Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98126.t1 | XP_003604121.1 | 97.4 | 762 | 10 | 1 | 1 | 752 | 1 | 762 | 0.00E+00 | 1588.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98126.t1 | Q9LRH8 | 93.7 | 758 | 38 | 1 | 1 | 748 | 1 | 758 | 0.0e+00 | 1533.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98126.t1 | Q8GSL7 | 97.4 | 762 | 10 | 1 | 1 | 752 | 1 | 762 | 0.0e+00 | 1588.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053114 | MS.gene98126 | 0.992903 | 3.57E-196 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene98126 | MS.gene053114 | PPI |
| MS.gene98126 | MS.gene000594 | PPI |
| MS.gene011204 | MS.gene98126 | PPI |
| MS.gene98129 | MS.gene98126 | PPI |
| MS.gene22278 | MS.gene98126 | PPI |
| MS.gene024711 | MS.gene98126 | PPI |
| MS.gene98126 | MS.gene034308 | PPI |
| MS.gene98126 | MS.gene50096 | PPI |
| MS.gene98126 | MS.gene37340 | PPI |
| MS.gene98126 | MS.gene21690 | PPI |
| MS.gene98126 | MS.gene034307 | PPI |
| MS.gene50096 | MS.gene98126 | PPI |
| MS.gene98126 | MS.gene07774 | PPI |
| MS.gene98126 | MS.gene21938 | PPI |
| MS.gene98126 | MS.gene87166 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98126.t1 | MTR_4g005190 | 97.375 | 762 | 10 | 1 | 1 | 752 | 1 | 762 | 0.0 | 1549 |
| MS.gene98126.t1 | MTR_4g005270 | 89.356 | 761 | 71 | 1 | 1 | 751 | 1 | 761 | 0.0 | 1436 |
| MS.gene98126.t1 | MTR_0013s0230 | 85.321 | 763 | 101 | 2 | 1 | 752 | 1 | 763 | 0.0 | 1394 |
| MS.gene98126.t1 | MTR_4g005190 | 98.505 | 669 | 10 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1383 |
| MS.gene98126.t1 | MTR_8g016975 | 78.609 | 762 | 153 | 1 | 1 | 752 | 1 | 762 | 0.0 | 1301 |
| MS.gene98126.t1 | MTR_8g016960 | 75.491 | 763 | 170 | 3 | 1 | 752 | 1 | 757 | 0.0 | 1241 |
| MS.gene98126.t1 | MTR_7g034535 | 84.195 | 696 | 99 | 2 | 68 | 752 | 3 | 698 | 0.0 | 1239 |
| MS.gene98126.t1 | MTR_8g017020 | 73.228 | 762 | 160 | 3 | 1 | 752 | 1 | 728 | 0.0 | 1190 |
| MS.gene98126.t1 | MTR_3g436160 | 82.222 | 675 | 106 | 2 | 84 | 748 | 27 | 697 | 0.0 | 1165 |
| MS.gene98126.t1 | MTR_6g093180 | 60.927 | 755 | 282 | 3 | 1 | 745 | 1 | 752 | 0.0 | 996 |
| MS.gene98126.t1 | MTR_6g034985 | 56.424 | 755 | 316 | 3 | 1 | 745 | 1 | 752 | 0.0 | 924 |
| MS.gene98126.t1 | MTR_5g008810 | 57.540 | 756 | 307 | 5 | 1 | 745 | 1 | 753 | 0.0 | 917 |
| MS.gene98126.t1 | MTR_6g035010 | 55.099 | 755 | 326 | 3 | 1 | 745 | 1 | 752 | 0.0 | 891 |
| MS.gene98126.t1 | MTR_6g093100 | 52.767 | 777 | 335 | 10 | 1 | 747 | 1 | 775 | 0.0 | 839 |
| MS.gene98126.t1 | MTR_6g088140 | 52.625 | 762 | 325 | 8 | 1 | 747 | 1 | 741 | 0.0 | 835 |
| MS.gene98126.t1 | MTR_7g062020 | 51.756 | 769 | 347 | 6 | 1 | 747 | 1 | 767 | 0.0 | 833 |
| MS.gene98126.t1 | MTR_6g088140 | 52.374 | 674 | 296 | 6 | 1 | 670 | 1 | 653 | 0.0 | 742 |
| MS.gene98126.t1 | MTR_8g016940 | 72.059 | 272 | 64 | 2 | 491 | 752 | 2 | 271 | 3.52e-137 | 405 |
| MS.gene98126.t1 | MTR_3g436170 | 79.412 | 68 | 14 | 0 | 1 | 68 | 1 | 68 | 1.37e-33 | 124 |
| MS.gene98126.t1 | MTR_8g017040 | 76.119 | 67 | 16 | 0 | 1 | 67 | 1 | 67 | 4.12e-33 | 124 |
| MS.gene98126.t1 | MTR_8g016570 | 73.016 | 63 | 17 | 0 | 685 | 747 | 28 | 90 | 1.01e-25 | 103 |
| MS.gene98126.t1 | MTR_8g016570 | 35.714 | 126 | 61 | 4 | 624 | 747 | 21 | 128 | 6.77e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98126.t1 | AT1G78950 | 74.704 | 759 | 181 | 2 | 1 | 748 | 10 | 768 | 0.0 | 1212 |
| MS.gene98126.t1 | AT1G78950 | 74.704 | 759 | 181 | 2 | 1 | 748 | 1 | 759 | 0.0 | 1211 |
| MS.gene98126.t1 | AT1G78955 | 73.650 | 759 | 189 | 2 | 1 | 748 | 1 | 759 | 0.0 | 1194 |
| MS.gene98126.t1 | AT1G78960 | 70.557 | 754 | 211 | 2 | 1 | 743 | 1 | 754 | 0.0 | 1164 |
| MS.gene98126.t1 | AT1G78960 | 70.557 | 754 | 211 | 2 | 1 | 743 | 1 | 754 | 0.0 | 1164 |
| MS.gene98126.t1 | AT1G78960 | 70.557 | 754 | 211 | 2 | 1 | 743 | 1 | 754 | 0.0 | 1164 |
| MS.gene98126.t1 | AT1G78960 | 70.401 | 723 | 203 | 2 | 1 | 712 | 1 | 723 | 0.0 | 1111 |
| MS.gene98126.t1 | AT1G66960 | 66.578 | 754 | 241 | 2 | 1 | 743 | 1 | 754 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G66960 | 66.578 | 754 | 241 | 2 | 1 | 743 | 1 | 754 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G66960 | 66.578 | 754 | 241 | 2 | 1 | 743 | 1 | 754 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G78970 | 69.841 | 756 | 214 | 3 | 1 | 745 | 1 | 753 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G78970 | 69.841 | 756 | 214 | 3 | 1 | 745 | 1 | 753 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G78970 | 69.841 | 756 | 214 | 3 | 1 | 745 | 1 | 753 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G66960 | 66.578 | 754 | 241 | 2 | 1 | 743 | 10 | 763 | 0.0 | 1102 |
| MS.gene98126.t1 | AT1G78955 | 74.026 | 693 | 170 | 1 | 66 | 748 | 2 | 694 | 0.0 | 1096 |
| MS.gene98126.t1 | AT1G78955 | 73.668 | 657 | 163 | 1 | 66 | 712 | 2 | 658 | 0.0 | 1031 |
| MS.gene98126.t1 | AT1G78955 | 74.380 | 605 | 155 | 0 | 66 | 670 | 2 | 606 | 0.0 | 968 |
| MS.gene98126.t1 | AT5G36150 | 56.464 | 758 | 319 | 2 | 1 | 747 | 1 | 758 | 0.0 | 961 |
| MS.gene98126.t1 | AT5G36150 | 56.464 | 758 | 319 | 2 | 1 | 747 | 1 | 758 | 0.0 | 961 |
| MS.gene98126.t1 | AT1G78960 | 71.476 | 603 | 162 | 1 | 151 | 743 | 1 | 603 | 0.0 | 948 |
| MS.gene98126.t1 | AT4G15370 | 57.124 | 758 | 303 | 5 | 1 | 743 | 1 | 751 | 0.0 | 945 |
| MS.gene98126.t1 | AT1G78500 | 58.355 | 766 | 300 | 5 | 1 | 747 | 1 | 766 | 0.0 | 944 |
| MS.gene98126.t1 | AT1G78500 | 58.355 | 766 | 300 | 5 | 1 | 747 | 1 | 766 | 0.0 | 944 |
| MS.gene98126.t1 | AT5G48010 | 57.236 | 767 | 306 | 6 | 1 | 746 | 1 | 766 | 0.0 | 943 |
| MS.gene98126.t1 | AT4G15370 | 56.899 | 761 | 303 | 6 | 1 | 743 | 1 | 754 | 0.0 | 941 |
| MS.gene98126.t1 | AT1G78955 | 76.027 | 584 | 130 | 1 | 175 | 748 | 1 | 584 | 0.0 | 941 |
| MS.gene98126.t1 | AT2G07050 | 57.784 | 758 | 306 | 5 | 1 | 747 | 1 | 755 | 0.0 | 933 |
| MS.gene98126.t1 | AT4G15340 | 57.860 | 757 | 303 | 4 | 1 | 741 | 1 | 757 | 0.0 | 932 |
| MS.gene98126.t1 | AT5G48010 | 56.845 | 767 | 301 | 7 | 1 | 746 | 1 | 758 | 0.0 | 925 |
| MS.gene98126.t1 | AT5G42600 | 56.126 | 759 | 320 | 4 | 1 | 747 | 1 | 758 | 0.0 | 917 |
| MS.gene98126.t1 | AT2G07050 | 58.371 | 663 | 263 | 4 | 96 | 747 | 4 | 664 | 0.0 | 840 |
| MS.gene98126.t1 | AT3G45130 | 53.369 | 757 | 333 | 7 | 1 | 743 | 1 | 751 | 0.0 | 799 |
| MS.gene98126.t1 | AT3G45130 | 53.369 | 757 | 333 | 7 | 1 | 743 | 1 | 751 | 0.0 | 799 |
| MS.gene98126.t1 | AT3G45130 | 53.369 | 757 | 333 | 7 | 1 | 743 | 1 | 751 | 0.0 | 799 |
| MS.gene98126.t1 | AT3G45130 | 53.369 | 757 | 333 | 7 | 1 | 743 | 1 | 751 | 0.0 | 799 |
| MS.gene98126.t1 | AT3G45130 | 53.369 | 757 | 333 | 7 | 1 | 743 | 1 | 751 | 0.0 | 799 |
| MS.gene98126.t1 | AT3G29255 | 50.132 | 758 | 307 | 6 | 2 | 747 | 6 | 704 | 0.0 | 790 |
| MS.gene98126.t1 | AT4G15340 | 57.496 | 567 | 235 | 3 | 1 | 561 | 1 | 567 | 0.0 | 697 |
| MS.gene98126.t1 | AT1G78480 | 44.521 | 146 | 49 | 3 | 71 | 200 | 48 | 177 | 1.70e-29 | 116 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGAATCATATAACCTTTC+TGG | 0.131846 | 4.1:+89393079 | None:intergenic |
| TAATAAATACGAACCTTCTT+TGG | 0.178051 | 4.1:+89392336 | None:intergenic |
| TTAATTATTGCAGAGTAAAA+AGG | 0.189557 | 4.1:-89392852 | MS.gene98126:intron |
| ATCTCTTTGCGATGCTCTTT+TGG | 0.190318 | 4.1:+89395221 | None:intergenic |
| TTTGTTTCACTTATGGTTCT+TGG | 0.208708 | 4.1:-89392488 | MS.gene98126:CDS |
| ACATACTGCATGGGCTCTTA+TGG | 0.219444 | 4.1:-89392198 | MS.gene98126:CDS |
| CTTTGATACAAGATCTGATA+TGG | 0.229253 | 4.1:-89394316 | MS.gene98126:CDS |
| TCTTCTTCACTACCTGCTTC+TGG | 0.268680 | 4.1:+89398837 | None:intergenic |
| CAATGTCTTGTTGTCGCTTC+AGG | 0.287718 | 4.1:-89393056 | MS.gene98126:intron |
| TGGGGAGTTTGTTTCACTTA+TGG | 0.288057 | 4.1:-89392495 | MS.gene98126:CDS |
| TTGTTTGTGCTGAATAAGTA+TGG | 0.296010 | 4.1:+89398891 | None:intergenic |
| ATGGTTCATGGTATGGAAAC+TGG | 0.321747 | 4.1:-89392515 | MS.gene98126:CDS |
| ATGTGCTCGAATCCAGTTTC+TGG | 0.336554 | 4.1:+89394962 | None:intergenic |
| AATAAATACGAACCTTCTTT+GGG | 0.337567 | 4.1:+89392337 | None:intergenic |
| CATACTGCATGGGCTCTTAT+GGG | 0.340268 | 4.1:-89392197 | MS.gene98126:intron |
| CTTGATGAAATCATGTCCTT+TGG | 0.340627 | 4.1:+89393700 | None:intergenic |
| CAAAACCAGCATCCCATTCT+TGG | 0.352418 | 4.1:+89393777 | None:intergenic |
| CAGGTTACAGAGAACCCTTC+TGG | 0.354363 | 4.1:-89393346 | MS.gene98126:CDS |
| GTCAATACAATGCAGAGTTT+TGG | 0.366348 | 4.1:-89393803 | MS.gene98126:intron |
| CAGGTTCGATTTCATCATTT+AGG | 0.371564 | 4.1:+89393729 | None:intergenic |
| TCTGACATCCACAAGTAATC+TGG | 0.375987 | 4.1:+89393961 | None:intergenic |
| ATCTCTTTCTTCCTATGCCC+TGG | 0.383363 | 4.1:+89392591 | None:intergenic |
| CAGAGAGAGGATGGTGGGTG+GGG | 0.396519 | 4.1:-89392378 | MS.gene98126:CDS |
| TATTATGTATGCTTGCTTGT+TGG | 0.398640 | 4.1:-89394032 | MS.gene98126:CDS |
| ATTATGTATGCTTGCTTGTT+GGG | 0.399627 | 4.1:-89394031 | MS.gene98126:CDS |
| AGAGAGAGGATGGTGGGTGG+GGG | 0.400405 | 4.1:-89392377 | MS.gene98126:CDS |
| AACTTTAAGCAAACAATAGA+TGG | 0.401450 | 4.1:-89396537 | MS.gene98126:CDS |
| TATGCTTCATTGTAACTTCA+AGG | 0.403560 | 4.1:+89394222 | None:intergenic |
| TATATATGTATGCGAATTCT+CGG | 0.404110 | 4.1:-89395026 | MS.gene98126:CDS |
| CACTGGTTTGCAATGCTGTT+AGG | 0.404141 | 4.1:+89396442 | None:intergenic |
| AAGATGTGGAAGCTGAAGAT+AGG | 0.409039 | 4.1:-89398930 | MS.gene98126:CDS |
| TATGGTTCTTGGTTTGCTCT+TGG | 0.409666 | 4.1:-89392477 | MS.gene98126:CDS |
| AACCATTGGGTGTGTGGAAA+AGG | 0.412577 | 4.1:-89394168 | MS.gene98126:intron |
| TACAAACAGCCGATGGTTCA+TGG | 0.415211 | 4.1:-89392527 | MS.gene98126:CDS |
| TTTGCGAATAGCAGCGCAAT+TGG | 0.416657 | 4.1:+89392425 | None:intergenic |
| GTGTCACATATATACCTTCA+TGG | 0.418279 | 4.1:-89394935 | MS.gene98126:CDS |
| CTTGTGCTAGAGCCAGAAAC+TGG | 0.419488 | 4.1:-89394974 | MS.gene98126:CDS |
| GAGAGAGGATGGTGGGTGGG+GGG | 0.421109 | 4.1:-89392376 | MS.gene98126:CDS |
| CTTGGTGGTTTAGCAGCTGC+TGG | 0.433156 | 4.1:-89392459 | MS.gene98126:CDS |
| TGAAGAATGAAGATGGAGGA+TGG | 0.433957 | 4.1:-89395097 | MS.gene98126:intron |
| AGATACTTGGTGTATTTGAT+TGG | 0.437583 | 4.1:-89394812 | MS.gene98126:CDS |
| GGTAAATATCTCTATACATT+GGG | 0.445154 | 4.1:+89391576 | None:intergenic |
| GGTTCTTGGTTTGCTCTTGG+TGG | 0.447161 | 4.1:-89392474 | MS.gene98126:CDS |
| ACCAGAAAGGTTATATGATT+CGG | 0.449257 | 4.1:-89393080 | MS.gene98126:CDS |
| AGCCCTGCGGTGACCTCCTA+TGG | 0.452069 | 4.1:-89398758 | MS.gene98126:CDS |
| TTCTTGTAAGCATCTCCATT+TGG | 0.455730 | 4.1:+89394000 | None:intergenic |
| AGGATTGAGATGAACCTGTT+GGG | 0.456514 | 4.1:+89392079 | None:intergenic |
| TCATTTCTTCCTATGCATCC+AGG | 0.456615 | 4.1:-89394747 | MS.gene98126:intron |
| TTGTTCAAGAAGCTATATCC+AGG | 0.467138 | 4.1:-89392609 | MS.gene98126:CDS |
| AGAAGGCGATTGGCCCCAAC+AGG | 0.467418 | 4.1:-89392093 | MS.gene98126:intron |
| CTTGGTGTATTTGATTGGTT+GGG | 0.470681 | 4.1:-89394807 | MS.gene98126:CDS |
| ACGCCATAGGAGGTCACCGC+AGG | 0.471668 | 4.1:+89398755 | None:intergenic |
| ATGCCTATGTCTTACTTGTA+CGG | 0.475296 | 4.1:-89394576 | MS.gene98126:CDS |
| AGAATTAAACCTGGATGCAT+AGG | 0.479526 | 4.1:+89394738 | None:intergenic |
| TAGAGATATTTACCCCTTGT+GGG | 0.480496 | 4.1:-89391567 | MS.gene98126:CDS |
| TTTCTATGACAACAGATTCA+AGG | 0.480723 | 4.1:-89398784 | MS.gene98126:CDS |
| TCATGTCCTTTGGCAAGTGC+AGG | 0.480763 | 4.1:+89393710 | None:intergenic |
| CTATCTTTCAAGCCCAAAGA+AGG | 0.480841 | 4.1:-89392349 | MS.gene98126:intron |
| AGCGGGCCAATGGCCATCAC+TGG | 0.481173 | 4.1:+89396425 | None:intergenic |
| TCCAGTTAAATCACAGTGGA+AGG | 0.484707 | 4.1:+89391512 | None:intergenic |
| CAAACCTTCAGCGGTGCAAT+CGG | 0.485259 | 4.1:+89393246 | None:intergenic |
| ATGCATCGTCATATTTCTAA+AGG | 0.486909 | 4.1:-89393310 | MS.gene98126:CDS |
| ACTTGGTGTATTTGATTGGT+TGG | 0.489744 | 4.1:-89394808 | MS.gene98126:CDS |
| CTGCGATTTGAGCGGGCCAA+TGG | 0.490121 | 4.1:+89396415 | None:intergenic |
| GGTAGCCAAGAATGGGATGC+TGG | 0.490155 | 4.1:-89393782 | MS.gene98126:CDS |
| AATAGTCGATACTTAACCAT+TGG | 0.492356 | 4.1:-89394182 | MS.gene98126:CDS |
| GAAGAATGAAGATGGAGGAT+GGG | 0.493389 | 4.1:-89395096 | MS.gene98126:intron |
| AAAAGGGTGGTTTGGCAGCA+TGG | 0.493594 | 4.1:-89392835 | MS.gene98126:CDS |
| TTGTACGGGAAGAGATTTGT+GGG | 0.493699 | 4.1:-89394561 | MS.gene98126:CDS |
| GCAGCACGATGGAGAGGAGT+AGG | 0.495145 | 4.1:+89392143 | None:intergenic |
| TTGCACCGCTGAAGGTTTGA+AGG | 0.495837 | 4.1:-89393242 | MS.gene98126:intron |
| GTCATATTTCTAAAGGCTCA+TGG | 0.498248 | 4.1:-89393303 | MS.gene98126:CDS |
| ACAGAGAGAGGATGGTGGGT+GGG | 0.500291 | 4.1:-89392379 | MS.gene98126:CDS |
| GCATTGTCTTGACCGCCATC+AGG | 0.500377 | 4.1:+89394996 | None:intergenic |
| AAGAATGAAGATGGAGGATG+GGG | 0.503155 | 4.1:-89395095 | MS.gene98126:CDS |
| CCGAGCCACTTCTCACCCGC+TGG | 0.510505 | 4.1:-89394274 | MS.gene98126:CDS |
| CATATCAGATCTTGTATCAA+AGG | 0.511080 | 4.1:+89394317 | None:intergenic |
| CTGACATCCACAAGTAATCT+GGG | 0.512251 | 4.1:+89393962 | None:intergenic |
| ATTGCTCATCAATTCTCAGT+TGG | 0.513882 | 4.1:-89392117 | MS.gene98126:CDS |
| TTTGATACAAGATCTGATAT+GGG | 0.514002 | 4.1:-89394315 | MS.gene98126:CDS |
| GATGGCGTGAAGATAGAAGA+TGG | 0.515640 | 4.1:-89396519 | MS.gene98126:CDS |
| AGAGGACCTGCGATTTGAGC+GGG | 0.516769 | 4.1:+89396408 | None:intergenic |
| CTCAGTTGGAAGAAGGCGAT+TGG | 0.517378 | 4.1:-89392103 | MS.gene98126:CDS |
| TCAGATCTTGTATCAAAGGA+TGG | 0.518498 | 4.1:+89394321 | None:intergenic |
| CTTGTACGGGAAGAGATTTG+TGG | 0.520126 | 4.1:-89394562 | MS.gene98126:CDS |
| ATCAATTCTCAGTTGGAAGA+AGG | 0.522872 | 4.1:-89392110 | MS.gene98126:CDS |
| TTGGCAGCATGGGAGCCCGC+AGG | 0.523182 | 4.1:-89392824 | MS.gene98126:CDS |
| CAAGGGTCCCAGATTACTTG+TGG | 0.524548 | 4.1:-89393969 | MS.gene98126:CDS |
| GGGTAAATATCTCTATACAT+TGG | 0.526077 | 4.1:+89391575 | None:intergenic |
| CCGCTGGCCTTTCAACAAGC+TGG | 0.526541 | 4.1:-89394258 | MS.gene98126:CDS |
| ACAGCCGATGGTTCATGGTA+TGG | 0.527570 | 4.1:-89392522 | MS.gene98126:CDS |
| ATAGTCGATACTTAACCATT+GGG | 0.531051 | 4.1:-89394181 | MS.gene98126:CDS |
| TGCCTATGTCTTACTTGTAC+GGG | 0.531091 | 4.1:-89394575 | MS.gene98126:CDS |
| AAAGGGTGGTTTGGCAGCAT+GGG | 0.531153 | 4.1:-89392834 | MS.gene98126:CDS |
| TGCAAACCAGTGATGGCCAT+TGG | 0.531457 | 4.1:-89396431 | MS.gene98126:CDS |
| CAGATCTTGTATCAAAGGAT+GGG | 0.531784 | 4.1:+89394322 | None:intergenic |
| AACCACTCTTGAGCTCCTGC+GGG | 0.532584 | 4.1:+89392809 | None:intergenic |
| CAGCTTGTTGAAAGGCCAGC+GGG | 0.533343 | 4.1:+89394259 | None:intergenic |
| TGTCACATATATACCTTCAT+GGG | 0.534237 | 4.1:-89394934 | MS.gene98126:CDS |
| TAACCACTCTTGAGCTCCTG+CGG | 0.534900 | 4.1:+89392808 | None:intergenic |
| CATTGGCCCGCTCAAATCGC+AGG | 0.535192 | 4.1:-89396414 | MS.gene98126:CDS |
| ATGTTGCCTCCAGAGATTGT+GGG | 0.536709 | 4.1:-89393115 | MS.gene98126:CDS |
| CATGAATATGTTGAGTGCAC+TGG | 0.536807 | 4.1:-89392654 | MS.gene98126:CDS |
| TGATTTCATCAAGAAATCTC+AGG | 0.542468 | 4.1:-89393690 | MS.gene98126:intron |
| GATTTCATCATTTAGGTTAG+CGG | 0.544741 | 4.1:+89393736 | None:intergenic |
| TATTTATGGCAGGAAATCAC+AGG | 0.544762 | 4.1:-89391629 | MS.gene98126:intron |
| ATAGAGATATTTACCCCTTG+TGG | 0.545304 | 4.1:-89391568 | MS.gene98126:CDS |
| CCTCTCTCTGTGTTGTGAGA+AGG | 0.545702 | 4.1:+89392391 | None:intergenic |
| AGCGGCAAGCAAAGCTTGAA+CGG | 0.546876 | 4.1:+89393754 | None:intergenic |
| TGGTTCATGGTATGGAAACT+GGG | 0.547996 | 4.1:-89392514 | MS.gene98126:CDS |
| TGGAAGCTGAAGATAGGAGA+GGG | 0.548862 | 4.1:-89398924 | MS.gene98126:CDS |
| GAAGGAAGGATCCAAAACTC+AGG | 0.548916 | 4.1:+89394768 | None:intergenic |
| TCCATGGTCTTGATCGGAGA+AGG | 0.549309 | 4.1:+89393279 | None:intergenic |
| TACTTGTGGATGTCAGAAGA+TGG | 0.551571 | 4.1:-89393955 | MS.gene98126:CDS |
| TTCAATGAATCGAACTGCCT+CGG | 0.553806 | 4.1:+89392554 | None:intergenic |
| TGGAACCCGTCTACGATACT+CGG | 0.556212 | 4.1:+89391538 | None:intergenic |
| AATGTTGCCTCCAGAGATTG+TGG | 0.556294 | 4.1:-89393116 | MS.gene98126:CDS |
| TCTCCGATCAAGACCATGGA+TGG | 0.556637 | 4.1:-89393276 | MS.gene98126:CDS |
| ATTTAATTGCAGCTAAAATG+TGG | 0.557315 | 4.1:-89394620 | MS.gene98126:intron |
| TTTCTGACCAGCTTGTTGAA+AGG | 0.558711 | 4.1:+89394251 | None:intergenic |
| AGCAGGTAGTGAAGAAGAGA+GGG | 0.559238 | 4.1:-89398832 | MS.gene98126:CDS |
| ATGCTTCATTGTAACTTCAA+GGG | 0.560576 | 4.1:+89394223 | None:intergenic |
| AATCGGAAACTTGCCATCCA+TGG | 0.561165 | 4.1:+89393263 | None:intergenic |
| ATGATTTGCCTATAGATACT+TGG | 0.562224 | 4.1:-89394825 | MS.gene98126:intron |
| GAATACGGAATCAAGATGTC+CGG | 0.564924 | 4.1:+89395244 | None:intergenic |
| TTGCCATCCATGGTCTTGAT+CGG | 0.566795 | 4.1:+89393273 | None:intergenic |
| ATACTCTTAAAATCTCCAGA+AGG | 0.567112 | 4.1:+89393331 | None:intergenic |
| CCAATGTTGTACATACTGCA+TGG | 0.568294 | 4.1:-89392208 | MS.gene98126:CDS |
| GGATGCATAGGAAGAAATGA+AGG | 0.572300 | 4.1:+89394750 | None:intergenic |
| GTTTCCGATTGCACCGCTGA+AGG | 0.573268 | 4.1:-89393250 | MS.gene98126:CDS |
| ATACTTAACCATTGGGTGTG+TGG | 0.573310 | 4.1:-89394174 | MS.gene98126:CDS |
| AAAGGCCAGCGGGTGAGAAG+TGG | 0.574573 | 4.1:+89394269 | None:intergenic |
| TGGGAGTATGATCCAGAAGC+AGG | 0.576042 | 4.1:-89398849 | MS.gene98126:CDS |
| AGAAGCTATATCCAGGGCAT+AGG | 0.579101 | 4.1:-89392602 | MS.gene98126:CDS |
| AAGGAAGGATCCAAAACTCA+GGG | 0.579130 | 4.1:+89394769 | None:intergenic |
| ACAGCATTGCAAACCAGTGA+TGG | 0.580442 | 4.1:-89396438 | MS.gene98126:CDS |
| CTCACAACACAGAGAGAGGA+TGG | 0.580995 | 4.1:-89392387 | MS.gene98126:CDS |
| GTGGAAGCTGAAGATAGGAG+AGG | 0.581318 | 4.1:-89398925 | MS.gene98126:CDS |
| CCAGCGGGTGAGAAGTGGCT+CGG | 0.581720 | 4.1:+89394274 | None:intergenic |
| CAATGTTGTACATACTGCAT+GGG | 0.582226 | 4.1:-89392207 | MS.gene98126:CDS |
| CACAGAGAGAGGATGGTGGG+TGG | 0.585302 | 4.1:-89392380 | MS.gene98126:CDS |
| TAAATCACAGTGGAAGGCAA+TGG | 0.589251 | 4.1:+89391518 | None:intergenic |
| CTCTAGCCGAGTATCGTAGA+CGG | 0.589327 | 4.1:-89391544 | MS.gene98126:CDS |
| AGCCCGCAGGAGCTCAAGAG+TGG | 0.590345 | 4.1:-89392811 | MS.gene98126:CDS |
| TGACTCTCACCTTTGCACAT+AGG | 0.591496 | 4.1:+89394454 | None:intergenic |
| GACTATTCTCATCCTCGTAG+TGG | 0.592078 | 4.1:+89394198 | None:intergenic |
| AGATCTTGTATCAAAGGATG+GGG | 0.592595 | 4.1:+89394323 | None:intergenic |
| AATGTGGTGTTATTGTCGAT+TGG | 0.592848 | 4.1:-89394604 | MS.gene98126:CDS |
| ATCGAACCTGCACTTGCCAA+AGG | 0.594240 | 4.1:-89393716 | MS.gene98126:CDS |
| CCTTCTCACAACACAGAGAG+AGG | 0.594275 | 4.1:-89392391 | MS.gene98126:CDS |
| TACTCTTAAAATCTCCAGAA+GGG | 0.594668 | 4.1:+89393332 | None:intergenic |
| CTATACCTTCAAACCTTCAG+CGG | 0.599781 | 4.1:+89393237 | None:intergenic |
| GGATTGAGATGAACCTGTTG+GGG | 0.601251 | 4.1:+89392080 | None:intergenic |
| GCAACGACAACATTGAGAAG+AGG | 0.605059 | 4.1:-89396474 | MS.gene98126:CDS |
| CAACACAGAGAGAGGATGGT+GGG | 0.605076 | 4.1:-89392383 | MS.gene98126:CDS |
| ACCTTCTCCGATCAAGACCA+TGG | 0.607623 | 4.1:-89393280 | MS.gene98126:CDS |
| GTTAAGTGCAGTGCAAAACA+TGG | 0.609215 | 4.1:+89395049 | None:intergenic |
| AAGCAGGTAGTGAAGAAGAG+AGG | 0.609374 | 4.1:-89398833 | MS.gene98126:CDS |
| CAGCACGATGGAGAGGAGTA+GGG | 0.609931 | 4.1:+89392144 | None:intergenic |
| TGTTCAAGAAGCTATATCCA+GGG | 0.610050 | 4.1:-89392608 | MS.gene98126:CDS |
| CCATGCAGTATGTACAACAT+TGG | 0.611660 | 4.1:+89392208 | None:intergenic |
| CTTACAAGAAGCATCTTGCA+AGG | 0.611846 | 4.1:-89393987 | MS.gene98126:CDS |
| TGTATGCGAATTCTCGGAGA+AGG | 0.611987 | 4.1:-89395020 | MS.gene98126:CDS |
| CGCCATAGGAGGTCACCGCA+GGG | 0.616450 | 4.1:+89398756 | None:intergenic |
| ATGTATGCTTGCTTGTTGGG+TGG | 0.616625 | 4.1:-89394028 | MS.gene98126:CDS |
| CAGATATATGTACCTCTCGA+AGG | 0.616858 | 4.1:-89392239 | MS.gene98126:CDS |
| AGAAGATGGAATGACCATGC+AGG | 0.618756 | 4.1:-89393941 | MS.gene98126:intron |
| TGTTGCCTCCAGAGATTGTG+GGG | 0.619714 | 4.1:-89393114 | MS.gene98126:CDS |
| TGGTTTGCAATGCTGTTAGG+TGG | 0.621732 | 4.1:+89396445 | None:intergenic |
| AGAAACTGGATTCGAGCACA+TGG | 0.622003 | 4.1:-89394960 | MS.gene98126:CDS |
| AGGATGGGGACTACACATTG+AGG | 0.622564 | 4.1:-89395081 | MS.gene98126:CDS |
| ATCACGTCACCTATGTGCAA+AGG | 0.624609 | 4.1:-89394463 | MS.gene98126:intron |
| TGTTGGGTGGAAGATCCAAA+TGG | 0.626156 | 4.1:-89394015 | MS.gene98126:CDS |
| GGATGGGGACTACACATTGA+GGG | 0.630262 | 4.1:-89395080 | MS.gene98126:CDS |
| GTACCTGAAAACGCCATAGG+AGG | 0.630439 | 4.1:+89398745 | None:intergenic |
| TGTAAGATGAGTGGTGTGAT+CGG | 0.631563 | 4.1:+89394537 | None:intergenic |
| TCTAGCCGAGTATCGTAGAC+GGG | 0.631575 | 4.1:-89391543 | MS.gene98126:CDS |
| TTGGATCGGCTTCCTTCGAG+AGG | 0.631858 | 4.1:+89392227 | None:intergenic |
| TCTCTCAACTGTAAGATGAG+TGG | 0.632296 | 4.1:+89394528 | None:intergenic |
| GGGAAAAGATGGAACCAGAA+AGG | 0.633031 | 4.1:-89393093 | MS.gene98126:CDS |
| GCATAGGAAGAAATGAAGGA+AGG | 0.633205 | 4.1:+89394754 | None:intergenic |
| ATTCTCGGAGAAGGACCTGA+TGG | 0.634214 | 4.1:-89395011 | MS.gene98126:CDS |
| CAGTATGTACAACATTGGAT+CGG | 0.635228 | 4.1:+89392213 | None:intergenic |
| TTCCCGTACAAGTAAGACAT+AGG | 0.635237 | 4.1:+89394573 | None:intergenic |
| GTTTCCATACCATGAACCAT+CGG | 0.636194 | 4.1:+89392518 | None:intergenic |
| ATACTCGGCTAGAGCCCACA+AGG | 0.640192 | 4.1:+89391553 | None:intergenic |
| TAGGTACCTGAAAACGCCAT+AGG | 0.640359 | 4.1:+89398742 | None:intergenic |
| TAGAGGACCTGCGATTTGAG+CGG | 0.649619 | 4.1:+89396407 | None:intergenic |
| GGTGATAGTAAATGTAACGA+AGG | 0.654183 | 4.1:+89395198 | None:intergenic |
| AGGAAGGATCCAAAACTCAG+GGG | 0.654693 | 4.1:+89394770 | None:intergenic |
| GATAGAGAATTTCATCTCCG+AGG | 0.658691 | 4.1:-89392571 | MS.gene98126:CDS |
| TAGTAAGTACTCACCAAGGG+AGG | 0.660175 | 4.1:+89396375 | None:intergenic |
| TTACAAGAAGCATCTTGCAA+GGG | 0.667050 | 4.1:-89393986 | MS.gene98126:CDS |
| GAAGATATACAAACAGCCGA+TGG | 0.667706 | 4.1:-89392534 | MS.gene98126:CDS |
| ACAACACAGAGAGAGGATGG+TGG | 0.668505 | 4.1:-89392384 | MS.gene98126:CDS |
| GTCACATATATACCTTCATG+GGG | 0.669911 | 4.1:-89394933 | MS.gene98126:CDS |
| CTCGGAGAAGGACCTGATGG+CGG | 0.670908 | 4.1:-89395008 | MS.gene98126:CDS |
| GGAAGGATCCAAAACTCAGG+GGG | 0.672851 | 4.1:+89394771 | None:intergenic |
| CCAGCTTGTTGAAAGGCCAG+CGG | 0.681628 | 4.1:+89394258 | None:intergenic |
| GGTTCATGGTATGGAAACTG+GGG | 0.686882 | 4.1:-89392513 | MS.gene98126:CDS |
| TGTTTGTGCTGAATAAGTAT+GGG | 0.691594 | 4.1:+89398892 | None:intergenic |
| TACTCGGCTAGAGCCCACAA+GGG | 0.715735 | 4.1:+89391554 | None:intergenic |
| AACTGGATTCGAGCACATGG+TGG | 0.726743 | 4.1:-89394957 | MS.gene98126:CDS |
| ACTCGGCTAGAGCCCACAAG+GGG | 0.728980 | 4.1:+89391555 | None:intergenic |
| AGATTCAAGGTCAAGCCCTG+CGG | 0.734581 | 4.1:-89398771 | MS.gene98126:CDS |
| GTTGCCTCCAGAGATTGTGG+GGG | 0.736124 | 4.1:-89393113 | MS.gene98126:CDS |
| AATGAAGCATATCCACTACG+AGG | 0.801868 | 4.1:-89394210 | MS.gene98126:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 89391517 | 89398949 | 89391517 | ID=MS.gene98126 |
| chr4.1 | mRNA | 89391517 | 89398949 | 89391517 | ID=MS.gene98126.t1;Parent=MS.gene98126 |
| chr4.1 | exon | 89398749 | 89398949 | 89398749 | ID=MS.gene98126.t1.exon1;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89398749 | 89398949 | 89398749 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89396389 | 89396574 | 89396389 | ID=MS.gene98126.t1.exon2;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89396389 | 89396574 | 89396389 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89395196 | 89395285 | 89395196 | ID=MS.gene98126.t1.exon3;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89395196 | 89395285 | 89395196 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89394917 | 89395114 | 89394917 | ID=MS.gene98126.t1.exon4;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89394917 | 89395114 | 89394917 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89394748 | 89394832 | 89394748 | ID=MS.gene98126.t1.exon5;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89394748 | 89394832 | 89394748 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89394464 | 89394630 | 89394464 | ID=MS.gene98126.t1.exon6;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89394464 | 89394630 | 89394464 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89394169 | 89394360 | 89394169 | ID=MS.gene98126.t1.exon7;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89394169 | 89394360 | 89394169 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89393942 | 89394055 | 89393942 | ID=MS.gene98126.t1.exon8;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89393942 | 89394055 | 89393942 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89393691 | 89393810 | 89393691 | ID=MS.gene98126.t1.exon9;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89393691 | 89393810 | 89393691 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89393243 | 89393365 | 89393243 | ID=MS.gene98126.t1.exon10;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89393243 | 89393365 | 89393243 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89393057 | 89393155 | 89393057 | ID=MS.gene98126.t1.exon11;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89393057 | 89393155 | 89393057 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89392805 | 89392861 | 89392805 | ID=MS.gene98126.t1.exon12;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89392805 | 89392861 | 89392805 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89392350 | 89392718 | 89392350 | ID=MS.gene98126.t1.exon13;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89392350 | 89392718 | 89392350 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89392198 | 89392258 | 89392198 | ID=MS.gene98126.t1.exon14;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89392198 | 89392258 | 89392198 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89392094 | 89392167 | 89392094 | ID=MS.gene98126.t1.exon15;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89392094 | 89392167 | 89392094 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| chr4.1 | exon | 89391517 | 89391639 | 89391517 | ID=MS.gene98126.t1.exon16;Parent=MS.gene98126.t1 |
| chr4.1 | CDS | 89391517 | 89391639 | 89391517 | ID=cds.MS.gene98126.t1;Parent=MS.gene98126.t1 |
| Gene Sequence |
| Protein sequence |
