Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20355.t1 | XP_003611184.2 | 90.2 | 164 | 16 | 0 | 1 | 164 | 1 | 164 | 5.00E-78 | 300.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20355.t1 | Q6K7S7 | 80.9 | 136 | 26 | 0 | 5 | 140 | 4 | 139 | 1.4e-60 | 233.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20355.t1 | G7KET5 | 90.2 | 164 | 16 | 0 | 1 | 164 | 1 | 164 | 3.6e-78 | 300.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene20355 | -0.80833 | 3.27E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene20355 | -0.800826 | 1.20E-48 | -1.69E-46 |
| MS.gene050646 | MS.gene20355 | -0.801088 | 1.06E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene20355 | -0.814206 | 1.73E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene20355 | -0.801892 | 7.26E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene20355 | -0.80045 | 1.43E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene20355 | -0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene20355 | -0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene20355 | -0.800749 | 1.25E-48 | -1.69E-46 |
| MS.gene055313 | MS.gene20355 | -0.810946 | 8.95E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene20355 | -0.81871 | 1.70E-52 | -1.69E-46 |
| MS.gene057890 | MS.gene20355 | 0.815486 | 9.02E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene20355 | -0.811417 | 7.07E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene20355 | -0.812192 | 4.80E-51 | -1.69E-46 |
| MS.gene061100 | MS.gene20355 | -0.826768 | 2.26E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20355.t1 | MTR_5g011180 | 90.244 | 164 | 16 | 0 | 1 | 164 | 1 | 164 | 2.24e-109 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20355.t1 | AT1G15220 | 63.816 | 152 | 52 | 1 | 1 | 152 | 1 | 149 | 1.84e-69 | 207 |
| MS.gene20355.t1 | AT1G15220 | 63.816 | 152 | 52 | 1 | 1 | 152 | 1 | 149 | 1.84e-69 | 207 |
Find 41 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGCTTGAAGCTGATTT+TGG | 0.150882 | 5.1:+4734562 | MS.gene20355:CDS |
| TCCTTCTCTCTTGGGGTCAA+TGG | 0.256344 | 5.1:-4734851 | None:intergenic |
| CAGACATTGCCATTCTTCTT+AGG | 0.270281 | 5.1:+4733365 | MS.gene20355:CDS |
| AAACTTGGGTTCATAGAATA+TGG | 0.276087 | 5.1:-4734590 | None:intergenic |
| AGCATTGTTTCCTTCTCTCT+TGG | 0.294607 | 5.1:-4734860 | None:intergenic |
| GCATTGTTTCCTTCTCTCTT+GGG | 0.304947 | 5.1:-4734859 | None:intergenic |
| ATCCGTGATGAAATTCGTTC+TGG | 0.340444 | 5.1:+4734517 | MS.gene20355:CDS |
| TTTGAATAGCTCTTAGTTGC+TGG | 0.357704 | 5.1:+4734743 | MS.gene20355:intron |
| AGCTGTCTGCTTATCAAACT+TGG | 0.367020 | 5.1:-4734605 | None:intergenic |
| TTAGTTGCTGGTGCAGCTGT+TGG | 0.403572 | 5.1:+4734755 | MS.gene20355:CDS |
| ATAAGCAGACAGCTGCTTTG+TGG | 0.419561 | 5.1:+4734614 | MS.gene20355:CDS |
| TGGTGCAGCTGTTGGAGTGT+GGG | 0.430297 | 5.1:+4734763 | MS.gene20355:CDS |
| CATTGTTTCCTTCTCTCTTG+GGG | 0.462108 | 5.1:-4734858 | None:intergenic |
| GTCTGCTTGAGAATCTTCAA+TGG | 0.474404 | 5.1:-4733347 | None:intergenic |
| CTGGTGCAGCTGTTGGAGTG+TGG | 0.477110 | 5.1:+4734762 | MS.gene20355:CDS |
| GACTTAAATCTCTGTGAAGC+AGG | 0.503839 | 5.1:-4734899 | None:intergenic |
| AGAAACTAATAGTCGATGCC+CGG | 0.507321 | 5.1:+4733275 | MS.gene20355:CDS |
| AGCTGCTTTGTGGTTATCAC+CGG | 0.516733 | 5.1:+4734624 | MS.gene20355:CDS |
| CATTGCCATTCTTCTTAGGA+AGG | 0.519020 | 5.1:+4733369 | MS.gene20355:CDS |
| TGTGACTGATGTCTCTAGCC+CGG | 0.529254 | 5.1:-4733294 | None:intergenic |
| AATGGATTGACTCCCACAAT+CGG | 0.532006 | 5.1:-4733329 | None:intergenic |
| TTCACAGAGATTTAAGTCAC+AGG | 0.538027 | 5.1:+4734904 | MS.gene20355:CDS |
| GTAGGTTTGAATGGCCAGTA+AGG | 0.542316 | 5.1:+4733237 | None:intergenic |
| GTGACTGATGTCTCTAGCCC+GGG | 0.544108 | 5.1:-4733293 | None:intergenic |
| ATGTGAGATGCACCGATTGT+GGG | 0.552758 | 5.1:+4733317 | MS.gene20355:CDS |
| ATGTACCTTCCTAAGAAGAA+TGG | 0.554145 | 5.1:-4733374 | None:intergenic |
| GCTGTCTGCTTATCAAACTT+GGG | 0.555802 | 5.1:-4734604 | None:intergenic |
| TTGAGACTTCCACCTGGTGG+AGG | 0.562765 | 5.1:+4734930 | MS.gene20355:CDS |
| AAAGACTAATGTTCACATCA+TGG | 0.563319 | 5.1:+4734805 | MS.gene20355:CDS |
| TCCATTGACCCCAAGAGAGA+AGG | 0.587254 | 5.1:+4734850 | MS.gene20355:CDS |
| ACCTTGCAATCTCCTCCACC+AGG | 0.588382 | 5.1:-4734942 | None:intergenic |
| GAAACTAATAGTCGATGCCC+GGG | 0.593981 | 5.1:+4733276 | MS.gene20355:CDS |
| ACCTGGTGGAGGAGATTGCA+AGG | 0.598836 | 5.1:+4734941 | MS.gene20355:CDS |
| TTCCAGAACGAATTTCATCA+CGG | 0.607002 | 5.1:-4734519 | None:intergenic |
| TCACAGAGATTTAAGTCACA+GGG | 0.630566 | 5.1:+4734905 | MS.gene20355:CDS |
| AATGTGAGATGCACCGATTG+TGG | 0.638897 | 5.1:+4733316 | MS.gene20355:CDS |
| ATGGCTCTGAATCTTGTCAG+AGG | 0.645586 | 5.1:+4734824 | MS.gene20355:CDS |
| TTGCAATCTCCTCCACCAGG+TGG | 0.666835 | 5.1:-4734939 | None:intergenic |
| GAGTTGAGACTTCCACCTGG+TGG | 0.671496 | 5.1:+4734927 | MS.gene20355:CDS |
| TTAAATCTCTGTGAAGCAGG+CGG | 0.688434 | 5.1:-4734896 | None:intergenic |
| AGGGAGTTGAGACTTCCACC+TGG | 0.704880 | 5.1:+4734924 | MS.gene20355:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATATATATATATATTCAAA+AGG | - | chr5.1:4733597-4733616 | None:intergenic | 10.0% |
| !!! | CATAAATTATTTTTTATATG+TGG | - | chr5.1:4733737-4733756 | None:intergenic | 10.0% |
| !! | AATATATATATATATCTCTG+AGG | + | chr5.1:4733601-4733620 | MS.gene20355:intron | 15.0% |
| !! | CTAAAAATTGAATTGATAAA+AGG | + | chr5.1:4733433-4733452 | MS.gene20355:intron | 15.0% |
| !! | ATATCTTAAATATTTCGATG+TGG | - | chr5.1:4734129-4734148 | None:intergenic | 20.0% |
| !! | TATATATTCAAAAGGAGTTT+AGG | - | chr5.1:4733589-4733608 | None:intergenic | 20.0% |
| !! | TATCTTAAATATTTCGATGT+GGG | - | chr5.1:4734128-4734147 | None:intergenic | 20.0% |
| !!! | AAAATAAAAGTTTCAAGTCA+TGG | + | chr5.1:4733488-4733507 | MS.gene20355:intron | 20.0% |
| !!! | AATTATTTTTTATATGTGGG+TGG | - | chr5.1:4733733-4733752 | None:intergenic | 20.0% |
| !!! | CGAAATATTTAAGATATAGA+GGG | + | chr5.1:4734132-4734151 | MS.gene20355:intron | 20.0% |
| !!! | TCAATTCAATTTTTAGAAAC+TGG | - | chr5.1:4733429-4733448 | None:intergenic | 20.0% |
| !!! | TCGAAATATTTAAGATATAG+AGG | + | chr5.1:4734131-4734150 | MS.gene20355:intron | 20.0% |
| ! | AAATCACATTGTCATGTATT+GGG | + | chr5.1:4734198-4734217 | MS.gene20355:intron | 25.0% |
| ! | AGAAGGGAATAAAAAAATCA+AGG | + | chr5.1:4733663-4733682 | MS.gene20355:intron | 25.0% |
| ! | ATTCATATAAAACTGGGAAA+AGG | + | chr5.1:4733762-4733781 | MS.gene20355:intron | 25.0% |
| ! | GAAAATTGTTCAAGTGTTTA+GGG | - | chr5.1:4734491-4734510 | None:intergenic | 25.0% |
| ! | TATCAATTTGTAGTGAAGAT+TGG | - | chr5.1:4733956-4733975 | None:intergenic | 25.0% |
| !! | AACAACAACATTTTGCATTT+TGG | - | chr5.1:4734259-4734278 | None:intergenic | 25.0% |
| !! | AATATTTAAGATATAGAGGG+TGG | + | chr5.1:4734135-4734154 | MS.gene20355:intron | 25.0% |
| !! | ACAACAACATTTTGCATTTT+GGG | - | chr5.1:4734258-4734277 | None:intergenic | 25.0% |
| !! | GGACTGTAAAACAAAATTTT+AGG | + | chr5.1:4733622-4733641 | MS.gene20355:intron | 25.0% |
| !!! | TCAATTTTTAGAAACTGGTT+AGG | - | chr5.1:4733424-4733443 | None:intergenic | 25.0% |
| !!! | TGTTTGAAAGTGAGATTTTT+TGG | + | chr5.1:4734454-4734473 | MS.gene20355:intron | 25.0% |
| AAACTTGGGTTCATAGAATA+TGG | - | chr5.1:4734593-4734612 | None:intergenic | 30.0% | |
| AAAGACTAATGTTCACATCA+TGG | + | chr5.1:4734805-4734824 | MS.gene20355:CDS | 30.0% | |
| ATAGAGAACAAAAACTGAGA+AGG | + | chr5.1:4733646-4733665 | MS.gene20355:intron | 30.0% | |
| CAAATCACATTGTCATGTAT+TGG | + | chr5.1:4734197-4734216 | MS.gene20355:intron | 30.0% | |
| GAACTAGGTTAATAATCTCA+GGG | + | chr5.1:4733522-4733541 | MS.gene20355:intron | 30.0% | |
| GGAAAATTGTTCAAGTGTTT+AGG | - | chr5.1:4734492-4734511 | None:intergenic | 30.0% | |
| GTTGGCATTCATATAAAACT+GGG | + | chr5.1:4733756-4733775 | MS.gene20355:intron | 30.0% | |
| TAAGAGTGAAATGATATCAG+TGG | - | chr5.1:4734002-4734021 | None:intergenic | 30.0% | |
| TAGAGAACAAAAACTGAGAA+GGG | + | chr5.1:4733647-4733666 | MS.gene20355:intron | 30.0% | |
| TGTTGGCATTCATATAAAAC+TGG | + | chr5.1:4733755-4733774 | MS.gene20355:intron | 30.0% | |
| ! | AAAAGCATAGAACAAATCCT+AGG | + | chr5.1:4733790-4733809 | MS.gene20355:intron | 30.0% |
| ! | CTTTGATGAACAACTTTTCA+AGG | - | chr5.1:4733865-4733884 | None:intergenic | 30.0% |
| !! | TAACGTACTTTTTATCCTCT+GGG | - | chr5.1:4733699-4733718 | None:intergenic | 30.0% |
| !! | TAGTCTTTTGTTTATGCTTC+TGG | - | chr5.1:4734793-4734812 | None:intergenic | 30.0% |
| !!! | ATGGCTAATTTTTTGGAACT+AGG | + | chr5.1:4733507-4733526 | MS.gene20355:intron | 30.0% |
| !!! | TCAAGTCATGGCTAATTTTT+TGG | + | chr5.1:4733500-4733519 | MS.gene20355:intron | 30.0% |
| AACCACTATGCACTAAAACT+TGG | - | chr5.1:4734341-4734360 | None:intergenic | 35.0% | |
| AAGTTGTTCATCAAAGCGAT+CGG | + | chr5.1:4733869-4733888 | MS.gene20355:intron | 35.0% | |
| ACCACTATGCACTAAAACTT+GGG | - | chr5.1:4734340-4734359 | None:intergenic | 35.0% | |
| ATCCACCAGGAAAAATTTAC+CGG | - | chr5.1:4734646-4734665 | None:intergenic | 35.0% | |
| ATGTACCTTCCTAAGAAGAA+TGG | - | chr5.1:4733377-4733396 | None:intergenic | 35.0% | |
| GAATGAAGAGAATGTAAGAG+TGG | - | chr5.1:4733400-4733419 | None:intergenic | 35.0% | |
| GGAACTAGGTTAATAATCTC+AGG | + | chr5.1:4733521-4733540 | MS.gene20355:intron | 35.0% | |
| GTAATCAAAACTAGAACCAG+CGG | - | chr5.1:4734408-4734427 | None:intergenic | 35.0% | |
| TCAAACACCGTAATCAAAAC+TGG | - | chr5.1:4734441-4734460 | None:intergenic | 35.0% | |
| TCACAGAGATTTAAGTCACA+GGG | + | chr5.1:4734905-4734924 | MS.gene20355:CDS | 35.0% | |
| TTCACAGAGATTTAAGTCAC+AGG | + | chr5.1:4734904-4734923 | MS.gene20355:CDS | 35.0% | |
| TTCCAGAACGAATTTCATCA+CGG | - | chr5.1:4734522-4734541 | None:intergenic | 35.0% | |
| TTTGAATAGCTCTTAGTTGC+TGG | + | chr5.1:4734743-4734762 | MS.gene20355:intron | 35.0% | |
| ! | GAATTTCATCACGGATTAAC+TGG | - | chr5.1:4734513-4734532 | None:intergenic | 35.0% |
| ! | TATCACCGGTAAATTTTTCC+TGG | + | chr5.1:4734638-4734657 | MS.gene20355:intron | 35.0% |
| ! | TTTAGTGCATAGTGGTTTTC+AGG | + | chr5.1:4734344-4734363 | MS.gene20355:intron | 35.0% |
| ! | TTTTACATCATCGTCCTTAC+TGG | - | chr5.1:4733254-4733273 | None:intergenic | 35.0% |
| ! | TTTTTATATGTGGGTGGTGT+TGG | - | chr5.1:4733727-4733746 | None:intergenic | 35.0% |
| !! | AACGTACTTTTTATCCTCTG+GGG | - | chr5.1:4733698-4733717 | None:intergenic | 35.0% |
| !! | AATTTTAAAGAGTCACAGCC+TGG | - | chr5.1:4734066-4734085 | None:intergenic | 35.0% |
| !! | ACAAAGCTTGAAGCTGATTT+TGG | + | chr5.1:4734562-4734581 | MS.gene20355:CDS | 35.0% |
| !! | GTAACGTACTTTTTATCCTC+TGG | - | chr5.1:4733700-4733719 | None:intergenic | 35.0% |
| !! | TTGATAAAAGGAGCCTTGTT+TGG | + | chr5.1:4733445-4733464 | MS.gene20355:intron | 35.0% |
| !!! | GCTGGTTCTAGTTTTGATTA+CGG | + | chr5.1:4734407-4734426 | MS.gene20355:intron | 35.0% |
| !!! | GTCAGATCCAGTTTTGATTA+CGG | + | chr5.1:4734431-4734450 | MS.gene20355:intron | 35.0% |
| AGAAACTAATAGTCGATGCC+CGG | + | chr5.1:4733275-4733294 | MS.gene20355:CDS | 40.0% | |
| AGCATTGTTTCCTTCTCTCT+TGG | - | chr5.1:4734863-4734882 | None:intergenic | 40.0% | |
| AGCTGTCTGCTTATCAAACT+TGG | - | chr5.1:4734608-4734627 | None:intergenic | 40.0% | |
| ATCCGTGATGAAATTCGTTC+TGG | + | chr5.1:4734517-4734536 | MS.gene20355:CDS | 40.0% | |
| ATTGGCAGTCATGTGTCAAA+GGG | - | chr5.1:4733938-4733957 | None:intergenic | 40.0% | |
| CAGACATTGCCATTCTTCTT+AGG | + | chr5.1:4733365-4733384 | MS.gene20355:CDS | 40.0% | |
| CATTGCCATTCTTCTTAGGA+AGG | + | chr5.1:4733369-4733388 | MS.gene20355:CDS | 40.0% | |
| CATTGTTTCCTTCTCTCTTG+GGG | - | chr5.1:4734861-4734880 | None:intergenic | 40.0% | |
| CTTACACACTTGAAAACTGC+TGG | + | chr5.1:4734027-4734046 | MS.gene20355:intron | 40.0% | |
| GACTTAAATCTCTGTGAAGC+AGG | - | chr5.1:4734902-4734921 | None:intergenic | 40.0% | |
| GCATTGTTTCCTTCTCTCTT+GGG | - | chr5.1:4734862-4734881 | None:intergenic | 40.0% | |
| GCTGTCTGCTTATCAAACTT+GGG | - | chr5.1:4734607-4734626 | None:intergenic | 40.0% | |
| GTCTGCTTGAGAATCTTCAA+TGG | - | chr5.1:4733350-4733369 | None:intergenic | 40.0% | |
| TTAAATCTCTGTGAAGCAGG+CGG | - | chr5.1:4734899-4734918 | None:intergenic | 40.0% | |
| ! | TTTTGTAGTATGCTGCTCCT+AGG | - | chr5.1:4733810-4733829 | None:intergenic | 40.0% |
| !! | AATGGATTGACTCCCACAAT+CGG | - | chr5.1:4733332-4733351 | None:intergenic | 40.0% |
| !! | GTCATGTATTGGGTTAGTTG+AGG | + | chr5.1:4734208-4734227 | MS.gene20355:intron | 40.0% |
| !! | TCCCAAGTTTTAGTGCATAG+TGG | + | chr5.1:4734336-4734355 | MS.gene20355:intron | 40.0% |
| !! | TCGTTCTGGAAAAAGTGACA+AGG | + | chr5.1:4734531-4734550 | MS.gene20355:CDS | 40.0% |
| AAAGCGATCGGATGAGAACT+TGG | + | chr5.1:4733881-4733900 | MS.gene20355:intron | 45.0% | |
| ACTTGGGAGAAAACGACAGT+TGG | - | chr5.1:4734324-4734343 | None:intergenic | 45.0% | |
| CAAGGAAAAGTAAACCCCAG+AGG | + | chr5.1:4733681-4733700 | MS.gene20355:intron | 45.0% | |
| CCATGCAACAACTCCAAACA+AGG | - | chr5.1:4733461-4733480 | None:intergenic | 45.0% | |
| CTTGGGAGAAAACGACAGTT+GGG | - | chr5.1:4734323-4734342 | None:intergenic | 45.0% | |
| GAAACTAATAGTCGATGCCC+GGG | + | chr5.1:4733276-4733295 | MS.gene20355:CDS | 45.0% | |
| GATTGGCAGTCATGTGTCAA+AGG | - | chr5.1:4733939-4733958 | None:intergenic | 45.0% | |
| ! | AGCTGCTTTGTGGTTATCAC+CGG | + | chr5.1:4734624-4734643 | MS.gene20355:CDS | 45.0% |
| ! | ATAAGCAGACAGCTGCTTTG+TGG | + | chr5.1:4734614-4734633 | MS.gene20355:CDS | 45.0% |
| ! | CACCGGTAAATTTTTCCTGG+TGG | + | chr5.1:4734641-4734660 | MS.gene20355:intron | 45.0% |
| ! | CCTTGTTTGGAGTTGTTGCA+TGG | + | chr5.1:4733458-4733477 | MS.gene20355:intron | 45.0% |
| !! | AATGTGAGATGCACCGATTG+TGG | + | chr5.1:4733316-4733335 | MS.gene20355:CDS | 45.0% |
| !! | ATGGCTCTGAATCTTGTCAG+AGG | + | chr5.1:4734824-4734843 | MS.gene20355:CDS | 45.0% |
| !! | ATGTGAGATGCACCGATTGT+GGG | + | chr5.1:4733317-4733336 | MS.gene20355:CDS | 45.0% |
| !! | GTTGGGCTGGTTTCACATAT+TGG | - | chr5.1:4734306-4734325 | None:intergenic | 45.0% |
| !! | ATATAAAAAATAATTTATGT+TGG | + | chr5.1:4733738-4733757 | MS.gene20355:intron | 5.0% |
| !!! | ATAAATTATTTTTTATATGT+GGG | - | chr5.1:4733736-4733755 | None:intergenic | 5.0% |
| !!! | TTCAATTTTTATTAAAAAAA+TGG | + | chr5.1:4734279-4734298 | MS.gene20355:intron | 5.0% |
| ACTAGAACCAGCGGTTTGAC+CGG | - | chr5.1:4734399-4734418 | None:intergenic | 50.0% | |
| CATCAAGCGATTGAGCCACA+TGG | + | chr5.1:4734096-4734115 | MS.gene20355:intron | 50.0% | |
| GAAGTGACACTTGCGATTGG+AGG | - | chr5.1:4734234-4734253 | None:intergenic | 50.0% | |
| GGTGAAGTGACACTTGCGAT+TGG | - | chr5.1:4734237-4734256 | None:intergenic | 50.0% | |
| TCCATTGACCCCAAGAGAGA+AGG | + | chr5.1:4734850-4734869 | MS.gene20355:CDS | 50.0% | |
| TCCTTCTCTCTTGGGGTCAA+TGG | - | chr5.1:4734854-4734873 | None:intergenic | 50.0% | |
| TGTGACTGATGTCTCTAGCC+CGG | - | chr5.1:4733297-4733316 | None:intergenic | 50.0% | |
| TTAGTTGCTGGTGCAGCTGT+TGG | + | chr5.1:4734755-4734774 | MS.gene20355:CDS | 50.0% | |
| !! | ATATGTGGGTGGTGTTGGTG+TGG | - | chr5.1:4733722-4733741 | None:intergenic | 50.0% |
| !! | GAGAGTGCTTTCAATCCACC+AGG | - | chr5.1:4734659-4734678 | None:intergenic | 50.0% |
| !! | TAGTGGTTTTCAGGCCCGAA+TGG | + | chr5.1:4734353-4734372 | MS.gene20355:intron | 50.0% |
| !! | TTTTCAGGCCCGAATGGACA+GGG | + | chr5.1:4734359-4734378 | MS.gene20355:intron | 50.0% |
| ACCTGGTGGAGGAGATTGCA+AGG | + | chr5.1:4734941-4734960 | MS.gene20355:CDS | 55.0% | |
| ACCTTGCAATCTCCTCCACC+AGG | - | chr5.1:4734945-4734964 | None:intergenic | 55.0% | |
| AGGGAGTTGAGACTTCCACC+TGG | + | chr5.1:4734924-4734943 | MS.gene20355:CDS | 55.0% | |
| CAAGCGATTGAGCCACATGG+AGG | + | chr5.1:4734099-4734118 | MS.gene20355:intron | 55.0% | |
| CGATGTGGGATTCCTCCATG+TGG | - | chr5.1:4734114-4734133 | None:intergenic | 55.0% | |
| CTAGAACCAGCGGTTTGACC+GGG | - | chr5.1:4734398-4734417 | None:intergenic | 55.0% | |
| GACCTATGCCCTGTCCATTC+GGG | - | chr5.1:4734370-4734389 | None:intergenic | 55.0% | |
| GAGTTGAGACTTCCACCTGG+TGG | + | chr5.1:4734927-4734946 | MS.gene20355:CDS | 55.0% | |
| GCTGGTGCATGTACTTGACC+AGG | + | chr5.1:4734045-4734064 | MS.gene20355:intron | 55.0% | |
| GGACCTATGCCCTGTCCATT+CGG | - | chr5.1:4734371-4734390 | None:intergenic | 55.0% | |
| GGAGAAAACGACAGTTGGGC+TGG | - | chr5.1:4734319-4734338 | None:intergenic | 55.0% | |
| GTGACTGATGTCTCTAGCCC+GGG | - | chr5.1:4733296-4733315 | None:intergenic | 55.0% | |
| TGGTGCAGCTGTTGGAGTGT+GGG | + | chr5.1:4734763-4734782 | MS.gene20355:CDS | 55.0% | |
| TTGAGACTTCCACCTGGTGG+AGG | + | chr5.1:4734930-4734949 | MS.gene20355:CDS | 55.0% | |
| TTGCAATCTCCTCCACCAGG+TGG | - | chr5.1:4734942-4734961 | None:intergenic | 55.0% | |
| !! | GTTTTCAGGCCCGAATGGAC+AGG | + | chr5.1:4734358-4734377 | MS.gene20355:intron | 55.0% |
| CAGGGCATAGGTCCAGTTCC+CGG | + | chr5.1:4734377-4734396 | MS.gene20355:intron | 60.0% | |
| CTGGTGCAGCTGTTGGAGTG+TGG | + | chr5.1:4734762-4734781 | MS.gene20355:CDS | 60.0% | |
| CCAGCGGTTTGACCGGGAAC+TGG | - | chr5.1:4734392-4734411 | None:intergenic | 65.0% | |
| CCAGTTCCCGGTCAAACCGC+TGG | + | chr5.1:4734389-4734408 | MS.gene20355:intron | 65.0% | |
| GGCCCGAATGGACAGGGCAT+AGG | + | chr5.1:4734365-4734384 | MS.gene20355:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4733247 | 4734970 | 4733247 | ID=MS.gene20355 |
| chr5.1 | mRNA | 4733247 | 4734970 | 4733247 | ID=MS.gene20355.t1;Parent=MS.gene20355 |
| chr5.1 | exon | 4733247 | 4733390 | 4733247 | ID=MS.gene20355.t1.exon1;Parent=MS.gene20355.t1 |
| chr5.1 | CDS | 4733247 | 4733390 | 4733247 | ID=cds.MS.gene20355.t1;Parent=MS.gene20355.t1 |
| chr5.1 | exon | 4734514 | 4734645 | 4734514 | ID=MS.gene20355.t1.exon2;Parent=MS.gene20355.t1 |
| chr5.1 | CDS | 4734514 | 4734645 | 4734514 | ID=cds.MS.gene20355.t1;Parent=MS.gene20355.t1 |
| chr5.1 | exon | 4734752 | 4734970 | 4734752 | ID=MS.gene20355.t1.exon3;Parent=MS.gene20355.t1 |
| chr5.1 | CDS | 4734752 | 4734970 | 4734752 | ID=cds.MS.gene20355.t1;Parent=MS.gene20355.t1 |
| Gene Sequence |
| Protein sequence |
