATCTTGGGCTTTTTGATAGCGAGCTAGATGCTGCAAGGTTTTAATTTATCAATCATATATAGCAGGATATCTCAAATGAAATGCCTAATTAAATATTTTGGATCATTTCACTTTTATATTTTCTTTTCTACATGTTGTGTTATTGACTTGGTTGCTCTATTGATGATTACAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTTACAAATTTTGAGGCTAGTTCTTATGAAGGAGAGTTAACTTCCCAGGCTGATAACGATGGTACTACTTATTGACCATTGAGGCTCACCTTTTTTTTGGTTTTATAATCAAATTGAATAAAACATCAATTTAGTCCATATAAACTATCACTCACTCTCTAATTTAGTCAGTCCTTAAAGTATGTCAATTAACCTTTACTATTAAGACTGGTGATTTAACTATGACGTGAAATGCAATGATGTATTTTGTGCTTTATTCAGATATCAAGCAGAATCTTGATCTGAACTTGGGTATAGCTCCTCCTTCTAACTCTGATGTTCAAATGATGAACATGCACCACAGTGGAAGTGGTTTGCAAGTTCAGCGTAACTGGGATGATATGCCTGTTGATAAGAGTGTAATGGTAAGGTCAAAAAAAAAAAAAATTTTTATATTAATTCTGCAATTCCTCATGCCCCTCTGCTCTTTCACATGAATTCAAAGTTTGCATACTTAACTTGCATCATATATTTTTAATCTGCGTTGATAGTTTGAGGACTCTGGGTCAAGATCACTCAATGTTCAGTCATCTTATGGCTTTCCCATAGCATCTGAGCATCAACCTCCAATCTGGAGTGGTACTAATTACTTTCCCGTGTGTAAGGTGAATACTAATTTTGCTTTAGTATCTTCTGCTAGTTATGAATTATCACTGTTCAATTTGATTTTGCTTCAATATCTTAAGAATCTTCTGCTGGTTATGAATTATGATTATTTGTGTTCTATTTACAGGAAAGAGCAATAGAGAATAGGATGGAATCTGCTCCCGTTCCAAATTGGGCATGGCAGCTCCAAAGTCCATATAATAATGGGTCAACTTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAACAGCTGCGGATAGTCAGATTCATTTTCCAAACATAACATACCTCCACCCTCATTTTCCTACTCCAGCGACTAACTCCAGCCCCATACCCTCTTTCTACTGCAGGAGCTGA
Protein sequence

>MS.gene09800.t1

MLDLNLNADSSLPLSSVVQMEDSSGSFDSSVVNAADTEDSCSYGDAYGYNFAILNNNASVDNGTISGELQHSGAGEAVVRTIQLFPANESGMISPSESRGWMNFSSDHHGGVPEQTVVVAPRPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMNNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELTSQADNDDIKQNLDLNLGIAPPSNSDVQMMNMHHSGSGLQVQRNWDDMPVDKSVMFEDSGSRSLNVQSSYGFPIASEHQPPIWSGTNYFPVCKERAIENRMESAPVPNWAWQLQSPYNNGSTLIPPNFSAAASSGFPSTTAADSQIHFPNITYLHPHFPTPATNSSPIPSFYCRS