Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07774.t1 | XP_013444353.1 | 94.3 | 760 | 43 | 0 | 1 | 760 | 1 | 760 | 0.00E+00 | 1541.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07774.t1 | Q9LRH7 | 87.5 | 759 | 95 | 0 | 1 | 759 | 1 | 759 | 0.0e+00 | 1448.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07774.t1 | A0A072TXY8 | 94.3 | 760 | 43 | 0 | 1 | 760 | 1 | 760 | 0.0e+00 | 1541.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene053114 | MS.gene07774 | PPI |
MS.gene37340 | MS.gene07774 | PPI |
MS.gene50096 | MS.gene07774 | PPI |
MS.gene87166 | MS.gene07774 | PPI |
MS.gene21690 | MS.gene07774 | PPI |
MS.gene034308 | MS.gene07774 | PPI |
MS.gene011204 | MS.gene07774 | PPI |
MS.gene98129 | MS.gene07774 | PPI |
MS.gene07774 | MS.gene034307 | PPI |
MS.gene22278 | MS.gene07774 | PPI |
MS.gene98126 | MS.gene07774 | PPI |
MS.gene024711 | MS.gene07774 | PPI |
MS.gene07774 | MS.gene21938 | PPI |
MS.gene07774 | MS.gene000594 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07774.t1 | MTR_8g016975 | 94.342 | 760 | 43 | 0 | 1 | 760 | 1 | 760 | 0.0 | 1514 |
MS.gene07774.t1 | MTR_8g016960 | 89.605 | 760 | 72 | 2 | 1 | 759 | 1 | 754 | 0.0 | 1429 |
MS.gene07774.t1 | MTR_8g017020 | 89.474 | 760 | 46 | 2 | 1 | 760 | 1 | 726 | 0.0 | 1409 |
MS.gene07774.t1 | MTR_4g005190 | 80.632 | 759 | 147 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1335 |
MS.gene07774.t1 | MTR_0013s0230 | 78.449 | 761 | 163 | 1 | 1 | 760 | 1 | 761 | 0.0 | 1306 |
MS.gene07774.t1 | MTR_4g005270 | 77.734 | 759 | 169 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1296 |
MS.gene07774.t1 | MTR_4g005190 | 80.120 | 669 | 133 | 0 | 1 | 669 | 1 | 669 | 0.0 | 1172 |
MS.gene07774.t1 | MTR_7g034535 | 76.190 | 693 | 164 | 1 | 68 | 759 | 3 | 695 | 0.0 | 1157 |
MS.gene07774.t1 | MTR_3g436160 | 77.333 | 675 | 149 | 1 | 84 | 758 | 27 | 697 | 0.0 | 1122 |
MS.gene07774.t1 | MTR_6g093180 | 57.937 | 756 | 315 | 2 | 1 | 756 | 1 | 753 | 0.0 | 983 |
MS.gene07774.t1 | MTR_6g034985 | 55.159 | 756 | 336 | 2 | 1 | 756 | 1 | 753 | 0.0 | 931 |
MS.gene07774.t1 | MTR_5g008810 | 56.671 | 757 | 324 | 4 | 1 | 756 | 1 | 754 | 0.0 | 918 |
MS.gene07774.t1 | MTR_6g035010 | 54.172 | 755 | 343 | 2 | 1 | 755 | 1 | 752 | 0.0 | 897 |
MS.gene07774.t1 | MTR_6g093100 | 51.223 | 777 | 357 | 9 | 1 | 757 | 1 | 775 | 0.0 | 822 |
MS.gene07774.t1 | MTR_6g088140 | 50.787 | 762 | 349 | 7 | 1 | 757 | 1 | 741 | 0.0 | 815 |
MS.gene07774.t1 | MTR_7g062020 | 49.935 | 769 | 371 | 5 | 1 | 757 | 1 | 767 | 0.0 | 811 |
MS.gene07774.t1 | MTR_6g088140 | 49.703 | 674 | 314 | 6 | 1 | 670 | 1 | 653 | 0.0 | 704 |
MS.gene07774.t1 | MTR_8g016940 | 71.111 | 270 | 76 | 1 | 491 | 760 | 2 | 269 | 2.34e-135 | 401 |
MS.gene07774.t1 | MTR_3g436170 | 82.353 | 68 | 12 | 0 | 1 | 68 | 1 | 68 | 2.84e-33 | 123 |
MS.gene07774.t1 | MTR_8g017040 | 79.104 | 67 | 14 | 0 | 1 | 67 | 1 | 67 | 6.22e-33 | 123 |
MS.gene07774.t1 | MTR_8g016570 | 64.179 | 67 | 24 | 0 | 695 | 761 | 28 | 94 | 3.03e-23 | 96.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07774.t1 | AT1G78950 | 71.014 | 759 | 219 | 1 | 1 | 758 | 10 | 768 | 0.0 | 1177 |
MS.gene07774.t1 | AT1G78950 | 71.014 | 759 | 219 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1176 |
MS.gene07774.t1 | AT1G78960 | 69.761 | 754 | 227 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1166 |
MS.gene07774.t1 | AT1G78960 | 69.761 | 754 | 227 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1166 |
MS.gene07774.t1 | AT1G78960 | 69.761 | 754 | 227 | 1 | 1 | 753 | 1 | 754 | 0.0 | 1166 |
MS.gene07774.t1 | AT1G78955 | 69.433 | 759 | 231 | 1 | 1 | 758 | 1 | 759 | 0.0 | 1150 |
MS.gene07774.t1 | AT1G78960 | 69.986 | 723 | 216 | 1 | 1 | 722 | 1 | 723 | 0.0 | 1117 |
MS.gene07774.t1 | AT1G78970 | 67.414 | 758 | 243 | 2 | 1 | 757 | 1 | 755 | 0.0 | 1102 |
MS.gene07774.t1 | AT1G78970 | 67.414 | 758 | 243 | 2 | 1 | 757 | 1 | 755 | 0.0 | 1102 |
MS.gene07774.t1 | AT1G78970 | 67.414 | 758 | 243 | 2 | 1 | 757 | 1 | 755 | 0.0 | 1102 |
MS.gene07774.t1 | AT1G66960 | 63.780 | 762 | 275 | 1 | 1 | 761 | 1 | 762 | 0.0 | 1083 |
MS.gene07774.t1 | AT1G66960 | 63.780 | 762 | 275 | 1 | 1 | 761 | 1 | 762 | 0.0 | 1083 |
MS.gene07774.t1 | AT1G66960 | 63.780 | 762 | 275 | 1 | 1 | 761 | 10 | 771 | 0.0 | 1083 |
MS.gene07774.t1 | AT1G66960 | 63.780 | 762 | 275 | 1 | 1 | 761 | 1 | 762 | 0.0 | 1083 |
MS.gene07774.t1 | AT1G78955 | 69.986 | 693 | 208 | 0 | 66 | 758 | 2 | 694 | 0.0 | 1061 |
MS.gene07774.t1 | AT1G78955 | 70.015 | 657 | 197 | 0 | 66 | 722 | 2 | 658 | 0.0 | 1002 |
MS.gene07774.t1 | AT1G78960 | 71.310 | 603 | 173 | 0 | 151 | 753 | 1 | 603 | 0.0 | 968 |
MS.gene07774.t1 | AT5G36150 | 54.354 | 758 | 345 | 1 | 1 | 757 | 1 | 758 | 0.0 | 929 |
MS.gene07774.t1 | AT5G36150 | 54.354 | 758 | 345 | 1 | 1 | 757 | 1 | 758 | 0.0 | 929 |
MS.gene07774.t1 | AT1G78955 | 69.752 | 605 | 183 | 0 | 66 | 670 | 2 | 606 | 0.0 | 920 |
MS.gene07774.t1 | AT2G07050 | 56.069 | 758 | 329 | 4 | 1 | 757 | 1 | 755 | 0.0 | 918 |
MS.gene07774.t1 | AT1G78500 | 54.771 | 765 | 339 | 3 | 1 | 758 | 1 | 765 | 0.0 | 909 |
MS.gene07774.t1 | AT1G78500 | 54.771 | 765 | 339 | 3 | 1 | 758 | 1 | 765 | 0.0 | 909 |
MS.gene07774.t1 | AT5G48010 | 54.308 | 766 | 342 | 4 | 1 | 758 | 1 | 766 | 0.0 | 909 |
MS.gene07774.t1 | AT1G78955 | 71.575 | 584 | 166 | 0 | 175 | 758 | 1 | 584 | 0.0 | 909 |
MS.gene07774.t1 | AT4G15340 | 54.139 | 761 | 343 | 3 | 1 | 755 | 1 | 761 | 0.0 | 898 |
MS.gene07774.t1 | AT4G15370 | 53.421 | 760 | 342 | 4 | 1 | 755 | 1 | 753 | 0.0 | 896 |
MS.gene07774.t1 | AT4G15370 | 53.211 | 763 | 342 | 5 | 1 | 755 | 1 | 756 | 0.0 | 893 |
MS.gene07774.t1 | AT5G48010 | 53.655 | 766 | 339 | 5 | 1 | 758 | 1 | 758 | 0.0 | 889 |
MS.gene07774.t1 | AT5G42600 | 52.833 | 759 | 355 | 3 | 1 | 757 | 1 | 758 | 0.0 | 877 |
MS.gene07774.t1 | AT2G07050 | 56.692 | 665 | 285 | 3 | 94 | 757 | 2 | 664 | 0.0 | 828 |
MS.gene07774.t1 | AT3G45130 | 53.421 | 760 | 344 | 6 | 1 | 756 | 1 | 754 | 0.0 | 806 |
MS.gene07774.t1 | AT3G45130 | 53.421 | 760 | 344 | 6 | 1 | 756 | 1 | 754 | 0.0 | 806 |
MS.gene07774.t1 | AT3G45130 | 53.421 | 760 | 344 | 6 | 1 | 756 | 1 | 754 | 0.0 | 805 |
MS.gene07774.t1 | AT3G45130 | 53.421 | 760 | 344 | 6 | 1 | 756 | 1 | 754 | 0.0 | 805 |
MS.gene07774.t1 | AT3G45130 | 53.421 | 760 | 344 | 6 | 1 | 756 | 1 | 754 | 0.0 | 805 |
MS.gene07774.t1 | AT3G29255 | 47.361 | 758 | 338 | 5 | 2 | 757 | 6 | 704 | 0.0 | 760 |
MS.gene07774.t1 | AT4G15340 | 53.439 | 567 | 258 | 3 | 1 | 561 | 1 | 567 | 0.0 | 660 |
MS.gene07774.t1 | AT1G78480 | 41.935 | 155 | 56 | 4 | 71 | 207 | 48 | 186 | 6.48e-27 | 109 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGGCTCCCAGACTATTTA+TGG | 0.105452 | 8.1:+80947080 | MS.gene07774:CDS |
ACTGAATCATATAACCTTTC+AGG | 0.148460 | 8.1:-80948365 | None:intergenic |
TACCTTCATGGGGAAAATTT+TGG | 0.185771 | 8.1:+80946160 | MS.gene07774:CDS |
CTTTGATACAAGATCTAATA+TGG | 0.197033 | 8.1:+80946768 | MS.gene07774:CDS |
TCTCTAACCAGCTTGTTTAA+TGG | 0.206776 | 8.1:-80946833 | None:intergenic |
AGCCCTGCGGTGACCTTCTT+TGG | 0.229115 | 8.1:+80937806 | MS.gene07774:CDS |
TTTGCTTCACTTATGGTTCT+TGG | 0.234709 | 8.1:+80949188 | MS.gene07774:CDS |
TTGCACTGCAGAAAGTTTAA+AGG | 0.237092 | 8.1:+80948187 | MS.gene07774:CDS |
TACATATGCATGCGAATAAT+TGG | 0.259717 | 8.1:+80946057 | MS.gene07774:CDS |
ATCTCTTTCCGATACTCTTC+AGG | 0.266878 | 8.1:-80938937 | None:intergenic |
CACTTGTTTGTTTATCTTCA+AGG | 0.278614 | 8.1:-80949138 | None:intergenic |
TGGGGAATTTGCTTCACTTA+TGG | 0.280051 | 8.1:+80949181 | MS.gene07774:CDS |
TACTTCTTCCTTTCTATGCT+CGG | 0.292048 | 8.1:-80949086 | None:intergenic |
ATGGTTCATGGTATGGAAAT+TGG | 0.299175 | 8.1:+80949161 | MS.gene07774:CDS |
ATTTCCTCAAGAAATTCTAT+TGG | 0.312858 | 8.1:-80948989 | None:intergenic |
GGCTCACCTTTGCACATAGA+TGG | 0.326832 | 8.1:-80946617 | None:intergenic |
TTTAAGATCAATGGTGTGAT+TGG | 0.334695 | 8.1:-80946537 | None:intergenic |
TGGTTCATGGTATGGAAATT+GGG | 0.335402 | 8.1:+80949162 | MS.gene07774:CDS |
TTGTTACGGCTGAAAATGTT+TGG | 0.350335 | 8.1:-80937673 | None:intergenic |
TCAGCAACCCATAAATAGTC+TGG | 0.372874 | 8.1:-80947088 | None:intergenic |
TCTCTCAACTTTAAGATCAA+TGG | 0.375715 | 8.1:-80946546 | None:intergenic |
AGATACTTGGTATCTTTGAT+TGG | 0.378106 | 8.1:+80946268 | MS.gene07774:intron |
GCCAATCACCCTCCTCTTGT+TGG | 0.385807 | 8.1:-80949726 | None:intergenic |
AATAGTCGATACATAACTAT+TGG | 0.386502 | 8.1:+80946902 | MS.gene07774:CDS |
CAAAGAGAGGATGGTGGGTG+GGG | 0.393065 | 8.1:+80949298 | MS.gene07774:CDS |
CAGGTTAGGGAAAACCCTTC+GGG | 0.396032 | 8.1:+80948083 | MS.gene07774:intron |
GGATAGTTTATACATATTCA+TGG | 0.398348 | 8.1:+80946790 | MS.gene07774:CDS |
ACTAACCTAACTGAGGATAT+TGG | 0.408241 | 8.1:+80947279 | MS.gene07774:CDS |
AAGGCTCCCAGACTATTTAT+GGG | 0.409193 | 8.1:+80947081 | MS.gene07774:CDS |
GTGTGACATACGTACCTTCA+TGG | 0.412285 | 8.1:+80946148 | MS.gene07774:CDS |
TTTGTGCATGCTTTCTTGTT+GGG | 0.416343 | 8.1:+80947018 | MS.gene07774:CDS |
TTCTTGAATGCATCTCCATT+TGG | 0.417078 | 8.1:-80947049 | None:intergenic |
CAGATATATGTACCTCTTGA+AGG | 0.417369 | 8.1:+80949513 | MS.gene07774:intron |
CTTGTGCTAGAGCAAGAAAA+TGG | 0.420705 | 8.1:+80946109 | MS.gene07774:CDS |
TCAAACTAGCATCCCATGTT+TGG | 0.421691 | 8.1:-80947236 | None:intergenic |
AACAAACAAGTGATGGTTCA+TGG | 0.421729 | 8.1:+80949149 | MS.gene07774:CDS |
AAAGGGTGGTTTACCAGCTT+GGG | 0.427919 | 8.1:+80948722 | MS.gene07774:CDS |
ATGCCTATGTCTTACTTGTA+TGG | 0.429627 | 8.1:+80946498 | MS.gene07774:CDS |
TATTTATGGGTTGCTGAAGA+TGG | 0.431829 | 8.1:+80947094 | MS.gene07774:CDS |
TCCTCAGGAGCACCAGCATC+AGG | 0.433203 | 8.1:-80937727 | None:intergenic |
TTGGACCAATATCCTCAGTT+AGG | 0.434139 | 8.1:-80947284 | None:intergenic |
ACATCACATATCAGCACTTC+AGG | 0.434375 | 8.1:+80938505 | MS.gene07774:CDS |
GCAGGTTAGGGAAAACCCTT+CGG | 0.434392 | 8.1:+80948082 | MS.gene07774:intron |
CTGTCTGTACAATATTTGAT+TGG | 0.435205 | 8.1:-80949539 | None:intergenic |
TCAACTTGAGCTCTCTCCTC+AGG | 0.438267 | 8.1:-80937742 | None:intergenic |
GGCTTTGATTCATGCCGGCC+AGG | 0.440066 | 8.1:+80949575 | MS.gene07774:CDS |
TTTCAAACTGCATCAATTGA+AGG | 0.440868 | 8.1:-80951633 | None:intergenic |
AACTATTGGATGTGTGGAAA+AGG | 0.442430 | 8.1:+80946916 | MS.gene07774:CDS |
TGAAGAATGAAGATGGAGGA+TGG | 0.442753 | 8.1:+80945986 | MS.gene07774:intron |
CCGTTACATATATTGTCATC+AGG | 0.444196 | 8.1:+80938963 | MS.gene07774:CDS |
AAAAGGGTGGTTTACCAGCT+TGG | 0.445514 | 8.1:+80948721 | MS.gene07774:CDS |
ACAGACAGCATGGGCTCTAA+TGG | 0.445618 | 8.1:+80949554 | MS.gene07774:CDS |
GGTTCTTGGTTTGCACTTGG+TGG | 0.447161 | 8.1:+80949202 | MS.gene07774:CDS |
TTTCATTTGAAGAATGAAGA+TGG | 0.448568 | 8.1:+80945979 | MS.gene07774:intron |
TCCAACAAGAGGAGGGTGAT+TGG | 0.449039 | 8.1:+80949725 | MS.gene07774:CDS |
TGTTACGGCTGAAAATGTTT+GGG | 0.451054 | 8.1:-80937672 | None:intergenic |
GGATATGTTTCATTGCTACT+TGG | 0.452661 | 8.1:-80946865 | None:intergenic |
ATGTTGCCTCCGGAGATTGT+AGG | 0.458875 | 8.1:+80948329 | MS.gene07774:CDS |
AGAGAAGGTCCATGACCCTT+TGG | 0.460913 | 8.1:-80948135 | None:intergenic |
GAAGAATGAAGATGGAGGAT+GGG | 0.461280 | 8.1:+80945987 | MS.gene07774:intron |
TTGTATGGAAAGAGGTTTGT+CGG | 0.465224 | 8.1:+80946513 | MS.gene07774:CDS |
TTCAGCCGTAACAACTTTGT+GGG | 0.466122 | 8.1:+80937682 | MS.gene07774:CDS |
TTAACTGAGATGAACCTGTT+GGG | 0.470643 | 8.1:-80949749 | None:intergenic |
TTTCAGCCGTAACAACTTTG+TGG | 0.471550 | 8.1:+80937681 | MS.gene07774:CDS |
CGCAGGGCTTAACTTTGAAA+CGG | 0.471558 | 8.1:-80937792 | None:intergenic |
ACCTTCTCTGATCAAGATCA+TGG | 0.472457 | 8.1:+80948149 | MS.gene07774:CDS |
TCATTTCTTCTTAAGCATCC+AGG | 0.473476 | 8.1:+80946333 | MS.gene07774:CDS |
TGTTGCCTCCGGAGATTGTA+GGG | 0.473494 | 8.1:+80948330 | MS.gene07774:CDS |
TTCATCAGCAATTCAAGCTA+TGG | 0.474031 | 8.1:+80949042 | MS.gene07774:CDS |
GGAGGGTGATTGGCCCCAAC+AGG | 0.474530 | 8.1:+80949735 | MS.gene07774:CDS |
ACAAGTGATGGTTCATGGTA+TGG | 0.477045 | 8.1:+80949154 | MS.gene07774:CDS |
ACTTCTTCCTTTCTATGCTC+GGG | 0.479123 | 8.1:-80949085 | None:intergenic |
TGTCTTACTTGTATGGAAAG+AGG | 0.480097 | 8.1:+80946505 | MS.gene07774:CDS |
TATGGTTCTTGGTTTGCACT+TGG | 0.483680 | 8.1:+80949199 | MS.gene07774:CDS |
TTCAGGCTAGTGATGGTCAT+TGG | 0.484302 | 8.1:+80938522 | MS.gene07774:CDS |
AAGATGTGGAGGTTGAAGAT+AGG | 0.485092 | 8.1:+80937634 | None:intergenic |
CATTGGCCTGCTCTAAATGC+TGG | 0.490950 | 8.1:+80938539 | MS.gene07774:CDS |
AATATCCTCAGTTAGGTTAG+TGG | 0.494873 | 8.1:-80947277 | None:intergenic |
GACTATTCTCATCTTCATAG+TGG | 0.496269 | 8.1:-80946886 | None:intergenic |
ACAAAGAGAGGATGGTGGGT+GGG | 0.498212 | 8.1:+80949297 | MS.gene07774:CDS |
AATATATCCCGAGCATAGAA+AGG | 0.500853 | 8.1:+80949078 | MS.gene07774:CDS |
AAGAATGAAGATGGAGGATG+GGG | 0.503155 | 8.1:+80945988 | MS.gene07774:intron |
ACTTTGTGGGGAGGCAGACA+TGG | 0.504750 | 8.1:+80937695 | MS.gene07774:CDS |
GCCTCCCCACAAAGTTGTTA+CGG | 0.506841 | 8.1:-80937687 | None:intergenic |
GCAAGTGTAAAGATCAAAGA+TGG | 0.507210 | 8.1:+80938434 | MS.gene07774:CDS |
TGAATTCATCAAGAATTCTC+AGG | 0.508327 | 8.1:+80947323 | MS.gene07774:CDS |
CATATTAGATCTTGTATCAA+AGG | 0.511080 | 8.1:-80946767 | None:intergenic |
TTTGATACAAGATCTAATAT+GGG | 0.519547 | 8.1:+80946769 | MS.gene07774:CDS |
GTCAAAAGCTCTAGAATGGT+TGG | 0.520457 | 8.1:+80948749 | MS.gene07774:CDS |
AGAAAATGGATTCATGATCA+TGG | 0.523003 | 8.1:+80946123 | MS.gene07774:CDS |
TGGATGCTTAAGAAGAAATG+AGG | 0.525135 | 8.1:-80946331 | None:intergenic |
TGTGACATACGTACCTTCAT+GGG | 0.528965 | 8.1:+80946149 | MS.gene07774:CDS |
TTAGATCTTGTATCAAAGGA+TGG | 0.533010 | 8.1:-80946763 | None:intergenic |
GAGGGAAGCATCCAAAACTC+AGG | 0.533300 | 8.1:-80946312 | None:intergenic |
AATGTTGTGTTATTGTCGAT+TGG | 0.533359 | 8.1:+80946470 | MS.gene07774:CDS |
TCCTGATGCTGGTGCTCCTG+AGG | 0.537403 | 8.1:+80937726 | MS.gene07774:CDS |
GGAGAGAGCTCAAGTTGAAA+CGG | 0.537436 | 8.1:+80937747 | MS.gene07774:CDS |
TAGATCTTGTATCAAAGGAT+GGG | 0.537511 | 8.1:-80946762 | None:intergenic |
ACAGCACGATGAAGAGGTGT+AGG | 0.538470 | 8.1:-80949685 | None:intergenic |
TGATCAAGATCATGGATGGC+AGG | 0.540465 | 8.1:+80948157 | MS.gene07774:CDS |
CAAATATTGTACAGACAGCA+TGG | 0.541559 | 8.1:+80949544 | MS.gene07774:CDS |
ATTGGTCCAACACTTGCAAA+AGG | 0.542743 | 8.1:+80947297 | MS.gene07774:CDS |
TCTCTTTCCGATACTCTTCA+GGG | 0.545948 | 8.1:-80938936 | None:intergenic |
CGATGTTCCCTGAAGAGTAT+CGG | 0.546085 | 8.1:+80938929 | MS.gene07774:CDS |
TGGGTGTTTGATCCTGATGC+TGG | 0.546232 | 8.1:+80937715 | MS.gene07774:CDS |
ATTCAGCTAGAGCCCACATT+GGG | 0.549196 | 8.1:-80951590 | None:intergenic |
TGTTGGGTGGAAGATCCAAA+TGG | 0.553894 | 8.1:+80947034 | MS.gene07774:CDS |
TCATTGGCCATTAAACAAGC+TGG | 0.555486 | 8.1:+80946826 | MS.gene07774:CDS |
GGTTCATGGTATGGAAATTG+GGG | 0.556213 | 8.1:+80949163 | MS.gene07774:CDS |
TAGAGATATATTCCCAATGT+GGG | 0.559047 | 8.1:+80951578 | MS.gene07774:CDS |
GAAGATAAACAAACAAGTGA+TGG | 0.562379 | 8.1:+80949142 | MS.gene07774:CDS |
GTCATATCACCAAAGGGTCA+TGG | 0.562598 | 8.1:+80948126 | MS.gene07774:CDS |
ACGCCAAAGAAGGTCACCGC+AGG | 0.562931 | 8.1:-80937809 | None:intergenic |
CTACCTGAAAACGCCAAAGA+AGG | 0.563480 | 8.1:-80937819 | None:intergenic |
TTTCCATACAAGTAAGACAT+AGG | 0.563575 | 8.1:-80946501 | None:intergenic |
ATAATTGGTGAAGGTCCAAA+TGG | 0.564951 | 8.1:+80946072 | MS.gene07774:CDS |
AGCCGTCAAAAGCTCTAGAA+TGG | 0.565890 | 8.1:+80948745 | MS.gene07774:CDS |
GGATGGGGACTGCACGTAGA+GGG | 0.566773 | 8.1:+80946003 | MS.gene07774:CDS |
GAAGATAGGTGATGGTGGAA+AGG | 0.570053 | 8.1:+80937648 | MS.gene07774:CDS |
AGAGGGCCAGCATTTAGAGC+AGG | 0.570566 | 8.1:-80938545 | None:intergenic |
CATCAATCTCCAACAAGAGG+AGG | 0.574714 | 8.1:+80949717 | MS.gene07774:CDS |
TGCTCTCAAAATCTCCCGAA+GGG | 0.575521 | 8.1:-80948097 | None:intergenic |
ATTGAAACTATACAGATACT+TGG | 0.578759 | 8.1:+80946255 | MS.gene07774:intron |
CAGCAACCCATAAATAGTCT+GGG | 0.579879 | 8.1:-80947087 | None:intergenic |
AGGGAAGCATCCAAAACTCA+GGG | 0.583554 | 8.1:-80946311 | None:intergenic |
AAGTGCTGATATGTGATGTA+CGG | 0.587102 | 8.1:-80938501 | None:intergenic |
TTTGATTGGCTTCCTTCAAG+AGG | 0.588636 | 8.1:-80949525 | None:intergenic |
CTCTAGCTGAATATCGTAGA+CGG | 0.590678 | 8.1:+80951601 | MS.gene07774:CDS |
AGATCTTGTATCAAAGGATG+GGG | 0.592595 | 8.1:-80946761 | None:intergenic |
CATTCAAGAAGCATCTTGCA+AGG | 0.592657 | 8.1:+80947062 | MS.gene07774:CDS |
TACAAAGAGAGGATGGTGGG+TGG | 0.592851 | 8.1:+80949296 | MS.gene07774:CDS |
GTGCATGCTTTCTTGTTGGG+TGG | 0.593611 | 8.1:+80947021 | MS.gene07774:CDS |
TCCATGATCTTGATCAGAGA+AGG | 0.596019 | 8.1:-80948150 | None:intergenic |
ATACATAACTATTGGATGTG+TGG | 0.596458 | 8.1:+80946910 | MS.gene07774:CDS |
CATTTGAAGAATGAAGATGG+AGG | 0.598405 | 8.1:+80945982 | MS.gene07774:intron |
GCCGTAACAACTTTGTGGGG+AGG | 0.599381 | 8.1:+80937686 | MS.gene07774:CDS |
CGATACAAAGAGAGGATGGT+GGG | 0.599664 | 8.1:+80949293 | MS.gene07774:CDS |
AGGGAGGAAAATAAAAGAGA+GGG | 0.603160 | 8.1:-80938562 | None:intergenic |
CTAATGGCTTTGATTCATGC+CGG | 0.605359 | 8.1:+80949570 | MS.gene07774:CDS |
AATCATCAATCTCCAACAAG+AGG | 0.605394 | 8.1:+80949714 | MS.gene07774:CDS |
ATCAATCTCCAACAAGAGGA+GGG | 0.605437 | 8.1:+80949718 | MS.gene07774:CDS |
CCTGATGACAATATATGTAA+CGG | 0.606189 | 8.1:-80938963 | None:intergenic |
GGATGCTTAAGAAGAAATGA+GGG | 0.607000 | 8.1:-80946330 | None:intergenic |
CTTGGTGGTCTAGCAGTCGT+CGG | 0.607378 | 8.1:+80949217 | MS.gene07774:CDS |
ATGTACCGTCATATCACCAA+AGG | 0.607511 | 8.1:+80948119 | MS.gene07774:CDS |
TCTCTGATCAAGATCATGGA+TGG | 0.608749 | 8.1:+80948153 | MS.gene07774:CDS |
AATGGCCAATGAGTCAAAAG+TGG | 0.609475 | 8.1:-80946815 | None:intergenic |
CGCCAAAGAAGGTCACCGCA+GGG | 0.611719 | 8.1:-80937808 | None:intergenic |
CAATCCAATAGAATTTCTTG+AGG | 0.612660 | 8.1:+80948985 | MS.gene07774:CDS |
TATTCAGCTAGAGCCCACAT+TGG | 0.613001 | 8.1:-80951591 | None:intergenic |
TAACTGAGATGAACCTGTTG+GGG | 0.614361 | 8.1:-80949748 | None:intergenic |
ATGCTCTCAAAATCTCCCGA+AGG | 0.615000 | 8.1:-80948098 | None:intergenic |
TCAGCACTTCAGGCTAGTGA+TGG | 0.615017 | 8.1:+80938515 | MS.gene07774:CDS |
AAAAGGCGAAGGTACCTGGC+CGG | 0.615289 | 8.1:-80949589 | None:intergenic |
ATGACCCTTTGGTGATATGA+CGG | 0.616567 | 8.1:-80948124 | None:intergenic |
TAAGATAATTTATACATGCA+GGG | 0.618282 | 8.1:-80947122 | None:intergenic |
TGCATGCGAATAATTGGTGA+AGG | 0.619608 | 8.1:+80946063 | MS.gene07774:CDS |
CTTACGATACAAAGAGAGGA+TGG | 0.619745 | 8.1:+80949289 | MS.gene07774:CDS |
CAGCACGATGAAGAGGTGTA+GGG | 0.622174 | 8.1:-80949684 | None:intergenic |
AAGGGAGGAAAATAAAAGAG+AGG | 0.624822 | 8.1:-80938563 | None:intergenic |
CTTTGTGGGGAGGCAGACAT+GGG | 0.628178 | 8.1:+80937696 | MS.gene07774:CDS |
AGGTTGAAGATAGGTGATGG+TGG | 0.629679 | 8.1:+80937643 | MS.gene07774:CDS |
TGTACCGTCATATCACCAAA+GGG | 0.629686 | 8.1:+80948120 | MS.gene07774:CDS |
AGTACGCCATCTATGTGCAA+AGG | 0.630962 | 8.1:+80946611 | MS.gene07774:CDS |
ATATAATATATAAGATGTGG+AGG | 0.635885 | 8.1:+80937623 | None:intergenic |
ATTGGTGAAGGTCCAAATGG+AGG | 0.639536 | 8.1:+80946075 | MS.gene07774:CDS |
TCAGCCGTAACAACTTTGTG+GGG | 0.643418 | 8.1:+80937683 | MS.gene07774:CDS |
AAATATTGTACAGACAGCAT+GGG | 0.647342 | 8.1:+80949545 | MS.gene07774:CDS |
TGGAGGTTGAAGATAGGTGA+TGG | 0.648504 | 8.1:+80937640 | MS.gene07774:CDS |
AGGATGGGGACTGCACGTAG+AGG | 0.652096 | 8.1:+80946002 | MS.gene07774:CDS |
TTAGAGATATATTCCCAATG+TGG | 0.652316 | 8.1:+80951577 | MS.gene07774:CDS |
TCTGCTTACGATACAAAGAG+AGG | 0.653255 | 8.1:+80949285 | MS.gene07774:CDS |
TATTGCATACTCACCAAGGG+AGG | 0.653873 | 8.1:-80938578 | None:intergenic |
GGGAAGCATCCAAAACTCAG+GGG | 0.661514 | 8.1:-80946310 | None:intergenic |
GTGACATACGTACCTTCATG+GGG | 0.670176 | 8.1:+80946150 | MS.gene07774:CDS |
GCTTGCCACTAACCTAACTG+AGG | 0.671729 | 8.1:+80947272 | MS.gene07774:CDS |
ACGATACAAAGAGAGGATGG+TGG | 0.679170 | 8.1:+80949292 | MS.gene07774:CDS |
GGAAGCATCCAAAACTCAGG+GGG | 0.679671 | 8.1:-80946309 | None:intergenic |
GTTGCCTCCGGAGATTGTAG+GGG | 0.689167 | 8.1:+80948331 | MS.gene07774:CDS |
CGTTTCAAAGTTAAGCCCTG+CGG | 0.694413 | 8.1:+80937793 | MS.gene07774:CDS |
ATGTACGGCTCTTCTTAACG+TGG | 0.702577 | 8.1:-80938486 | None:intergenic |
AAATGGATTCATGATCATGG+TGG | 0.780001 | 8.1:+80946126 | MS.gene07774:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 80937637 | 80951653 | 80937637 | ID=MS.gene07774 |
chr8.1 | mRNA | 80937637 | 80951653 | 80937637 | ID=MS.gene07774.t1;Parent=MS.gene07774 |
chr8.1 | exon | 80937637 | 80937837 | 80937637 | ID=MS.gene07774.t1.exon1;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80937637 | 80937837 | 80937637 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80938401 | 80938586 | 80938401 | ID=MS.gene07774.t1.exon2;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80938401 | 80938586 | 80938401 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80938895 | 80938984 | 80938895 | ID=MS.gene07774.t1.exon3;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80938895 | 80938984 | 80938895 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80945991 | 80946188 | 80945991 | ID=MS.gene07774.t1.exon4;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80945991 | 80946188 | 80945991 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80946270 | 80946354 | 80946270 | ID=MS.gene07774.t1.exon5;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80946270 | 80946354 | 80946270 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80946466 | 80946632 | 80946466 | ID=MS.gene07774.t1.exon6;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80946466 | 80946632 | 80946466 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80946746 | 80946937 | 80946746 | ID=MS.gene07774.t1.exon7;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80946746 | 80946937 | 80946746 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80947016 | 80947129 | 80947016 | ID=MS.gene07774.t1.exon8;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80947016 | 80947129 | 80947016 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80947225 | 80947344 | 80947225 | ID=MS.gene07774.t1.exon9;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80947225 | 80947344 | 80947225 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80948086 | 80948208 | 80948086 | ID=MS.gene07774.t1.exon10;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80948086 | 80948208 | 80948086 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80948311 | 80948409 | 80948311 | ID=MS.gene07774.t1.exon11;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80948311 | 80948409 | 80948311 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80948717 | 80948773 | 80948717 | ID=MS.gene07774.t1.exon12;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80948717 | 80948773 | 80948717 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80948980 | 80949348 | 80948980 | ID=MS.gene07774.t1.exon13;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80948980 | 80949348 | 80948980 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80949516 | 80949596 | 80949516 | ID=MS.gene07774.t1.exon14;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80949516 | 80949596 | 80949516 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80949673 | 80949756 | 80949673 | ID=MS.gene07774.t1.exon15;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80949673 | 80949756 | 80949673 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
chr8.1 | exon | 80951528 | 80951653 | 80951528 | ID=MS.gene07774.t1.exon16;Parent=MS.gene07774.t1 |
chr8.1 | CDS | 80951528 | 80951653 | 80951528 | ID=cds.MS.gene07774.t1;Parent=MS.gene07774.t1 |
Gene Sequence |
Protein sequence |