Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21690.t1 | XP_003610947.1 | 99 | 693 | 7 | 0 | 1 | 693 | 1 | 693 | 0.00E+00 | 1465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21690.t1 | Q9SXV6 | 88.2 | 693 | 82 | 0 | 1 | 693 | 1 | 693 | 0.0e+00 | 1344.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21690.t1 | G7K980 | 99.0 | 693 | 7 | 0 | 1 | 693 | 1 | 693 | 0.0e+00 | 1465.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21690 | MS.gene034308 | PPI |
| MS.gene053114 | MS.gene21690 | PPI |
| MS.gene50096 | MS.gene21690 | PPI |
| MS.gene21690 | MS.gene034307 | PPI |
| MS.gene21690 | MS.gene07774 | PPI |
| MS.gene37340 | MS.gene21690 | PPI |
| MS.gene011204 | MS.gene21690 | PPI |
| MS.gene98129 | MS.gene21690 | PPI |
| MS.gene87166 | MS.gene21690 | PPI |
| MS.gene21690 | MS.gene000594 | PPI |
| MS.gene98126 | MS.gene21690 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21690.t1 | MTR_5g008810 | 98.990 | 693 | 7 | 0 | 1 | 693 | 1 | 693 | 0.0 | 1433 |
| MS.gene21690.t1 | MTR_6g088140 | 63.989 | 697 | 228 | 3 | 1 | 693 | 1 | 678 | 0.0 | 958 |
| MS.gene21690.t1 | MTR_7g062020 | 63.688 | 705 | 244 | 4 | 1 | 693 | 1 | 705 | 0.0 | 956 |
| MS.gene21690.t1 | MTR_6g093100 | 63.202 | 712 | 243 | 5 | 1 | 693 | 1 | 712 | 0.0 | 954 |
| MS.gene21690.t1 | MTR_6g088140 | 63.338 | 671 | 223 | 3 | 1 | 667 | 1 | 652 | 0.0 | 915 |
| MS.gene21690.t1 | MTR_6g093180 | 59.510 | 694 | 278 | 3 | 1 | 693 | 1 | 692 | 0.0 | 892 |
| MS.gene21690.t1 | MTR_4g005270 | 58.046 | 696 | 288 | 4 | 1 | 693 | 1 | 695 | 0.0 | 873 |
| MS.gene21690.t1 | MTR_8g016975 | 57.328 | 696 | 293 | 4 | 1 | 693 | 1 | 695 | 0.0 | 869 |
| MS.gene21690.t1 | MTR_4g005190 | 57.328 | 696 | 293 | 4 | 1 | 693 | 1 | 695 | 0.0 | 867 |
| MS.gene21690.t1 | MTR_0013s0230 | 57.676 | 697 | 290 | 5 | 1 | 693 | 1 | 696 | 0.0 | 857 |
| MS.gene21690.t1 | MTR_6g034985 | 56.916 | 694 | 296 | 3 | 1 | 693 | 1 | 692 | 0.0 | 847 |
| MS.gene21690.t1 | MTR_4g005190 | 57.377 | 671 | 282 | 4 | 1 | 668 | 1 | 670 | 0.0 | 840 |
| MS.gene21690.t1 | MTR_6g035010 | 55.620 | 694 | 305 | 3 | 1 | 693 | 1 | 692 | 0.0 | 827 |
| MS.gene21690.t1 | MTR_8g016960 | 54.232 | 697 | 308 | 6 | 1 | 693 | 1 | 690 | 0.0 | 813 |
| MS.gene21690.t1 | MTR_8g017020 | 56.811 | 646 | 274 | 4 | 50 | 693 | 19 | 661 | 0.0 | 798 |
| MS.gene21690.t1 | MTR_7g034535 | 58.439 | 628 | 257 | 4 | 69 | 693 | 5 | 631 | 0.0 | 786 |
| MS.gene21690.t1 | MTR_3g436160 | 57.749 | 613 | 252 | 5 | 83 | 693 | 27 | 634 | 0.0 | 742 |
| MS.gene21690.t1 | MTR_8g016940 | 49.756 | 205 | 101 | 1 | 489 | 693 | 2 | 204 | 4.76e-64 | 214 |
| MS.gene21690.t1 | MTR_8g017040 | 51.429 | 70 | 33 | 1 | 1 | 69 | 1 | 70 | 1.26e-17 | 80.1 |
| MS.gene21690.t1 | MTR_3g436170 | 52.239 | 67 | 31 | 1 | 1 | 66 | 1 | 67 | 2.38e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21690.t1 | AT2G07050 | 80.375 | 693 | 136 | 0 | 1 | 693 | 1 | 693 | 0.0 | 1220 |
| MS.gene21690.t1 | AT2G07050 | 82.862 | 601 | 103 | 0 | 93 | 693 | 2 | 602 | 0.0 | 1084 |
| MS.gene21690.t1 | AT3G45130 | 65.086 | 696 | 237 | 3 | 1 | 693 | 1 | 693 | 0.0 | 918 |
| MS.gene21690.t1 | AT3G45130 | 65.086 | 696 | 237 | 3 | 1 | 693 | 1 | 693 | 0.0 | 918 |
| MS.gene21690.t1 | AT3G45130 | 65.086 | 696 | 237 | 3 | 1 | 693 | 1 | 693 | 0.0 | 918 |
| MS.gene21690.t1 | AT3G45130 | 65.086 | 696 | 237 | 3 | 1 | 693 | 1 | 693 | 0.0 | 917 |
| MS.gene21690.t1 | AT3G45130 | 65.086 | 696 | 237 | 3 | 1 | 693 | 1 | 693 | 0.0 | 917 |
| MS.gene21690.t1 | AT1G78960 | 56.671 | 697 | 297 | 4 | 1 | 693 | 1 | 696 | 0.0 | 848 |
| MS.gene21690.t1 | AT1G78960 | 56.671 | 697 | 297 | 4 | 1 | 693 | 1 | 696 | 0.0 | 848 |
| MS.gene21690.t1 | AT1G78960 | 56.671 | 697 | 297 | 4 | 1 | 693 | 1 | 696 | 0.0 | 848 |
| MS.gene21690.t1 | AT1G78955 | 57.245 | 697 | 293 | 4 | 1 | 693 | 1 | 696 | 0.0 | 848 |
| MS.gene21690.t1 | AT1G78960 | 56.671 | 697 | 297 | 4 | 1 | 693 | 1 | 696 | 0.0 | 847 |
| MS.gene21690.t1 | AT1G78950 | 57.245 | 697 | 293 | 4 | 1 | 693 | 1 | 696 | 0.0 | 842 |
| MS.gene21690.t1 | AT1G78950 | 57.245 | 697 | 293 | 4 | 1 | 693 | 10 | 705 | 0.0 | 842 |
| MS.gene21690.t1 | AT1G66960 | 53.372 | 697 | 320 | 4 | 1 | 693 | 10 | 705 | 0.0 | 800 |
| MS.gene21690.t1 | AT1G66960 | 53.372 | 697 | 320 | 4 | 1 | 693 | 1 | 696 | 0.0 | 800 |
| MS.gene21690.t1 | AT1G66960 | 53.372 | 697 | 320 | 4 | 1 | 693 | 1 | 696 | 0.0 | 800 |
| MS.gene21690.t1 | AT1G66960 | 53.372 | 697 | 320 | 4 | 1 | 693 | 1 | 696 | 0.0 | 800 |
| MS.gene21690.t1 | AT1G78970 | 54.023 | 696 | 314 | 4 | 1 | 693 | 1 | 693 | 0.0 | 788 |
| MS.gene21690.t1 | AT1G78970 | 54.023 | 696 | 314 | 4 | 1 | 693 | 1 | 693 | 0.0 | 788 |
| MS.gene21690.t1 | AT1G78970 | 54.023 | 696 | 314 | 4 | 1 | 693 | 1 | 693 | 0.0 | 788 |
| MS.gene21690.t1 | AT1G78955 | 58.320 | 631 | 260 | 3 | 65 | 693 | 2 | 631 | 0.0 | 782 |
| MS.gene21690.t1 | AT1G78955 | 58.320 | 631 | 260 | 3 | 65 | 693 | 2 | 631 | 0.0 | 781 |
| MS.gene21690.t1 | AT1G78955 | 58.940 | 604 | 245 | 3 | 65 | 666 | 2 | 604 | 0.0 | 759 |
| MS.gene21690.t1 | AT5G36150 | 49.138 | 696 | 349 | 4 | 1 | 692 | 1 | 695 | 0.0 | 743 |
| MS.gene21690.t1 | AT5G36150 | 49.138 | 696 | 349 | 4 | 1 | 692 | 1 | 695 | 0.0 | 743 |
| MS.gene21690.t1 | AT1G78500 | 49.145 | 702 | 346 | 7 | 1 | 692 | 1 | 701 | 0.0 | 730 |
| MS.gene21690.t1 | AT1G78500 | 49.145 | 702 | 346 | 7 | 1 | 692 | 1 | 701 | 0.0 | 730 |
| MS.gene21690.t1 | AT4G15370 | 48.143 | 700 | 347 | 6 | 1 | 692 | 1 | 692 | 0.0 | 714 |
| MS.gene21690.t1 | AT4G15340 | 48.645 | 701 | 350 | 6 | 1 | 692 | 1 | 700 | 0.0 | 712 |
| MS.gene21690.t1 | AT4G15370 | 47.937 | 703 | 347 | 7 | 1 | 692 | 1 | 695 | 0.0 | 709 |
| MS.gene21690.t1 | AT5G48010 | 47.076 | 701 | 361 | 5 | 1 | 692 | 1 | 700 | 0.0 | 708 |
| MS.gene21690.t1 | AT1G78960 | 58.974 | 546 | 221 | 3 | 150 | 693 | 1 | 545 | 0.0 | 699 |
| MS.gene21690.t1 | AT5G48010 | 46.648 | 701 | 356 | 6 | 1 | 692 | 1 | 692 | 0.0 | 696 |
| MS.gene21690.t1 | AT5G42600 | 46.915 | 697 | 364 | 5 | 1 | 692 | 1 | 696 | 0.0 | 672 |
| MS.gene21690.t1 | AT1G78955 | 59.579 | 522 | 208 | 3 | 174 | 693 | 1 | 521 | 0.0 | 652 |
| MS.gene21690.t1 | AT3G29255 | 43.678 | 696 | 327 | 8 | 2 | 692 | 6 | 641 | 0.0 | 593 |
| MS.gene21690.t1 | AT4G15340 | 47.887 | 568 | 286 | 6 | 1 | 559 | 1 | 567 | 0.0 | 563 |
| MS.gene21690.t1 | AT1G78480 | 37.143 | 140 | 82 | 3 | 58 | 194 | 36 | 172 | 1.69e-19 | 87.8 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTTGGTTTGGGGTAAA+AGG | 0.154236 | 5.2:-2623316 | MS.gene21690:CDS |
| TGTTCAGGTGTATTCAAATT+TGG | 0.159318 | 5.2:-2621965 | MS.gene21690:intron |
| TCACTTATGGCACTTGGTTT+GGG | 0.188803 | 5.2:-2623324 | MS.gene21690:CDS |
| ACTAACCTAATTGAAGAATT+TGG | 0.231134 | 5.2:-2625823 | MS.gene21690:CDS |
| CACTCGTGCAAGATATTCTT+TGG | 0.236923 | 5.2:-2626488 | MS.gene21690:CDS |
| AACTTGAAAGCCTCTGAATT+TGG | 0.237029 | 5.2:+2626151 | None:intergenic |
| TTCACTTATGGCACTTGGTT+TGG | 0.237239 | 5.2:-2623325 | MS.gene21690:CDS |
| TCAAGAATTACCTTATTTAC+AGG | 0.242278 | 5.2:+2626333 | None:intergenic |
| TGGGGAGTTTGCTTCACTTA+TGG | 0.245949 | 5.2:-2623337 | MS.gene21690:CDS |
| TTCAGGCTTTGTCAACATTT+AGG | 0.256339 | 5.2:-2623642 | MS.gene21690:CDS |
| TTGGACCAAATTCTTCAATT+AGG | 0.261321 | 5.2:+2625818 | None:intergenic |
| CAAGGATCCATGATTATCTA+TGG | 0.267663 | 5.2:-2626120 | MS.gene21690:CDS |
| AAATGTCATTATCTCATTAC+AGG | 0.283951 | 5.2:-2625409 | MS.gene21690:intron |
| CAAGGCCAATTCATGAAAAT+AGG | 0.293099 | 5.2:+2626441 | None:intergenic |
| GATAATATTGTTGGTGTGAT+TGG | 0.294184 | 5.2:+2627200 | None:intergenic |
| TATTTCTTCCCGACGATGCC+TGG | 0.295572 | 5.2:+2623609 | None:intergenic |
| GCCAATCCTGCTGAAACTTT+TGG | 0.309739 | 5.2:-2623818 | MS.gene21690:CDS |
| TTCCTTCATCGGATTCTCTT+TGG | 0.323424 | 5.2:+2628449 | None:intergenic |
| GCAGCTCCCATCTGGTGGTT+GGG | 0.324085 | 5.2:-2623221 | MS.gene21690:CDS |
| TGCTAACCAGGTATGGTTCT+TGG | 0.326714 | 5.2:-2623357 | MS.gene21690:intron |
| TTGCATAGGTCCTGTAAATA+AGG | 0.328833 | 5.2:-2626343 | MS.gene21690:intron |
| AAACGATGGAGAAGGGGATA+TGG | 0.329008 | 5.2:-2627686 | MS.gene21690:CDS |
| TTCTTACCTGATGATTATAA+AGG | 0.337163 | 5.2:+2627873 | None:intergenic |
| GTGTACCTCAGCAGCAATTC+AGG | 0.340622 | 5.2:-2623659 | MS.gene21690:CDS |
| AGGAGGCAGGGGATTATTTC+CGG | 0.351958 | 5.2:+2627479 | None:intergenic |
| AATAATTACTTTCAGTCCTT+CGG | 0.352555 | 5.2:+2625572 | None:intergenic |
| TTGACGAACGGATTCGATAT+CGG | 0.352813 | 5.2:+2628536 | None:intergenic |
| GGCTCTCATTGAGGCTGAAC+AGG | 0.356102 | 5.2:-2621899 | MS.gene21690:intron |
| TACAAGCTTCAGATGGTTCA+TGG | 0.356145 | 5.2:-2623546 | MS.gene21690:intron |
| GTCCTGGTGATCTTAGTAAA+TGG | 0.357085 | 5.2:-2625668 | MS.gene21690:CDS |
| GAACAAGAACCTGGATGAAA+TGG | 0.363407 | 5.2:+2627429 | None:intergenic |
| GCTAACCAGGTATGGTTCTT+GGG | 0.364562 | 5.2:-2623356 | MS.gene21690:intron |
| TCCATGATCTTTAGTTGAAA+AGG | 0.374641 | 5.2:+2625617 | None:intergenic |
| TTTCTCAAAGATAATATTGT+TGG | 0.376453 | 5.2:+2627191 | None:intergenic |
| GGTCCTATGTTTCTTATGCC+TGG | 0.385468 | 5.2:-2628294 | MS.gene21690:CDS |
| TCACGTCGGCAGACAACTTT+GGG | 0.389059 | 5.2:-2628595 | MS.gene21690:CDS |
| AAACACTGGGTGGGCTATGC+TGG | 0.390877 | 5.2:-2621920 | MS.gene21690:CDS |
| ACATCTTTCACTCTCACTTT+CGG | 0.391173 | 5.2:+2628420 | None:intergenic |
| TCTTGTGGCGATCCGGAGTT+AGG | 0.392406 | 5.2:+2628564 | None:intergenic |
| ATATCCCCTTCTCCATCGTT+TGG | 0.404510 | 5.2:+2627688 | None:intergenic |
| GAAGGTCCAAGCACCATGTT+TGG | 0.406473 | 5.2:-2627754 | MS.gene21690:CDS |
| CTGTCTAAGCAGCTCCCATC+TGG | 0.406747 | 5.2:-2623229 | MS.gene21690:CDS |
| ATTCAAATTTGGAAAGCAAC+AGG | 0.422710 | 5.2:-2621954 | MS.gene21690:CDS |
| GAAGATCATCGCTGTGTTTG+TGG | 0.425232 | 5.2:+2628490 | None:intergenic |
| TCGTTACCTTTATAATCATC+AGG | 0.425456 | 5.2:-2627879 | MS.gene21690:intron |
| GTATGAGCCTTTCTTAGAGT+TGG | 0.426533 | 5.2:+2625799 | None:intergenic |
| TATGTTACTCTAAGATTGCT+TGG | 0.426624 | 5.2:-2627718 | MS.gene21690:CDS |
| TATGTTTCTTATGCCTGGCT+TGG | 0.426756 | 5.2:-2628289 | MS.gene21690:intron |
| TAGAATAAGGATGGTGGGTG+GGG | 0.432368 | 5.2:-2627787 | MS.gene21690:CDS |
| TTCGGTATCACTTCCTTCAT+CGG | 0.438591 | 5.2:+2628438 | None:intergenic |
| GCACTTGGTTTGGGGTAAAA+GGG | 0.440113 | 5.2:-2623315 | MS.gene21690:CDS |
| GTAAAAGGGCTGATTGCTGC+TGG | 0.442118 | 5.2:-2623301 | MS.gene21690:CDS |
| CCATGATGTAGACTGGAATC+AGG | 0.443610 | 5.2:-2627147 | MS.gene21690:CDS |
| TCGGCTGTGCAGTCAGATAT+TGG | 0.447702 | 5.2:+2625591 | None:intergenic |
| GTTAGTTGAAATAATTGCTT+GGG | 0.448161 | 5.2:+2625840 | None:intergenic |
| ATCCCCTGCCTCCTGAGTTA+TGG | 0.448287 | 5.2:-2627470 | MS.gene21690:CDS |
| TGTTAAATATGCTTTGCTGC+TGG | 0.448315 | 5.2:-2626183 | MS.gene21690:CDS |
| AGCAGCTCCCATCTGGTGGT+TGG | 0.448991 | 5.2:-2623222 | MS.gene21690:CDS |
| GTGCTACTCATATAACATCC+TGG | 0.451599 | 5.2:-2627630 | MS.gene21690:CDS |
| TTGTACGGAAAGAGGTTTGT+TGG | 0.453298 | 5.2:-2627224 | MS.gene21690:CDS |
| ATCACGTCGGCAGACAACTT+TGG | 0.455540 | 5.2:-2628596 | MS.gene21690:CDS |
| TGTCGTTGTTGGTAGGTACT+TGG | 0.456413 | 5.2:-2627516 | MS.gene21690:intron |
| GTTAAATATGCTTTGCTGCT+GGG | 0.457610 | 5.2:-2626182 | MS.gene21690:CDS |
| CTTGGAGTGTTTGAATGGTC+CGG | 0.458818 | 5.2:-2627498 | MS.gene21690:CDS |
| AACTATATCCCAGGCATCGT+CGG | 0.461132 | 5.2:-2623618 | MS.gene21690:CDS |
| GGGTGGGGTTTGCATATTGA+AGG | 0.463918 | 5.2:-2627772 | MS.gene21690:CDS |
| CATAGATAATCATGGATCCT+TGG | 0.470111 | 5.2:+2626121 | None:intergenic |
| TTTAACAGATGAGCATAGAA+AGG | 0.472865 | 5.2:-2627909 | MS.gene21690:CDS |
| GGATGAAATGGAAGAATGTA+TGG | 0.473706 | 5.2:+2627441 | None:intergenic |
| ATATGGAGAAGGCACGTGAC+TGG | 0.476887 | 5.2:-2627669 | MS.gene21690:CDS |
| TTCTTTGCTATATAGTTATG+TGG | 0.477165 | 5.2:-2623683 | MS.gene21690:intron |
| GCCAAAAGTTTCAGCAGGAT+TGG | 0.477251 | 5.2:+2623817 | None:intergenic |
| CACTTATGGCACTTGGTTTG+GGG | 0.478518 | 5.2:-2623323 | MS.gene21690:CDS |
| CCCACCCAGTGTTTACTACA+TGG | 0.481032 | 5.2:+2621929 | None:intergenic |
| GTAGAATAAGGATGGTGGGT+GGG | 0.482240 | 5.2:-2627788 | MS.gene21690:intron |
| AAGATCATCGCTGTGTTTGT+GGG | 0.482356 | 5.2:+2628491 | None:intergenic |
| TTTGCTTCACTTATGGCACT+TGG | 0.482779 | 5.2:-2623330 | MS.gene21690:CDS |
| CCATGATCTTTAGTTGAAAA+GGG | 0.483692 | 5.2:+2625618 | None:intergenic |
| CAGCTCCCATCTGGTGGTTG+GGG | 0.485523 | 5.2:-2623220 | MS.gene21690:CDS |
| ACTCGTGCAAGATATTCTTT+GGG | 0.489176 | 5.2:-2626487 | MS.gene21690:CDS |
| GGTTAGTTGAAATAATTGCT+TGG | 0.492904 | 5.2:+2625839 | None:intergenic |
| AAAATTGCACCTGAGATTGT+TGG | 0.494234 | 5.2:-2625468 | MS.gene21690:CDS |
| ACTATATCCCAGGCATCGTC+GGG | 0.496045 | 5.2:-2623617 | MS.gene21690:CDS |
| TTGCCAATGTGCTACTTGTA+CGG | 0.496391 | 5.2:-2627239 | MS.gene21690:CDS |
| TGCTACTCATATAACATCCT+GGG | 0.497785 | 5.2:-2627629 | MS.gene21690:CDS |
| GGCGAGATCTTGTGGCGATC+CGG | 0.498854 | 5.2:+2628557 | None:intergenic |
| TGTGCTACTTGTACGGAAAG+AGG | 0.500165 | 5.2:-2627232 | MS.gene21690:CDS |
| TATAATCTCTTTGCATCCAA+TGG | 0.500385 | 5.2:+2625441 | None:intergenic |
| TACATTCTTCCATTTCATCC+AGG | 0.500398 | 5.2:-2627438 | MS.gene21690:intron |
| GGAGCCATAACTCAGGAGGC+AGG | 0.500631 | 5.2:+2627466 | None:intergenic |
| CAGCAATCCATAGATAATCA+TGG | 0.500824 | 5.2:+2626113 | None:intergenic |
| CTTTCAAGTTGCATCTTCCA+AGG | 0.503157 | 5.2:-2626138 | MS.gene21690:CDS |
| AATGGTTCACCAACAATCTC+AGG | 0.503298 | 5.2:+2625459 | None:intergenic |
| TGGTACCGTCACATTTCAAA+AGG | 0.507661 | 5.2:-2625648 | MS.gene21690:CDS |
| AGGTACTTGGAGTGTTTGAA+TGG | 0.508132 | 5.2:-2627503 | MS.gene21690:CDS |
| GTAATTACTCTGTCCATCAC+CGG | 0.511470 | 5.2:-2627947 | MS.gene21690:CDS |
| GTCACATTTCAAAAGGTGCT+TGG | 0.511679 | 5.2:-2625641 | MS.gene21690:CDS |
| CACTCGATCTTATAGCTGGT+TGG | 0.515521 | 5.2:-2624561 | MS.gene21690:CDS |
| TGCATTGAGAGCCCCGGTGA+TGG | 0.518721 | 5.2:+2627934 | None:intergenic |
| CAATCACTGCAGAATGAAGA+TGG | 0.519098 | 5.2:-2624605 | MS.gene21690:intron |
| TACCATACCATGATGTAGAC+TGG | 0.519792 | 5.2:-2627154 | MS.gene21690:CDS |
| TACATTCATTAAGAATTCAC+AGG | 0.520406 | 5.2:-2625779 | MS.gene21690:intron |
| AGCTCACTCGATCTTATAGC+TGG | 0.520911 | 5.2:-2624565 | MS.gene21690:CDS |
| ATTTCTTCCCGACGATGCCT+GGG | 0.521004 | 5.2:+2623610 | None:intergenic |
| ACAGAACCAAACATGGTGCT+TGG | 0.522416 | 5.2:+2627748 | None:intergenic |
| ATTTGGTCCAACTCTAAGAA+AGG | 0.522891 | 5.2:-2625806 | MS.gene21690:CDS |
| ATGTCGCCAAAAGTTTCAGC+AGG | 0.523669 | 5.2:+2623812 | None:intergenic |
| GGCTCGCAATTTATGTGCAA+AGG | 0.525212 | 5.2:-2627126 | MS.gene21690:intron |
| AGGGACCAAACGATGGAGAA+GGG | 0.525654 | 5.2:-2627693 | MS.gene21690:CDS |
| TAATTACTCTGTCCATCACC+GGG | 0.525883 | 5.2:-2627946 | MS.gene21690:CDS |
| TGAGATTGTTGGTGAACCAT+TGG | 0.526436 | 5.2:-2625457 | MS.gene21690:CDS |
| TCGATATCGGCGAGATCTTG+TGG | 0.529568 | 5.2:+2628549 | None:intergenic |
| GAGGGACCAAACGATGGAGA+AGG | 0.529699 | 5.2:-2627694 | MS.gene21690:CDS |
| GCTACAATGGAAGTCAGCTA+TGG | 0.532783 | 5.2:-2625879 | MS.gene21690:CDS |
| CATTGGCCTGGTGATTATGC+TGG | 0.535461 | 5.2:-2628315 | MS.gene21690:CDS |
| TCAACTCTTCAGAGTCATGA+TGG | 0.536089 | 5.2:-2628339 | MS.gene21690:CDS |
| CTCTCTCCCCAACCACCAGA+TGG | 0.536827 | 5.2:+2623214 | None:intergenic |
| AAGGTTTCAGAAGATTGTCC+TGG | 0.537463 | 5.2:-2625684 | MS.gene21690:CDS |
| CTACTAAAACTTACCAAGCC+AGG | 0.538897 | 5.2:+2628276 | None:intergenic |
| TTGTTTAATGTACGAAGCCA+TGG | 0.540863 | 5.2:+2628618 | None:intergenic |
| AAAGGCTGTCGAGACTGTAA+TGG | 0.544441 | 5.2:-2626403 | MS.gene21690:CDS |
| AATACTCGTTATATTTGCAT+AGG | 0.544620 | 5.2:-2626357 | MS.gene21690:CDS |
| TATGCATTATAGGAAGGATG+TGG | 0.544658 | 5.2:-2627283 | MS.gene21690:intron |
| GGCTATGCTGGCTCTCATTG+AGG | 0.544878 | 5.2:-2621908 | MS.gene21690:CDS |
| ACATTGGCAAATAGACCATC+CGG | 0.547166 | 5.2:+2627252 | None:intergenic |
| AGCCATAACTCAGGAGGCAG+GGG | 0.548779 | 5.2:+2627468 | None:intergenic |
| ATATCTTGCACGAGTGGGTG+AGG | 0.549536 | 5.2:+2626495 | None:intergenic |
| GTGTGACAACAACTTTAAGA+AGG | 0.549956 | 5.2:-2628377 | MS.gene21690:CDS |
| TAAAAGGGCTGATTGCTGCT+GGG | 0.551591 | 5.2:-2623300 | MS.gene21690:CDS |
| TTGCAGAAGGAGGCAGTCCA+TGG | 0.553517 | 5.2:-2628635 | MS.gene21690:CDS |
| ACTCTAAGATTGCTTGGTGA+GGG | 0.559954 | 5.2:-2627712 | MS.gene21690:CDS |
| TGCCAAAGAGAATCCGATGA+AGG | 0.562401 | 5.2:-2628451 | MS.gene21690:CDS |
| ATGTAATTGTAGAATAAGGA+TGG | 0.570678 | 5.2:-2627796 | MS.gene21690:intron |
| GAGCCATAACTCAGGAGGCA+GGG | 0.570773 | 5.2:+2627467 | None:intergenic |
| TTCCAGTCTACATCATGGTA+TGG | 0.571064 | 5.2:+2627152 | None:intergenic |
| GAAGGATGTGGTGTCACTGC+CGG | 0.574105 | 5.2:-2627271 | MS.gene21690:CDS |
| TATCTATGGATTGCTGAAGA+TGG | 0.576188 | 5.2:-2626106 | MS.gene21690:CDS |
| TCGATCTTATAGCTGGTTGG+AGG | 0.576532 | 5.2:-2624558 | MS.gene21690:intron |
| AAGCCAGGCATAAGAAACAT+AGG | 0.576662 | 5.2:+2628291 | None:intergenic |
| CTACAATGGAAGTCAGCTAT+GGG | 0.577848 | 5.2:-2625878 | MS.gene21690:CDS |
| GAAATGGAAGAATGTATGGA+AGG | 0.579493 | 5.2:+2627445 | None:intergenic |
| TTCAGAGTCATGATGGACAT+TGG | 0.583711 | 5.2:-2628332 | MS.gene21690:CDS |
| TACTCTAAGATTGCTTGGTG+AGG | 0.584020 | 5.2:-2627713 | MS.gene21690:CDS |
| TTTCAACTAAAGATCATGGA+TGG | 0.584652 | 5.2:-2625614 | MS.gene21690:CDS |
| CATTTAGGAAACTATATCCC+AGG | 0.586640 | 5.2:-2623627 | MS.gene21690:CDS |
| AGGTCCCATGTAGTAAACAC+TGG | 0.589141 | 5.2:-2621934 | MS.gene21690:CDS |
| CAAAGAATATCTTGCACGAG+TGG | 0.591667 | 5.2:+2626489 | None:intergenic |
| TCTAAGCAGCTCCCATCTGG+TGG | 0.600699 | 5.2:-2623226 | MS.gene21690:CDS |
| TGTGACAACAACTTTAAGAA+GGG | 0.600970 | 5.2:-2628376 | MS.gene21690:CDS |
| CCTGATTCCAGTCTACATCA+TGG | 0.601589 | 5.2:+2627147 | None:intergenic |
| TGGAGAAGGGGATATGGAGA+AGG | 0.601781 | 5.2:-2627680 | MS.gene21690:CDS |
| TGGGAGTTCGATCCTAACTC+CGG | 0.605594 | 5.2:-2628576 | MS.gene21690:CDS |
| CTAACCAGGTATGGTTCTTG+GGG | 0.606522 | 5.2:-2623355 | MS.gene21690:intron |
| AGTCATGATGGACATTGGCC+TGG | 0.607121 | 5.2:-2628327 | MS.gene21690:CDS |
| TAAAACTGCATTGAGAGCCC+CGG | 0.607279 | 5.2:+2627928 | None:intergenic |
| TCTCTCCCCAACCACCAGAT+GGG | 0.609976 | 5.2:+2623215 | None:intergenic |
| AATTGTAGAATAAGGATGGT+GGG | 0.616412 | 5.2:-2627792 | MS.gene21690:intron |
| ACTCAAAACAGAACCAAACA+TGG | 0.622100 | 5.2:+2627741 | None:intergenic |
| GAGTGAGCTCATATGTTGCA+AGG | 0.623263 | 5.2:+2624579 | None:intergenic |
| TGTAGAATAAGGATGGTGGG+TGG | 0.624423 | 5.2:-2627789 | MS.gene21690:intron |
| AAAGAATATCTTGCACGAGT+GGG | 0.627826 | 5.2:+2626490 | None:intergenic |
| CCCATGTAGTAAACACTGGG+TGG | 0.632415 | 5.2:-2621930 | MS.gene21690:CDS |
| TGAAGATGGCATGAAAATGC+AGG | 0.633629 | 5.2:-2626092 | MS.gene21690:intron |
| ATATCTGACTGCACAGCCGA+AGG | 0.633759 | 5.2:-2625588 | MS.gene21690:CDS |
| CGTGACTGGATTCTTGAGCA+TGG | 0.634097 | 5.2:-2627655 | MS.gene21690:CDS |
| CAAAGCCTGAATTGCTGCTG+AGG | 0.637022 | 5.2:+2623654 | None:intergenic |
| CCATGTAGTAAACACTGGGT+GGG | 0.637163 | 5.2:-2621929 | MS.gene21690:CDS |
| TTTCCGTACAAGTAGCACAT+TGG | 0.637997 | 5.2:+2627236 | None:intergenic |
| GCTACTCATATAACATCCTG+GGG | 0.640093 | 5.2:-2627628 | MS.gene21690:CDS |
| CTTGGTGAGGGACCAAACGA+TGG | 0.640301 | 5.2:-2627700 | MS.gene21690:CDS |
| GGGACCAAACGATGGAGAAG+GGG | 0.640614 | 5.2:-2627692 | MS.gene21690:CDS |
| TAATTGTAGAATAAGGATGG+TGG | 0.641976 | 5.2:-2627793 | MS.gene21690:intron |
| TTATCTTTCATGTCAAAACA+AGG | 0.642811 | 5.2:-2623191 | MS.gene21690:intron |
| TCTTTGGGCAACTCTACACA+AGG | 0.644183 | 5.2:-2626472 | MS.gene21690:CDS |
| TACCATTTACTAAGATCACC+AGG | 0.645528 | 5.2:+2625666 | None:intergenic |
| TGGAAACTGAAAGTTGCAGA+AGG | 0.645676 | 5.2:-2628648 | MS.gene21690:CDS |
| CCACCCAGTGTTTACTACAT+GGG | 0.649679 | 5.2:+2621930 | None:intergenic |
| GGTAGAAGATCCAAATTCAG+AGG | 0.657319 | 5.2:-2626161 | MS.gene21690:CDS |
| GGAAGGAGCCATAACTCAGG+AGG | 0.659506 | 5.2:+2627462 | None:intergenic |
| GGTCCCATGTAGTAAACACT+GGG | 0.659996 | 5.2:-2621933 | MS.gene21690:CDS |
| GATGTGGTGTCACTGCCGGA+TGG | 0.661963 | 5.2:-2627267 | MS.gene21690:CDS |
| ATAGGACCAGCATAATCACC+AGG | 0.665129 | 5.2:+2628309 | None:intergenic |
| TATGGAAGGAGCCATAACTC+AGG | 0.668533 | 5.2:+2627459 | None:intergenic |
| AAACTGAAAGTTGCAGAAGG+AGG | 0.670393 | 5.2:-2628645 | MS.gene21690:CDS |
| CTACTCATATAACATCCTGG+GGG | 0.753036 | 5.2:-2627627 | MS.gene21690:CDS |
| TCACTGCAGAATGAAGATGG+CGG | 0.756668 | 5.2:-2624602 | MS.gene21690:intron |
| GACTGGATTCTTGAGCATGG+TGG | 0.757197 | 5.2:-2627652 | MS.gene21690:CDS |
| AATTACTCTGTCCATCACCG+GGG | 0.776701 | 5.2:-2627945 | MS.gene21690:CDS |
| CGTACATTAAACAATCACGT+CGG | 0.788206 | 5.2:-2628609 | MS.gene21690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2621143 | 2628673 | 2621143 | ID=MS.gene21690 |
| chr5.2 | mRNA | 2621143 | 2628673 | 2621143 | ID=MS.gene21690.t1;Parent=MS.gene21690 |
| chr5.2 | exon | 2628290 | 2628673 | 2628290 | ID=MS.gene21690.t1.exon1;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2628290 | 2628673 | 2628290 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2627880 | 2627969 | 2627880 | ID=MS.gene21690.t1.exon2;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2627880 | 2627969 | 2627880 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2627612 | 2627806 | 2627612 | ID=MS.gene21690.t1.exon3;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2627612 | 2627806 | 2627612 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2627439 | 2627523 | 2627439 | ID=MS.gene21690.t1.exon4;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2627439 | 2627523 | 2627439 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2627127 | 2627293 | 2627127 | ID=MS.gene21690.t1.exon5;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2627127 | 2627293 | 2627127 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2626344 | 2626532 | 2626344 | ID=MS.gene21690.t1.exon6;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2626344 | 2626532 | 2626344 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2626093 | 2626206 | 2626093 | ID=MS.gene21690.t1.exon7;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2626093 | 2626206 | 2626093 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2625780 | 2625902 | 2625780 | ID=MS.gene21690.t1.exon8;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2625780 | 2625902 | 2625780 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2625581 | 2625703 | 2625581 | ID=MS.gene21690.t1.exon9;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2625581 | 2625703 | 2625581 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2625410 | 2625508 | 2625410 | ID=MS.gene21690.t1.exon10;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2625410 | 2625508 | 2625410 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2624559 | 2624615 | 2624559 | ID=MS.gene21690.t1.exon11;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2624559 | 2624615 | 2624559 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2623797 | 2623843 | 2623797 | ID=MS.gene21690.t1.exon12;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2623797 | 2623843 | 2623797 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2623547 | 2623690 | 2623547 | ID=MS.gene21690.t1.exon13;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2623547 | 2623690 | 2623547 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2623192 | 2623369 | 2623192 | ID=MS.gene21690.t1.exon14;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2623192 | 2623369 | 2623192 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2621900 | 2621980 | 2621900 | ID=MS.gene21690.t1.exon15;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2621900 | 2621980 | 2621900 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| chr5.2 | exon | 2621143 | 2621148 | 2621143 | ID=MS.gene21690.t1.exon16;Parent=MS.gene21690.t1 |
| chr5.2 | CDS | 2621143 | 2621148 | 2621143 | ID=cds.MS.gene21690.t1;Parent=MS.gene21690.t1 |
| Gene Sequence |
| Protein sequence |