Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011204.t1 | XP_013444353.1 | 93.9 | 760 | 46 | 0 | 1 | 760 | 1 | 760 | 0.00E+00 | 1535.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011204.t1 | Q9LRH7 | 88.1 | 757 | 90 | 0 | 1 | 757 | 1 | 757 | 0.0e+00 | 1449.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011204.t1 | A0A072TXY8 | 93.9 | 760 | 46 | 0 | 1 | 760 | 1 | 760 | 0.0e+00 | 1535.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011204 | MS.gene98126 | PPI |
| MS.gene011204 | MS.gene034308 | PPI |
| MS.gene011204 | MS.gene50096 | PPI |
| MS.gene011204 | MS.gene22278 | PPI |
| MS.gene011204 | MS.gene37340 | PPI |
| MS.gene011204 | MS.gene024711 | PPI |
| MS.gene98129 | MS.gene011204 | PPI |
| MS.gene011204 | MS.gene98129 | PPI |
| MS.gene011204 | MS.gene21690 | PPI |
| MS.gene011204 | MS.gene034307 | PPI |
| MS.gene011204 | MS.gene07774 | PPI |
| MS.gene011204 | MS.gene21938 | PPI |
| MS.gene011204 | MS.gene87166 | PPI |
| MS.gene011204 | MS.gene053114 | PPI |
| MS.gene011204 | MS.gene000594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011204.t1 | MTR_8g016975 | 93.947 | 760 | 46 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1506 |
| MS.gene011204.t1 | MTR_8g016960 | 93.008 | 758 | 46 | 2 | 1 | 757 | 1 | 752 | 0.0 | 1466 |
| MS.gene011204.t1 | MTR_8g017020 | 88.684 | 760 | 52 | 1 | 1 | 760 | 1 | 726 | 0.0 | 1391 |
| MS.gene011204.t1 | MTR_4g005190 | 81.242 | 757 | 142 | 0 | 1 | 757 | 1 | 757 | 0.0 | 1337 |
| MS.gene011204.t1 | MTR_0013s0230 | 79.551 | 758 | 154 | 1 | 1 | 757 | 1 | 758 | 0.0 | 1311 |
| MS.gene011204.t1 | MTR_4g005270 | 78.864 | 757 | 160 | 0 | 1 | 757 | 1 | 757 | 0.0 | 1302 |
| MS.gene011204.t1 | MTR_4g005190 | 80.419 | 669 | 131 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1172 |
| MS.gene011204.t1 | MTR_7g034535 | 76.657 | 694 | 161 | 1 | 68 | 760 | 3 | 696 | 0.0 | 1157 |
| MS.gene011204.t1 | MTR_3g436160 | 78.042 | 674 | 144 | 1 | 84 | 757 | 27 | 696 | 0.0 | 1119 |
| MS.gene011204.t1 | MTR_6g093180 | 58.201 | 756 | 313 | 2 | 1 | 756 | 1 | 753 | 0.0 | 986 |
| MS.gene011204.t1 | MTR_5g008810 | 57.596 | 757 | 317 | 4 | 1 | 756 | 1 | 754 | 0.0 | 931 |
| MS.gene011204.t1 | MTR_6g034985 | 55.159 | 756 | 336 | 2 | 1 | 756 | 1 | 753 | 0.0 | 928 |
| MS.gene011204.t1 | MTR_6g035010 | 53.510 | 755 | 348 | 2 | 1 | 755 | 1 | 752 | 0.0 | 886 |
| MS.gene011204.t1 | MTR_6g093100 | 52.124 | 777 | 350 | 9 | 1 | 757 | 1 | 775 | 0.0 | 833 |
| MS.gene011204.t1 | MTR_6g088140 | 51.969 | 762 | 340 | 7 | 1 | 757 | 1 | 741 | 0.0 | 829 |
| MS.gene011204.t1 | MTR_7g062020 | 51.365 | 769 | 360 | 5 | 1 | 757 | 1 | 767 | 0.0 | 826 |
| MS.gene011204.t1 | MTR_6g088140 | 50.890 | 674 | 306 | 6 | 1 | 670 | 1 | 653 | 0.0 | 714 |
| MS.gene011204.t1 | MTR_8g016940 | 70.000 | 270 | 79 | 1 | 491 | 760 | 2 | 269 | 4.41e-134 | 398 |
| MS.gene011204.t1 | MTR_8g017040 | 85.075 | 67 | 10 | 0 | 1 | 67 | 1 | 67 | 3.59e-36 | 132 |
| MS.gene011204.t1 | MTR_3g436170 | 86.765 | 68 | 9 | 0 | 1 | 68 | 1 | 68 | 5.52e-36 | 130 |
| MS.gene011204.t1 | MTR_8g016570 | 69.697 | 66 | 20 | 0 | 695 | 760 | 28 | 93 | 4.41e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011204.t1 | AT1G78960 | 70.690 | 754 | 220 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1176 |
| MS.gene011204.t1 | AT1G78960 | 70.690 | 754 | 220 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1176 |
| MS.gene011204.t1 | AT1G78960 | 70.690 | 754 | 220 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1176 |
| MS.gene011204.t1 | AT1G78950 | 71.636 | 758 | 214 | 1 | 1 | 757 | 1 | 758 | 0.0 | 1173 |
| MS.gene011204.t1 | AT1G78950 | 71.636 | 758 | 214 | 1 | 1 | 757 | 10 | 767 | 0.0 | 1173 |
| MS.gene011204.t1 | AT1G78955 | 70.580 | 758 | 222 | 1 | 1 | 757 | 1 | 758 | 0.0 | 1162 |
| MS.gene011204.t1 | AT1G78960 | 70.539 | 723 | 212 | 1 | 1 | 722 | 1 | 723 | 0.0 | 1123 |
| MS.gene011204.t1 | AT1G78970 | 67.546 | 758 | 242 | 2 | 1 | 757 | 1 | 755 | 0.0 | 1095 |
| MS.gene011204.t1 | AT1G78970 | 67.546 | 758 | 242 | 2 | 1 | 757 | 1 | 755 | 0.0 | 1095 |
| MS.gene011204.t1 | AT1G78970 | 67.546 | 758 | 242 | 2 | 1 | 757 | 1 | 755 | 0.0 | 1095 |
| MS.gene011204.t1 | AT1G66960 | 64.559 | 759 | 268 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1091 |
| MS.gene011204.t1 | AT1G66960 | 64.559 | 759 | 268 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1091 |
| MS.gene011204.t1 | AT1G66960 | 64.559 | 759 | 268 | 1 | 1 | 758 | 10 | 768 | 0.0 | 1091 |
| MS.gene011204.t1 | AT1G66960 | 64.559 | 759 | 268 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1091 |
| MS.gene011204.t1 | AT1G78955 | 70.376 | 692 | 205 | 0 | 66 | 757 | 2 | 693 | 0.0 | 1061 |
| MS.gene011204.t1 | AT1G78955 | 69.954 | 659 | 198 | 0 | 66 | 724 | 2 | 660 | 0.0 | 1001 |
| MS.gene011204.t1 | AT1G78960 | 72.139 | 603 | 168 | 0 | 151 | 753 | 1 | 603 | 0.0 | 967 |
| MS.gene011204.t1 | AT2G07050 | 56.917 | 759 | 323 | 4 | 1 | 758 | 1 | 756 | 0.0 | 931 |
| MS.gene011204.t1 | AT5G36150 | 54.354 | 758 | 345 | 1 | 1 | 757 | 1 | 758 | 0.0 | 925 |
| MS.gene011204.t1 | AT5G36150 | 54.354 | 758 | 345 | 1 | 1 | 757 | 1 | 758 | 0.0 | 925 |
| MS.gene011204.t1 | AT1G78955 | 69.752 | 605 | 183 | 0 | 66 | 670 | 2 | 606 | 0.0 | 919 |
| MS.gene011204.t1 | AT5G48010 | 55.033 | 765 | 335 | 4 | 1 | 756 | 1 | 765 | 0.0 | 912 |
| MS.gene011204.t1 | AT1G78500 | 55.381 | 762 | 333 | 3 | 1 | 755 | 1 | 762 | 0.0 | 909 |
| MS.gene011204.t1 | AT1G78500 | 55.381 | 762 | 333 | 3 | 1 | 755 | 1 | 762 | 0.0 | 909 |
| MS.gene011204.t1 | AT1G78955 | 71.870 | 583 | 164 | 0 | 175 | 757 | 1 | 583 | 0.0 | 906 |
| MS.gene011204.t1 | AT4G15370 | 54.342 | 760 | 335 | 4 | 1 | 755 | 1 | 753 | 0.0 | 904 |
| MS.gene011204.t1 | AT4G15370 | 54.128 | 763 | 335 | 5 | 1 | 755 | 1 | 756 | 0.0 | 901 |
| MS.gene011204.t1 | AT4G15340 | 54.534 | 761 | 340 | 3 | 1 | 755 | 1 | 761 | 0.0 | 898 |
| MS.gene011204.t1 | AT5G48010 | 54.379 | 765 | 332 | 5 | 1 | 756 | 1 | 757 | 0.0 | 892 |
| MS.gene011204.t1 | AT5G42600 | 53.360 | 759 | 351 | 3 | 1 | 757 | 1 | 758 | 0.0 | 879 |
| MS.gene011204.t1 | AT2G07050 | 56.907 | 666 | 284 | 3 | 94 | 758 | 2 | 665 | 0.0 | 829 |
| MS.gene011204.t1 | AT3G45130 | 53.158 | 760 | 346 | 6 | 1 | 756 | 1 | 754 | 0.0 | 802 |
| MS.gene011204.t1 | AT3G45130 | 53.158 | 760 | 346 | 6 | 1 | 756 | 1 | 754 | 0.0 | 802 |
| MS.gene011204.t1 | AT3G45130 | 53.158 | 760 | 346 | 6 | 1 | 756 | 1 | 754 | 0.0 | 801 |
| MS.gene011204.t1 | AT3G45130 | 53.158 | 760 | 346 | 6 | 1 | 756 | 1 | 754 | 0.0 | 801 |
| MS.gene011204.t1 | AT3G45130 | 53.158 | 760 | 346 | 6 | 1 | 756 | 1 | 754 | 0.0 | 801 |
| MS.gene011204.t1 | AT3G29255 | 48.285 | 758 | 331 | 6 | 2 | 757 | 6 | 704 | 0.0 | 764 |
| MS.gene011204.t1 | AT4G15340 | 53.792 | 567 | 256 | 3 | 1 | 561 | 1 | 567 | 0.0 | 660 |
| MS.gene011204.t1 | AT1G78480 | 46.897 | 145 | 63 | 5 | 71 | 207 | 48 | 186 | 3.80e-28 | 112 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGCTCCCAGACTATTTA+TGG | 0.105452 | 8.2:+76570446 | MS.gene011204:CDS |
| ACAGAATCATATAACCTTTC+AGG | 0.175016 | 8.2:-76571554 | None:intergenic |
| TGACCTTCTTTGGCGCTTTC+AGG | 0.176733 | 8.2:+76566989 | MS.gene011204:CDS |
| CTTTGATACAAGATCTAATA+TGG | 0.197033 | 8.2:+76570135 | MS.gene011204:CDS |
| TCTCTAACCAGCTTGTTTAA+TGG | 0.206776 | 8.2:-76570200 | None:intergenic |
| TTTGCTTCACTTATGGTTCT+TGG | 0.234709 | 8.2:+76574009 | MS.gene011204:CDS |
| AGCCCTGCAGTGACCTTCTT+TGG | 0.261075 | 8.2:+76566979 | MS.gene011204:CDS |
| CACTTGTTTGTTTATCTTCA+AGG | 0.278614 | 8.2:-76573959 | None:intergenic |
| TGGGGAATTTGCTTCACTTA+TGG | 0.280051 | 8.2:+76574002 | MS.gene011204:CDS |
| TTGCACTGCAGAAGGTTTAA+AGG | 0.292374 | 8.2:+76571376 | MS.gene011204:CDS |
| ATCTCTTTCCGATACTCTTC+GGG | 0.294290 | 8.2:-76568415 | None:intergenic |
| ATGGTTCATGGTATGGAAAT+TGG | 0.299175 | 8.2:+76573982 | MS.gene011204:CDS |
| TTGGACCAATTTCCTCAATT+AGG | 0.309158 | 8.2:-76570648 | None:intergenic |
| ATTTCCTCAAGAAATTCTAT+TGG | 0.312858 | 8.2:-76573810 | None:intergenic |
| ACTAACCTAATTGAGGAAAT+TGG | 0.317825 | 8.2:+76570643 | MS.gene011204:CDS |
| TGGTTCATGGTATGGAAATT+GGG | 0.335402 | 8.2:+76573983 | MS.gene011204:CDS |
| CAGGTTAGGGACAACCCTTC+AGG | 0.358094 | 8.2:+76571272 | MS.gene011204:intron |
| TCAGAAACCCATAAATAGTC+TGG | 0.363871 | 8.2:-76570454 | None:intergenic |
| AAATCACATATCAGCACTTC+AGG | 0.367235 | 8.2:+76568006 | MS.gene011204:CDS |
| CCCTCACCTTTGCACATAGA+TGG | 0.373946 | 8.2:-76569988 | None:intergenic |
| TCTCTCAACTTTAAGATCAA+TGG | 0.375715 | 8.2:-76569917 | None:intergenic |
| ATGCCGATGTCTTACTTGTA+TGG | 0.377545 | 8.2:+76569869 | MS.gene011204:CDS |
| AGATACTTGGTATCTTTGAT+TGG | 0.378106 | 8.2:+76569629 | MS.gene011204:intron |
| TTTGTGCATGCTTGCTTGTT+GGG | 0.380977 | 8.2:+76570384 | MS.gene011204:CDS |
| AATAGTCGATACATAACTAT+TGG | 0.386502 | 8.2:+76570269 | MS.gene011204:CDS |
| TATTTATGGGTTTCTGAAGA+TGG | 0.392476 | 8.2:+76570460 | MS.gene011204:CDS |
| CTTGTGCTAAAGCAAGAAAA+TGG | 0.396314 | 8.2:+76569449 | MS.gene011204:CDS |
| AATTTCCTCAATTAGGTTAG+TGG | 0.397166 | 8.2:-76570641 | None:intergenic |
| ACTTCTTCCTTTCTATGCTC+AGG | 0.397739 | 8.2:-76573906 | None:intergenic |
| GGATAGTTTATACATATTCA+TGG | 0.398348 | 8.2:+76570157 | MS.gene011204:CDS |
| GTGTTACATATGTACCTTCA+TGG | 0.398440 | 8.2:+76569488 | MS.gene011204:CDS |
| AAGGCTCCCAGACTATTTAT+GGG | 0.399261 | 8.2:+76570447 | MS.gene011204:CDS |
| ACATACAGCATGGGCTCTAA+TGG | 0.402160 | 8.2:+76574311 | MS.gene011204:CDS |
| CAAAGAGAGGATGGTGGGTG+GGG | 0.402696 | 8.2:+76574119 | MS.gene011204:CDS |
| AATCTCTTTCCGATACTCTT+CGG | 0.409019 | 8.2:-76568416 | None:intergenic |
| AAAAGGGTGGTTTACCAGCT+TGG | 0.409799 | 8.2:+76573572 | MS.gene011204:CDS |
| ACAATTGTCATAAGTCTTGC+CGG | 0.411569 | 8.2:-76574057 | None:intergenic |
| TTATTTGTGCTGAATATGTA+TGG | 0.417296 | 8.2:-76566846 | None:intergenic |
| TTCTTGAATGCATCTCCGTT+TGG | 0.417581 | 8.2:-76570415 | None:intergenic |
| TCGTTACATATATTGTCATC+AGG | 0.421007 | 8.2:+76568441 | MS.gene011204:CDS |
| TCAAACTAGCATCCCATGTT+TGG | 0.421691 | 8.2:-76570600 | None:intergenic |
| AACAAACAAGTGATGGTTCA+TGG | 0.421729 | 8.2:+76573970 | MS.gene011204:CDS |
| GCAAGTGTAAAGATTGAAGA+TGG | 0.426968 | 8.2:+76567935 | MS.gene011204:CDS |
| AAAGGGTGGTTTACCAGCTT+GGG | 0.427919 | 8.2:+76573573 | MS.gene011204:CDS |
| TCAACTTGAGCTCTCTCCTC+AGG | 0.438267 | 8.2:-76566915 | None:intergenic |
| GGCTTTGATTCATGCCGGCC+AGG | 0.440066 | 8.2:+76574332 | MS.gene011204:CDS |
| AACTATTGGATGTGTGGAAA+AGG | 0.442430 | 8.2:+76570283 | MS.gene011204:CDS |
| TGAAGAATGAAGATGGAGGA+TGG | 0.442753 | 8.2:+76569326 | MS.gene011204:intron |
| TACATATGTATGCGAATACT+TGG | 0.446330 | 8.2:+76569397 | MS.gene011204:CDS |
| TTCATCATCAATTCAAGCTA+TGG | 0.446366 | 8.2:+76573863 | MS.gene011204:CDS |
| GGTTCTTGGTTTGCACTTGG+TGG | 0.447161 | 8.2:+76574023 | MS.gene011204:CDS |
| CAGATATATATACCTCTTGA+AGG | 0.447238 | 8.2:+76574270 | MS.gene011204:intron |
| TTTCATTTGAAGAATGAAGA+TGG | 0.448568 | 8.2:+76569319 | MS.gene011204:intron |
| GGATATGTTTCATTGCTACT+TGG | 0.452661 | 8.2:-76570232 | None:intergenic |
| CATTGGCCTTCTCTAAATGC+TGG | 0.457356 | 8.2:+76568040 | MS.gene011204:CDS |
| GAAGAATGAAGATGGAGGAT+GGG | 0.461280 | 8.2:+76569327 | MS.gene011204:intron |
| GCTTGCCACTAACCTAATTG+AGG | 0.462351 | 8.2:+76570636 | MS.gene011204:CDS |
| TCCAACTAGAGGAGGGTGAT+TGG | 0.463359 | 8.2:+76574482 | MS.gene011204:CDS |
| ACCTTCTCTGATCAAGATCA+TGG | 0.472457 | 8.2:+76571338 | MS.gene011204:CDS |
| AGAGAAGGTCCATGACCCTT+TGG | 0.472836 | 8.2:-76571324 | None:intergenic |
| TCATTTCTTCTTAAGCATCC+AGG | 0.473476 | 8.2:+76569694 | MS.gene011204:CDS |
| TGAATTTATCAAGAATTCTC+AGG | 0.473702 | 8.2:+76570687 | MS.gene011204:CDS |
| TCCTCAGGAGTACCAGCATC+AGG | 0.474674 | 8.2:-76566900 | None:intergenic |
| GGAGGGTGATTGGCCCCAAC+AGG | 0.475447 | 8.2:+76574492 | MS.gene011204:CDS |
| ACAAGTGATGGTTCATGGTA+TGG | 0.477045 | 8.2:+76573975 | MS.gene011204:CDS |
| CTGTATGTACAATATTTGAT+TGG | 0.477759 | 8.2:-76574296 | None:intergenic |
| TTGATTGAGATGAACCTGTT+GGG | 0.481421 | 8.2:-76574506 | None:intergenic |
| TATGGTTCTTGGTTTGCACT+TGG | 0.483680 | 8.2:+76574020 | MS.gene011204:CDS |
| TTCAGGCTAGTGATGGTCAT+TGG | 0.484302 | 8.2:+76568023 | MS.gene011204:CDS |
| TGCAGGGCTTAACTTTGAAA+CGG | 0.490245 | 8.2:-76566965 | None:intergenic |
| TTGTATGGGAAGAGGTTTGT+CGG | 0.493316 | 8.2:+76569884 | MS.gene011204:CDS |
| GCCAATCACCCTCCTCTAGT+TGG | 0.494565 | 8.2:-76574483 | None:intergenic |
| GACTATTCTCATCTTCATAG+TGG | 0.496269 | 8.2:-76570253 | None:intergenic |
| ACAAAGAGAGGATGGTGGGT+GGG | 0.498212 | 8.2:+76574118 | MS.gene011204:CDS |
| CGATGTTCCCCGAAGAGTAT+CGG | 0.500020 | 8.2:+76568407 | MS.gene011204:CDS |
| AAGAATGAAGATGGAGGATG+GGG | 0.503155 | 8.2:+76569328 | MS.gene011204:intron |
| GCGCCAAAGAAGGTCACTGC+AGG | 0.507403 | 8.2:-76566982 | None:intergenic |
| ATCAGAAGCTCTAGAATGGT+TGG | 0.507483 | 8.2:+76573600 | MS.gene011204:CDS |
| GCTTCTGATGGCTCCCAAGC+TGG | 0.508303 | 8.2:-76573586 | None:intergenic |
| TGTCTTACTTGTATGGGAAG+AGG | 0.508691 | 8.2:+76569876 | MS.gene011204:CDS |
| CATATTAGATCTTGTATCAA+AGG | 0.511080 | 8.2:-76570134 | None:intergenic |
| CAAGTGTAAAGATTGAAGAT+GGG | 0.512156 | 8.2:+76567936 | MS.gene011204:CDS |
| AATATATCCTGAGCATAGAA+AGG | 0.513403 | 8.2:+76573899 | MS.gene011204:CDS |
| ACAGCACGATGAAGAGGAGT+AGG | 0.514365 | 8.2:-76574442 | None:intergenic |
| TTTGATACAAGATCTAATAT+GGG | 0.519547 | 8.2:+76570136 | MS.gene011204:CDS |
| AGAAAATGGATTCATGATCA+TGG | 0.523003 | 8.2:+76569463 | MS.gene011204:CDS |
| TGGATGCTTAAGAAGAAATG+AGG | 0.525135 | 8.2:-76569692 | None:intergenic |
| ATTGGTCCAACACTTGCAAA+AGG | 0.531185 | 8.2:+76570661 | MS.gene011204:CDS |
| TTTAAGATCAATGGTGTGAT+CGG | 0.532658 | 8.2:-76569908 | None:intergenic |
| TTAGATCTTGTATCAAAGGA+TGG | 0.533010 | 8.2:-76570130 | None:intergenic |
| GAGGGAAGCATCCAAAACTC+AGG | 0.533300 | 8.2:-76569673 | None:intergenic |
| AATGTTGTGTTATTGTCGAT+TGG | 0.533359 | 8.2:+76569841 | MS.gene011204:CDS |
| TGTTACATATGTACCTTCAT+GGG | 0.534237 | 8.2:+76569489 | MS.gene011204:CDS |
| GGAGAGAGCTCAAGTTGAAA+CGG | 0.537436 | 8.2:+76566920 | MS.gene011204:CDS |
| TAGATCTTGTATCAAAGGAT+GGG | 0.537511 | 8.2:-76570129 | None:intergenic |
| GGCTGAAGATAGCAGATGGT+GGG | 0.541977 | 8.2:+76566817 | MS.gene011204:CDS |
| TGCCGATGTCTTACTTGTAT+GGG | 0.549133 | 8.2:+76569870 | MS.gene011204:CDS |
| AATGTTGCCTCCGGAGATTG+TGG | 0.550586 | 8.2:+76571517 | MS.gene011204:CDS |
| ATACTTGGAGAAGGTCCAAA+TGG | 0.552951 | 8.2:+76569412 | MS.gene011204:CDS |
| TCATTGGCCATTAAACAAGC+TGG | 0.555486 | 8.2:+76570193 | MS.gene011204:CDS |
| GGTTCATGGTATGGAAATTG+GGG | 0.556213 | 8.2:+76573984 | MS.gene011204:CDS |
| AGCCATCAGAAGCTCTAGAA+TGG | 0.559464 | 8.2:+76573596 | MS.gene011204:CDS |
| GAAGATAAACAAACAAGTGA+TGG | 0.562379 | 8.2:+76573963 | MS.gene011204:CDS |
| CTACCTGAAAGCGCCAAAGA+AGG | 0.562438 | 8.2:-76566992 | None:intergenic |
| CAGAAACCCATAAATAGTCT+GGG | 0.562486 | 8.2:-76570453 | None:intergenic |
| CTTGGTGGTCTAGCAGCCGC+CGG | 0.562989 | 8.2:+76574038 | MS.gene011204:CDS |
| CAAATATTGTACATACAGCA+TGG | 0.563545 | 8.2:+76574301 | MS.gene011204:CDS |
| TGCTCTCAAAATCTCCTGAA+GGG | 0.565625 | 8.2:-76571286 | None:intergenic |
| GTCATATGTCCAAAGGGTCA+TGG | 0.566439 | 8.2:+76571315 | MS.gene011204:CDS |
| AAGTGTAAAGATTGAAGATG+GGG | 0.571499 | 8.2:+76567937 | MS.gene011204:CDS |
| ATGTTGCCTCCGGAGATTGT+GGG | 0.573858 | 8.2:+76571518 | MS.gene011204:CDS |
| CATCAATCTCCAACTAGAGG+AGG | 0.575439 | 8.2:+76574474 | MS.gene011204:CDS |
| GTTTCAGATTGCACTGCAGA+AGG | 0.577648 | 8.2:+76571368 | MS.gene011204:CDS |
| TCTCTGATCAAGATCATGGA+TGG | 0.577834 | 8.2:+76571342 | MS.gene011204:CDS |
| ATTGAAACTATACAGATACT+TGG | 0.578759 | 8.2:+76569616 | MS.gene011204:intron |
| ATGCTCTCAAAATCTCCTGA+AGG | 0.579871 | 8.2:-76571287 | None:intergenic |
| GTGAGATATGTAGATTCTGA+GGG | 0.581444 | 8.2:+76567889 | MS.gene011204:intron |
| TGGGAGTTTGATCCTGATGC+TGG | 0.581517 | 8.2:+76566888 | MS.gene011204:CDS |
| AGGGAAGCATCCAAAACTCA+GGG | 0.583554 | 8.2:-76569672 | None:intergenic |
| TCTGCTTACAATACAAAGAG+AGG | 0.583811 | 8.2:+76574106 | MS.gene011204:CDS |
| ATGTACCGTCATATGTCCAA+AGG | 0.585979 | 8.2:+76571308 | MS.gene011204:CDS |
| CTTACAATACAAAGAGAGGA+TGG | 0.587182 | 8.2:+76574110 | MS.gene011204:CDS |
| TTTGATTGGCTTCCTTCAAG+AGG | 0.588636 | 8.2:-76574282 | None:intergenic |
| AGATCTTGTATCAAAGGATG+GGG | 0.592595 | 8.2:-76570128 | None:intergenic |
| CATTCAAGAAGCATCTTGCA+AGG | 0.592657 | 8.2:+76570428 | MS.gene011204:CDS |
| TACAAAGAGAGGATGGTGGG+TGG | 0.592851 | 8.2:+76574117 | MS.gene011204:CDS |
| CAATACAAAGAGAGGATGGT+GGG | 0.595099 | 8.2:+76574114 | MS.gene011204:CDS |
| TCCATGATCTTGATCAGAGA+AGG | 0.596019 | 8.2:-76571339 | None:intergenic |
| ATACATAACTATTGGATGTG+TGG | 0.596458 | 8.2:+76570277 | MS.gene011204:CDS |
| CGCCAAAGAAGGTCACTGCA+GGG | 0.596941 | 8.2:-76566981 | None:intergenic |
| AAATATTGTACATACAGCAT+GGG | 0.597214 | 8.2:+76574302 | MS.gene011204:CDS |
| CATTTGAAGAATGAAGATGG+AGG | 0.598405 | 8.2:+76569322 | MS.gene011204:intron |
| TGTACCGTCATATGTCCAAA+GGG | 0.598699 | 8.2:+76571309 | MS.gene011204:CDS |
| AACCATTCTAGAGCTTCTGA+TGG | 0.600501 | 8.2:-76573598 | None:intergenic |
| AGGGAGGAAAATAAAAGAGA+GGG | 0.603160 | 8.2:-76568063 | None:intergenic |
| CTAATGGCTTTGATTCATGC+CGG | 0.605359 | 8.2:+76574327 | MS.gene011204:CDS |
| GTGCATGCTTGCTTGTTGGG+TGG | 0.605995 | 8.2:+76570387 | MS.gene011204:CDS |
| CTTTAGCTGAATATCGTAGA+CGG | 0.606153 | 8.2:+76574756 | MS.gene011204:CDS |
| TAGAGATATATTTCCAACGT+GGG | 0.606585 | 8.2:+76574733 | MS.gene011204:CDS |
| GGATGCTTAAGAAGAAATGA+GGG | 0.607000 | 8.2:-76569691 | None:intergenic |
| AATGGCCAATGAGTCAAAAG+TGG | 0.609475 | 8.2:-76570182 | None:intergenic |
| CAATCCAATAGAATTTCTTG+AGG | 0.612660 | 8.2:+76573806 | MS.gene011204:CDS |
| TCAGCACTTCAGGCTAGTGA+TGG | 0.615017 | 8.2:+76568016 | MS.gene011204:CDS |
| AAAAGGCGAAGGTACCTGGC+CGG | 0.615289 | 8.2:-76574346 | None:intergenic |
| AATCATCAATCTCCAACTAG+AGG | 0.616577 | 8.2:+76574471 | MS.gene011204:CDS |
| ATCAATCTCCAACTAGAGGA+GGG | 0.616631 | 8.2:+76574475 | MS.gene011204:CDS |
| TAAGGTAATTTATACATGCA+GGG | 0.618282 | 8.2:-76570488 | None:intergenic |
| TGATTGAGATGAACCTGTTG+GGG | 0.621172 | 8.2:-76574505 | None:intergenic |
| ATGACCCTTTGGACATATGA+CGG | 0.621240 | 8.2:-76571313 | None:intergenic |
| TGTATGCGAATACTTGGAGA+AGG | 0.623491 | 8.2:+76569403 | MS.gene011204:CDS |
| TGTTGCCTCCGGAGATTGTG+GGG | 0.623938 | 8.2:+76571519 | MS.gene011204:CDS |
| AAGGGAGGAAAATAAAAGAG+AGG | 0.624822 | 8.2:-76568064 | None:intergenic |
| CAGCACGATGAAGAGGAGTA+GGG | 0.624876 | 8.2:-76574441 | None:intergenic |
| AGAGGGCCAGCATTTAGAGA+AGG | 0.625869 | 8.2:-76568046 | None:intergenic |
| CTTGGAGAAGGTCCAAATGG+AGG | 0.629669 | 8.2:+76569415 | MS.gene011204:CDS |
| AGTACGCCATCTATGTGCAA+AGG | 0.630962 | 8.2:+76569982 | MS.gene011204:CDS |
| TGTGAGATATGTAGATTCTG+AGG | 0.634851 | 8.2:+76567888 | MS.gene011204:intron |
| ATTTACTGCTCTTCTTAACG+TGG | 0.642496 | 8.2:-76567987 | None:intergenic |
| GTAAAGATTGAAGATGGGGA+AGG | 0.644517 | 8.2:+76567941 | MS.gene011204:CDS |
| ATATGAATACTCACCAAGGG+AGG | 0.647187 | 8.2:-76568079 | None:intergenic |
| TGTTGGGTGGAAGATCCAAA+CGG | 0.648756 | 8.2:+76570400 | MS.gene011204:CDS |
| TTCCCATACAAGTAAGACAT+CGG | 0.655423 | 8.2:-76569872 | None:intergenic |
| AGGCTGAAGATAGCAGATGG+TGG | 0.657514 | 8.2:+76566816 | MS.gene011204:CDS |
| TCCTGATGCTGGTACTCCTG+AGG | 0.658323 | 8.2:+76566899 | MS.gene011204:CDS |
| GGGAAGCATCCAAAACTCAG+GGG | 0.661514 | 8.2:-76569671 | None:intergenic |
| ATATAATATATAATATGTGG+AGG | 0.662776 | 8.2:+76566796 | None:intergenic |
| GTTACATATGTACCTTCATG+GGG | 0.671151 | 8.2:+76569490 | MS.gene011204:CDS |
| GGATGGGGACTACATGTAGA+GGG | 0.672729 | 8.2:+76569343 | MS.gene011204:CDS |
| AGGATGGGGACTACATGTAG+AGG | 0.676619 | 8.2:+76569342 | MS.gene011204:CDS |
| ACAATACAAAGAGAGGATGG+TGG | 0.676874 | 8.2:+76574113 | MS.gene011204:CDS |
| GGAAGCATCCAAAACTCAGG+GGG | 0.679671 | 8.2:-76569670 | None:intergenic |
| TATTCAGCTAAAGCCCACGT+TGG | 0.690016 | 8.2:-76574746 | None:intergenic |
| TGGAGGCTGAAGATAGCAGA+TGG | 0.714266 | 8.2:+76566813 | MS.gene011204:CDS |
| TCTCTTTCCGATACTCTTCG+GGG | 0.724539 | 8.2:-76568414 | None:intergenic |
| ATTGTCATAAGTCTTGCCGG+CGG | 0.737256 | 8.2:-76574054 | None:intergenic |
| AAATGGATTCATGATCATGG+TGG | 0.780001 | 8.2:+76569466 | MS.gene011204:CDS |
| ATAGAGATATATTTCCAACG+TGG | 0.793021 | 8.2:+76574732 | MS.gene011204:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 76566810 | 76574799 | 76566810 | ID=MS.gene011204 |
| chr8.2 | mRNA | 76566810 | 76574799 | 76566810 | ID=MS.gene011204.t1;Parent=MS.gene011204 |
| chr8.2 | exon | 76566810 | 76567010 | 76566810 | ID=MS.gene011204.t1.exon1;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76566810 | 76567010 | 76566810 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76567902 | 76568087 | 76567902 | ID=MS.gene011204.t1.exon2;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76567902 | 76568087 | 76567902 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76568373 | 76568462 | 76568373 | ID=MS.gene011204.t1.exon3;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76568373 | 76568462 | 76568373 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76569331 | 76569528 | 76569331 | ID=MS.gene011204.t1.exon4;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76569331 | 76569528 | 76569331 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76569631 | 76569715 | 76569631 | ID=MS.gene011204.t1.exon5;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76569631 | 76569715 | 76569631 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76569837 | 76570003 | 76569837 | ID=MS.gene011204.t1.exon6;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76569837 | 76570003 | 76569837 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76570113 | 76570304 | 76570113 | ID=MS.gene011204.t1.exon7;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76570113 | 76570304 | 76570113 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76570382 | 76570495 | 76570382 | ID=MS.gene011204.t1.exon8;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76570382 | 76570495 | 76570382 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76570589 | 76570708 | 76570589 | ID=MS.gene011204.t1.exon9;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76570589 | 76570708 | 76570589 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76571275 | 76571397 | 76571275 | ID=MS.gene011204.t1.exon10;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76571275 | 76571397 | 76571275 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76571500 | 76571598 | 76571500 | ID=MS.gene011204.t1.exon11;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76571500 | 76571598 | 76571500 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76573568 | 76573624 | 76573568 | ID=MS.gene011204.t1.exon12;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76573568 | 76573624 | 76573568 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76573801 | 76574169 | 76573801 | ID=MS.gene011204.t1.exon13;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76573801 | 76574169 | 76573801 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76574273 | 76574353 | 76574273 | ID=MS.gene011204.t1.exon14;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76574273 | 76574353 | 76574273 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76574430 | 76574513 | 76574430 | ID=MS.gene011204.t1.exon15;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76574430 | 76574513 | 76574430 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| chr8.2 | exon | 76574683 | 76574799 | 76574683 | ID=MS.gene011204.t1.exon16;Parent=MS.gene011204.t1 |
| chr8.2 | CDS | 76574683 | 76574799 | 76574683 | ID=cds.MS.gene011204.t1;Parent=MS.gene011204.t1 |
| Gene Sequence |
| Protein sequence |
