Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000594.t1 | XP_024634122.1 | 91 | 758 | 64 | 1 | 1 | 758 | 1 | 754 | 0.00E+00 | 1493 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000594.t1 | Q9MB42 | 86.1 | 758 | 105 | 0 | 1 | 758 | 1 | 758 | 0.0e+00 | 1438.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000594.t1 | A0A0R0J895 | 86.7 | 758 | 101 | 0 | 1 | 758 | 1 | 758 | 0.0e+00 | 1440.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22278 | MS.gene000594 | PPI |
| MS.gene98126 | MS.gene000594 | PPI |
| MS.gene024711 | MS.gene000594 | PPI |
| MS.gene034307 | MS.gene000594 | PPI |
| MS.gene21938 | MS.gene000594 | PPI |
| MS.gene053114 | MS.gene000594 | PPI |
| MS.gene50096 | MS.gene000594 | PPI |
| MS.gene21690 | MS.gene000594 | PPI |
| MS.gene37340 | MS.gene000594 | PPI |
| MS.gene034308 | MS.gene000594 | PPI |
| MS.gene011204 | MS.gene000594 | PPI |
| MS.gene98129 | MS.gene000594 | PPI |
| MS.gene07774 | MS.gene000594 | PPI |
| MS.gene87166 | MS.gene000594 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000594.t1 | MTR_4g005190 | 84.037 | 758 | 121 | 0 | 1 | 758 | 1 | 758 | 0.0 | 1372 |
| MS.gene000594.t1 | MTR_4g005270 | 80.871 | 758 | 145 | 0 | 1 | 758 | 1 | 758 | 0.0 | 1332 |
| MS.gene000594.t1 | MTR_0013s0230 | 80.501 | 759 | 147 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1324 |
| MS.gene000594.t1 | MTR_8g016975 | 78.100 | 758 | 166 | 0 | 1 | 758 | 1 | 758 | 0.0 | 1288 |
| MS.gene000594.t1 | MTR_3g436160 | 90.667 | 675 | 59 | 1 | 84 | 758 | 27 | 697 | 0.0 | 1273 |
| MS.gene000594.t1 | MTR_8g016960 | 74.670 | 758 | 185 | 2 | 1 | 757 | 1 | 752 | 0.0 | 1224 |
| MS.gene000594.t1 | MTR_4g005190 | 84.155 | 669 | 106 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1212 |
| MS.gene000594.t1 | MTR_7g034535 | 81.187 | 691 | 129 | 1 | 68 | 757 | 3 | 693 | 0.0 | 1197 |
| MS.gene000594.t1 | MTR_8g017020 | 72.955 | 758 | 171 | 2 | 1 | 758 | 1 | 724 | 0.0 | 1183 |
| MS.gene000594.t1 | MTR_6g093180 | 61.060 | 755 | 291 | 2 | 1 | 755 | 1 | 752 | 0.0 | 998 |
| MS.gene000594.t1 | MTR_6g034985 | 57.881 | 755 | 315 | 2 | 1 | 755 | 1 | 752 | 0.0 | 948 |
| MS.gene000594.t1 | MTR_5g008810 | 57.937 | 756 | 314 | 4 | 1 | 755 | 1 | 753 | 0.0 | 913 |
| MS.gene000594.t1 | MTR_6g035010 | 54.762 | 756 | 339 | 2 | 1 | 756 | 1 | 753 | 0.0 | 894 |
| MS.gene000594.t1 | MTR_7g062020 | 52.666 | 769 | 350 | 5 | 1 | 757 | 1 | 767 | 0.0 | 841 |
| MS.gene000594.t1 | MTR_6g093100 | 52.252 | 777 | 349 | 9 | 1 | 757 | 1 | 775 | 0.0 | 827 |
| MS.gene000594.t1 | MTR_6g088140 | 52.493 | 762 | 336 | 7 | 1 | 757 | 1 | 741 | 0.0 | 825 |
| MS.gene000594.t1 | MTR_6g088140 | 51.484 | 674 | 302 | 6 | 1 | 670 | 1 | 653 | 0.0 | 719 |
| MS.gene000594.t1 | MTR_8g016940 | 72.075 | 265 | 72 | 1 | 491 | 755 | 2 | 264 | 5.35e-137 | 405 |
| MS.gene000594.t1 | MTR_3g436170 | 97.059 | 68 | 2 | 0 | 1 | 68 | 1 | 68 | 6.57e-41 | 144 |
| MS.gene000594.t1 | MTR_8g017040 | 81.429 | 70 | 13 | 0 | 1 | 70 | 1 | 70 | 2.86e-35 | 130 |
| MS.gene000594.t1 | MTR_8g016570 | 69.841 | 63 | 19 | 0 | 695 | 757 | 28 | 90 | 3.99e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000594.t1 | AT1G78950 | 73.123 | 759 | 203 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1190 |
| MS.gene000594.t1 | AT1G78950 | 73.123 | 759 | 203 | 1 | 1 | 758 | 10 | 768 | 0.0 | 1189 |
| MS.gene000594.t1 | AT1G78955 | 72.069 | 759 | 211 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1173 |
| MS.gene000594.t1 | AT1G78960 | 70.027 | 754 | 225 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1150 |
| MS.gene000594.t1 | AT1G78960 | 70.027 | 754 | 225 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1150 |
| MS.gene000594.t1 | AT1G78960 | 70.027 | 754 | 225 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1150 |
| MS.gene000594.t1 | AT1G78960 | 70.124 | 723 | 215 | 1 | 1 | 722 | 1 | 723 | 0.0 | 1104 |
| MS.gene000594.t1 | AT1G66960 | 66.048 | 754 | 255 | 1 | 1 | 753 | 10 | 763 | 0.0 | 1098 |
| MS.gene000594.t1 | AT1G66960 | 66.048 | 754 | 255 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1097 |
| MS.gene000594.t1 | AT1G66960 | 66.048 | 754 | 255 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1097 |
| MS.gene000594.t1 | AT1G66960 | 66.048 | 754 | 255 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1097 |
| MS.gene000594.t1 | AT1G78970 | 68.386 | 756 | 235 | 2 | 1 | 755 | 1 | 753 | 0.0 | 1087 |
| MS.gene000594.t1 | AT1G78970 | 68.386 | 756 | 235 | 2 | 1 | 755 | 1 | 753 | 0.0 | 1087 |
| MS.gene000594.t1 | AT1G78970 | 68.386 | 756 | 235 | 2 | 1 | 755 | 1 | 753 | 0.0 | 1087 |
| MS.gene000594.t1 | AT1G78955 | 72.150 | 693 | 193 | 0 | 66 | 758 | 2 | 694 | 0.0 | 1074 |
| MS.gene000594.t1 | AT1G78955 | 72.146 | 657 | 183 | 0 | 66 | 722 | 2 | 658 | 0.0 | 1015 |
| MS.gene000594.t1 | AT1G78500 | 59.085 | 765 | 306 | 3 | 1 | 758 | 1 | 765 | 0.0 | 966 |
| MS.gene000594.t1 | AT1G78500 | 59.085 | 765 | 306 | 3 | 1 | 758 | 1 | 765 | 0.0 | 966 |
| MS.gene000594.t1 | AT5G36150 | 56.860 | 758 | 326 | 1 | 1 | 757 | 1 | 758 | 0.0 | 958 |
| MS.gene000594.t1 | AT5G36150 | 56.860 | 758 | 326 | 1 | 1 | 757 | 1 | 758 | 0.0 | 958 |
| MS.gene000594.t1 | AT4G15370 | 57.784 | 758 | 308 | 4 | 1 | 753 | 1 | 751 | 0.0 | 947 |
| MS.gene000594.t1 | AT4G15370 | 57.556 | 761 | 308 | 5 | 1 | 753 | 1 | 754 | 0.0 | 944 |
| MS.gene000594.t1 | AT1G78960 | 71.144 | 603 | 174 | 0 | 151 | 753 | 1 | 603 | 0.0 | 944 |
| MS.gene000594.t1 | AT4G15340 | 57.971 | 759 | 313 | 3 | 1 | 753 | 1 | 759 | 0.0 | 941 |
| MS.gene000594.t1 | AT2G07050 | 58.179 | 758 | 313 | 4 | 1 | 757 | 1 | 755 | 0.0 | 939 |
| MS.gene000594.t1 | AT5G48010 | 56.803 | 757 | 321 | 3 | 1 | 751 | 1 | 757 | 0.0 | 937 |
| MS.gene000594.t1 | AT1G78955 | 71.736 | 605 | 171 | 0 | 66 | 670 | 2 | 606 | 0.0 | 933 |
| MS.gene000594.t1 | AT1G78955 | 73.801 | 584 | 153 | 0 | 175 | 758 | 1 | 584 | 0.0 | 924 |
| MS.gene000594.t1 | AT5G48010 | 56.143 | 757 | 318 | 4 | 1 | 751 | 1 | 749 | 0.0 | 917 |
| MS.gene000594.t1 | AT5G42600 | 55.863 | 759 | 332 | 3 | 1 | 757 | 1 | 758 | 0.0 | 910 |
| MS.gene000594.t1 | AT2G07050 | 58.974 | 663 | 269 | 3 | 96 | 757 | 4 | 664 | 0.0 | 844 |
| MS.gene000594.t1 | AT3G45130 | 54.954 | 757 | 331 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene000594.t1 | AT3G45130 | 54.954 | 757 | 331 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene000594.t1 | AT3G45130 | 54.954 | 757 | 331 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene000594.t1 | AT3G45130 | 54.954 | 757 | 331 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene000594.t1 | AT3G45130 | 54.954 | 757 | 331 | 6 | 1 | 753 | 1 | 751 | 0.0 | 816 |
| MS.gene000594.t1 | AT3G29255 | 51.055 | 758 | 310 | 5 | 2 | 757 | 6 | 704 | 0.0 | 801 |
| MS.gene000594.t1 | AT4G15340 | 58.025 | 567 | 232 | 3 | 1 | 561 | 1 | 567 | 0.0 | 704 |
| MS.gene000594.t1 | AT1G78480 | 40.000 | 155 | 59 | 4 | 71 | 207 | 48 | 186 | 3.02e-25 | 104 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTATATCAACCGCTTTA+AGG | 0.106811 | 3.4:-29484973 | MS.gene000594:CDS |
| CGACCTCCTTTGGCGCTTTC+AGG | 0.109747 | 3.4:-29484937 | MS.gene000594:intron |
| ACTGAATCATATAACCTTTC+TGG | 0.125158 | 3.4:+29474378 | None:intergenic |
| TAGTAATTATTAACCTTATT+AGG | 0.148387 | 3.4:+29473443 | None:intergenic |
| CAAGGGTCCCTGATTACTTA+TGG | 0.195838 | 3.4:-29475246 | MS.gene000594:CDS |
| TGTCTAATCAACTTATTAAA+AGG | 0.202576 | 3.4:+29475542 | None:intergenic |
| TTTGCTTCATTTATGGTTCT+TGG | 0.206218 | 3.4:-29473595 | MS.gene000594:CDS |
| TGGGGAATTTGCTTCATTTA+TGG | 0.216369 | 3.4:-29473602 | MS.gene000594:CDS |
| CAGCTGTTTGTTTATCTTCC+AGG | 0.221193 | 3.4:+29473645 | None:intergenic |
| TATATATGTATGCGACTTCT+TGG | 0.224433 | 3.4:-29476385 | MS.gene000594:CDS |
| CACAGAAGATCTTGTATAAA+AGG | 0.232698 | 3.4:+29475608 | None:intergenic |
| CTCTTTGTGAGTATCGTAAA+AGG | 0.244968 | 3.4:-29471637 | MS.gene000594:CDS |
| TCAACCATTGCTCGCTCTTC+AGG | 0.245957 | 3.4:+29485011 | None:intergenic |
| AAGAATGAAGATGGAGGATT+AGG | 0.257127 | 3.4:-29476454 | MS.gene000594:CDS |
| ACCCAATGCCTCCTGAGTTT+TGG | 0.277341 | 3.4:-29476126 | MS.gene000594:CDS |
| CTATCTTTCAAGCCCTAATA+AGG | 0.286503 | 3.4:-29473456 | MS.gene000594:intron |
| AGTAATTATTAACCTTATTA+GGG | 0.297403 | 3.4:+29473444 | None:intergenic |
| ATACTTACTTCTAACCATTC+TGG | 0.303919 | 3.4:+29474165 | None:intergenic |
| CCCTGATTACTTATGGGTTT+CGG | 0.312663 | 3.4:-29475239 | MS.gene000594:CDS |
| ACTAACTTAATCGAGGAAAT+TGG | 0.325361 | 3.4:-29475032 | MS.gene000594:CDS |
| GCGATGCTCATGCGTGAATA+TGG | 0.336711 | 3.4:+29476628 | None:intergenic |
| TAATATCCTATTGTCTCTTC+AGG | 0.340793 | 3.4:-29474355 | MS.gene000594:intron |
| GGTTCTTGGTTGGCACTTAG+TGG | 0.343863 | 3.4:-29473581 | MS.gene000594:CDS |
| CAAGGAGAAGATGGTGGGTG+GGG | 0.350458 | 3.4:-29473485 | MS.gene000594:CDS |
| AAGGGTCCCTGATTACTTAT+GGG | 0.350527 | 3.4:-29475245 | MS.gene000594:CDS |
| AATTTCCTCGATTAAGTTAG+TGG | 0.355764 | 3.4:+29475034 | None:intergenic |
| GTCAATATAATGTAGAGTTT+TGG | 0.363077 | 3.4:-29475101 | MS.gene000594:intron |
| TCCGAAACCCATAAGTAATC+AGG | 0.364274 | 3.4:+29475238 | None:intergenic |
| ACTAATGACGACGGTGAAAA+GGG | 0.367175 | 3.4:-29476963 | MS.gene000594:CDS |
| ATGCCTATGTCTTACTTGTA+TGG | 0.368802 | 3.4:-29475869 | MS.gene000594:CDS |
| TGTTGCCTTCAGAGATTGTT+GGG | 0.369479 | 3.4:-29474413 | MS.gene000594:CDS |
| AGATACTTGGTGTATTTGAT+TGG | 0.371927 | 3.4:-29476159 | MS.gene000594:CDS |
| TTTATGCATGCTTGCTTGTT+GGG | 0.376565 | 3.4:-29475308 | MS.gene000594:CDS |
| AAGGAGAAGATGGTGGGTGG+GGG | 0.378617 | 3.4:-29473484 | MS.gene000594:CDS |
| CGGTTTAATTCATGCTGGTC+AGG | 0.382260 | 3.4:-29473242 | MS.gene000594:intron |
| TAGGTTAGAGACAACCCTTC+AGG | 0.382468 | 3.4:-29474666 | MS.gene000594:CDS |
| TATGCTTCATTGCTATTTGA+AGG | 0.384807 | 3.4:+29475513 | None:intergenic |
| TCTTCAGGAGTACCTGCATC+AGG | 0.398613 | 3.4:+29485026 | None:intergenic |
| TCACACCACATATTCTTTGT+TGG | 0.401050 | 3.4:+29477020 | None:intergenic |
| TTATTTGTGGTGAATATGTA+AGG | 0.406270 | 3.4:+29485080 | None:intergenic |
| AGCCATGTAGCGACCTCCTT+TGG | 0.407343 | 3.4:-29484947 | MS.gene000594:CDS |
| CATACGGCATGGGCTCTTCT+CGG | 0.415180 | 3.4:-29473262 | MS.gene000594:CDS |
| ATGGATCATGGTATGGAGCC+TGG | 0.417949 | 3.4:-29473622 | MS.gene000594:CDS |
| AGGAGAAGATGGTGGGTGGG+GGG | 0.422841 | 3.4:-29473483 | MS.gene000594:CDS |
| AACCATCGGGTGTGTGGAAA+AGG | 0.424236 | 3.4:-29475459 | MS.gene000594:intron |
| ATCCAAAACTCAGGAGGCAT+TGG | 0.425267 | 3.4:+29476124 | None:intergenic |
| AACTAATGACGACGGTGAAA+AGG | 0.426743 | 3.4:-29476964 | MS.gene000594:CDS |
| AGAATGAAGATGGAGGATTA+GGG | 0.427174 | 3.4:-29476453 | MS.gene000594:CDS |
| CTTCATTTATGGTTCTTGGT+TGG | 0.432041 | 3.4:-29473591 | MS.gene000594:CDS |
| AGAGGGTGACTGGCCACAAC+AGG | 0.432290 | 3.4:-29472417 | MS.gene000594:intron |
| TTCTTGAAAGCAACTCCATC+TGG | 0.432488 | 3.4:+29475277 | None:intergenic |
| AGAGATTGTTGGGGAAAAGA+TGG | 0.436295 | 3.4:-29474403 | MS.gene000594:CDS |
| CAGATATACATACCTCTTGA+AGG | 0.436997 | 3.4:-29473304 | MS.gene000594:CDS |
| CTTCTTGGAGAAGGGCCTAA+TGG | 0.440847 | 3.4:-29476370 | MS.gene000594:CDS |
| TGCAGACCAGCGATGGCCAT+TGG | 0.442972 | 3.4:-29476919 | MS.gene000594:CDS |
| TTTGTTCAAGAAATTATATC+CGG | 0.446765 | 3.4:-29473717 | MS.gene000594:CDS |
| AACCATTCTGGAGCTCCTGC+TGG | 0.448734 | 3.4:+29474177 | None:intergenic |
| GGATAGCTTATACATATTCA+TGG | 0.452335 | 3.4:-29475585 | MS.gene000594:CDS |
| GTGTTAGACATATACCTTCA+TGG | 0.460500 | 3.4:-29476294 | MS.gene000594:CDS |
| ATTGCGAATAGCAGCACAAT+TGG | 0.460661 | 3.4:+29473532 | None:intergenic |
| TAAAGCATGAATTGCCGATC+CGG | 0.463638 | 3.4:+29473742 | None:intergenic |
| TCATTTCTTCCTATGCATCC+AGG | 0.464951 | 3.4:-29476094 | MS.gene000594:intron |
| TCTCCCCACGAAGTTATTTG+TGG | 0.465222 | 3.4:+29485067 | None:intergenic |
| CTTAGTGGTTTAGCAGCTGC+TGG | 0.466030 | 3.4:-29473566 | MS.gene000594:CDS |
| AGGATTAGGGTTACATATTG+AGG | 0.466467 | 3.4:-29476440 | MS.gene000594:CDS |
| AGAAAGTGGATTCGTGATCA+TGG | 0.473995 | 3.4:-29476319 | MS.gene000594:CDS |
| TTGTATGGGAAGCGATTTGT+GGG | 0.474829 | 3.4:-29475854 | MS.gene000594:CDS |
| CTTGTATGGGAAGCGATTTG+TGG | 0.477333 | 3.4:-29475855 | MS.gene000594:CDS |
| TTAGCTGCGTGGGAGCCAGC+AGG | 0.478930 | 3.4:-29474192 | MS.gene000594:CDS |
| TTGTACTGCAGAAGGTTTGA+AGG | 0.479175 | 3.4:-29474562 | MS.gene000594:intron |
| CTCAGTCAGAAGAGGGTGAC+TGG | 0.482119 | 3.4:-29472427 | MS.gene000594:CDS |
| GCAGCACGATGAAGAGGAGC+AGG | 0.482918 | 3.4:+29472467 | None:intergenic |
| TACTTATGGGTTTCGGAAGA+CGG | 0.485776 | 3.4:-29475232 | MS.gene000594:CDS |
| ATGCATCGTCATATTTCTAA+AGG | 0.486909 | 3.4:-29474630 | MS.gene000594:CDS |
| TGTTAGACATATACCTTCAT+GGG | 0.487365 | 3.4:-29476293 | MS.gene000594:CDS |
| ATTGGTCCTGCACTTGCAAA+AGG | 0.487624 | 3.4:-29475014 | MS.gene000594:CDS |
| GCATAGGAAGAAAGAAATAG+AGG | 0.490855 | 3.4:-29473693 | MS.gene000594:CDS |
| TCTTATTTGAAGAATGAAGA+TGG | 0.492836 | 3.4:-29476463 | MS.gene000594:intron |
| TCCAAAACTCAGGAGGCATT+GGG | 0.495058 | 3.4:+29476125 | None:intergenic |
| GAAGATAAACAAACAGCTGA+TGG | 0.496920 | 3.4:-29473641 | MS.gene000594:CDS |
| ATTTCTTTCTTCCTATGCTC+CGG | 0.497518 | 3.4:+29473698 | None:intergenic |
| GAAAAGGGGCGCGCATCACT+TGG | 0.497601 | 3.4:-29476948 | MS.gene000594:CDS |
| GTCATATTTCTAAAGGCTCA+TGG | 0.498248 | 3.4:-29474623 | MS.gene000594:CDS |
| AGCAGGCCAATGGCCATCGC+TGG | 0.499367 | 3.4:+29476913 | None:intergenic |
| TCGTTACATATATTACCATC+AGG | 0.501738 | 3.4:-29476594 | MS.gene000594:intron |
| CGATCAAGACCACGGATGGC+AGG | 0.502684 | 3.4:-29474592 | MS.gene000594:CDS |
| CTCAAAACGCAAGGAGAAGA+TGG | 0.503406 | 3.4:-29473494 | MS.gene000594:CDS |
| AACAAACAGCTGATGGATCA+TGG | 0.503731 | 3.4:-29473634 | MS.gene000594:CDS |
| TGCCAATGCAGTTCAATACC+TGG | 0.508771 | 3.4:-29473663 | MS.gene000594:CDS |
| GGATTAGGGTTACATATTGA+GGG | 0.510905 | 3.4:-29476439 | MS.gene000594:CDS |
| TGGATCATGGTATGGAGCCT+GGG | 0.511464 | 3.4:-29473621 | MS.gene000594:CDS |
| TTCCAGGTATTGAACTGCAT+TGG | 0.516619 | 3.4:+29473661 | None:intergenic |
| TAGTTTGGTGAGAGATGTGG+AGG | 0.520571 | 3.4:-29485130 | None:intergenic |
| CGCCAAAGGAGGTCGCTACA+TGG | 0.522449 | 3.4:+29484945 | None:intergenic |
| CTAATTCAACCTGGATGCAT+AGG | 0.523325 | 3.4:+29476085 | None:intergenic |
| CTTTCAAGAAGCATCTTGCA+AGG | 0.524072 | 3.4:-29475264 | MS.gene000594:CDS |
| ATGTTGCCTTCAGAGATTGT+TGG | 0.524196 | 3.4:-29474414 | MS.gene000594:CDS |
| CCGATCAAATCTAGTACATA+CGG | 0.527175 | 3.4:-29473278 | MS.gene000594:CDS |
| CGATTTCATCAAGAAATCTC+AGG | 0.527580 | 3.4:-29474988 | MS.gene000594:intron |
| GCATTGTCTTGACCTCCATT+AGG | 0.527716 | 3.4:+29476355 | None:intergenic |
| CTGCCATCCGTGGTCTTGAT+CGG | 0.528446 | 3.4:+29474593 | None:intergenic |
| CTTCTCGGTTTAATTCATGC+TGG | 0.532015 | 3.4:-29473247 | MS.gene000594:CDS |
| TCCGTGGTCTTGATCGGAGA+AGG | 0.532383 | 3.4:+29474599 | None:intergenic |
| CTTGTGCACGAGCAAGAAAG+TGG | 0.532579 | 3.4:-29476333 | MS.gene000594:CDS |
| TTCACCACAAATAACTTCGT+GGG | 0.533263 | 3.4:-29485071 | MS.gene000594:CDS |
| CATTGGCCTGCTCAAAATGC+AGG | 0.537523 | 3.4:-29476902 | MS.gene000594:CDS |
| AGAAATTATATCCGGAGCAT+AGG | 0.538075 | 3.4:-29473709 | MS.gene000594:CDS |
| ATGCTTCATTGCTATTTGAA+GGG | 0.538422 | 3.4:+29475514 | None:intergenic |
| TGCCTATGTCTTACTTGTAT+GGG | 0.539477 | 3.4:-29475868 | MS.gene000594:CDS |
| TCTTTGTGAGTATCGTAAAA+GGG | 0.541699 | 3.4:-29471636 | MS.gene000594:CDS |
| AAGGCAACATTGATAAAAGT+AGG | 0.551273 | 3.4:+29474427 | None:intergenic |
| TGGAACCGCTTCTAACTCGT+TGG | 0.551767 | 3.4:-29475565 | MS.gene000594:CDS |
| ATACTCTTAAAATCTCCTGA+AGG | 0.552047 | 3.4:+29474651 | None:intergenic |
| CCGTATGTACTAGATTTGAT+CGG | 0.552703 | 3.4:+29473278 | None:intergenic |
| ATTCACCACAAATAACTTCG+TGG | 0.552736 | 3.4:-29485072 | MS.gene000594:CDS |
| CATGAATATGTTGATTGCAC+CGG | 0.552845 | 3.4:-29473761 | MS.gene000594:CDS |
| CGCAAGGAGAAGATGGTGGG+TGG | 0.552938 | 3.4:-29473487 | MS.gene000594:CDS |
| AAATGGTGGTTTAGCTGCGT+GGG | 0.555263 | 3.4:-29474202 | MS.gene000594:CDS |
| TGGGAATTTGACCCTGATGC+AGG | 0.555281 | 3.4:-29485038 | MS.gene000594:CDS |
| TTTGATCGGTTTCCTTCAAG+AGG | 0.557366 | 3.4:+29473292 | None:intergenic |
| AAATTGAGACGAACCTGTTG+TGG | 0.558777 | 3.4:+29472404 | None:intergenic |
| CAAATCTAGTACATACGGCA+TGG | 0.559132 | 3.4:-29473273 | MS.gene000594:CDS |
| GCAGCATTGCAGACCAGCGA+TGG | 0.559854 | 3.4:-29476926 | MS.gene000594:CDS |
| AGCTACTCACCAAGGGAGGA+AGG | 0.560409 | 3.4:+29476867 | None:intergenic |
| TAAAAGGATGAGGATAGTAA+AGG | 0.560534 | 3.4:+29475624 | None:intergenic |
| AATAGTCGATACATAACCAT+CGG | 0.564130 | 3.4:-29475473 | MS.gene000594:CDS |
| CTTGGTGTATTTGATTGGAG+TGG | 0.564266 | 3.4:-29476154 | MS.gene000594:CDS |
| ATAGTCGATACATAACCATC+GGG | 0.564473 | 3.4:-29475472 | MS.gene000594:CDS |
| GTTTCTGATTGTACTGCAGA+AGG | 0.566219 | 3.4:-29474570 | MS.gene000594:CDS |
| GGATGCATAGGAAGAAATGA+AGG | 0.572300 | 3.4:+29476097 | None:intergenic |
| TACTCTTAAAATCTCCTGAA+GGG | 0.572787 | 3.4:+29474652 | None:intergenic |
| TATTTACTGCAGGAAATCAC+AGG | 0.574304 | 3.4:-29471722 | MS.gene000594:intron |
| TGTGGTGTGAAAATAAAAGA+TGG | 0.574409 | 3.4:-29477007 | MS.gene000594:CDS |
| AAGTTCCAACAAAGAATATG+TGG | 0.575584 | 3.4:-29477025 | MS.gene000594:CDS |
| ACAGCTGATGGATCATGGTA+TGG | 0.577038 | 3.4:-29473629 | MS.gene000594:CDS |
| AGCCAGCAGGAGCTCCAGAA+TGG | 0.577882 | 3.4:-29474179 | MS.gene000594:CDS |
| GCAAGGAGAAGATGGTGGGT+GGG | 0.578058 | 3.4:-29473486 | MS.gene000594:CDS |
| TACTTGCCTGAAGAGACAAT+AGG | 0.580109 | 3.4:+29474349 | None:intergenic |
| TGTATGCGACTTCTTGGAGA+AGG | 0.580654 | 3.4:-29476379 | MS.gene000594:CDS |
| AGATCTTGTATAAAAGGATG+AGG | 0.580662 | 3.4:+29475614 | None:intergenic |
| ATACATAACCATCGGGTGTG+TGG | 0.585448 | 3.4:-29475465 | MS.gene000594:CDS |
| CATCTCCCACCTTCGCACAC+TGG | 0.587902 | 3.4:+29475747 | None:intergenic |
| ACTTCGTGGGGAGACAGACA+TGG | 0.588289 | 3.4:-29485058 | MS.gene000594:CDS |
| ATATGTTGATTGCACCGGAT+CGG | 0.597181 | 3.4:-29473756 | MS.gene000594:CDS |
| CCGAAACCCATAAGTAATCA+GGG | 0.597800 | 3.4:+29475239 | None:intergenic |
| AAATCTAGTACATACGGCAT+GGG | 0.598564 | 3.4:-29473272 | MS.gene000594:CDS |
| AAATTTCTTCTCAAAACGCA+AGG | 0.599400 | 3.4:-29473503 | MS.gene000594:CDS |
| ATATCAGCAATAAACTCCGC+AGG | 0.600868 | 3.4:+29473794 | None:intergenic |
| CTAATGACGACGGTGAAAAG+GGG | 0.601262 | 3.4:-29476962 | MS.gene000594:CDS |
| TCTCTTAACTGTAAGATGAG+TGG | 0.601734 | 3.4:+29475821 | None:intergenic |
| TACTCCTGAAGAGCGAGCAA+TGG | 0.602698 | 3.4:-29485015 | MS.gene000594:CDS |
| CTGGTACCTGAAAGCGCCAA+AGG | 0.603536 | 3.4:+29484931 | None:intergenic |
| TCTCCGATCAAGACCACGGA+TGG | 0.604561 | 3.4:-29474596 | MS.gene000594:CDS |
| TATCAATTCTCAGTCAGAAG+AGG | 0.604605 | 3.4:-29472435 | MS.gene000594:CDS |
| ATCAATTCTCAGTCAGAAGA+GGG | 0.605975 | 3.4:-29472434 | MS.gene000594:CDS |
| TAAGATAGCAGATGGTGGAA+AGG | 0.610449 | 3.4:-29485105 | MS.gene000594:CDS |
| TGGAGGCTTAAGATAGCAGA+TGG | 0.610638 | 3.4:-29485113 | MS.gene000594:CDS |
| ATGCATGCTTGCTTGTTGGG+TGG | 0.610733 | 3.4:-29475305 | MS.gene000594:CDS |
| TTTCAAGAAGCATCTTGCAA+GGG | 0.611204 | 3.4:-29475263 | MS.gene000594:CDS |
| GAAGGAAGGATCCAAAACTC+AGG | 0.611990 | 3.4:+29476115 | None:intergenic |
| TGTGAAAATAAAAGATGGAG+AGG | 0.613284 | 3.4:-29477002 | MS.gene000594:CDS |
| ACTTGCCACTAACTTAATCG+AGG | 0.613390 | 3.4:-29475039 | MS.gene000594:CDS |
| AAACTCAGGAGGCATTGGGT+TGG | 0.614749 | 3.4:+29476129 | None:intergenic |
| AGCACGTCACCAGTGTGCGA+AGG | 0.619199 | 3.4:-29475756 | MS.gene000594:intron |
| AAAATGGTGGTTTAGCTGCG+TGG | 0.619736 | 3.4:-29474203 | MS.gene000594:CDS |
| GAGTAATATATATACCTGCA+TGG | 0.620691 | 3.4:+29475204 | None:intergenic |
| GGGAAAAGATGGAACCAGAA+AGG | 0.621658 | 3.4:-29474392 | MS.gene000594:CDS |
| TACTCACAAAGAGCCCACAT+TGG | 0.623281 | 3.4:+29471647 | None:intergenic |
| CTTCAGGAGTACCTGCATCA+GGG | 0.625044 | 3.4:+29485027 | None:intergenic |
| AACTAATTGCAGCTAAAATG+TGG | 0.625149 | 3.4:-29475913 | MS.gene000594:intron |
| TACATGGCTTAACCTTAAAG+CGG | 0.625776 | 3.4:+29484961 | None:intergenic |
| ATAAATGAAGCAAATTCCCC+AGG | 0.627888 | 3.4:+29473604 | None:intergenic |
| TATTTGTGGTGAATATGTAA+GGG | 0.629240 | 3.4:+29485081 | None:intergenic |
| AATCAGAAACCTGCCATCCG+TGG | 0.632063 | 3.4:+29474583 | None:intergenic |
| GCATAGGAAGAAATGAAGGA+AGG | 0.633205 | 3.4:+29476101 | None:intergenic |
| AAACGCAAGGAGAAGATGGT+GGG | 0.633592 | 3.4:-29473490 | MS.gene000594:CDS |
| TTCCCATACAAGTAAGACAT+AGG | 0.633984 | 3.4:+29475866 | None:intergenic |
| TTTGTAGTTACTCAATCCTG+CGG | 0.637108 | 3.4:-29473810 | MS.gene000594:intron |
| GGAAGACGGAATGACCATGC+AGG | 0.638021 | 3.4:-29475218 | MS.gene000594:intron |
| GTATGCGACTTCTTGGAGAA+GGG | 0.640229 | 3.4:-29476378 | MS.gene000594:CDS |
| AAAACGCAAGGAGAAGATGG+TGG | 0.640306 | 3.4:-29473491 | MS.gene000594:CDS |
| AAAGGCCAACGAGTTAGAAG+CGG | 0.640623 | 3.4:+29475560 | None:intergenic |
| ATTAAGCTACTCACCAAGGG+AGG | 0.641964 | 3.4:+29476863 | None:intergenic |
| GGATCATGGTATGGAGCCTG+GGG | 0.642623 | 3.4:-29473620 | MS.gene000594:CDS |
| ATTGAGTGTGGTACAGAACA+TGG | 0.646883 | 3.4:+29476408 | None:intergenic |
| CTTGGAGAAGGGCCTAATGG+AGG | 0.647406 | 3.4:-29476367 | MS.gene000594:CDS |
| TATTTGAAGAATGAAGATGG+AGG | 0.649641 | 3.4:-29476460 | MS.gene000594:intron |
| GTTGCCTTCAGAGATTGTTG+GGG | 0.650219 | 3.4:-29474412 | MS.gene000594:CDS |
| ACCTTCTCCGATCAAGACCA+CGG | 0.650518 | 3.4:-29474600 | MS.gene000594:CDS |
| AATGTGGTGTTATTGTCGAA+TGG | 0.652194 | 3.4:-29475897 | MS.gene000594:CDS |
| GTACCTGAAAGCGCCAAAGG+AGG | 0.657340 | 3.4:+29484934 | None:intergenic |
| GGAAGGATCCAAAACTCAGG+AGG | 0.661932 | 3.4:+29476118 | None:intergenic |
| CATACATATATAATTGAGTG+TGG | 0.668526 | 3.4:+29476396 | None:intergenic |
| TCACCACAAATAACTTCGTG+GGG | 0.672317 | 3.4:-29485070 | MS.gene000594:CDS |
| CTTCGTGGGGAGACAGACAT+GGG | 0.682491 | 3.4:-29485057 | MS.gene000594:CDS |
| AGGCTTAAGATAGCAGATGG+TGG | 0.687199 | 3.4:-29485110 | MS.gene000594:CDS |
| TGTTGGGTGGAAGATCCAGA+TGG | 0.688945 | 3.4:-29475292 | MS.gene000594:CDS |
| GTTAGACATATACCTTCATG+GGG | 0.696085 | 3.4:-29476292 | MS.gene000594:CDS |
| AAGTGGATTCGTGATCATGG+AGG | 0.730744 | 3.4:-29476316 | MS.gene000594:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 29471622 | 29485138 | 29471622 | ID=MS.gene000594 |
| chr3.4 | mRNA | 29471622 | 29485138 | 29471622 | ID=MS.gene000594.t1;Parent=MS.gene000594 |
| chr3.4 | exon | 29484938 | 29485138 | 29484938 | ID=MS.gene000594.t1.exon1;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29484938 | 29485138 | 29484938 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29476877 | 29477062 | 29476877 | ID=MS.gene000594.t1.exon2;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29476877 | 29477062 | 29476877 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29476595 | 29476684 | 29476595 | ID=MS.gene000594.t1.exon3;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29476595 | 29476684 | 29476595 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29476276 | 29476473 | 29476276 | ID=MS.gene000594.t1.exon4;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29476276 | 29476473 | 29476276 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29476095 | 29476179 | 29476095 | ID=MS.gene000594.t1.exon5;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29476095 | 29476179 | 29476095 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29475757 | 29475923 | 29475757 | ID=MS.gene000594.t1.exon6;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29475757 | 29475923 | 29475757 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29475460 | 29475651 | 29475460 | ID=MS.gene000594.t1.exon7;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29475460 | 29475651 | 29475460 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29475219 | 29475332 | 29475219 | ID=MS.gene000594.t1.exon8;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29475219 | 29475332 | 29475219 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29474989 | 29475108 | 29474989 | ID=MS.gene000594.t1.exon9;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29474989 | 29475108 | 29474989 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29474563 | 29474685 | 29474563 | ID=MS.gene000594.t1.exon10;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29474563 | 29474685 | 29474563 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29474356 | 29474454 | 29474356 | ID=MS.gene000594.t1.exon11;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29474356 | 29474454 | 29474356 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29474173 | 29474229 | 29474173 | ID=MS.gene000594.t1.exon12;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29474173 | 29474229 | 29474173 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29473457 | 29473825 | 29473457 | ID=MS.gene000594.t1.exon13;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29473457 | 29473825 | 29473457 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29473243 | 29473323 | 29473243 | ID=MS.gene000594.t1.exon14;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29473243 | 29473323 | 29473243 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29472418 | 29472501 | 29472418 | ID=MS.gene000594.t1.exon15;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29472418 | 29472501 | 29472418 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| chr3.4 | exon | 29471622 | 29471732 | 29471622 | ID=MS.gene000594.t1.exon16;Parent=MS.gene000594.t1 |
| chr3.4 | CDS | 29471622 | 29471732 | 29471622 | ID=cds.MS.gene000594.t1;Parent=MS.gene000594.t1 |
| Gene Sequence |
| Protein sequence |
