Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20157.t1 | XP_003630654.2 | 96.6 | 235 | 8 | 0 | 1 | 235 | 6 | 240 | 1.80E-126 | 461.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20157.t1 | Q9C5D7 | 64.6 | 223 | 79 | 0 | 12 | 234 | 9 | 231 | 5.3e-82 | 305.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20157.t1 | G7LJL7 | 96.6 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 1.3e-126 | 461.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20157 | MS.gene053539 | PPI |
| MS.gene028389 | MS.gene20157 | PPI |
| MS.gene053535 | MS.gene20157 | PPI |
| MS.gene26463 | MS.gene20157 | PPI |
| MS.gene047856 | MS.gene20157 | PPI |
| MS.gene20157 | MS.gene35069 | PPI |
| MS.gene059423 | MS.gene20157 | PPI |
| MS.gene20157 | MS.gene28756 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20157.t1 | MTR_8g101900 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 7.65e-170 | 467 |
| MS.gene20157.t1 | MTR_8g021225 | 73.362 | 229 | 60 | 1 | 6 | 233 | 5 | 233 | 2.25e-121 | 345 |
| MS.gene20157.t1 | MTR_6g091680 | 70.996 | 231 | 67 | 0 | 5 | 235 | 8 | 238 | 1.26e-109 | 315 |
| MS.gene20157.t1 | MTR_4g085590 | 58.929 | 224 | 91 | 1 | 12 | 234 | 23 | 246 | 4.17e-96 | 281 |
| MS.gene20157.t1 | MTR_4g094925 | 54.626 | 227 | 102 | 1 | 9 | 234 | 16 | 242 | 1.12e-89 | 265 |
| MS.gene20157.t1 | MTR_4g094815 | 53.509 | 228 | 105 | 1 | 8 | 234 | 20 | 247 | 4.40e-89 | 263 |
| MS.gene20157.t1 | MTR_4g094898 | 54.825 | 228 | 102 | 1 | 8 | 234 | 20 | 247 | 3.02e-83 | 248 |
| MS.gene20157.t1 | MTR_4g094812 | 55.804 | 224 | 98 | 1 | 12 | 234 | 22 | 245 | 3.60e-80 | 241 |
| MS.gene20157.t1 | MTR_4g094368 | 52.232 | 224 | 103 | 3 | 12 | 232 | 5 | 227 | 1.52e-78 | 236 |
| MS.gene20157.t1 | MTR_4g094925 | 53.646 | 192 | 87 | 2 | 45 | 234 | 20 | 211 | 3.90e-74 | 224 |
| MS.gene20157.t1 | MTR_4g094898 | 55.914 | 186 | 81 | 1 | 50 | 234 | 1 | 186 | 3.24e-67 | 206 |
| MS.gene20157.t1 | MTR_2g070410 | 41.204 | 216 | 118 | 4 | 18 | 233 | 91 | 297 | 8.74e-49 | 162 |
| MS.gene20157.t1 | MTR_2g070410 | 41.860 | 172 | 96 | 2 | 18 | 189 | 91 | 258 | 3.81e-38 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20157.t1 | AT4G26220 | 64.574 | 223 | 79 | 0 | 12 | 234 | 9 | 231 | 8.52e-107 | 308 |
| MS.gene20157.t1 | AT4G34050 | 59.111 | 225 | 91 | 1 | 12 | 235 | 35 | 259 | 4.41e-96 | 281 |
| MS.gene20157.t1 | AT4G34050 | 59.111 | 225 | 91 | 1 | 12 | 235 | 62 | 286 | 5.48e-96 | 282 |
| MS.gene20157.t1 | AT1G67980 | 56.637 | 226 | 93 | 2 | 12 | 235 | 10 | 232 | 9.45e-88 | 259 |
| MS.gene20157.t1 | AT1G24735 | 55.947 | 227 | 95 | 3 | 12 | 235 | 16 | 240 | 1.74e-82 | 246 |
| MS.gene20157.t1 | AT1G67990 | 53.540 | 226 | 101 | 2 | 12 | 235 | 10 | 233 | 2.41e-80 | 241 |
| MS.gene20157.t1 | AT1G24735 | 45.848 | 277 | 94 | 4 | 12 | 234 | 16 | 290 | 4.35e-74 | 227 |
| MS.gene20157.t1 | AT1G24735 | 56.989 | 186 | 77 | 2 | 50 | 234 | 11 | 194 | 1.24e-70 | 214 |
| MS.gene20157.t1 | AT1G67980 | 50.909 | 165 | 78 | 1 | 70 | 234 | 2 | 163 | 9.72e-54 | 171 |
| MS.gene20157.t1 | AT3G61990 | 42.647 | 204 | 108 | 4 | 30 | 233 | 95 | 289 | 1.40e-48 | 161 |
| MS.gene20157.t1 | AT3G62000 | 40.000 | 205 | 115 | 4 | 30 | 233 | 80 | 277 | 8.75e-47 | 156 |
| MS.gene20157.t1 | AT4G34050 | 54.472 | 123 | 55 | 1 | 113 | 234 | 25 | 147 | 2.07e-44 | 146 |
| MS.gene20157.t1 | AT3G62000 | 37.383 | 214 | 123 | 5 | 11 | 223 | 64 | 267 | 7.07e-39 | 138 |
Find 39 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGAAACTACCGTTTC+TGG | 0.209949 | 4.4:+3816333 | None:intergenic |
| CCATGAGAGGCTTATCAAAT+TGG | 0.230744 | 4.4:-3816415 | MS.gene20157:CDS |
| TCAAAAGTACCTTCATTTGC+AGG | 0.353092 | 4.4:+3816480 | None:intergenic |
| TGCCTACGATAACACCCTTT+GGG | 0.369512 | 4.4:-3816373 | MS.gene20157:CDS |
| GTAATTCTTCAGTGGCTTCA+TGG | 0.374269 | 4.4:-3817254 | MS.gene20157:intron |
| TCTAAAAGTTTATCAAGAAC+TGG | 0.389451 | 4.4:+3816595 | None:intergenic |
| ACCTGATGCGGGTCAGCTAA+TGG | 0.395308 | 4.4:-3817224 | MS.gene20157:CDS |
| ATACAAACCTTTCCATCATA+TGG | 0.399941 | 4.4:+3817112 | None:intergenic |
| TTGCCTACGATAACACCCTT+TGG | 0.417902 | 4.4:-3816374 | MS.gene20157:CDS |
| TTTCAGAAACAAAGAGAGAA+TGG | 0.425659 | 4.4:-3816320 | MS.gene20157:CDS |
| GACAGAAAAGCTTATGAGAT+AGG | 0.427880 | 4.4:-3816682 | MS.gene20157:CDS |
| TTATCAAGAACTGGCAAAGC+TGG | 0.435178 | 4.4:+3816604 | None:intergenic |
| GCCATTAGCTGACCCGCATC+AGG | 0.436416 | 4.4:+3817223 | None:intergenic |
| TAATTCTTCAGTGGCTTCAT+GGG | 0.469413 | 4.4:-3817253 | MS.gene20157:intron |
| ATCAAATTGGTTAAGATCGG+TGG | 0.482512 | 4.4:-3816402 | MS.gene20157:CDS |
| GCACTTAACATTCCATATGA+TGG | 0.489413 | 4.4:-3817124 | MS.gene20157:CDS |
| AACTGTTGCCTTGCCAGAAA+CGG | 0.495235 | 4.4:-3816346 | MS.gene20157:CDS |
| CTTATCAAATTGGTTAAGAT+CGG | 0.511198 | 4.4:-3816405 | MS.gene20157:CDS |
| TTGAGAGTCTCTGCTTCTCG+TGG | 0.514299 | 4.4:+3817513 | None:intergenic |
| CATGGGCACTTCACCTGATG+CGG | 0.516416 | 4.4:-3817236 | MS.gene20157:CDS |
| TGAAACTACCGTTTCTGGCA+AGG | 0.521241 | 4.4:+3816338 | None:intergenic |
| ATGGGCACTTCACCTGATGC+GGG | 0.527395 | 4.4:-3817235 | MS.gene20157:CDS |
| CTGCAAAATAACTGCATTGG+TGG | 0.528279 | 4.4:+3817662 | None:intergenic |
| CCAATTTGATAAGCCTCTCA+TGG | 0.530119 | 4.4:+3816415 | None:intergenic |
| TAACATTCCATATGATGGAA+AGG | 0.530971 | 4.4:-3817119 | MS.gene20157:intron |
| GCAGAGCGAGGGCTTACTCA+AGG | 0.558409 | 4.4:-3817643 | MS.gene20157:intron |
| TGCTTCTCGTGGGTAAACAC+TGG | 0.559815 | 4.4:+3817524 | None:intergenic |
| GGCAACAGTTCCTCCCCAAA+GGG | 0.563275 | 4.4:+3816359 | None:intergenic |
| AGGCAACAGTTCCTCCCCAA+AGG | 0.565907 | 4.4:+3816358 | None:intergenic |
| TCAAATTGGTTAAGATCGGT+GGG | 0.567728 | 4.4:-3816401 | MS.gene20157:CDS |
| TGAGAGTCTCTGCTTCTCGT+GGG | 0.576132 | 4.4:+3817514 | None:intergenic |
| GCTCTGCAAAATAACTGCAT+TGG | 0.577755 | 4.4:+3817659 | None:intergenic |
| GCGACGGACTCACTATCTGC+AGG | 0.587918 | 4.4:-3816224 | MS.gene20157:CDS |
| ACTATTGGAATTACCATGAG+AGG | 0.588635 | 4.4:-3816428 | MS.gene20157:CDS |
| TTGATGCAGCCTGCAAATGA+AGG | 0.599302 | 4.4:-3816489 | MS.gene20157:intron |
| GCCTACGATAACACCCTTTG+GGG | 0.620350 | 4.4:-3816372 | MS.gene20157:CDS |
| TACGATAACACCCTTTGGGG+AGG | 0.624507 | 4.4:-3816369 | MS.gene20157:CDS |
| TCCCCAAAGGGTGTTATCGT+AGG | 0.628321 | 4.4:+3816371 | None:intergenic |
| ACAAAAGCAAGTTCCATACG+AGG | 0.723375 | 4.4:+3816255 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTAGATTAATTAAGT+AGG | + | chr4.4:3816328-3816347 | None:intergenic | 10.0% |
| !!! | TTAATTAATCTAAAATTTTG+TGG | - | chr4.4:3816330-3816349 | MS.gene20157:CDS | 10.0% |
| !! | AAATAACTTCTATGATTTAT+AGG | + | chr4.4:3816475-3816494 | None:intergenic | 15.0% |
| !! | AAAATTTGATTATGCATACA+AGG | - | chr4.4:3816503-3816522 | MS.gene20157:intron | 20.0% |
| !! | ACAATGTTAAATGAATATGT+TGG | - | chr4.4:3817017-3817036 | MS.gene20157:intron | 20.0% |
| !!! | AAAGTATCACATATAGTTTA+TGG | - | chr4.4:3816841-3816860 | MS.gene20157:intron | 20.0% |
| ! | AACTTCTATGATTTATAGGT+TGG | + | chr4.4:3816471-3816490 | None:intergenic | 25.0% |
| ! | AAGGAAAAGAAAAACCATTA+TGG | + | chr4.4:3817380-3817399 | None:intergenic | 25.0% |
| ! | AGGAAAAGAAAAACCATTAT+GGG | + | chr4.4:3817379-3817398 | None:intergenic | 25.0% |
| ! | AGTCTTAAGAATAATTACAG+AGG | + | chr4.4:3816434-3816453 | None:intergenic | 25.0% |
| ! | ATGCTGACAAAAATAACTAT+TGG | - | chr4.4:3817450-3817469 | MS.gene20157:intron | 25.0% |
| ! | ATGTTATTGTAATTCTTCAG+TGG | - | chr4.4:3816631-3816650 | MS.gene20157:CDS | 25.0% |
| ! | CTTATCAAATTGGTTAAGAT+CGG | - | chr4.4:3817488-3817507 | MS.gene20157:CDS | 25.0% |
| ! | TCTAAAAGTTTATCAAGAAC+TGG | + | chr4.4:3817301-3817320 | None:intergenic | 25.0% |
| !! | TAGTTCAAAAGACTTTTACT+TGG | + | chr4.4:3816874-3816893 | None:intergenic | 25.0% |
| !!! | TTTCAATGAAGCAGTTTTAA+AGG | - | chr4.4:3817613-3817632 | MS.gene20157:intron | 25.0% |
| AGGACTTCCATTCATAAAAA+AGG | - | chr4.4:3817231-3817250 | MS.gene20157:CDS | 30.0% | |
| ATACAAACCTTTCCATCATA+TGG | + | chr4.4:3816784-3816803 | None:intergenic | 30.0% | |
| CTAAACAGTTACAACAAACA+TGG | + | chr4.4:3816295-3816314 | None:intergenic | 30.0% | |
| GCTAAAAAGACAATTGAAGT+AGG | - | chr4.4:3816715-3816734 | MS.gene20157:intron | 30.0% | |
| TAAATGTATGCAAAGAGAGA+GGG | + | chr4.4:3817105-3817124 | None:intergenic | 30.0% | |
| TTTCAGAAACAAAGAGAGAA+TGG | - | chr4.4:3817573-3817592 | MS.gene20157:intron | 30.0% | |
| ! | ATTTTTGTCAGCATCAACAA+AGG | + | chr4.4:3817444-3817463 | None:intergenic | 30.0% |
| ! | CTTTTGAACTAGAACAATGA+TGG | - | chr4.4:3816883-3816902 | MS.gene20157:intron | 30.0% |
| ! | TAACATTCCATATGATGGAA+AGG | - | chr4.4:3816774-3816793 | MS.gene20157:intron | 30.0% |
| ! | TGATTTATAGGTTGGATGTA+TGG | + | chr4.4:3816463-3816482 | None:intergenic | 30.0% |
| !! | GAACTTGCTTTTGTTTCAAT+AGG | - | chr4.4:3817647-3817666 | MS.gene20157:CDS | 30.0% |
| ACTATTGGAATTACCATGAG+AGG | - | chr4.4:3817465-3817484 | MS.gene20157:intron | 35.0% | |
| ATCAAATTGGTTAAGATCGG+TGG | - | chr4.4:3817491-3817510 | MS.gene20157:CDS | 35.0% | |
| ATCTCCACATATATCTTTCC+AGG | - | chr4.4:3817343-3817362 | MS.gene20157:intron | 35.0% | |
| CTAAATGTATGCAAAGAGAG+AGG | + | chr4.4:3817106-3817125 | None:intergenic | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | - | chr4.4:3817235-3817254 | MS.gene20157:CDS | 35.0% | |
| GACAGAAAAGCTTATGAGAT+AGG | - | chr4.4:3817211-3817230 | MS.gene20157:CDS | 35.0% | |
| GCACTTAACATTCCATATGA+TGG | - | chr4.4:3816769-3816788 | MS.gene20157:intron | 35.0% | |
| TAATTCTTCAGTGGCTTCAT+GGG | - | chr4.4:3816640-3816659 | MS.gene20157:CDS | 35.0% | |
| TCAAATTGGTTAAGATCGGT+GGG | - | chr4.4:3817492-3817511 | MS.gene20157:CDS | 35.0% | |
| ! | ATCTCATAAGCTTTTCTGTC+TGG | + | chr4.4:3817211-3817230 | None:intergenic | 35.0% |
| ! | ATTGAAGTAGGAGTTTTCAC+TGG | - | chr4.4:3816727-3816746 | MS.gene20157:intron | 35.0% |
| !! | TCAAAAGTACCTTCATTTGC+AGG | + | chr4.4:3817416-3817435 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | + | chr4.4:3817241-3817260 | None:intergenic | 35.0% |
| !!! | AGTTTTAAAGGATCCTCGTA+TGG | - | chr4.4:3817625-3817644 | MS.gene20157:intron | 35.0% |
| AAACCATTATGGGTCTGACT+TGG | + | chr4.4:3817369-3817388 | None:intergenic | 40.0% | |
| AATCACCGTCAATTTGGTAG+AGG | - | chr4.4:3816970-3816989 | MS.gene20157:intron | 40.0% | |
| ACAAAAGCAAGTTCCATACG+AGG | + | chr4.4:3817641-3817660 | None:intergenic | 40.0% | |
| CCAATTTGATAAGCCTCTCA+TGG | + | chr4.4:3817481-3817500 | None:intergenic | 40.0% | |
| CCATGAGAGGCTTATCAAAT+TGG | - | chr4.4:3817478-3817497 | MS.gene20157:intron | 40.0% | |
| CTGCAAAATAACTGCATTGG+TGG | + | chr4.4:3816234-3816253 | None:intergenic | 40.0% | |
| CTGTAGAAGCCAGTATGTAT+AGG | + | chr4.4:3816817-3816836 | None:intergenic | 40.0% | |
| CTTCTCCTCTACCAAATTGA+CGG | + | chr4.4:3816978-3816997 | None:intergenic | 40.0% | |
| GAATCCAATCACCGTCAATT+TGG | - | chr4.4:3816964-3816983 | MS.gene20157:intron | 40.0% | |
| GCTCTGCAAAATAACTGCAT+TGG | + | chr4.4:3816237-3816256 | None:intergenic | 40.0% | |
| GTAATTCTTCAGTGGCTTCA+TGG | - | chr4.4:3816639-3816658 | MS.gene20157:CDS | 40.0% | |
| TAGAAGCCAGTATGTATAGG+AGG | + | chr4.4:3816814-3816833 | None:intergenic | 40.0% | |
| TCTACCAAATTGACGGTGAT+TGG | + | chr4.4:3816971-3816990 | None:intergenic | 40.0% | |
| TGCTTTCCTCCTATACATAC+TGG | - | chr4.4:3816805-3816824 | MS.gene20157:intron | 40.0% | |
| TTATCAAGAACTGGCAAAGC+TGG | + | chr4.4:3817292-3817311 | None:intergenic | 40.0% | |
| TTGGCCTGGAAAGATATATG+TGG | + | chr4.4:3817350-3817369 | None:intergenic | 40.0% | |
| ! | AGCTTTTCTGTCTGGATCTA+CGG | + | chr4.4:3817203-3817222 | None:intergenic | 40.0% |
| !! | ATACATACTGGCTTCTACAG+TGG | - | chr4.4:3816817-3816836 | MS.gene20157:intron | 40.0% |
| !! | GCTTTTGTTTCAATAGGCGA+CGG | - | chr4.4:3817653-3817672 | MS.gene20157:CDS | 40.0% |
| !! | GTTTCTGAAACTACCGTTTC+TGG | + | chr4.4:3817563-3817582 | None:intergenic | 40.0% |
| AACTGTTGCCTTGCCAGAAA+CGG | - | chr4.4:3817547-3817566 | MS.gene20157:intron | 45.0% | |
| ATCTACAGCAGGCAGACAAA+TGG | + | chr4.4:3817175-3817194 | None:intergenic | 45.0% | |
| CGTCAATTTGGTAGAGGAGA+AGG | - | chr4.4:3816976-3816995 | MS.gene20157:intron | 45.0% | |
| TCTACAGCAGGCAGACAAAT+GGG | + | chr4.4:3817174-3817193 | None:intergenic | 45.0% | |
| TGACTTCTTCAGTCAGCATC+AGG | - | chr4.4:3816591-3816610 | MS.gene20157:CDS | 45.0% | |
| TGCCTACGATAACACCCTTT+GGG | - | chr4.4:3817520-3817539 | MS.gene20157:CDS | 45.0% | |
| TTGATGCAGCCTGCAAATGA+AGG | - | chr4.4:3817404-3817423 | MS.gene20157:intron | 45.0% | |
| TTGCCTACGATAACACCCTT+TGG | - | chr4.4:3817519-3817538 | MS.gene20157:CDS | 45.0% | |
| !! | GCAGTTATTTTGCAGAGCGA+GGG | - | chr4.4:3816239-3816258 | MS.gene20157:CDS | 45.0% |
| !! | TGAAACTACCGTTTCTGGCA+AGG | + | chr4.4:3817558-3817577 | None:intergenic | 45.0% |
| !! | TGCAGTTATTTTGCAGAGCG+AGG | - | chr4.4:3816238-3816257 | MS.gene20157:CDS | 45.0% |
| AGGCCAAGTCAGACCCATAA+TGG | - | chr4.4:3817363-3817382 | MS.gene20157:intron | 50.0% | |
| CTACAGCAGGCAGACAAATG+GGG | + | chr4.4:3817173-3817192 | None:intergenic | 50.0% | |
| CTACGGCTGTAATCTACAGC+AGG | + | chr4.4:3817186-3817205 | None:intergenic | 50.0% | |
| GCCTACGATAACACCCTTTG+GGG | - | chr4.4:3817521-3817540 | MS.gene20157:CDS | 50.0% | |
| TGAGAGTCTCTGCTTCTCGT+GGG | + | chr4.4:3816382-3816401 | None:intergenic | 50.0% | |
| TGCAGGCTGCATCAAGACAA+AGG | + | chr4.4:3817399-3817418 | None:intergenic | 50.0% | |
| TGCTTCTCGTGGGTAAACAC+TGG | + | chr4.4:3816372-3816391 | None:intergenic | 50.0% | |
| TTGAGAGTCTCTGCTTCTCG+TGG | + | chr4.4:3816383-3816402 | None:intergenic | 50.0% | |
| ! | TACGATAACACCCTTTGGGG+AGG | - | chr4.4:3817524-3817543 | MS.gene20157:CDS | 50.0% |
| !! | ATTATGGGTCTGACTTGGCC+TGG | + | chr4.4:3817364-3817383 | None:intergenic | 50.0% |
| !! | TCCCCAAAGGGTGTTATCGT+AGG | + | chr4.4:3817525-3817544 | None:intergenic | 50.0% |
| ACCTGATGCGGGTCAGCTAA+TGG | - | chr4.4:3816669-3816688 | MS.gene20157:CDS | 55.0% | |
| AGGCAACAGTTCCTCCCCAA+AGG | + | chr4.4:3817538-3817557 | None:intergenic | 55.0% | |
| ATGGGCACTTCACCTGATGC+GGG | - | chr4.4:3816658-3816677 | MS.gene20157:CDS | 55.0% | |
| CATGGGCACTTCACCTGATG+CGG | - | chr4.4:3816657-3816676 | MS.gene20157:CDS | 55.0% | |
| GGCAACAGTTCCTCCCCAAA+GGG | + | chr4.4:3817537-3817556 | None:intergenic | 55.0% | |
| GCAGAGCGAGGGCTTACTCA+AGG | - | chr4.4:3816250-3816269 | MS.gene20157:CDS | 60.0% | |
| GCCATTAGCTGACCCGCATC+AGG | + | chr4.4:3816673-3816692 | None:intergenic | 60.0% | |
| ! | GCGACGGACTCACTATCTGC+AGG | - | chr4.4:3817669-3817688 | MS.gene20157:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 3816212 | 3817703 | 3816212 | ID=MS.gene20157 |
| chr4.4 | mRNA | 3816212 | 3817703 | 3816212 | ID=MS.gene20157.t1;Parent=MS.gene20157 |
| chr4.4 | exon | 3817644 | 3817703 | 3817644 | ID=MS.gene20157.t1.exon1;Parent=MS.gene20157.t1 |
| chr4.4 | CDS | 3817644 | 3817703 | 3817644 | ID=cds.MS.gene20157.t1;Parent=MS.gene20157.t1 |
| chr4.4 | exon | 3817480 | 3817559 | 3817480 | ID=MS.gene20157.t1.exon2;Parent=MS.gene20157.t1 |
| chr4.4 | CDS | 3817480 | 3817559 | 3817480 | ID=cds.MS.gene20157.t1;Parent=MS.gene20157.t1 |
| chr4.4 | exon | 3817120 | 3817264 | 3817120 | ID=MS.gene20157.t1.exon3;Parent=MS.gene20157.t1 |
| chr4.4 | CDS | 3817120 | 3817264 | 3817120 | ID=cds.MS.gene20157.t1;Parent=MS.gene20157.t1 |
| chr4.4 | exon | 3816591 | 3816722 | 3816591 | ID=MS.gene20157.t1.exon4;Parent=MS.gene20157.t1 |
| chr4.4 | CDS | 3816591 | 3816722 | 3816591 | ID=cds.MS.gene20157.t1;Parent=MS.gene20157.t1 |
| chr4.4 | exon | 3816212 | 3816502 | 3816212 | ID=MS.gene20157.t1.exon5;Parent=MS.gene20157.t1 |
| chr4.4 | CDS | 3816212 | 3816502 | 3816212 | ID=cds.MS.gene20157.t1;Parent=MS.gene20157.t1 |
| Gene Sequence |
| Protein sequence |
