Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87166.t1 | XP_024625732.1 | 92.8 | 769 | 47 | 1 | 1 | 761 | 1 | 769 | 0.00E+00 | 1491.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87166.t1 | Q9LRH8 | 83.0 | 758 | 120 | 2 | 1 | 750 | 1 | 757 | 0.0e+00 | 1365.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87166.t1 | A0A396GXN7 | 92.8 | 769 | 47 | 1 | 1 | 761 | 1 | 769 | 0.0e+00 | 1491.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024711 | MS.gene87166 | PPI |
| MS.gene87166 | MS.gene034308 | PPI |
| MS.gene053114 | MS.gene87166 | PPI |
| MS.gene87166 | MS.gene07774 | PPI |
| MS.gene50096 | MS.gene87166 | PPI |
| MS.gene87166 | MS.gene21690 | PPI |
| MS.gene87166 | MS.gene034307 | PPI |
| MS.gene37340 | MS.gene87166 | PPI |
| MS.gene011204 | MS.gene87166 | PPI |
| MS.gene98129 | MS.gene87166 | PPI |
| MS.gene87166 | MS.gene21938 | PPI |
| MS.gene22278 | MS.gene87166 | PPI |
| MS.gene87166 | MS.gene053114 | PPI |
| MS.gene98126 | MS.gene87166 | PPI |
| MS.gene87166 | MS.gene000594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87166.t1 | MTR_4g005190 | 84.535 | 763 | 109 | 2 | 1 | 755 | 1 | 762 | 0.0 | 1368 |
| MS.gene87166.t1 | MTR_7g034535 | 92.308 | 702 | 46 | 1 | 68 | 761 | 3 | 704 | 0.0 | 1368 |
| MS.gene87166.t1 | MTR_0013s0230 | 82.700 | 763 | 124 | 1 | 1 | 755 | 1 | 763 | 0.0 | 1347 |
| MS.gene87166.t1 | MTR_4g005270 | 81.961 | 765 | 129 | 2 | 1 | 757 | 1 | 764 | 0.0 | 1340 |
| MS.gene87166.t1 | MTR_8g016975 | 77.195 | 763 | 165 | 2 | 1 | 755 | 1 | 762 | 0.0 | 1269 |
| MS.gene87166.t1 | MTR_8g016960 | 74.738 | 764 | 177 | 3 | 1 | 755 | 1 | 757 | 0.0 | 1228 |
| MS.gene87166.t1 | MTR_4g005190 | 85.007 | 667 | 92 | 1 | 1 | 659 | 1 | 667 | 0.0 | 1213 |
| MS.gene87166.t1 | MTR_8g017020 | 71.560 | 763 | 174 | 4 | 1 | 755 | 1 | 728 | 0.0 | 1159 |
| MS.gene87166.t1 | MTR_3g436160 | 79.407 | 675 | 126 | 3 | 84 | 750 | 27 | 696 | 0.0 | 1110 |
| MS.gene87166.t1 | MTR_6g093180 | 58.476 | 761 | 304 | 4 | 1 | 753 | 1 | 757 | 0.0 | 963 |
| MS.gene87166.t1 | MTR_6g034985 | 56.899 | 761 | 316 | 4 | 1 | 753 | 1 | 757 | 0.0 | 933 |
| MS.gene87166.t1 | MTR_5g008810 | 57.332 | 757 | 310 | 6 | 1 | 748 | 1 | 753 | 0.0 | 900 |
| MS.gene87166.t1 | MTR_6g035010 | 53.846 | 754 | 336 | 4 | 1 | 746 | 1 | 750 | 0.0 | 865 |
| MS.gene87166.t1 | MTR_7g062020 | 51.818 | 770 | 348 | 7 | 1 | 750 | 1 | 767 | 0.0 | 813 |
| MS.gene87166.t1 | MTR_6g093100 | 52.185 | 778 | 341 | 11 | 1 | 750 | 1 | 775 | 0.0 | 811 |
| MS.gene87166.t1 | MTR_6g088140 | 52.556 | 763 | 327 | 10 | 1 | 750 | 1 | 741 | 0.0 | 810 |
| MS.gene87166.t1 | MTR_6g088140 | 51.929 | 674 | 291 | 8 | 1 | 662 | 1 | 653 | 0.0 | 713 |
| MS.gene87166.t1 | MTR_8g016940 | 66.421 | 271 | 84 | 2 | 491 | 755 | 2 | 271 | 1.97e-123 | 370 |
| MS.gene87166.t1 | MTR_8g017040 | 85.075 | 67 | 10 | 0 | 1 | 67 | 1 | 67 | 1.06e-34 | 128 |
| MS.gene87166.t1 | MTR_3g436170 | 85.294 | 68 | 10 | 0 | 1 | 68 | 1 | 68 | 2.27e-34 | 126 |
| MS.gene87166.t1 | MTR_8g016570 | 58.108 | 74 | 26 | 1 | 688 | 756 | 28 | 101 | 3.20e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87166.t1 | AT1G78955 | 69.571 | 769 | 224 | 3 | 1 | 760 | 1 | 768 | 0.0 | 1149 |
| MS.gene87166.t1 | AT1G78950 | 71.146 | 759 | 209 | 3 | 1 | 750 | 10 | 767 | 0.0 | 1138 |
| MS.gene87166.t1 | AT1G78950 | 71.146 | 759 | 209 | 3 | 1 | 750 | 1 | 758 | 0.0 | 1137 |
| MS.gene87166.t1 | AT1G78960 | 68.079 | 755 | 231 | 3 | 1 | 746 | 1 | 754 | 0.0 | 1121 |
| MS.gene87166.t1 | AT1G78960 | 68.079 | 755 | 231 | 3 | 1 | 746 | 1 | 754 | 0.0 | 1121 |
| MS.gene87166.t1 | AT1G78960 | 68.079 | 755 | 231 | 3 | 1 | 746 | 1 | 754 | 0.0 | 1121 |
| MS.gene87166.t1 | AT1G66960 | 66.093 | 755 | 246 | 3 | 1 | 746 | 1 | 754 | 0.0 | 1088 |
| MS.gene87166.t1 | AT1G66960 | 66.093 | 755 | 246 | 3 | 1 | 746 | 1 | 754 | 0.0 | 1088 |
| MS.gene87166.t1 | AT1G66960 | 66.093 | 755 | 246 | 3 | 1 | 746 | 1 | 754 | 0.0 | 1088 |
| MS.gene87166.t1 | AT1G66960 | 66.093 | 755 | 246 | 3 | 1 | 746 | 10 | 763 | 0.0 | 1088 |
| MS.gene87166.t1 | AT1G78960 | 67.956 | 724 | 222 | 3 | 1 | 715 | 1 | 723 | 0.0 | 1072 |
| MS.gene87166.t1 | AT1G78970 | 66.843 | 757 | 238 | 4 | 1 | 748 | 1 | 753 | 0.0 | 1069 |
| MS.gene87166.t1 | AT1G78970 | 66.843 | 757 | 238 | 4 | 1 | 748 | 1 | 753 | 0.0 | 1069 |
| MS.gene87166.t1 | AT1G78970 | 66.843 | 757 | 238 | 4 | 1 | 748 | 1 | 753 | 0.0 | 1069 |
| MS.gene87166.t1 | AT1G78955 | 69.986 | 703 | 202 | 2 | 66 | 760 | 2 | 703 | 0.0 | 1055 |
| MS.gene87166.t1 | AT1G78955 | 70.669 | 658 | 184 | 2 | 66 | 715 | 2 | 658 | 0.0 | 998 |
| MS.gene87166.t1 | AT5G36150 | 55.863 | 759 | 325 | 3 | 1 | 750 | 1 | 758 | 0.0 | 934 |
| MS.gene87166.t1 | AT5G36150 | 55.863 | 759 | 325 | 3 | 1 | 750 | 1 | 758 | 0.0 | 934 |
| MS.gene87166.t1 | AT1G78500 | 57.757 | 767 | 306 | 6 | 1 | 750 | 1 | 766 | 0.0 | 931 |
| MS.gene87166.t1 | AT1G78500 | 57.757 | 767 | 306 | 6 | 1 | 750 | 1 | 766 | 0.0 | 931 |
| MS.gene87166.t1 | AT1G78955 | 70.744 | 605 | 169 | 1 | 66 | 662 | 2 | 606 | 0.0 | 920 |
| MS.gene87166.t1 | AT5G48010 | 55.859 | 768 | 318 | 7 | 1 | 749 | 1 | 766 | 0.0 | 918 |
| MS.gene87166.t1 | AT1G78960 | 69.040 | 604 | 178 | 2 | 151 | 746 | 1 | 603 | 0.0 | 918 |
| MS.gene87166.t1 | AT4G15370 | 56.258 | 759 | 311 | 6 | 1 | 746 | 1 | 751 | 0.0 | 918 |
| MS.gene87166.t1 | AT4G15340 | 56.845 | 767 | 312 | 6 | 1 | 749 | 1 | 766 | 0.0 | 917 |
| MS.gene87166.t1 | AT4G15370 | 56.037 | 762 | 311 | 7 | 1 | 746 | 1 | 754 | 0.0 | 914 |
| MS.gene87166.t1 | AT2G07050 | 56.522 | 759 | 317 | 6 | 1 | 750 | 1 | 755 | 0.0 | 910 |
| MS.gene87166.t1 | AT5G42600 | 55.395 | 760 | 327 | 5 | 1 | 750 | 1 | 758 | 0.0 | 900 |
| MS.gene87166.t1 | AT5G48010 | 55.078 | 768 | 316 | 8 | 1 | 749 | 1 | 758 | 0.0 | 899 |
| MS.gene87166.t1 | AT1G78955 | 71.044 | 594 | 163 | 2 | 175 | 760 | 1 | 593 | 0.0 | 898 |
| MS.gene87166.t1 | AT2G07050 | 57.380 | 664 | 271 | 5 | 96 | 750 | 4 | 664 | 0.0 | 817 |
| MS.gene87166.t1 | AT3G45130 | 53.430 | 758 | 334 | 8 | 1 | 746 | 1 | 751 | 0.0 | 788 |
| MS.gene87166.t1 | AT3G45130 | 53.430 | 758 | 334 | 8 | 1 | 746 | 1 | 751 | 0.0 | 788 |
| MS.gene87166.t1 | AT3G45130 | 53.430 | 758 | 334 | 8 | 1 | 746 | 1 | 751 | 0.0 | 788 |
| MS.gene87166.t1 | AT3G45130 | 53.430 | 758 | 334 | 8 | 1 | 746 | 1 | 751 | 0.0 | 787 |
| MS.gene87166.t1 | AT3G45130 | 53.430 | 758 | 334 | 8 | 1 | 746 | 1 | 751 | 0.0 | 787 |
| MS.gene87166.t1 | AT3G29255 | 49.144 | 759 | 316 | 7 | 2 | 750 | 6 | 704 | 0.0 | 772 |
| MS.gene87166.t1 | AT4G15340 | 56.437 | 567 | 233 | 4 | 1 | 553 | 1 | 567 | 0.0 | 682 |
| MS.gene87166.t1 | AT1G78480 | 46.715 | 137 | 59 | 4 | 71 | 200 | 48 | 177 | 2.93e-27 | 110 |
Find 171 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTCTTGCAGGGTAAAA+AGG | 0.192507 | 7.4:+65026684 | MS.gene87166:intron |
| TGGGGAATTTGCTTCATTTA+TGG | 0.192754 | 7.4:+65027055 | MS.gene87166:CDS |
| CTTTGATACAAAATCTGATT+TGG | 0.226285 | 7.4:+65015817 | MS.gene87166:CDS |
| ACAAACTTAATTGAAGAAAT+TGG | 0.238035 | 7.4:+65025882 | MS.gene87166:CDS |
| TCCTCCAAAGTACCTGCTTT+TGG | 0.246773 | 7.4:-64999289 | None:intergenic |
| AAATTTAAACAAACGATTAC+TGG | 0.282250 | 7.4:+65013696 | MS.gene87166:CDS |
| TATACATGCATGAGAATTCT+TGG | 0.312364 | 7.4:+65015040 | MS.gene87166:CDS |
| TCGTTGGCCTTTCAACAAAT+TGG | 0.314876 | 7.4:+65015875 | MS.gene87166:CDS |
| CTTTATGTATGCTTGCTTGT+TGG | 0.322697 | 7.4:+65016090 | MS.gene87166:CDS |
| CAAACCCAGCATCCCATTCT+TGG | 0.340109 | 7.4:-65025839 | None:intergenic |
| ATAACTAAAGCTTGAATTGC+TGG | 0.340316 | 7.4:-65026920 | None:intergenic |
| GCCAATCACCCTCTTCCAAC+TGG | 0.347244 | 7.4:-65027802 | None:intergenic |
| TTTATGTATGCTTGCTTGTT+GGG | 0.349049 | 7.4:+65016091 | MS.gene87166:CDS |
| ATGTCTATGTCTTACTTGTA+TGG | 0.352358 | 7.4:+65015584 | MS.gene87166:CDS |
| TTTGATACAAAATCTGATTT+GGG | 0.357240 | 7.4:+65015818 | MS.gene87166:CDS |
| TTTGTACAACATTTGATTGT+TGG | 0.359225 | 7.4:-65027345 | None:intergenic |
| TGGTTCATGGTATGGAAGTT+GGG | 0.361550 | 7.4:+65027036 | MS.gene87166:CDS |
| ATCTCTTTCTTCCTATGCTC+TGG | 0.363167 | 7.4:-65026959 | None:intergenic |
| CATTACGGGACATCTTGATT+TGG | 0.363637 | 7.4:+65014762 | MS.gene87166:CDS |
| CTTGGTGTATTTGATTGGTC+TGG | 0.373298 | 7.4:+65015393 | MS.gene87166:CDS |
| CCCAGTTGGAAGAGGGTGAT+TGG | 0.374695 | 7.4:+65027801 | MS.gene87166:CDS |
| ACTTTGTAGGAAGACAAATA+TGG | 0.380103 | 7.4:+64999257 | MS.gene87166:CDS |
| ATACATACAATGTAGAGTTT+TGG | 0.383069 | 7.4:+65025813 | MS.gene87166:intron |
| TTAATTAACATGAACCTGTT+GGG | 0.387219 | 7.4:-65027825 | None:intergenic |
| TATGTTCCATTGTCTTCCAC+TGG | 0.389336 | 7.4:+65028297 | MS.gene87166:CDS |
| TTCAGCACAAACAACTTTGT+AGG | 0.391304 | 7.4:+64999244 | MS.gene87166:CDS |
| CAAGGGTCCCGGATTATTTG+TGG | 0.391958 | 7.4:+65016153 | MS.gene87166:CDS |
| ACAAAGAGAGGATGGTGGTT+GGG | 0.397928 | 7.4:+65027171 | MS.gene87166:CDS |
| TATTTGTGGGTTTCAGAAGA+TGG | 0.397952 | 7.4:+65016167 | MS.gene87166:CDS |
| TATGCTTCATTGTTACTTGA+AGG | 0.399431 | 7.4:-65015911 | None:intergenic |
| TTTACGAATCGCAACAGAAT+TGG | 0.400070 | 7.4:-65027125 | None:intergenic |
| CTTGTGCAAGAGCAAGAAAC+TGG | 0.401454 | 7.4:+65015092 | MS.gene87166:CDS |
| AATTTCTTCAATTAAGTTTG+TGG | 0.401928 | 7.4:-65025880 | None:intergenic |
| ATGGTTCATGGTATGGAAGT+TGG | 0.403489 | 7.4:+65027035 | MS.gene87166:CDS |
| GTGTAACACATATACCTTCA+TGG | 0.413324 | 7.4:+65015131 | MS.gene87166:CDS |
| TTTCTTTATTTGCAGATACT+TGG | 0.413841 | 7.4:+65015375 | MS.gene87166:intron |
| AGCTATGTGGTGACCTCCTT+TGG | 0.416081 | 7.4:+64999368 | MS.gene87166:CDS |
| ATCTCTTTGCGATGCTCTTG+TGG | 0.416931 | 7.4:-65014790 | None:intergenic |
| TTGTTTGTGCTGAATATGTA+TGG | 0.427095 | 7.4:-64999235 | None:intergenic |
| TCGTTACATATATTGTCATC+AGG | 0.428039 | 7.4:+65014816 | MS.gene87166:CDS |
| AACCATGGGGTCTGTAGAAA+AGG | 0.430084 | 7.4:+65015965 | MS.gene87166:CDS |
| AGATACTTGGTGTATTTGAT+TGG | 0.435966 | 7.4:+65015388 | MS.gene87166:intron |
| TTTCATTTGAAGAATGAAGA+TGG | 0.439107 | 7.4:+65014962 | MS.gene87166:intron |
| CTCATGAGTTTAATTTATGC+TGG | 0.439245 | 7.4:+65027379 | MS.gene87166:CDS |
| GGTAGCCAAGAATGGGATGC+TGG | 0.444230 | 7.4:+65025834 | MS.gene87166:CDS |
| CTTGTATGGGAAGAGGTTTG+TGG | 0.445700 | 7.4:+65015598 | MS.gene87166:CDS |
| TCTGAAACCCACAAATAATC+CGG | 0.450164 | 7.4:-65016161 | None:intergenic |
| CACATAGCTTGACTTTAAAA+CGG | 0.462109 | 7.4:-64999354 | None:intergenic |
| CAAAGAGAGGATGGTGGTTG+GGG | 0.465183 | 7.4:+65027172 | MS.gene87166:CDS |
| AGAGATTGTGGGTGAAAAGA+TGG | 0.466261 | 7.4:+65026478 | MS.gene87166:CDS |
| TGTAACACATATACCTTCAT+GGG | 0.466293 | 7.4:+65015132 | MS.gene87166:CDS |
| AAAAGGGTGGTATGCCATCA+TGG | 0.467970 | 7.4:+65026701 | MS.gene87166:CDS |
| CATTGGCCTGCTCAAATAGC+TGG | 0.468333 | 7.4:+65013819 | MS.gene87166:CDS |
| CTTAATGAAATCATGTCCTC+TGG | 0.468515 | 7.4:-65025916 | None:intergenic |
| AAAGATGATGGTTCATGGTA+TGG | 0.471672 | 7.4:+65027028 | MS.gene87166:CDS |
| TGATCCAAAAGCAGGTACTT+TGG | 0.472154 | 7.4:+64999285 | MS.gene87166:CDS |
| AAGGGTCCCGGATTATTTGT+GGG | 0.472274 | 7.4:+65016154 | MS.gene87166:CDS |
| AACCATTCTTGAGCTCGTGC+TGG | 0.472657 | 7.4:-65026727 | None:intergenic |
| GAGTTTAATTTATGCTGGCC+AGG | 0.472869 | 7.4:+65027384 | MS.gene87166:CDS |
| TTGTATGGGAAGAGGTTTGT+GGG | 0.474929 | 7.4:+65015599 | MS.gene87166:CDS |
| AGAGGGTGATTGGCCCCAAC+AGG | 0.478137 | 7.4:+65027811 | MS.gene87166:CDS |
| GCTCGTGCTGGCTCCCATGA+TGG | 0.479203 | 7.4:-65026715 | None:intergenic |
| GAAGGAAGGATCCAAAACTC+TGG | 0.482022 | 7.4:-65015432 | None:intergenic |
| ATGCATCGTCATATTTCTAA+AGG | 0.486909 | 7.4:+65026273 | MS.gene87166:CDS |
| TCTCTTTGCGATGCTCTTGT+GGG | 0.487028 | 7.4:-65014789 | None:intergenic |
| TCTCTTACCAATTTGTTGAA+AGG | 0.487619 | 7.4:-65015882 | None:intergenic |
| CTTGGTGGATTAGCAGCTGC+TGG | 0.492984 | 7.4:+65027091 | MS.gene87166:CDS |
| TATTTATTGTAGGGAATCAC+AGG | 0.496137 | 7.4:+65028192 | MS.gene87166:intron |
| TTCTTGAAAGCATCTCCATC+TGG | 0.499654 | 7.4:-65016122 | None:intergenic |
| ATGTTCCATTGTCTTCCACT+GGG | 0.501307 | 7.4:+65028298 | MS.gene87166:CDS |
| CATCAATTCCCAGTTGGAAG+AGG | 0.502190 | 7.4:+65027793 | MS.gene87166:CDS |
| TGTCTTACTTGTATGGGAAG+AGG | 0.506519 | 7.4:+65015591 | MS.gene87166:CDS |
| CAGGTTAGGGACAACCCATC+AGG | 0.506799 | 7.4:+65026237 | MS.gene87166:intron |
| CACCTTTGCACATAGGTGAC+GGG | 0.508050 | 7.4:-65015699 | None:intergenic |
| TGATTTCATTAAGAAATCTC+AGG | 0.511905 | 7.4:+65025926 | MS.gene87166:CDS |
| ATGCTTCATTGTTACTTGAA+GGG | 0.514618 | 7.4:-65015910 | None:intergenic |
| CTTTGTAGGAAGACAAATAT+GGG | 0.516841 | 7.4:+64999258 | MS.gene87166:CDS |
| GTGAGCCACTTCTCACTCGT+TGG | 0.517487 | 7.4:+65015859 | MS.gene87166:CDS |
| AAGGAAGGATCCAAAACTCT+GGG | 0.518131 | 7.4:-65015431 | None:intergenic |
| GAAGAATGAAGATGGAGGGT+GGG | 0.525988 | 7.4:+65014970 | MS.gene87166:intron |
| ACTCAGCTAAAGCCCACAAT+GGG | 0.529293 | 7.4:-65028266 | None:intergenic |
| GAAGCATCTTGCAAGGGTCC+CGG | 0.529703 | 7.4:+65016142 | MS.gene87166:CDS |
| CAAATGTTGTACAAACTGCA+TGG | 0.533252 | 7.4:+65027353 | MS.gene87166:CDS |
| GCAGCATTACAAACAAAAGA+TGG | 0.533266 | 7.4:+65013795 | MS.gene87166:CDS |
| CACAAAGAGAGGATGGTGGT+TGG | 0.535338 | 7.4:+65027170 | MS.gene87166:CDS |
| AAATGTTGTACAAACTGCAT+GGG | 0.536757 | 7.4:+65027354 | MS.gene87166:CDS |
| AATTAATTGTAGGTAAAATG+TGG | 0.537747 | 7.4:+65015540 | MS.gene87166:intron |
| TGAAGAATGAAGATGGAGGG+TGG | 0.541328 | 7.4:+65014969 | MS.gene87166:intron |
| AAGAATGAAGATGGAGGGTG+GGG | 0.542058 | 7.4:+65014971 | MS.gene87166:intron |
| AGCCAGCACGAGCTCAAGAA+TGG | 0.544550 | 7.4:+65026725 | MS.gene87166:CDS |
| TACTCTTAAAATCTCCTGAT+GGG | 0.544976 | 7.4:-65026251 | None:intergenic |
| TATGAGTATGTTGAGTGCAC+TGG | 0.545103 | 7.4:+65026896 | MS.gene87166:CDS |
| CCAATCACCCTCTTCCAACT+GGG | 0.547783 | 7.4:-65027801 | None:intergenic |
| CAGCACGATGAAGAGGAGTA+AGG | 0.552188 | 7.4:-65027760 | None:intergenic |
| TGCATGAGAATTCTTGGTGA+AGG | 0.552270 | 7.4:+65015046 | MS.gene87166:CDS |
| TCTCTGATCAAGACCATGGA+TGG | 0.553082 | 7.4:+65026307 | MS.gene87166:CDS |
| ATACTCTTAAAATCTCCTGA+TGG | 0.554329 | 7.4:-65026252 | None:intergenic |
| GTAGCCAAGAATGGGATGCT+GGG | 0.555547 | 7.4:+65025835 | MS.gene87166:CDS |
| TACAAACAAAAGATGGCCAT+TGG | 0.557380 | 7.4:+65013802 | MS.gene87166:CDS |
| AATCAGAAACTTGCCATCCA+TGG | 0.558868 | 7.4:-65026320 | None:intergenic |
| TAATTAACATGAACCTGTTG+GGG | 0.559218 | 7.4:-65027824 | None:intergenic |
| ATTTGAAGAATGAAGATGGA+GGG | 0.559482 | 7.4:+65014966 | MS.gene87166:intron |
| CGACCCTCACCTTTGCACAT+AGG | 0.559966 | 7.4:-65015706 | None:intergenic |
| ATTTCTCATCAATTCCCAGT+TGG | 0.563375 | 7.4:+65027787 | MS.gene87166:CDS |
| GTTTCTGATTGCACCGCAGA+TGG | 0.563530 | 7.4:+65026333 | MS.gene87166:CDS |
| TGTCTATGTCTTACTTGTAT+GGG | 0.563638 | 7.4:+65015585 | MS.gene87166:CDS |
| ATAGGACCAGCTATTTGAGC+AGG | 0.563758 | 7.4:-65013825 | None:intergenic |
| GGTTCATGGTATGGAAGTTG+GGG | 0.567893 | 7.4:+65027037 | MS.gene87166:CDS |
| AAAGGGTGGTATGCCATCAT+GGG | 0.569198 | 7.4:+65026702 | MS.gene87166:CDS |
| CTTTCAAGAAGCATCTTGCA+AGG | 0.569589 | 7.4:+65016135 | MS.gene87166:CDS |
| GTCATATTTCTAAAGGCTCG+TGG | 0.569948 | 7.4:+65026280 | MS.gene87166:CDS |
| TCACCTTTGCACATAGGTGA+CGG | 0.570059 | 7.4:-65015700 | None:intergenic |
| AATAGTCGATACATAACCAT+GGG | 0.570508 | 7.4:+65015951 | MS.gene87166:CDS |
| GGATGCATAGGAAGAAAAGA+AGG | 0.574739 | 7.4:-65015450 | None:intergenic |
| GATTGTTGGCTTTCTTCAAG+AGG | 0.581272 | 7.4:-65027331 | None:intergenic |
| AGCTACGACAACATTGAGAA+GGG | 0.581712 | 7.4:+65013758 | MS.gene87166:CDS |
| TGGGAGTATGATCCAAAAGC+AGG | 0.583052 | 7.4:+64999277 | MS.gene87166:CDS |
| ATGTATGCTTGCTTGTTGGG+TGG | 0.583216 | 7.4:+65016094 | MS.gene87166:CDS |
| GCATGAGAATTCTTGGTGAA+GGG | 0.584943 | 7.4:+65015047 | MS.gene87166:CDS |
| TCTTCTCACAACACAAAGAG+AGG | 0.584977 | 7.4:+65027159 | MS.gene87166:CDS |
| ATCAATTCCCAGTTGGAAGA+GGG | 0.587110 | 7.4:+65027794 | MS.gene87166:CDS |
| CAGCTATTTGAGCAGGCCAA+TGG | 0.588617 | 7.4:-65013818 | None:intergenic |
| ATTCTTGGTGAAGGGCCTGA+TGG | 0.589320 | 7.4:+65015055 | MS.gene87166:CDS |
| CTCACAACACAAAGAGAGGA+TGG | 0.591101 | 7.4:+65027163 | MS.gene87166:CDS |
| CATTTGAAGAATGAAGATGG+AGG | 0.591221 | 7.4:+65014965 | MS.gene87166:intron |
| GACTATTCTCATCCTCGTAG+TGG | 0.592078 | 7.4:-65015935 | None:intergenic |
| CACATAATACCTGGATGCAT+AGG | 0.592748 | 7.4:-65015462 | None:intergenic |
| CTGAAACCCACAAATAATCC+GGG | 0.593235 | 7.4:-65016160 | None:intergenic |
| TCCAAAAGCAGGTACTTTGG+AGG | 0.594250 | 7.4:+64999288 | MS.gene87166:CDS |
| ATTTACCTTCAGACCATCTG+CGG | 0.595501 | 7.4:-65026346 | None:intergenic |
| TCATGTCCTCTGGCAAGTGA+AGG | 0.597460 | 7.4:-65025906 | None:intergenic |
| AGAAACTGGATTCGTGATCA+CGG | 0.598192 | 7.4:+65015106 | MS.gene87166:CDS |
| TAGAGAAAAGAAAGATGTGG+AGG | 0.598827 | 7.4:+64999185 | None:intergenic |
| AATGTTGCCTCCAGAGATTG+TGG | 0.602295 | 7.4:+65026466 | MS.gene87166:CDS |
| TCTCTCAACTGTAATATGAG+TGG | 0.603226 | 7.4:-65015632 | None:intergenic |
| TACTCAGCTAAAGCCCACAA+TGG | 0.603816 | 7.4:-65028267 | None:intergenic |
| ATAAGCTATATCCAGAGCAT+AGG | 0.604185 | 7.4:+65026948 | MS.gene87166:CDS |
| GTGAAAAGATGGAACTAGAG+AGG | 0.605404 | 7.4:+65026489 | MS.gene87166:CDS |
| AAGCTACGACAACATTGAGA+AGG | 0.607021 | 7.4:+65013757 | MS.gene87166:CDS |
| AGATAAGTATTCACCAAAGG+AGG | 0.608286 | 7.4:-65013858 | None:intergenic |
| AGAAGATGGAATGACCATGC+AGG | 0.609510 | 7.4:+65016181 | MS.gene87166:CDS |
| CTTGGTGAAGGGCCTGATGG+AGG | 0.612929 | 7.4:+65015058 | MS.gene87166:CDS |
| AGCCCGTCACCTATGTGCAA+AGG | 0.613669 | 7.4:+65015697 | MS.gene87166:CDS |
| GGGTGGGGTCTACACATTGA+GGG | 0.623596 | 7.4:+65014986 | MS.gene87166:CDS |
| AAAGGCCAACGAGTGAGAAG+TGG | 0.626753 | 7.4:-65015864 | None:intergenic |
| GCATAGGAAGAAAAGAAGGA+AGG | 0.633205 | 7.4:-65015446 | None:intergenic |
| AGGGTGGGGTCTACACATTG+AGG | 0.633661 | 7.4:+65014985 | MS.gene87166:CDS |
| ATGTTGCCTCCAGAGATTGT+GGG | 0.635342 | 7.4:+65026467 | MS.gene87166:CDS |
| TTGCACCGCAGATGGTCTGA+AGG | 0.640126 | 7.4:+65026341 | MS.gene87166:CDS |
| TTTCAAGAAGCATCTTGCAA+GGG | 0.640222 | 7.4:+65016136 | MS.gene87166:CDS |
| ACTTTCTCTGATCAAGACCA+TGG | 0.645283 | 7.4:+65026303 | MS.gene87166:CDS |
| TGTTCCATTGTCTTCCACTG+GGG | 0.645805 | 7.4:+65028299 | MS.gene87166:CDS |
| TGGAGGTTGAAGATAGCAGA+TGG | 0.662909 | 7.4:+64999202 | MS.gene87166:CDS |
| TTAACCCCAGTGGAAGACAA+TGG | 0.667469 | 7.4:-65028303 | None:intergenic |
| GGAAGGATCCAAAACTCTGG+GGG | 0.670148 | 7.4:-65015429 | None:intergenic |
| GAATAGTCGATACATAACCA+TGG | 0.670449 | 7.4:+65015950 | MS.gene87166:CDS |
| AGGTTGAAGATAGCAGATGG+TGG | 0.670662 | 7.4:+64999205 | MS.gene87166:CDS |
| GTTGAGTGCAGTACAAAACA+TGG | 0.674695 | 7.4:-65015017 | None:intergenic |
| AACGTACCTGAAAACGCCAA+AGG | 0.675281 | 7.4:-64999384 | None:intergenic |
| GCTACGACAACATTGAGAAG+GGG | 0.675312 | 7.4:+65013759 | MS.gene87166:CDS |
| ATTGGTCCTTCACTTGCCAG+AGG | 0.678032 | 7.4:+65025900 | MS.gene87166:CDS |
| TGTTTGTGCTGAATATGTAT+GGG | 0.681487 | 7.4:-64999234 | None:intergenic |
| GTACCTGAAAACGCCAAAGG+AGG | 0.681958 | 7.4:-64999381 | None:intergenic |
| AATGTTGTACAAACTGCATG+GGG | 0.691397 | 7.4:+65027355 | MS.gene87166:CDS |
| GTAACACATATACCTTCATG+GGG | 0.695399 | 7.4:+65015133 | MS.gene87166:CDS |
| TGTTGGGTGGAAGATCCAGA+TGG | 0.696381 | 7.4:+65016107 | MS.gene87166:CDS |
| AGGAAGGATCCAAAACTCTG+GGG | 0.700209 | 7.4:-65015430 | None:intergenic |
| ACAACACAAAGAGAGGATGG+TGG | 0.742113 | 7.4:+65027166 | MS.gene87166:CDS |
| AACTGGATTCGTGATCACGG+TGG | 0.769493 | 7.4:+65015109 | MS.gene87166:CDS |
| ATAGTCGATACATAACCATG+GGG | 0.779304 | 7.4:+65015952 | MS.gene87166:CDS |
| AATGAAGCATATCCACTACG+AGG | 0.801868 | 7.4:+65015923 | MS.gene87166:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 64999199 | 65028344 | 64999199 | ID=MS.gene87166 |
| chr7.4 | mRNA | 64999199 | 65028344 | 64999199 | ID=MS.gene87166.t1;Parent=MS.gene87166 |
| chr7.4 | exon | 64999199 | 64999399 | 64999199 | ID=MS.gene87166.t1.exon1;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 64999199 | 64999399 | 64999199 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65013681 | 65013866 | 65013681 | ID=MS.gene87166.t1.exon2;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65013681 | 65013866 | 65013681 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65014748 | 65014837 | 65014748 | ID=MS.gene87166.t1.exon3;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65014748 | 65014837 | 65014748 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65014974 | 65015171 | 65014974 | ID=MS.gene87166.t1.exon4;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65014974 | 65015171 | 65014974 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65015390 | 65015474 | 65015390 | ID=MS.gene87166.t1.exon5;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65015390 | 65015474 | 65015390 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65015552 | 65015718 | 65015552 | ID=MS.gene87166.t1.exon6;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65015552 | 65015718 | 65015552 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65015795 | 65015986 | 65015795 | ID=MS.gene87166.t1.exon7;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65015795 | 65015986 | 65015795 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65016089 | 65016202 | 65016089 | ID=MS.gene87166.t1.exon8;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65016089 | 65016202 | 65016089 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65025828 | 65025947 | 65025828 | ID=MS.gene87166.t1.exon9;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65025828 | 65025947 | 65025828 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65026240 | 65026362 | 65026240 | ID=MS.gene87166.t1.exon10;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65026240 | 65026362 | 65026240 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65026449 | 65026523 | 65026449 | ID=MS.gene87166.t1.exon11;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65026449 | 65026523 | 65026449 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65026697 | 65026753 | 65026697 | ID=MS.gene87166.t1.exon12;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65026697 | 65026753 | 65026697 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65026854 | 65027222 | 65026854 | ID=MS.gene87166.t1.exon13;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65026854 | 65027222 | 65026854 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65027322 | 65027405 | 65027322 | ID=MS.gene87166.t1.exon14;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65027322 | 65027405 | 65027322 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65027749 | 65027832 | 65027749 | ID=MS.gene87166.t1.exon15;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65027749 | 65027832 | 65027749 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| chr7.4 | exon | 65028204 | 65028344 | 65028204 | ID=MS.gene87166.t1.exon16;Parent=MS.gene87166.t1 |
| chr7.4 | CDS | 65028204 | 65028344 | 65028204 | ID=cds.MS.gene87166.t1;Parent=MS.gene87166.t1 |
| Gene Sequence |
| Protein sequence |
