Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053114.t1 | XP_003604121.1 | 97.2 | 762 | 9 | 1 | 1 | 750 | 1 | 762 | 0.00E+00 | 1577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053114.t1 | Q9LRH8 | 93.4 | 758 | 38 | 1 | 1 | 746 | 1 | 758 | 0.0e+00 | 1521.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053114.t1 | Q8GSL7 | 97.2 | 762 | 9 | 1 | 1 | 750 | 1 | 762 | 0.0e+00 | 1577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053114 | MS.gene50096 | 0.996497 | 2.69E-228 | -1.69E-46 |
| MS.gene053114 | MS.gene52844 | 0.820712 | 5.93E-53 | -1.69E-46 |
| MS.gene053114 | MS.gene53239 | 0.815845 | 7.50E-52 | -1.69E-46 |
| MS.gene053114 | MS.gene58274 | 0.820935 | 5.27E-53 | -1.69E-46 |
| MS.gene053114 | MS.gene98126 | 0.992903 | 3.57E-196 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98126 | MS.gene053114 | PPI |
| MS.gene024711 | MS.gene053114 | PPI |
| MS.gene053114 | MS.gene21690 | PPI |
| MS.gene053114 | MS.gene034307 | PPI |
| MS.gene053114 | MS.gene07774 | PPI |
| MS.gene053114 | MS.gene21938 | PPI |
| MS.gene053114 | MS.gene87166 | PPI |
| MS.gene50096 | MS.gene053114 | PPI |
| MS.gene053114 | MS.gene000594 | PPI |
| MS.gene37340 | MS.gene053114 | PPI |
| MS.gene053114 | MS.gene034308 | PPI |
| MS.gene011204 | MS.gene053114 | PPI |
| MS.gene98129 | MS.gene053114 | PPI |
| MS.gene87166 | MS.gene053114 | PPI |
| MS.gene22278 | MS.gene053114 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053114.t1 | MTR_4g005190 | 97.244 | 762 | 9 | 1 | 1 | 750 | 1 | 762 | 0.0 | 1543 |
| MS.gene053114.t1 | MTR_4g005270 | 89.093 | 761 | 71 | 1 | 1 | 749 | 1 | 761 | 0.0 | 1431 |
| MS.gene053114.t1 | MTR_0013s0230 | 85.059 | 763 | 101 | 2 | 1 | 750 | 1 | 763 | 0.0 | 1385 |
| MS.gene053114.t1 | MTR_4g005190 | 96.861 | 669 | 9 | 1 | 1 | 657 | 1 | 669 | 0.0 | 1350 |
| MS.gene053114.t1 | MTR_8g016975 | 78.478 | 762 | 152 | 1 | 1 | 750 | 1 | 762 | 0.0 | 1294 |
| MS.gene053114.t1 | MTR_7g034535 | 85.489 | 696 | 100 | 1 | 56 | 750 | 3 | 698 | 0.0 | 1264 |
| MS.gene053114.t1 | MTR_8g016960 | 75.360 | 763 | 169 | 3 | 1 | 750 | 1 | 757 | 0.0 | 1234 |
| MS.gene053114.t1 | MTR_8g017020 | 75.600 | 750 | 161 | 2 | 1 | 750 | 1 | 728 | 0.0 | 1217 |
| MS.gene053114.t1 | MTR_3g436160 | 83.704 | 675 | 106 | 1 | 72 | 746 | 27 | 697 | 0.0 | 1192 |
| MS.gene053114.t1 | MTR_6g093180 | 61.060 | 755 | 279 | 3 | 1 | 743 | 1 | 752 | 0.0 | 995 |
| MS.gene053114.t1 | MTR_6g034985 | 56.821 | 755 | 311 | 3 | 1 | 743 | 1 | 752 | 0.0 | 928 |
| MS.gene053114.t1 | MTR_5g008810 | 57.540 | 756 | 305 | 5 | 1 | 743 | 1 | 753 | 0.0 | 918 |
| MS.gene053114.t1 | MTR_6g035010 | 55.364 | 755 | 322 | 3 | 1 | 743 | 1 | 752 | 0.0 | 892 |
| MS.gene053114.t1 | MTR_6g088140 | 54.000 | 750 | 331 | 8 | 1 | 745 | 1 | 741 | 0.0 | 853 |
| MS.gene053114.t1 | MTR_6g093100 | 52.896 | 777 | 332 | 9 | 1 | 745 | 1 | 775 | 0.0 | 845 |
| MS.gene053114.t1 | MTR_7g062020 | 51.625 | 769 | 346 | 6 | 1 | 745 | 1 | 767 | 0.0 | 838 |
| MS.gene053114.t1 | MTR_6g088140 | 52.719 | 662 | 300 | 7 | 1 | 658 | 1 | 653 | 0.0 | 736 |
| MS.gene053114.t1 | MTR_8g016940 | 75.368 | 272 | 65 | 1 | 479 | 750 | 2 | 271 | 4.69e-147 | 431 |
| MS.gene053114.t1 | MTR_8g016570 | 73.016 | 63 | 17 | 0 | 683 | 745 | 28 | 90 | 5.89e-26 | 103 |
| MS.gene053114.t1 | MTR_8g017040 | 73.214 | 56 | 15 | 0 | 1 | 56 | 1 | 56 | 1.37e-24 | 100 |
| MS.gene053114.t1 | MTR_3g436170 | 75.000 | 56 | 14 | 0 | 1 | 56 | 1 | 56 | 6.82e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053114.t1 | AT1G78950 | 75.099 | 759 | 176 | 2 | 1 | 746 | 1 | 759 | 0.0 | 1216 |
| MS.gene053114.t1 | AT1G78950 | 75.099 | 759 | 176 | 2 | 1 | 746 | 10 | 768 | 0.0 | 1216 |
| MS.gene053114.t1 | AT1G78955 | 74.177 | 759 | 183 | 2 | 1 | 746 | 1 | 759 | 0.0 | 1200 |
| MS.gene053114.t1 | AT1G78960 | 70.955 | 754 | 206 | 2 | 1 | 741 | 1 | 754 | 0.0 | 1166 |
| MS.gene053114.t1 | AT1G78960 | 70.955 | 754 | 206 | 2 | 1 | 741 | 1 | 754 | 0.0 | 1166 |
| MS.gene053114.t1 | AT1G78960 | 70.955 | 754 | 206 | 2 | 1 | 741 | 1 | 754 | 0.0 | 1166 |
| MS.gene053114.t1 | AT1G78955 | 75.325 | 693 | 171 | 0 | 54 | 746 | 2 | 694 | 0.0 | 1123 |
| MS.gene053114.t1 | AT1G78960 | 70.816 | 723 | 198 | 2 | 1 | 710 | 1 | 723 | 0.0 | 1114 |
| MS.gene053114.t1 | AT1G66960 | 66.844 | 754 | 237 | 2 | 1 | 741 | 10 | 763 | 0.0 | 1104 |
| MS.gene053114.t1 | AT1G66960 | 66.844 | 754 | 237 | 2 | 1 | 741 | 1 | 754 | 0.0 | 1103 |
| MS.gene053114.t1 | AT1G66960 | 66.844 | 754 | 237 | 2 | 1 | 741 | 1 | 754 | 0.0 | 1103 |
| MS.gene053114.t1 | AT1G66960 | 66.844 | 754 | 237 | 2 | 1 | 741 | 1 | 754 | 0.0 | 1103 |
| MS.gene053114.t1 | AT1G78970 | 69.577 | 756 | 214 | 3 | 1 | 743 | 1 | 753 | 0.0 | 1098 |
| MS.gene053114.t1 | AT1G78970 | 69.577 | 756 | 214 | 3 | 1 | 743 | 1 | 753 | 0.0 | 1098 |
| MS.gene053114.t1 | AT1G78970 | 69.577 | 756 | 214 | 3 | 1 | 743 | 1 | 753 | 0.0 | 1098 |
| MS.gene053114.t1 | AT1G78955 | 75.038 | 657 | 164 | 0 | 54 | 710 | 2 | 658 | 0.0 | 1058 |
| MS.gene053114.t1 | AT1G78960 | 73.134 | 603 | 162 | 0 | 139 | 741 | 1 | 603 | 0.0 | 978 |
| MS.gene053114.t1 | AT1G78955 | 77.568 | 584 | 131 | 0 | 163 | 746 | 1 | 584 | 0.0 | 969 |
| MS.gene053114.t1 | AT1G78955 | 74.380 | 605 | 155 | 0 | 54 | 658 | 2 | 606 | 0.0 | 968 |
| MS.gene053114.t1 | AT5G36150 | 56.332 | 758 | 318 | 2 | 1 | 745 | 1 | 758 | 0.0 | 954 |
| MS.gene053114.t1 | AT5G36150 | 56.332 | 758 | 318 | 2 | 1 | 745 | 1 | 758 | 0.0 | 954 |
| MS.gene053114.t1 | AT1G78500 | 58.486 | 766 | 297 | 6 | 1 | 745 | 1 | 766 | 0.0 | 941 |
| MS.gene053114.t1 | AT1G78500 | 58.486 | 766 | 297 | 6 | 1 | 745 | 1 | 766 | 0.0 | 941 |
| MS.gene053114.t1 | AT5G48010 | 56.845 | 767 | 307 | 6 | 1 | 744 | 1 | 766 | 0.0 | 936 |
| MS.gene053114.t1 | AT2G07050 | 57.652 | 758 | 305 | 5 | 1 | 745 | 1 | 755 | 0.0 | 934 |
| MS.gene053114.t1 | AT4G15370 | 56.596 | 758 | 305 | 5 | 1 | 741 | 1 | 751 | 0.0 | 934 |
| MS.gene053114.t1 | AT4G15370 | 56.373 | 761 | 305 | 6 | 1 | 741 | 1 | 754 | 0.0 | 931 |
| MS.gene053114.t1 | AT4G15340 | 57.596 | 757 | 303 | 4 | 1 | 739 | 1 | 757 | 0.0 | 927 |
| MS.gene053114.t1 | AT5G48010 | 56.323 | 767 | 303 | 7 | 1 | 744 | 1 | 758 | 0.0 | 918 |
| MS.gene053114.t1 | AT5G42600 | 56.522 | 759 | 315 | 5 | 1 | 745 | 1 | 758 | 0.0 | 916 |
| MS.gene053114.t1 | AT2G07050 | 59.125 | 663 | 268 | 3 | 84 | 745 | 4 | 664 | 0.0 | 857 |
| MS.gene053114.t1 | AT3G29255 | 51.475 | 746 | 313 | 5 | 2 | 745 | 6 | 704 | 0.0 | 809 |
| MS.gene053114.t1 | AT3G45130 | 53.765 | 757 | 328 | 7 | 1 | 741 | 1 | 751 | 0.0 | 804 |
| MS.gene053114.t1 | AT3G45130 | 53.765 | 757 | 328 | 7 | 1 | 741 | 1 | 751 | 0.0 | 804 |
| MS.gene053114.t1 | AT3G45130 | 53.765 | 757 | 328 | 7 | 1 | 741 | 1 | 751 | 0.0 | 803 |
| MS.gene053114.t1 | AT3G45130 | 53.765 | 757 | 328 | 7 | 1 | 741 | 1 | 751 | 0.0 | 803 |
| MS.gene053114.t1 | AT3G45130 | 53.765 | 757 | 328 | 7 | 1 | 741 | 1 | 751 | 0.0 | 803 |
| MS.gene053114.t1 | AT4G15340 | 56.085 | 567 | 231 | 4 | 1 | 549 | 1 | 567 | 0.0 | 673 |
| MS.gene053114.t1 | AT1G78480 | 48.175 | 137 | 57 | 4 | 59 | 188 | 48 | 177 | 1.52e-29 | 116 |
Find 205 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGAATCATATAACCTTTC+TGG | 0.131846 | 4.3:+89549193 | None:intergenic |
| TAATAAATACGAACCTTCTT+TGG | 0.178051 | 4.3:+89548448 | None:intergenic |
| ATCTCTTTGCGATGCTCTTT+TGG | 0.182107 | 4.3:+89551410 | None:intergenic |
| TTAATTATTGCAGAGTAAAA+AGG | 0.189557 | 4.3:-89548966 | MS.gene053114:intron |
| TTTGTTTCACTTATGGTTCT+TGG | 0.208708 | 4.3:-89548600 | MS.gene053114:CDS |
| ACATACTGCATGGGCTCTTA+TGG | 0.219444 | 4.3:-89548310 | MS.gene053114:CDS |
| CTTTGATACAAGATCTGATA+TGG | 0.229253 | 4.3:-89550500 | MS.gene053114:CDS |
| TCTTCTTCACTACCTGCTTC+TGG | 0.268680 | 4.3:+89555044 | None:intergenic |
| CAATGTCTTGTTGTCGCTTC+AGG | 0.287718 | 4.3:-89549170 | MS.gene053114:intron |
| TGGGGAGTTTGTTTCACTTA+TGG | 0.288057 | 4.3:-89548607 | MS.gene053114:CDS |
| TTGTTTGTGCTGAATAAGTA+TGG | 0.296010 | 4.3:+89555098 | None:intergenic |
| ATGGTTCATGGTATGGAAAC+TGG | 0.321747 | 4.3:-89548627 | MS.gene053114:CDS |
| ATGTGCTCGAATCCAGTTTC+TGG | 0.336554 | 4.3:+89551151 | None:intergenic |
| AATAAATACGAACCTTCTTT+GGG | 0.337567 | 4.3:+89548449 | None:intergenic |
| GCCAATCGCCTTCTTCCAAC+TGG | 0.338128 | 4.3:+89548214 | None:intergenic |
| CATACTGCATGGGCTCTTAT+GGG | 0.340268 | 4.3:-89548309 | MS.gene053114:CDS |
| CTTGATGAAATCATGTCCTT+TGG | 0.340627 | 4.3:+89549815 | None:intergenic |
| CAAAACCAGCATCCCATTCT+TGG | 0.352418 | 4.3:+89549892 | None:intergenic |
| CAGGTTACAGAGAACCCTTC+TGG | 0.354363 | 4.3:-89549461 | MS.gene053114:CDS |
| GTCAATACAATGCAGAGTTT+TGG | 0.366348 | 4.3:-89549918 | MS.gene053114:intron |
| CAGGTTCGATTTCATCATTT+AGG | 0.371564 | 4.3:+89549844 | None:intergenic |
| TCTGACATCCACAAGTAATC+TGG | 0.375987 | 4.3:+89550145 | None:intergenic |
| ATCTCTTTCTTCCTATGCCC+TGG | 0.383363 | 4.3:+89548703 | None:intergenic |
| CAGAGAGAGGATGGTGGGTG+GGG | 0.396519 | 4.3:-89548490 | MS.gene053114:CDS |
| TATTATGTATGCTTGCTTGT+TGG | 0.398640 | 4.3:-89550216 | MS.gene053114:CDS |
| ATTATGTATGCTTGCTTGTT+GGG | 0.399627 | 4.3:-89550215 | MS.gene053114:CDS |
| AGAGAGAGGATGGTGGGTGG+GGG | 0.400405 | 4.3:-89548489 | MS.gene053114:CDS |
| AACTTTAAGCAAACAATAGA+TGG | 0.401450 | 4.3:-89552852 | MS.gene053114:CDS |
| TATGCTTCATTGTAACTTCA+AGG | 0.403560 | 4.3:+89550406 | None:intergenic |
| TATATATGTATGCGAATTCT+CGG | 0.404110 | 4.3:-89551215 | MS.gene053114:CDS |
| AAGATGTGGAAGCTGAAGAT+AGG | 0.409039 | 4.3:-89555137 | MS.gene053114:CDS |
| TATGGTTCTTGGTTTGCTCT+TGG | 0.409666 | 4.3:-89548589 | MS.gene053114:CDS |
| AACCATTGGGTGTGTGGAAA+AGG | 0.412577 | 4.3:-89550352 | MS.gene053114:intron |
| TACAAACAGCCGATGGTTCA+TGG | 0.415211 | 4.3:-89548639 | MS.gene053114:CDS |
| TTTGCGAATAGCAGCGCAAT+TGG | 0.416657 | 4.3:+89548537 | None:intergenic |
| GTGTCACATATATACCTTCA+TGG | 0.418279 | 4.3:-89551124 | MS.gene053114:CDS |
| CTTGTGCTAGAGCCAGAAAC+TGG | 0.419488 | 4.3:-89551163 | MS.gene053114:CDS |
| GAGAGAGGATGGTGGGTGGG+GGG | 0.421109 | 4.3:-89548488 | MS.gene053114:CDS |
| CTTGGTGGTTTAGCAGCTGC+TGG | 0.433156 | 4.3:-89548571 | MS.gene053114:CDS |
| TGAAGAATGAAGATGGAGGA+TGG | 0.433957 | 4.3:-89551286 | MS.gene053114:intron |
| AGATACTTGGTGTATTTGAT+TGG | 0.437583 | 4.3:-89551001 | MS.gene053114:CDS |
| GGTAAATATCTCTATACATT+GGG | 0.445154 | 4.3:+89547684 | None:intergenic |
| GGTTCTTGGTTTGCTCTTGG+TGG | 0.447161 | 4.3:-89548586 | MS.gene053114:CDS |
| ACCAGAAAGGTTATATGATT+CGG | 0.449257 | 4.3:-89549194 | MS.gene053114:CDS |
| TTCTTGTAAGCATCTCCATT+TGG | 0.455730 | 4.3:+89550184 | None:intergenic |
| AGGATTGAGATGAACCTGTT+GGG | 0.456514 | 4.3:+89548191 | None:intergenic |
| TCATTTCTTCCTATGCATCC+AGG | 0.456615 | 4.3:-89550936 | MS.gene053114:intron |
| TTGTTCAAGAAGCTATATCC+AGG | 0.467138 | 4.3:-89548721 | MS.gene053114:CDS |
| AGAAGGCGATTGGCCCCAAC+AGG | 0.467418 | 4.3:-89548205 | MS.gene053114:intron |
| CTTGGTGTATTTGATTGGTT+GGG | 0.470681 | 4.3:-89550996 | MS.gene053114:CDS |
| ATGCCTATGTCTTACTTGTA+CGG | 0.475296 | 4.3:-89550760 | MS.gene053114:CDS |
| AGAATTAAACCTGGATGCAT+AGG | 0.479526 | 4.3:+89550927 | None:intergenic |
| GGGTTTAATTCATGCCGGCC+AGG | 0.479935 | 4.3:-89548289 | MS.gene053114:CDS |
| TAGAGATATTTACCCCTTGT+GGG | 0.480496 | 4.3:-89547675 | MS.gene053114:CDS |
| TTTCTATGACAACAGATTCA+AGG | 0.480723 | 4.3:-89554991 | MS.gene053114:intron |
| TCATGTCCTTTGGCAAGTGC+AGG | 0.480763 | 4.3:+89549825 | None:intergenic |
| CTATCTTTCAAGCCCAAAGA+AGG | 0.480841 | 4.3:-89548461 | MS.gene053114:intron |
| AGCGGGCCAATGGCCATCAC+TGG | 0.481173 | 4.3:+89552740 | None:intergenic |
| TCCAGTTAAATCACAGTGGA+AGG | 0.484707 | 4.3:+89547620 | None:intergenic |
| CAAACCTTCAGCGGTGCAAT+CGG | 0.485259 | 4.3:+89549361 | None:intergenic |
| ATGCATCGTCATATTTCTAA+AGG | 0.486909 | 4.3:-89549425 | MS.gene053114:CDS |
| ACTTGGTGTATTTGATTGGT+TGG | 0.489744 | 4.3:-89550997 | MS.gene053114:CDS |
| CTGCGATTTGAGCGGGCCAA+TGG | 0.490121 | 4.3:+89552730 | None:intergenic |
| GGTAGCCAAGAATGGGATGC+TGG | 0.490155 | 4.3:-89549897 | MS.gene053114:CDS |
| AATAGTCGATACTTAACCAT+TGG | 0.492356 | 4.3:-89550366 | MS.gene053114:CDS |
| GAAGAATGAAGATGGAGGAT+GGG | 0.493389 | 4.3:-89551285 | MS.gene053114:intron |
| AAAAGGGTGGTTTGGCAGCA+TGG | 0.493594 | 4.3:-89548949 | MS.gene053114:CDS |
| TTGTACGGGAAGAGATTTGT+GGG | 0.493699 | 4.3:-89550745 | MS.gene053114:CDS |
| GCAGCACGATGGAGAGGAGT+AGG | 0.495145 | 4.3:+89548255 | None:intergenic |
| TTGCACCGCTGAAGGTTTGA+AGG | 0.495837 | 4.3:-89549357 | MS.gene053114:intron |
| GTCATATTTCTAAAGGCTCA+TGG | 0.498248 | 4.3:-89549418 | MS.gene053114:CDS |
| ACAGAGAGAGGATGGTGGGT+GGG | 0.500291 | 4.3:-89548491 | MS.gene053114:CDS |
| GCATTGTCTTGACCGCCATC+AGG | 0.500377 | 4.3:+89551185 | None:intergenic |
| AAGAATGAAGATGGAGGATG+GGG | 0.503155 | 4.3:-89551284 | MS.gene053114:CDS |
| CCGAGCCACTTCTCACCCGC+TGG | 0.510505 | 4.3:-89550458 | MS.gene053114:CDS |
| CATATCAGATCTTGTATCAA+AGG | 0.511080 | 4.3:+89550501 | None:intergenic |
| CTGACATCCACAAGTAATCT+GGG | 0.512251 | 4.3:+89550146 | None:intergenic |
| TTTGATACAAGATCTGATAT+GGG | 0.514002 | 4.3:-89550499 | MS.gene053114:CDS |
| GAGTAGGGTCTCTCTCTGCC+TGG | 0.514588 | 4.3:+89548271 | None:intergenic |
| GATGGCGTGAAGATAGAAGA+TGG | 0.515640 | 4.3:-89552834 | MS.gene053114:CDS |
| AGAGGACCTGCGATTTGAGC+GGG | 0.516769 | 4.3:+89552723 | None:intergenic |
| TCAGATCTTGTATCAAAGGA+TGG | 0.518498 | 4.3:+89550505 | None:intergenic |
| CTTGTACGGGAAGAGATTTG+TGG | 0.520126 | 4.3:-89550746 | MS.gene053114:CDS |
| ATCAATTCCCAGTTGGAAGA+AGG | 0.521619 | 4.3:-89548222 | MS.gene053114:CDS |
| TTGGCAGCATGGGAGCCCGC+AGG | 0.523182 | 4.3:-89548938 | MS.gene053114:CDS |
| CCCAGTTGGAAGAAGGCGAT+TGG | 0.523228 | 4.3:-89548215 | MS.gene053114:CDS |
| CAAGGGTCCCAGATTACTTG+TGG | 0.524548 | 4.3:-89550153 | MS.gene053114:CDS |
| GGGTAAATATCTCTATACAT+TGG | 0.526077 | 4.3:+89547683 | None:intergenic |
| CCGCTGGCCTTTCAACAAGC+TGG | 0.526541 | 4.3:-89550442 | MS.gene053114:CDS |
| ACAGCCGATGGTTCATGGTA+TGG | 0.527570 | 4.3:-89548634 | MS.gene053114:CDS |
| CACTGGTTTGCAATGCTGCT+AGG | 0.530784 | 4.3:+89552757 | None:intergenic |
| ATAGTCGATACTTAACCATT+GGG | 0.531051 | 4.3:-89550365 | MS.gene053114:CDS |
| TGCCTATGTCTTACTTGTAC+GGG | 0.531091 | 4.3:-89550759 | MS.gene053114:CDS |
| AAAGGGTGGTTTGGCAGCAT+GGG | 0.531153 | 4.3:-89548948 | MS.gene053114:CDS |
| TGCAAACCAGTGATGGCCAT+TGG | 0.531457 | 4.3:-89552746 | MS.gene053114:CDS |
| CAGATCTTGTATCAAAGGAT+GGG | 0.531784 | 4.3:+89550506 | None:intergenic |
| AACCACTCTTGAGCTCCTGC+GGG | 0.532584 | 4.3:+89548923 | None:intergenic |
| CAGCTTGTTGAAAGGCCAGC+GGG | 0.533343 | 4.3:+89550443 | None:intergenic |
| AGGGTCTCTCTCTGCCTGGC+CGG | 0.534032 | 4.3:+89548275 | None:intergenic |
| TGTCACATATATACCTTCAT+GGG | 0.534237 | 4.3:-89551123 | MS.gene053114:CDS |
| TAACCACTCTTGAGCTCCTG+CGG | 0.534900 | 4.3:+89548922 | None:intergenic |
| CATTGGCCCGCTCAAATCGC+AGG | 0.535192 | 4.3:-89552729 | MS.gene053114:CDS |
| ATGTTGCCTCCAGAGATTGT+GGG | 0.536709 | 4.3:-89549229 | MS.gene053114:CDS |
| CATGAATATGTTGAGTGCAC+TGG | 0.536807 | 4.3:-89548766 | MS.gene053114:CDS |
| CTTATGGGTTTAATTCATGC+CGG | 0.540134 | 4.3:-89548294 | MS.gene053114:CDS |
| TGATTTCATCAAGAAATCTC+AGG | 0.542468 | 4.3:-89549805 | MS.gene053114:intron |
| GATTTCATCATTTAGGTTAG+CGG | 0.544741 | 4.3:+89549851 | None:intergenic |
| TATTTATGGCAGGAAATCAC+AGG | 0.544762 | 4.3:-89547737 | MS.gene053114:intron |
| ATAGAGATATTTACCCCTTG+TGG | 0.545304 | 4.3:-89547676 | MS.gene053114:CDS |
| CCTCTCTCTGTGTTGTGAGA+AGG | 0.545702 | 4.3:+89548503 | None:intergenic |
| AGCGGCAAGCAAAGCTTGAA+CGG | 0.546876 | 4.3:+89549869 | None:intergenic |
| TGGTTCATGGTATGGAAACT+GGG | 0.547996 | 4.3:-89548626 | MS.gene053114:CDS |
| TGGAAGCTGAAGATAGGAGA+GGG | 0.548862 | 4.3:-89555131 | MS.gene053114:CDS |
| GAAGGAAGGATCCAAAACTC+AGG | 0.548916 | 4.3:+89550957 | None:intergenic |
| TCCATGGTCTTGATCGGAGA+AGG | 0.549309 | 4.3:+89549394 | None:intergenic |
| TACTTGTGGATGTCAGAAGA+TGG | 0.551571 | 4.3:-89550139 | MS.gene053114:CDS |
| TTCAATGAATCGAACTGCCT+CGG | 0.553806 | 4.3:+89548666 | None:intergenic |
| TGGAACCCGTCTACGATACT+CGG | 0.556212 | 4.3:+89547646 | None:intergenic |
| AATGTTGCCTCCAGAGATTG+TGG | 0.556294 | 4.3:-89549230 | MS.gene053114:CDS |
| TCTCCGATCAAGACCATGGA+TGG | 0.556637 | 4.3:-89549391 | MS.gene053114:CDS |
| ATTTAATTGCAGCTAAAATG+TGG | 0.557315 | 4.3:-89550804 | MS.gene053114:intron |
| TTTCTGACCAGCTTGTTGAA+AGG | 0.558711 | 4.3:+89550435 | None:intergenic |
| ATGCTTCATTGTAACTTCAA+GGG | 0.560576 | 4.3:+89550407 | None:intergenic |
| AATCGGAAACTTGCCATCCA+TGG | 0.561165 | 4.3:+89549378 | None:intergenic |
| ATGATTTGCCTATAGATACT+TGG | 0.562224 | 4.3:-89551014 | MS.gene053114:intron |
| GAATACGGAATCAAGATGTC+CGG | 0.564924 | 4.3:+89551433 | None:intergenic |
| TTGCCATCCATGGTCTTGAT+CGG | 0.566795 | 4.3:+89549388 | None:intergenic |
| ATACTCTTAAAATCTCCAGA+AGG | 0.567112 | 4.3:+89549446 | None:intergenic |
| CCAATGTTGTACATACTGCA+TGG | 0.568294 | 4.3:-89548320 | MS.gene053114:CDS |
| ATTGCTCATCAATTCCCAGT+TGG | 0.571873 | 4.3:-89548229 | MS.gene053114:CDS |
| GGATGCATAGGAAGAAATGA+AGG | 0.572300 | 4.3:+89550939 | None:intergenic |
| GTTTCCGATTGCACCGCTGA+AGG | 0.573268 | 4.3:-89549365 | MS.gene053114:CDS |
| ATACTTAACCATTGGGTGTG+TGG | 0.573310 | 4.3:-89550358 | MS.gene053114:CDS |
| GCAGCATTGCAAACCAGTGA+TGG | 0.573625 | 4.3:-89552753 | MS.gene053114:CDS |
| AAAGGCCAGCGGGTGAGAAG+TGG | 0.574573 | 4.3:+89550453 | None:intergenic |
| TGGGAGTATGATCCAGAAGC+AGG | 0.576042 | 4.3:-89555056 | MS.gene053114:CDS |
| AGAAGCTATATCCAGGGCAT+AGG | 0.579101 | 4.3:-89548714 | MS.gene053114:CDS |
| AAGGAAGGATCCAAAACTCA+GGG | 0.579130 | 4.3:+89550958 | None:intergenic |
| CTCACAACACAGAGAGAGGA+TGG | 0.580995 | 4.3:-89548499 | MS.gene053114:CDS |
| GTGGAAGCTGAAGATAGGAG+AGG | 0.581318 | 4.3:-89555132 | MS.gene053114:CDS |
| CCAGCGGGTGAGAAGTGGCT+CGG | 0.581720 | 4.3:+89550458 | None:intergenic |
| CAATGTTGTACATACTGCAT+GGG | 0.582226 | 4.3:-89548319 | MS.gene053114:CDS |
| CACAGAGAGAGGATGGTGGG+TGG | 0.585302 | 4.3:-89548492 | MS.gene053114:CDS |
| CCAATCGCCTTCTTCCAACT+GGG | 0.588505 | 4.3:+89548215 | None:intergenic |
| TAAATCACAGTGGAAGGCAA+TGG | 0.589251 | 4.3:+89547626 | None:intergenic |
| CTCTAGCCGAGTATCGTAGA+CGG | 0.589327 | 4.3:-89547652 | MS.gene053114:CDS |
| AGCCCGCAGGAGCTCAAGAG+TGG | 0.590345 | 4.3:-89548925 | MS.gene053114:CDS |
| TGACTCTCACCTTTGCACAT+AGG | 0.591496 | 4.3:+89550638 | None:intergenic |
| GACTATTCTCATCCTCGTAG+TGG | 0.592078 | 4.3:+89550382 | None:intergenic |
| AGATCTTGTATCAAAGGATG+GGG | 0.592595 | 4.3:+89550507 | None:intergenic |
| AATGTGGTGTTATTGTCGAT+TGG | 0.592848 | 4.3:-89550788 | MS.gene053114:CDS |
| ATCGAACCTGCACTTGCCAA+AGG | 0.594240 | 4.3:-89549831 | MS.gene053114:CDS |
| CCTTCTCACAACACAGAGAG+AGG | 0.594275 | 4.3:-89548503 | MS.gene053114:CDS |
| TACTCTTAAAATCTCCAGAA+GGG | 0.594668 | 4.3:+89549447 | None:intergenic |
| CTATACCTTCAAACCTTCAG+CGG | 0.599781 | 4.3:+89549352 | None:intergenic |
| GGATTGAGATGAACCTGTTG+GGG | 0.601251 | 4.3:+89548192 | None:intergenic |
| CAACACAGAGAGAGGATGGT+GGG | 0.605076 | 4.3:-89548495 | MS.gene053114:CDS |
| ACCTTCTCCGATCAAGACCA+TGG | 0.607623 | 4.3:-89549395 | MS.gene053114:CDS |
| GTTAAGTGCAGTGCAAAACA+TGG | 0.609215 | 4.3:+89551238 | None:intergenic |
| CAGCACGATGGAGAGGAGTA+GGG | 0.609931 | 4.3:+89548256 | None:intergenic |
| TGTTCAAGAAGCTATATCCA+GGG | 0.610050 | 4.3:-89548720 | MS.gene053114:CDS |
| CCATGCAGTATGTACAACAT+TGG | 0.611660 | 4.3:+89548320 | None:intergenic |
| CTTACAAGAAGCATCTTGCA+AGG | 0.611846 | 4.3:-89550171 | MS.gene053114:CDS |
| TGTATGCGAATTCTCGGAGA+AGG | 0.611987 | 4.3:-89551209 | MS.gene053114:CDS |
| ATGTATGCTTGCTTGTTGGG+TGG | 0.616625 | 4.3:-89550212 | MS.gene053114:CDS |
| CAGATATATGTACCTCTCGA+AGG | 0.616858 | 4.3:-89548351 | MS.gene053114:CDS |
| TGTTGCCTCCAGAGATTGTG+GGG | 0.619714 | 4.3:-89549228 | MS.gene053114:CDS |
| AGAAACTGGATTCGAGCACA+TGG | 0.622003 | 4.3:-89551149 | MS.gene053114:CDS |
| AGGATGGGGACTACACATTG+AGG | 0.622564 | 4.3:-89551270 | MS.gene053114:CDS |
| ATCACGTCACCTATGTGCAA+AGG | 0.624609 | 4.3:-89550647 | MS.gene053114:intron |
| TGTTGGGTGGAAGATCCAAA+TGG | 0.626156 | 4.3:-89550199 | MS.gene053114:CDS |
| GGATGGGGACTACACATTGA+GGG | 0.630262 | 4.3:-89551269 | MS.gene053114:CDS |
| TGTAAGATGAGTGGTGTGAT+CGG | 0.631563 | 4.3:+89550721 | None:intergenic |
| TCTAGCCGAGTATCGTAGAC+GGG | 0.631575 | 4.3:-89547651 | MS.gene053114:CDS |
| TTGGATCGGCTTCCTTCGAG+AGG | 0.631858 | 4.3:+89548339 | None:intergenic |
| TCTCTCAACTGTAAGATGAG+TGG | 0.632296 | 4.3:+89550712 | None:intergenic |
| GGGAAAAGATGGAACCAGAA+AGG | 0.633031 | 4.3:-89549207 | MS.gene053114:CDS |
| GCAACGGCAACATTGAGAAG+AGG | 0.633052 | 4.3:-89552789 | MS.gene053114:CDS |
| GCATAGGAAGAAATGAAGGA+AGG | 0.633205 | 4.3:+89550943 | None:intergenic |
| ATTCTCGGAGAAGGACCTGA+TGG | 0.634214 | 4.3:-89551200 | MS.gene053114:CDS |
| CAGTATGTACAACATTGGAT+CGG | 0.635228 | 4.3:+89548325 | None:intergenic |
| TTCCCGTACAAGTAAGACAT+AGG | 0.635237 | 4.3:+89550757 | None:intergenic |
| GTTTCCATACCATGAACCAT+CGG | 0.636194 | 4.3:+89548630 | None:intergenic |
| ATACTCGGCTAGAGCCCACA+AGG | 0.640192 | 4.3:+89547661 | None:intergenic |
| TAGAGGACCTGCGATTTGAG+CGG | 0.649619 | 4.3:+89552722 | None:intergenic |
| GATAACATATGAGAAAGCAA+CGG | 0.654676 | 4.3:-89552805 | MS.gene053114:CDS |
| AGGAAGGATCCAAAACTCAG+GGG | 0.654693 | 4.3:+89550959 | None:intergenic |
| GATAGAGAATTTCATCTCCG+AGG | 0.658691 | 4.3:-89548683 | MS.gene053114:CDS |
| TGGTTTGCAATGCTGCTAGG+TGG | 0.658851 | 4.3:+89552760 | None:intergenic |
| TAGTAAGTACTCACCAAGGG+AGG | 0.660175 | 4.3:+89552690 | None:intergenic |
| AGAAGATGGAATGACCATGC+AGG | 0.662853 | 4.3:-89550125 | MS.gene053114:intron |
| TTACAAGAAGCATCTTGCAA+GGG | 0.667050 | 4.3:-89550170 | MS.gene053114:CDS |
| GAAGATATACAAACAGCCGA+TGG | 0.667706 | 4.3:-89548646 | MS.gene053114:CDS |
| ACAACACAGAGAGAGGATGG+TGG | 0.668505 | 4.3:-89548496 | MS.gene053114:CDS |
| GTCACATATATACCTTCATG+GGG | 0.669911 | 4.3:-89551122 | MS.gene053114:CDS |
| CTCGGAGAAGGACCTGATGG+CGG | 0.670908 | 4.3:-89551197 | MS.gene053114:CDS |
| GGAAGGATCCAAAACTCAGG+GGG | 0.672851 | 4.3:+89550960 | None:intergenic |
| CCAGCTTGTTGAAAGGCCAG+CGG | 0.681628 | 4.3:+89550442 | None:intergenic |
| GGTTCATGGTATGGAAACTG+GGG | 0.686882 | 4.3:-89548625 | MS.gene053114:CDS |
| TGTTTGTGCTGAATAAGTAT+GGG | 0.691594 | 4.3:+89555099 | None:intergenic |
| TACTCGGCTAGAGCCCACAA+GGG | 0.715735 | 4.3:+89547662 | None:intergenic |
| AACTGGATTCGAGCACATGG+TGG | 0.726743 | 4.3:-89551146 | MS.gene053114:CDS |
| ACTCGGCTAGAGCCCACAAG+GGG | 0.728980 | 4.3:+89547663 | None:intergenic |
| GTTGCCTCCAGAGATTGTGG+GGG | 0.736124 | 4.3:-89549227 | MS.gene053114:CDS |
| AATGAAGCATATCCACTACG+AGG | 0.801868 | 4.3:-89550394 | MS.gene053114:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89547625 | 89555156 | 89547625 | ID=MS.gene053114 |
| chr4.3 | mRNA | 89547625 | 89555156 | 89547625 | ID=MS.gene053114.t1;Parent=MS.gene053114 |
| chr4.3 | exon | 89554992 | 89555156 | 89554992 | ID=MS.gene053114.t1.exon1;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89554992 | 89555156 | 89554992 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89552704 | 89552889 | 89552704 | ID=MS.gene053114.t1.exon2;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89552704 | 89552889 | 89552704 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89551385 | 89551474 | 89551385 | ID=MS.gene053114.t1.exon3;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89551385 | 89551474 | 89551385 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89551106 | 89551303 | 89551106 | ID=MS.gene053114.t1.exon4;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89551106 | 89551303 | 89551106 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89550937 | 89551021 | 89550937 | ID=MS.gene053114.t1.exon5;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89550937 | 89551021 | 89550937 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89550648 | 89550814 | 89550648 | ID=MS.gene053114.t1.exon6;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89550648 | 89550814 | 89550648 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89550353 | 89550544 | 89550353 | ID=MS.gene053114.t1.exon7;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89550353 | 89550544 | 89550353 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89550126 | 89550239 | 89550126 | ID=MS.gene053114.t1.exon8;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89550126 | 89550239 | 89550126 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89549806 | 89549925 | 89549806 | ID=MS.gene053114.t1.exon9;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89549806 | 89549925 | 89549806 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89549358 | 89549480 | 89549358 | ID=MS.gene053114.t1.exon10;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89549358 | 89549480 | 89549358 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89549171 | 89549269 | 89549171 | ID=MS.gene053114.t1.exon11;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89549171 | 89549269 | 89549171 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89548919 | 89548975 | 89548919 | ID=MS.gene053114.t1.exon12;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89548919 | 89548975 | 89548919 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89548462 | 89548830 | 89548462 | ID=MS.gene053114.t1.exon13;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89548462 | 89548830 | 89548462 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89548206 | 89548370 | 89548206 | ID=MS.gene053114.t1.exon14;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89548206 | 89548370 | 89548206 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| chr4.3 | exon | 89547625 | 89547747 | 89547625 | ID=MS.gene053114.t1.exon15;Parent=MS.gene053114.t1 |
| chr4.3 | CDS | 89547625 | 89547747 | 89547625 | ID=cds.MS.gene053114.t1;Parent=MS.gene053114.t1 |
| Gene Sequence |
| Protein sequence |