Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98129.t1 | KEH28511.1 | 94.1 | 761 | 45 | 0 | 1 | 761 | 1 | 761 | 0.00E+00 | 1547.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98129.t1 | Q9LRH8 | 88.1 | 757 | 90 | 0 | 1 | 757 | 1 | 757 | 0.0e+00 | 1462.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98129.t1 | A0A072UGF7 | 94.1 | 761 | 45 | 0 | 1 | 761 | 1 | 761 | 0.0e+00 | 1547.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052986 | MS.gene98129 | 0.88237 | 1.10E-70 | -1.69E-46 |
| MS.gene052987 | MS.gene98129 | 0.881084 | 3.22E-70 | -1.69E-46 |
| MS.gene053117 | MS.gene98129 | 0.815757 | 7.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98129 | MS.gene98126 | PPI |
| MS.gene98129 | MS.gene034308 | PPI |
| MS.gene98129 | MS.gene50096 | PPI |
| MS.gene98129 | MS.gene37340 | PPI |
| MS.gene98129 | MS.gene011204 | PPI |
| MS.gene98129 | MS.gene024711 | PPI |
| MS.gene011204 | MS.gene98129 | PPI |
| MS.gene98129 | MS.gene21690 | PPI |
| MS.gene98129 | MS.gene034307 | PPI |
| MS.gene98129 | MS.gene07774 | PPI |
| MS.gene98129 | MS.gene21938 | PPI |
| MS.gene98129 | MS.gene87166 | PPI |
| MS.gene98129 | MS.gene053114 | PPI |
| MS.gene98129 | MS.gene000594 | PPI |
| MS.gene98129 | MS.gene22278 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98129.t1 | MTR_4g005270 | 94.087 | 761 | 45 | 0 | 1 | 761 | 1 | 761 | 0.0 | 1514 |
| MS.gene98129.t1 | MTR_4g005190 | 88.305 | 761 | 89 | 0 | 1 | 761 | 1 | 761 | 0.0 | 1431 |
| MS.gene98129.t1 | MTR_0013s0230 | 85.263 | 760 | 111 | 1 | 1 | 759 | 1 | 760 | 0.0 | 1390 |
| MS.gene98129.t1 | MTR_8g016975 | 78.393 | 759 | 164 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1298 |
| MS.gene98129.t1 | MTR_4g005190 | 88.191 | 669 | 79 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1258 |
| MS.gene98129.t1 | MTR_7g034535 | 83.285 | 694 | 115 | 1 | 68 | 760 | 3 | 696 | 0.0 | 1242 |
| MS.gene98129.t1 | MTR_8g016960 | 75.229 | 763 | 181 | 3 | 1 | 761 | 1 | 757 | 0.0 | 1238 |
| MS.gene98129.t1 | MTR_8g017020 | 73.123 | 759 | 170 | 2 | 1 | 759 | 1 | 725 | 0.0 | 1186 |
| MS.gene98129.t1 | MTR_3g436160 | 81.009 | 674 | 124 | 1 | 84 | 757 | 27 | 696 | 0.0 | 1158 |
| MS.gene98129.t1 | MTR_6g093180 | 60.132 | 760 | 300 | 2 | 1 | 760 | 1 | 757 | 0.0 | 990 |
| MS.gene98129.t1 | MTR_6g034985 | 57.483 | 755 | 318 | 2 | 1 | 755 | 1 | 752 | 0.0 | 941 |
| MS.gene98129.t1 | MTR_5g008810 | 58.201 | 756 | 312 | 4 | 1 | 755 | 1 | 753 | 0.0 | 920 |
| MS.gene98129.t1 | MTR_6g035010 | 54.834 | 755 | 338 | 2 | 1 | 755 | 1 | 752 | 0.0 | 892 |
| MS.gene98129.t1 | MTR_6g093100 | 53.411 | 777 | 340 | 9 | 1 | 757 | 1 | 775 | 0.0 | 845 |
| MS.gene98129.t1 | MTR_6g088140 | 53.281 | 762 | 330 | 7 | 1 | 757 | 1 | 741 | 0.0 | 841 |
| MS.gene98129.t1 | MTR_7g062020 | 52.276 | 769 | 353 | 5 | 1 | 757 | 1 | 767 | 0.0 | 832 |
| MS.gene98129.t1 | MTR_6g088140 | 52.226 | 674 | 297 | 6 | 1 | 670 | 1 | 653 | 0.0 | 733 |
| MS.gene98129.t1 | MTR_8g016940 | 71.956 | 271 | 73 | 2 | 491 | 761 | 2 | 269 | 6.75e-140 | 413 |
| MS.gene98129.t1 | MTR_3g436170 | 79.412 | 68 | 14 | 0 | 1 | 68 | 1 | 68 | 8.95e-33 | 122 |
| MS.gene98129.t1 | MTR_8g017040 | 76.119 | 67 | 16 | 0 | 1 | 67 | 1 | 67 | 2.26e-32 | 122 |
| MS.gene98129.t1 | MTR_8g016570 | 68.750 | 64 | 20 | 0 | 695 | 758 | 28 | 91 | 2.00e-24 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98129.t1 | AT1G78950 | 73.351 | 758 | 201 | 1 | 1 | 757 | 10 | 767 | 0.0 | 1190 |
| MS.gene98129.t1 | AT1G78950 | 73.351 | 758 | 201 | 1 | 1 | 757 | 1 | 758 | 0.0 | 1189 |
| MS.gene98129.t1 | AT1G78955 | 72.823 | 758 | 205 | 1 | 1 | 757 | 1 | 758 | 0.0 | 1184 |
| MS.gene98129.t1 | AT1G78960 | 69.231 | 754 | 231 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1153 |
| MS.gene98129.t1 | AT1G78960 | 69.231 | 754 | 231 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1153 |
| MS.gene98129.t1 | AT1G78960 | 69.231 | 754 | 231 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1153 |
| MS.gene98129.t1 | AT1G66960 | 66.180 | 754 | 254 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1104 |
| MS.gene98129.t1 | AT1G66960 | 66.180 | 754 | 254 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1104 |
| MS.gene98129.t1 | AT1G66960 | 66.180 | 754 | 254 | 1 | 1 | 753 | 10 | 763 | 0.0 | 1104 |
| MS.gene98129.t1 | AT1G66960 | 66.180 | 754 | 254 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1104 |
| MS.gene98129.t1 | AT1G78960 | 69.156 | 723 | 222 | 1 | 1 | 722 | 1 | 723 | 0.0 | 1103 |
| MS.gene98129.t1 | AT1G78970 | 68.915 | 756 | 231 | 2 | 1 | 755 | 1 | 753 | 0.0 | 1096 |
| MS.gene98129.t1 | AT1G78970 | 68.915 | 756 | 231 | 2 | 1 | 755 | 1 | 753 | 0.0 | 1096 |
| MS.gene98129.t1 | AT1G78970 | 68.915 | 756 | 231 | 2 | 1 | 755 | 1 | 753 | 0.0 | 1096 |
| MS.gene98129.t1 | AT1G78955 | 73.410 | 692 | 184 | 0 | 66 | 757 | 2 | 693 | 0.0 | 1090 |
| MS.gene98129.t1 | AT1G78955 | 73.212 | 657 | 176 | 0 | 66 | 722 | 2 | 658 | 0.0 | 1028 |
| MS.gene98129.t1 | AT5G36150 | 56.728 | 758 | 327 | 1 | 1 | 757 | 1 | 758 | 0.0 | 964 |
| MS.gene98129.t1 | AT5G36150 | 56.728 | 758 | 327 | 1 | 1 | 757 | 1 | 758 | 0.0 | 964 |
| MS.gene98129.t1 | AT1G78960 | 70.978 | 603 | 175 | 0 | 151 | 753 | 1 | 603 | 0.0 | 951 |
| MS.gene98129.t1 | AT4G15370 | 56.974 | 760 | 315 | 4 | 1 | 755 | 1 | 753 | 0.0 | 946 |
| MS.gene98129.t1 | AT4G15370 | 56.750 | 763 | 315 | 5 | 1 | 755 | 1 | 756 | 0.0 | 943 |
| MS.gene98129.t1 | AT1G78955 | 72.727 | 605 | 165 | 0 | 66 | 670 | 2 | 606 | 0.0 | 942 |
| MS.gene98129.t1 | AT1G78500 | 57.702 | 766 | 315 | 4 | 1 | 757 | 1 | 766 | 0.0 | 941 |
| MS.gene98129.t1 | AT1G78500 | 57.702 | 766 | 315 | 4 | 1 | 757 | 1 | 766 | 0.0 | 941 |
| MS.gene98129.t1 | AT2G07050 | 58.179 | 758 | 313 | 4 | 1 | 757 | 1 | 755 | 0.0 | 938 |
| MS.gene98129.t1 | AT1G78955 | 75.300 | 583 | 144 | 0 | 175 | 757 | 1 | 583 | 0.0 | 938 |
| MS.gene98129.t1 | AT5G48010 | 56.454 | 767 | 322 | 5 | 1 | 756 | 1 | 766 | 0.0 | 936 |
| MS.gene98129.t1 | AT4G15340 | 56.767 | 761 | 323 | 3 | 1 | 755 | 1 | 761 | 0.0 | 930 |
| MS.gene98129.t1 | AT5G48010 | 55.671 | 767 | 320 | 6 | 1 | 756 | 1 | 758 | 0.0 | 916 |
| MS.gene98129.t1 | AT5G42600 | 55.995 | 759 | 331 | 3 | 1 | 757 | 1 | 758 | 0.0 | 913 |
| MS.gene98129.t1 | AT2G07050 | 58.824 | 663 | 270 | 3 | 96 | 757 | 4 | 664 | 0.0 | 844 |
| MS.gene98129.t1 | AT3G45130 | 54.029 | 757 | 338 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene98129.t1 | AT3G45130 | 54.029 | 757 | 338 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene98129.t1 | AT3G45130 | 54.029 | 757 | 338 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene98129.t1 | AT3G45130 | 54.029 | 757 | 338 | 6 | 1 | 753 | 1 | 751 | 0.0 | 815 |
| MS.gene98129.t1 | AT3G45130 | 54.029 | 757 | 338 | 6 | 1 | 753 | 1 | 751 | 0.0 | 815 |
| MS.gene98129.t1 | AT3G29255 | 50.396 | 758 | 315 | 5 | 2 | 757 | 6 | 704 | 0.0 | 799 |
| MS.gene98129.t1 | AT4G15340 | 56.790 | 567 | 239 | 3 | 1 | 561 | 1 | 567 | 0.0 | 691 |
| MS.gene98129.t1 | AT1G78480 | 45.865 | 133 | 66 | 3 | 71 | 200 | 48 | 177 | 1.90e-27 | 110 |
Find 195 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAATCATATAACCTTTC+TGG | 0.122719 | 4.1:+89299764 | None:intergenic |
| CAAGGGTCCCAGATTATTTA+TGG | 0.135657 | 4.1:-89300648 | MS.gene98129:CDS |
| ATACTTACTTCTAACCATTT+TGG | 0.189571 | 4.1:+89299509 | None:intergenic |
| GTGATCTCGAATCCAGTTTC+TGG | 0.196858 | 4.1:+89304016 | None:intergenic |
| CTTTGATACAAGATCTGATA+TGG | 0.229253 | 4.1:-89301014 | MS.gene98129:CDS |
| GCACATAGGTGACGTGATTT+TGG | 0.229991 | 4.1:+89301153 | None:intergenic |
| TCTTCTTCACTACCTGCTTC+TGG | 0.268680 | 4.1:+89319450 | None:intergenic |
| CAATATCTTGTTGTCGCTTC+AGG | 0.275321 | 4.1:-89299741 | MS.gene98129:intron |
| CAGGACCAATTTCCTCAATT+AGG | 0.297744 | 4.1:+89300435 | None:intergenic |
| TGGGGAGTTTGCTTCACTTA+TGG | 0.303728 | 4.1:-89299215 | MS.gene98129:CDS |
| CACAATTAGTTGATGGTTCA+TGG | 0.306139 | 4.1:-89299247 | MS.gene98129:CDS |
| ACAAACTGCATGGGCTCTTA+TGG | 0.309727 | 4.1:-89298889 | MS.gene98129:CDS |
| TATATATGTATGCGGATTCT+TGG | 0.310560 | 4.1:-89304080 | MS.gene98129:CDS |
| TCTGAAATCCATAAATAATC+TGG | 0.316537 | 4.1:+89300640 | None:intergenic |
| GCCAATTGCCTTCTTCCAAT+TGG | 0.323544 | 4.1:+89298684 | None:intergenic |
| ATGGTTCATGGTATGGAAAC+TGG | 0.323823 | 4.1:-89299235 | MS.gene98129:CDS |
| ACCAACCTAATTGAGGAAAT+TGG | 0.324873 | 4.1:-89300440 | MS.gene98129:CDS |
| CAGGTTAAGGATAACCCTTC+TGG | 0.330588 | 4.1:-89300044 | MS.gene98129:CDS |
| GAAGATACACAATTAGTTGA+TGG | 0.335959 | 4.1:-89299254 | MS.gene98129:CDS |
| TTTGCTTCACTTATGGTTGT+TGG | 0.348643 | 4.1:-89299208 | MS.gene98129:CDS |
| CCAATTGCCTTCTTCCAATT+GGG | 0.353518 | 4.1:+89298685 | None:intergenic |
| TAAATTTCTTCTCAGAATAC+AGG | 0.354758 | 4.1:-89299117 | MS.gene98129:CDS |
| CATTGGGCTGCTCAAATTGC+AGG | 0.359867 | 4.1:-89314281 | MS.gene98129:CDS |
| CAGGGAAAAGATGGTGGATG+GGG | 0.367747 | 4.1:-89299098 | MS.gene98129:CDS |
| ATGCCAATGTCTTACTTGTA+TGG | 0.370974 | 4.1:-89301261 | MS.gene98129:CDS |
| AGACCTGTGGTGACCTCCTT+TGG | 0.373378 | 4.1:-89319371 | MS.gene98129:CDS |
| CAACTAATTGTGTATCTTCA+AGG | 0.379320 | 4.1:+89299258 | None:intergenic |
| GTGTTCTGTATCTACATTAC+AGG | 0.379694 | 4.1:-89304407 | MS.gene98129:CDS |
| ATCTCTTTCTTCCTATGCCC+TGG | 0.383363 | 4.1:+89299311 | None:intergenic |
| CTCTCAACTGTAAGATTAGT+GGG | 0.388205 | 4.1:+89301214 | None:intergenic |
| TTTATGTATGCTTGCTTGTT+GGG | 0.389967 | 4.1:-89300710 | MS.gene98129:CDS |
| TTGTATGGGAAGAGGTTTGT+AGG | 0.390441 | 4.1:-89301246 | MS.gene98129:CDS |
| TATGTTTCATTGTTACTTGA+AGG | 0.395088 | 4.1:+89300920 | None:intergenic |
| TAATTATTGCAGAGTAGAAA+TGG | 0.402361 | 4.1:-89299563 | MS.gene98129:intron |
| ATTAATACAATGCAGACTTT+TGG | 0.407417 | 4.1:-89300509 | MS.gene98129:intron |
| TATGGTTGTTGGTTTGCTCT+TGG | 0.409666 | 4.1:-89299197 | MS.gene98129:CDS |
| AGCCAGCAGGAGCTCCAAAA+TGG | 0.409927 | 4.1:-89299523 | MS.gene98129:CDS |
| AGGGAAAAGATGGTGGATGG+GGG | 0.413278 | 4.1:-89299097 | MS.gene98129:CDS |
| CTTGTGCTAGAGCCAGAAAC+TGG | 0.419488 | 4.1:-89304028 | MS.gene98129:CDS |
| ATCTCTCTGCGATGCTCTTG+TGG | 0.420270 | 4.1:+89304365 | None:intergenic |
| CCCAATTGGAAGAAGGCAAT+TGG | 0.421549 | 4.1:-89298685 | MS.gene98129:CDS |
| GGCATTAATTCATGCTGGAC+AGG | 0.421558 | 4.1:-89298868 | MS.gene98129:intron |
| AACTTCAAGCAAACAATAGA+TGG | 0.422648 | 4.1:-89314404 | MS.gene98129:CDS |
| TTTCTATAACAACCGCTTCA+AGG | 0.423165 | 4.1:-89319397 | MS.gene98129:CDS |
| CTTGCGAATCGCAGCACAAT+TGG | 0.427073 | 4.1:+89299145 | None:intergenic |
| GGGAAAAGATGGTGGATGGG+GGG | 0.439696 | 4.1:-89299096 | MS.gene98129:CDS |
| TGCAAACTTGTGATGGCCAT+TGG | 0.440134 | 4.1:-89314298 | MS.gene98129:CDS |
| GGAAAATATCTCTATACATT+GGG | 0.440208 | 4.1:+89298323 | None:intergenic |
| CAGATGTATGTACCTCTTGA+AGG | 0.442699 | 4.1:-89298930 | MS.gene98129:CDS |
| AAATGGTGGATTGGCAGCTT+GGG | 0.443691 | 4.1:-89299546 | MS.gene98129:CDS |
| TCTCTCAACTGTAAGATTAG+TGG | 0.444432 | 4.1:+89301213 | None:intergenic |
| ATTGCTCATCAATTCCCAAT+TGG | 0.449966 | 4.1:-89298699 | MS.gene98129:CDS |
| GAAATGGTGGATTGGCAGCT+TGG | 0.454209 | 4.1:-89299547 | MS.gene98129:CDS |
| TATTTATGGATTTCAGAAGA+TGG | 0.454800 | 4.1:-89300634 | MS.gene98129:CDS |
| AGAAGGCAATTGGCCCCAAC+AGG | 0.455088 | 4.1:-89298675 | MS.gene98129:intron |
| TTCTTGTAAGCATCTCCATT+TGG | 0.455730 | 4.1:+89300679 | None:intergenic |
| GTGTAACACATATACCTTCA+TGG | 0.456066 | 4.1:-89303989 | MS.gene98129:CDS |
| TCATTTCTTCCTATGCATCC+AGG | 0.456615 | 4.1:-89303686 | MS.gene98129:intron |
| TGTAACACATATACCTTCAT+GGG | 0.458008 | 4.1:-89303988 | MS.gene98129:CDS |
| GATGGTGTAAAGATAGAAGA+TGG | 0.460920 | 4.1:-89314386 | MS.gene98129:CDS |
| CACAAGTTTGCAATGCTACT+AGG | 0.461725 | 4.1:+89314309 | None:intergenic |
| TATTTATTGCAGGATATCTC+AGG | 0.464041 | 4.1:-89298376 | MS.gene98129:intron |
| TTAGTTGATGGTTCATGGTA+TGG | 0.464120 | 4.1:-89299242 | MS.gene98129:CDS |
| TTGTTCAAGAAGCTATATCC+AGG | 0.467138 | 4.1:-89299329 | MS.gene98129:CDS |
| ATCCTTTACCTATAGATACT+TGG | 0.470409 | 4.1:-89303764 | MS.gene98129:intron |
| AAGAATGAAGATGGAGGATG+GGG | 0.472987 | 4.1:-89304149 | MS.gene98129:CDS |
| CTTTCTGATTGCACCGCAGA+AGG | 0.473175 | 4.1:-89299948 | MS.gene98129:CDS |
| AGATACTTGGTGTATATGAT+TGG | 0.473190 | 4.1:-89303751 | MS.gene98129:CDS |
| GGTTGTTGGTTTGCTCTTGG+TGG | 0.474677 | 4.1:-89299194 | MS.gene98129:CDS |
| TTGGCAGCTTGGGAGCCAGC+AGG | 0.474725 | 4.1:-89299536 | MS.gene98129:CDS |
| CAAAACTAGTATCCCATACT+TGG | 0.476140 | 4.1:+89300483 | None:intergenic |
| TGAAGAATGAAGATGGAGGA+TGG | 0.476820 | 4.1:-89304151 | MS.gene98129:intron |
| GGGAAAATATCTCTATACAT+TGG | 0.478197 | 4.1:+89298322 | None:intergenic |
| ACCAATTTCCTCAATTAGGT+TGG | 0.480640 | 4.1:+89300439 | None:intergenic |
| AGTACTGAGATGAACCTGTT+GGG | 0.484347 | 4.1:+89298661 | None:intergenic |
| CTGAAATCCATAAATAATCT+GGG | 0.486063 | 4.1:+89300641 | None:intergenic |
| GCTTGCCACCAACCTAATTG+AGG | 0.487186 | 4.1:-89300447 | MS.gene98129:CDS |
| ATTGGTCCTGCACTTGCAAA+AGG | 0.487624 | 4.1:-89300422 | MS.gene98129:CDS |
| GGTGGCAAGCAAAGCTTGAA+TGG | 0.488505 | 4.1:+89300460 | None:intergenic |
| CTCAGAATACAGGGAAAAGA+TGG | 0.491185 | 4.1:-89299107 | MS.gene98129:CDS |
| TACAGGGAAAAGATGGTGGA+TGG | 0.491290 | 4.1:-89299100 | MS.gene98129:CDS |
| GCAAACTTGTGATGGCCATT+GGG | 0.491932 | 4.1:-89314297 | MS.gene98129:CDS |
| GAAGAATGAAGATGGAGGAT+GGG | 0.493389 | 4.1:-89304150 | MS.gene98129:intron |
| AATTTCCTCAATTAGGTTGG+TGG | 0.497565 | 4.1:+89300442 | None:intergenic |
| AATCAGAAAGTTGCCATCCT+TGG | 0.500310 | 4.1:+89299961 | None:intergenic |
| ATGTTTCATTGTTACTTGAA+GGG | 0.504409 | 4.1:+89300921 | None:intergenic |
| AGCTGAAGATAGCAGAAGGT+GGG | 0.505774 | 4.1:-89319533 | MS.gene98129:CDS |
| CTTATGGCATTAATTCATGC+TGG | 0.507436 | 4.1:-89298873 | MS.gene98129:CDS |
| TGTCTTACTTGTATGGGAAG+AGG | 0.508691 | 4.1:-89301254 | MS.gene98129:CDS |
| ATGTATCGTCATATTTCTAA+AGG | 0.509540 | 4.1:-89300008 | MS.gene98129:CDS |
| CATATCAGATCTTGTATCAA+AGG | 0.511080 | 4.1:+89301015 | None:intergenic |
| TCTCTCTGCGATGCTCTTGT+GGG | 0.511865 | 4.1:+89304366 | None:intergenic |
| GACTATTCTCATCCTCATAG+TGG | 0.513461 | 4.1:+89300896 | None:intergenic |
| TTTGATACAAGATCTGATAT+GGG | 0.514002 | 4.1:-89301013 | MS.gene98129:CDS |
| TTAATTGAACCTGGATGCAT+AGG | 0.515203 | 4.1:+89303677 | None:intergenic |
| TTGCCATCCTTGGTCTTGAT+CGG | 0.515315 | 4.1:+89299971 | None:intergenic |
| CAGCACGGTGAAGAGGAGTA+TGG | 0.519755 | 4.1:+89298726 | None:intergenic |
| TCCTTGGTCTTGATCGGAGA+AGG | 0.521574 | 4.1:+89299977 | None:intergenic |
| CTAAAATGTGGTGTTATTGT+CGG | 0.521728 | 4.1:-89301293 | MS.gene98129:CDS |
| CCGAGCCACTTCTCACCCAC+TGG | 0.523300 | 4.1:-89300972 | MS.gene98129:CDS |
| TGCCAATGTCTTACTTGTAT+GGG | 0.524216 | 4.1:-89301260 | MS.gene98129:CDS |
| ACAGGGAAAAGATGGTGGAT+GGG | 0.524543 | 4.1:-89299099 | MS.gene98129:CDS |
| GAAACTGGATTCGAGATCAC+GGG | 0.532091 | 4.1:-89304013 | MS.gene98129:CDS |
| ATACATAACCATTGCGTCTG+TGG | 0.532623 | 4.1:-89300872 | MS.gene98129:CDS |
| ATCAATTCCCAATTGGAAGA+AGG | 0.533922 | 4.1:-89298692 | MS.gene98129:CDS |
| ATGTTGCCTCCAGAGATTGT+GGG | 0.536709 | 4.1:-89299800 | MS.gene98129:CDS |
| ACTTGGTGTATATGATTGGT+CGG | 0.536909 | 4.1:-89303747 | MS.gene98129:CDS |
| CTTGGTGTATATGATTGGTC+GGG | 0.537490 | 4.1:-89303746 | MS.gene98129:CDS |
| TGGAACCTGTCTACGATACT+CGG | 0.539231 | 4.1:+89298285 | None:intergenic |
| TGATTTCATGAAGAAATCTC+AGG | 0.542023 | 4.1:-89300396 | MS.gene98129:intron |
| GCATTGTCTTGACCTCCATC+AGG | 0.542070 | 4.1:+89304050 | None:intergenic |
| GCAGAGTAGAAATGGTGGAT+TGG | 0.542661 | 4.1:-89299555 | MS.gene98129:intron |
| AATGAAACATATCCACTATG+AGG | 0.543508 | 4.1:-89300908 | MS.gene98129:CDS |
| TTGCACCGCAGAAGGATTGA+AGG | 0.544669 | 4.1:-89299940 | MS.gene98129:intron |
| TTCAAGGAATCGAACTGCAT+TGG | 0.547595 | 4.1:+89299274 | None:intergenic |
| GAAGGAAGGATCCAAAACTC+AGG | 0.548916 | 4.1:+89303707 | None:intergenic |
| AATGTTGCCTCCAGAGATTG+TGG | 0.556294 | 4.1:-89299801 | MS.gene98129:CDS |
| ACTCGGCTAGAGCCCACAAT+GGG | 0.556442 | 4.1:+89298302 | None:intergenic |
| AGCAGGTAGTGAAGAAGAGA+GGG | 0.559238 | 4.1:-89319445 | MS.gene98129:CDS |
| CAAATGTTGTACAAACTGCA+TGG | 0.559539 | 4.1:-89298899 | MS.gene98129:CDS |
| TGGTTCATGGTATGGAAACT+GGG | 0.560851 | 4.1:-89299234 | MS.gene98129:CDS |
| ACGCCAAAGGAGGTCACCAC+AGG | 0.562760 | 4.1:+89319368 | None:intergenic |
| GCGACAACGACATTAAGAAA+AGG | 0.562936 | 4.1:-89314341 | MS.gene98129:CDS |
| TCTAGCCGAGTATCGTAGAC+AGG | 0.564583 | 4.1:-89298290 | MS.gene98129:CDS |
| CGTTATTTACAGCTAAAATG+TGG | 0.565556 | 4.1:-89301305 | MS.gene98129:intron |
| TCTCCGATCAAGACCAAGGA+TGG | 0.565849 | 4.1:-89299974 | MS.gene98129:CDS |
| CGCTTCAAGGTTAAGACCTG+TGG | 0.569018 | 4.1:-89319384 | MS.gene98129:CDS |
| AGAAACTGGATTCGAGATCA+CGG | 0.569820 | 4.1:-89304014 | MS.gene98129:CDS |
| AGATCTTGTATCAAAGGATG+AGG | 0.570364 | 4.1:+89301021 | None:intergenic |
| GGATGCATAGGAAGAAATGA+AGG | 0.572300 | 4.1:+89303689 | None:intergenic |
| TGGGAGTATGATCCAGAAGC+AGG | 0.576042 | 4.1:-89319462 | MS.gene98129:CDS |
| GTCATATTTCTAAAGGCTCG+TGG | 0.576187 | 4.1:-89300001 | MS.gene98129:CDS |
| AGAAGCTATATCCAGGGCAT+AGG | 0.579101 | 4.1:-89299322 | MS.gene98129:CDS |
| AAGGAAGGATCCAAAACTCA+GGG | 0.579130 | 4.1:+89303708 | None:intergenic |
| AAATTTCTTCTCAGAATACA+GGG | 0.583280 | 4.1:-89299116 | MS.gene98129:CDS |
| TTTGACCGACTTCCTTCAAG+AGG | 0.589707 | 4.1:+89298918 | None:intergenic |
| TTATTGCAGAGTAGAAATGG+TGG | 0.590089 | 4.1:-89299560 | MS.gene98129:intron |
| TACTCTTGAAATCTCCAGAA+GGG | 0.595481 | 4.1:+89300030 | None:intergenic |
| AAACTCTAACCTTTGCACAT+AGG | 0.595995 | 4.1:+89301139 | None:intergenic |
| AATGTGGTGTTATTGTCGGT+TGG | 0.597120 | 4.1:-89301289 | MS.gene98129:CDS |
| AGTTACCTTCAATCCTTCTG+CGG | 0.597422 | 4.1:+89299935 | None:intergenic |
| TGTTCAAGAAGCTATATCCA+GGG | 0.600083 | 4.1:-89299328 | MS.gene98129:CDS |
| CCAGTGGGTGAGAAGTGGCT+CGG | 0.601156 | 4.1:+89300972 | None:intergenic |
| CTGCAATTTGAGCAGCCCAA+TGG | 0.601311 | 4.1:+89314282 | None:intergenic |
| AAATGTTGTACAAACTGCAT+GGG | 0.602539 | 4.1:-89298898 | MS.gene98129:CDS |
| ATCACGTCACCTATGTGCAA+AGG | 0.602835 | 4.1:-89301148 | MS.gene98129:intron |
| TTCCCATACAAGTAAGACAT+TGG | 0.603791 | 4.1:+89301258 | None:intergenic |
| AAAGGCCAGTGGGTGAGAAG+TGG | 0.605928 | 4.1:+89300967 | None:intergenic |
| TCTCTGACTAGGTTGTTGAA+AGG | 0.606030 | 4.1:+89300949 | None:intergenic |
| AAGCAGGTAGTGAAGAAGAG+AGG | 0.609374 | 4.1:-89319446 | MS.gene98129:CDS |
| AGAAGATGGAATGACCATGC+AGG | 0.609510 | 4.1:-89300620 | MS.gene98129:intron |
| CACAGGTCTTAACCTTGAAG+CGG | 0.610752 | 4.1:+89319385 | None:intergenic |
| ATTCTTGGAGAAGGACCTGA+TGG | 0.611208 | 4.1:-89304065 | MS.gene98129:CDS |
| ATGTATGCTTGCTTGTTGGG+TGG | 0.611438 | 4.1:-89300707 | MS.gene98129:CDS |
| TCGATACATATATTGTCACC+AGG | 0.613959 | 4.1:-89304339 | MS.gene98129:intron |
| ATACTCTTGAAATCTCCAGA+AGG | 0.615559 | 4.1:+89300029 | None:intergenic |
| AGAATACAGGGAAAAGATGG+TGG | 0.616907 | 4.1:-89299104 | MS.gene98129:CDS |
| GCTGAAGATAGCAGAAGGTG+GGG | 0.618439 | 4.1:-89319532 | MS.gene98129:CDS |
| AAGGGAGGCATGTAAAACAT+AGG | 0.619041 | 4.1:+89314257 | None:intergenic |
| TGTTGCCTCCAGAGATTGTG+GGG | 0.619714 | 4.1:-89299799 | MS.gene98129:CDS |
| CACTCAACTATATATGTATG+CGG | 0.620441 | 4.1:-89304088 | MS.gene98129:CDS |
| CACACACACGCACACCTGCA+TGG | 0.620567 | 4.1:+89300606 | None:intergenic |
| GTAGCATTGCAAACTTGTGA+TGG | 0.622125 | 4.1:-89314305 | MS.gene98129:CDS |
| CTTACAAGAAGCATCTCGCA+AGG | 0.622342 | 4.1:-89300666 | MS.gene98129:CDS |
| TGTTGGGTGGAAGATCCAAA+TGG | 0.626156 | 4.1:-89300694 | MS.gene98129:CDS |
| ATGTACCTCTTGAAGGAAGT+CGG | 0.626245 | 4.1:-89298923 | MS.gene98129:CDS |
| GGGAAAAGATGGAACCAGAA+AGG | 0.633031 | 4.1:-89299778 | MS.gene98129:CDS |
| TGTATGCGGATTCTTGGAGA+AGG | 0.633118 | 4.1:-89304074 | MS.gene98129:CDS |
| GCATAGGAAGAAATGAAGGA+AGG | 0.633205 | 4.1:+89303693 | None:intergenic |
| AAGCTGAAGATAGCAGAAGG+TGG | 0.637683 | 4.1:-89319534 | MS.gene98129:CDS |
| GTACTGAGATGAACCTGTTG+GGG | 0.642007 | 4.1:+89298662 | None:intergenic |
| TGGAAGCTGAAGATAGCAGA+AGG | 0.644474 | 4.1:-89319537 | MS.gene98129:CDS |
| CTTGGAGAAGGACCTGATGG+AGG | 0.647821 | 4.1:-89304062 | MS.gene98129:CDS |
| TCTCAACTGTAAGATTAGTG+GGG | 0.648191 | 4.1:+89301215 | None:intergenic |
| ACCTTCTCCGATCAAGACCA+AGG | 0.650017 | 4.1:-89299978 | MS.gene98129:CDS |
| TACTCGGCTAGAGCCCACAA+TGG | 0.651093 | 4.1:+89298301 | None:intergenic |
| AAGTATATACTCACCAAGGG+AGG | 0.652692 | 4.1:+89314242 | None:intergenic |
| AGGAAGGATCCAAAACTCAG+GGG | 0.654693 | 4.1:+89303709 | None:intergenic |
| TCACACACAGTGGAAGACAA+TGG | 0.659462 | 4.1:+89298265 | None:intergenic |
| GTAACACATATACCTTCATG+GGG | 0.659712 | 4.1:-89303987 | MS.gene98129:CDS |
| ATATGTTGAGTGCACTGCAT+CGG | 0.662571 | 4.1:-89299369 | MS.gene98129:CDS |
| TTACAAGAAGCATCTCGCAA+GGG | 0.666284 | 4.1:-89300665 | MS.gene98129:CDS |
| GGAAGGATCCAAAACTCAGG+GGG | 0.672851 | 4.1:+89303710 | None:intergenic |
| AGAATGAAGATGGAGGATGG+GGG | 0.678820 | 4.1:-89304148 | MS.gene98129:CDS |
| TACGTACCTGAAAACGCCAA+AGG | 0.680468 | 4.1:+89319355 | None:intergenic |
| GTTGAGTGCAGTACAAAACA+TGG | 0.687114 | 4.1:+89304103 | None:intergenic |
| TAGGTTGTTGAAAGGCCAGT+GGG | 0.691106 | 4.1:+89300957 | None:intergenic |
| GTACCTGAAAACGCCAAAGG+AGG | 0.691769 | 4.1:+89319358 | None:intergenic |
| TAAATTGCAGTCACACACAG+TGG | 0.693669 | 4.1:+89298255 | None:intergenic |
| CTAGGTTGTTGAAAGGCCAG+TGG | 0.694356 | 4.1:+89300956 | None:intergenic |
| AAACTGGATTCGAGATCACG+GGG | 0.694930 | 4.1:-89304012 | MS.gene98129:CDS |
| GGTTCATGGTATGGAAACTG+GGG | 0.700924 | 4.1:-89299233 | MS.gene98129:CDS |
| GTTGCCTCCAGAGATTGTGG+GGG | 0.736124 | 4.1:-89299798 | MS.gene98129:CDS |
| TAACACATATACCTTCATGG+GGG | 0.776805 | 4.1:-89303986 | MS.gene98129:CDS |
| AACTGGATTCGAGATCACGG+GGG | 0.806043 | 4.1:-89304011 | MS.gene98129:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 89298234 | 89319562 | 89298234 | ID=MS.gene98129 |
| chr4.1 | mRNA | 89298234 | 89319562 | 89298234 | ID=MS.gene98129.t1;Parent=MS.gene98129 |
| chr4.1 | exon | 89319362 | 89319562 | 89319362 | ID=MS.gene98129.t1.exon1;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89319362 | 89319562 | 89319362 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89314256 | 89314441 | 89314256 | ID=MS.gene98129.t1.exon2;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89314256 | 89314441 | 89314256 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89304340 | 89304429 | 89304340 | ID=MS.gene98129.t1.exon3;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89304340 | 89304429 | 89304340 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89303971 | 89304168 | 89303971 | ID=MS.gene98129.t1.exon4;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89303971 | 89304168 | 89303971 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89303687 | 89303771 | 89303687 | ID=MS.gene98129.t1.exon5;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89303687 | 89303771 | 89303687 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89301149 | 89301315 | 89301149 | ID=MS.gene98129.t1.exon6;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89301149 | 89301315 | 89301149 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89300867 | 89301058 | 89300867 | ID=MS.gene98129.t1.exon7;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89300867 | 89301058 | 89300867 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89300621 | 89300734 | 89300621 | ID=MS.gene98129.t1.exon8;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89300621 | 89300734 | 89300621 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89300397 | 89300516 | 89300397 | ID=MS.gene98129.t1.exon9;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89300397 | 89300516 | 89300397 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89299941 | 89300063 | 89299941 | ID=MS.gene98129.t1.exon10;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89299941 | 89300063 | 89299941 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89299742 | 89299840 | 89299742 | ID=MS.gene98129.t1.exon11;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89299742 | 89299840 | 89299742 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89299517 | 89299573 | 89299517 | ID=MS.gene98129.t1.exon12;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89299517 | 89299573 | 89299517 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89299070 | 89299438 | 89299070 | ID=MS.gene98129.t1.exon13;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89299070 | 89299438 | 89299070 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89298869 | 89298949 | 89298869 | ID=MS.gene98129.t1.exon14;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89298869 | 89298949 | 89298869 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89298676 | 89298759 | 89298676 | ID=MS.gene98129.t1.exon15;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89298676 | 89298759 | 89298676 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| chr4.1 | exon | 89298234 | 89298386 | 89298234 | ID=MS.gene98129.t1.exon16;Parent=MS.gene98129.t1 |
| chr4.1 | CDS | 89298234 | 89298386 | 89298234 | ID=cds.MS.gene98129.t1;Parent=MS.gene98129.t1 |
| Gene Sequence |
| Protein sequence |
