AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22612

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22612.t1 MTR_2g078470 71.505 372 88 1 20 373 3 374 1.26e-174 491
MS.gene22612.t1 MTR_2g078470 69.775 311 76 1 96 388 10 320 5.78e-138 399
MS.gene22612.t1 MTR_6g043150 69.841 315 95 0 19 333 2 316 5.75e-156 442
MS.gene22612.t1 MTR_6g043150 62.379 311 99 1 96 388 10 320 3.93e-126 367
MS.gene22612.t1 MTR_6g043150 70.040 247 74 0 28 274 80 326 3.60e-119 349
MS.gene22612.t1 MTR_6g043150 59.406 202 59 1 27 205 125 326 2.71e-70 224
MS.gene22612.t1 MTR_5g010840 71.481 270 62 1 25 279 110 379 6.75e-127 371
MS.gene22612.t1 MTR_5g010840 66.548 281 79 1 93 358 109 389 3.45e-119 351
MS.gene22612.t1 MTR_5g010840 62.642 265 66 2 162 393 109 373 2.97e-105 316
MS.gene22612.t1 MTR_8g080860 40.357 280 163 1 15 294 4 279 1.53e-65 210
MS.gene22612.t1 MTR_8g080860 36.965 257 162 0 96 352 16 272 6.91e-52 175
MS.gene22612.t1 MTR_8g080860 35.857 251 133 2 165 392 16 261 7.17e-47 162
MS.gene22612.t1 MTR_8g080860 40.357 280 163 1 15 294 8 283 1.54e-65 210
MS.gene22612.t1 MTR_8g080860 37.500 248 155 0 96 343 20 267 7.72e-52 175
MS.gene22612.t1 MTR_8g080860 35.857 251 133 2 165 392 20 265 7.40e-47 162
MS.gene22612.t1 MTR_8g080350 44.138 290 135 5 54 341 86 350 1.36e-59 198
MS.gene22612.t1 MTR_8g080350 44.487 263 132 5 123 375 86 344 1.30e-58 196
MS.gene22612.t1 MTR_8g080350 46.575 219 107 2 26 243 125 334 1.12e-51 177
MS.gene22612.t1 MTR_8g080350 38.340 253 98 5 192 388 86 336 8.60e-38 140
MS.gene22612.t1 MTR_8g095240 34.473 351 150 3 31 301 8 358 1.35e-49 173
MS.gene22612.t1 MTR_8g095240 36.527 334 171 6 93 391 1 328 2.71e-49 172
MS.gene22612.t1 MTR_8g095240 34.783 184 96 3 29 211 177 337 1.30e-19 90.5
MS.gene22612.t1 MTR_4g107460 36.972 284 177 2 21 302 3 286 2.77e-49 170
MS.gene22612.t1 MTR_4g107460 38.889 252 125 3 165 392 9 255 4.68e-47 164
MS.gene22612.t1 MTR_4g107460 34.448 299 194 2 96 392 9 307 1.50e-45 160
MS.gene22612.t1 MTR_8g088930 48.485 198 101 1 17 214 3 199 6.79e-49 176
MS.gene22612.t1 MTR_8g088930 41.579 190 106 1 165 354 13 197 5.88e-37 142
MS.gene22612.t1 MTR_8g088930 43.085 188 106 1 96 283 13 199 2.41e-36 140
MS.gene22612.t1 MTR_8g088930 40.805 174 75 2 234 384 13 181 1.78e-27 114
MS.gene22612.t1 MTR_8g088930 48.485 198 101 1 17 214 3 199 7.07e-49 176
MS.gene22612.t1 MTR_8g088930 41.579 190 106 1 165 354 13 197 5.79e-37 142
MS.gene22612.t1 MTR_8g088930 43.085 188 106 1 96 283 13 199 2.59e-36 140
MS.gene22612.t1 MTR_8g088930 40.805 174 75 2 234 384 13 181 1.76e-27 114
MS.gene22612.t1 MTR_8g088930 48.485 198 101 1 17 214 3 199 2.16e-48 175
MS.gene22612.t1 MTR_8g088930 41.579 190 106 1 165 354 13 197 1.33e-36 142
MS.gene22612.t1 MTR_8g088930 43.085 188 106 1 96 283 13 199 7.98e-36 139
MS.gene22612.t1 MTR_8g088930 40.805 174 75 2 234 384 13 181 2.94e-27 114
MS.gene22612.t1 MTR_8g088930 48.485 198 101 1 17 214 3 199 2.25e-48 175
MS.gene22612.t1 MTR_8g088930 41.579 190 106 1 165 354 13 197 1.37e-36 141
MS.gene22612.t1 MTR_8g088930 43.085 188 106 1 96 283 13 199 7.96e-36 139
MS.gene22612.t1 MTR_8g088930 40.805 174 75 2 234 384 13 181 2.85e-27 114
MS.gene22612.t1 MTR_8g092090 37.247 247 124 3 96 334 9 232 7.58e-44 153
MS.gene22612.t1 MTR_8g092090 36.508 252 129 2 21 264 3 231 1.90e-43 152
MS.gene22612.t1 MTR_8g092090 35.178 253 121 3 158 387 2 234 3.43e-41 145
MS.gene22612.t1 MTR_1g062740 37.563 197 122 1 20 216 44 239 8.51e-33 130
MS.gene22612.t1 MTR_1g062740 35.450 189 117 1 162 350 48 231 2.98e-27 114
MS.gene22612.t1 MTR_1g062740 32.035 231 145 3 82 301 28 257 3.52e-26 111
MS.gene22612.t1 MTR_1g062740 31.818 154 100 1 231 384 48 196 3.70e-17 84.0
MS.gene22612.t1 MTR_8g080340 37.949 195 71 3 100 294 23 167 6.97e-32 119
MS.gene22612.t1 MTR_8g080340 44.966 149 58 2 15 140 8 155 4.66e-30 114
MS.gene22612.t1 MTR_8g080340 37.419 155 69 2 238 392 23 149 1.99e-25 101
MS.gene22612.t1 MTR_3g073100 37.441 211 127 3 138 347 34 240 1.18e-31 127
MS.gene22612.t1 MTR_3g073100 40.449 178 105 1 20 196 50 227 1.40e-28 118
MS.gene22612.t1 MTR_3g073100 36.788 193 117 2 71 262 36 224 5.05e-26 110
MS.gene22612.t1 MTR_3g073100 35.556 180 106 3 207 385 34 204 1.60e-21 97.1
MS.gene22612.t1 MTR_1g050740 37.379 206 122 1 23 228 57 255 6.60e-29 119
MS.gene22612.t1 MTR_1g050740 35.678 199 127 1 90 288 55 252 3.91e-28 117
MS.gene22612.t1 MTR_1g050740 35.385 195 115 1 165 348 61 255 1.34e-26 112
MS.gene22612.t1 MTR_1g050740 30.303 198 132 2 193 389 43 235 3.55e-18 87.0
MS.gene22612.t1 MTR_3g097260 37.931 203 118 2 23 217 51 253 8.65e-29 119
MS.gene22612.t1 MTR_3g097260 36.686 169 107 0 165 333 55 223 8.05e-23 100
MS.gene22612.t1 MTR_3g097260 35.088 171 111 0 96 266 55 225 2.23e-20 93.6
MS.gene22612.t1 MTR_3g097260 28.736 174 119 1 211 384 55 223 1.73e-16 81.6
MS.gene22612.t1 MTR_8g039100 31.538 260 144 4 23 281 49 275 5.18e-28 116
MS.gene22612.t1 MTR_8g039100 34.197 193 122 1 165 357 53 240 8.73e-26 110
MS.gene22612.t1 MTR_8g039100 30.460 174 93 2 234 384 53 221 4.01e-16 80.9
MS.gene22612.t1 MTR_8g092410 31.081 296 173 8 7 278 7 295 6.64e-27 110
MS.gene22612.t1 MTR_8g092410 29.231 260 166 7 100 342 32 290 5.16e-21 94.0
MS.gene22612.t1 MTR_8g092410 27.778 270 151 6 161 391 24 288 2.50e-19 89.0
MS.gene22612.t1 MTR_8g095170 35.407 209 129 3 14 217 17 224 2.84e-26 110
MS.gene22612.t1 MTR_8g095170 34.673 199 122 4 142 339 13 204 2.72e-25 108
MS.gene22612.t1 MTR_8g095170 32.857 210 133 4 82 286 18 224 4.54e-23 101
MS.gene22612.t1 MTR_8g095170 34.286 175 103 4 211 384 13 176 9.31e-20 91.7
MS.gene22612.t1 MTR_8g095170 35.407 209 129 3 14 217 17 224 5.33e-26 110
MS.gene22612.t1 MTR_8g095170 35.393 178 113 2 163 339 28 204 5.44e-25 107
MS.gene22612.t1 MTR_8g095170 32.857 210 133 4 82 286 18 224 9.80e-23 100
MS.gene22612.t1 MTR_8g095170 34.286 175 103 4 211 384 13 176 1.75e-19 90.9
MS.gene22612.t1 MTR_5g459450 35.385 195 103 1 12 206 54 225 1.05e-25 109
MS.gene22612.t1 MTR_5g459450 32.328 232 138 4 106 327 18 240 2.29e-25 108
MS.gene22612.t1 MTR_5g459450 36.424 151 91 1 234 384 69 214 6.18e-22 98.6
MS.gene22612.t1 MTR_5g459450 32.222 180 99 1 96 275 69 225 9.65e-21 94.7
MS.gene22612.t1 MTR_7g089950 36.500 200 104 2 22 221 66 242 8.46e-24 103
MS.gene22612.t1 MTR_7g089950 34.021 194 105 2 96 289 71 241 2.95e-22 99.4
MS.gene22612.t1 MTR_7g089950 35.503 169 109 0 165 333 71 239 3.71e-22 99.0
MS.gene22612.t1 MTR_7g089950 33.548 155 98 1 234 388 71 220 5.72e-17 83.2
MS.gene22612.t1 MTR_7g089950 30.058 173 121 0 140 312 69 241 1.27e-15 79.3
MS.gene22612.t1 MTR_7g089950 29.897 194 113 1 50 243 71 241 1.71e-15 79.0
MS.gene22612.t1 MTR_3g014650 32.512 203 102 2 23 225 85 252 6.73e-23 101
MS.gene22612.t1 MTR_3g014650 31.771 192 114 2 163 354 87 261 6.32e-20 92.4
MS.gene22612.t1 MTR_3g014650 30.769 195 122 2 90 284 83 264 1.31e-18 88.2
MS.gene22612.t1 MTR_3g014650 29.213 178 109 3 228 393 83 255 1.14e-11 67.0
MS.gene22612.t1 MTR_7g451440 34.409 186 99 1 28 213 193 355 8.14e-19 88.2
MS.gene22612.t1 MTR_7g451440 31.937 191 107 1 97 287 193 360 3.73e-17 83.2
MS.gene22612.t1 MTR_7g451440 30.952 168 116 0 166 333 193 360 2.54e-15 77.8
MS.gene22612.t1 MTR_7g451440 26.961 204 140 1 114 317 173 367 6.45e-14 73.6
MS.gene22612.t1 MTR_5g058920 33.854 192 104 1 28 219 198 366 8.23e-19 88.2
MS.gene22612.t1 MTR_5g058920 31.606 193 109 1 96 288 197 366 2.02e-16 80.9
MS.gene22612.t1 MTR_5g058920 30.846 201 111 2 165 365 197 369 1.21e-15 78.6
MS.gene22612.t1 MTR_5g058920 29.444 180 126 1 140 318 195 374 2.34e-12 68.6
MS.gene22612.t1 MTR_5g058920 33.113 151 96 1 234 384 197 342 3.30e-11 65.1
MS.gene22612.t1 MTR_4g099180 33.333 186 101 1 28 213 173 335 1.62e-18 87.0
MS.gene22612.t1 MTR_4g099180 28.033 239 142 3 136 374 145 353 2.64e-16 80.5
MS.gene22612.t1 MTR_4g099180 30.159 189 109 1 96 284 172 337 2.74e-16 80.5
MS.gene22612.t1 MTR_4g099180 27.041 196 134 1 122 317 161 347 1.32e-13 72.4
MS.gene22612.t1 MTR_4g099180 30.556 180 118 2 205 384 145 317 6.99e-12 67.0
MS.gene22612.t1 MTR_8g080310 28.824 170 98 1 97 266 11 157 6.02e-18 80.9
MS.gene22612.t1 MTR_8g080310 30.128 156 109 0 65 220 2 157 4.48e-17 78.2
MS.gene22612.t1 MTR_8g080310 28.571 154 110 0 181 334 3 156 9.57e-16 74.7
MS.gene22612.t1 MTR_8g080310 25.824 182 107 2 203 384 2 155 2.50e-15 73.6
MS.gene22612.t1 MTR_8g080310 28.205 156 112 0 134 289 2 157 3.23e-15 73.2
MS.gene22612.t1 MTR_8g080310 29.032 155 110 0 43 197 3 157 5.01e-15 72.4
MS.gene22612.t1 MTR_8g080310 26.316 152 112 0 161 312 6 157 5.98e-15 72.4
MS.gene22612.t1 MTR_3g072650 29.545 220 129 3 16 232 172 368 1.61e-17 84.0
MS.gene22612.t1 MTR_3g072650 30.435 207 120 2 96 301 185 368 2.00e-15 77.8
MS.gene22612.t1 MTR_3g072650 28.856 201 115 2 165 365 185 357 2.82e-14 74.3
MS.gene22612.t1 MTR_3g072650 28.652 178 127 0 129 306 172 349 9.47e-14 72.8
MS.gene22612.t1 MTR_3g072650 30.583 206 119 2 28 232 186 368 2.05e-17 84.0
MS.gene22612.t1 MTR_3g072650 30.435 207 120 2 96 301 185 368 3.30e-15 77.4
MS.gene22612.t1 MTR_3g072650 28.856 201 115 2 165 365 185 357 4.74e-14 73.6
MS.gene22612.t1 MTR_3g072650 28.652 178 127 0 129 306 172 349 1.76e-13 72.0
MS.gene22612.t1 MTR_8g007500 30.890 191 109 1 28 218 198 365 4.21e-16 80.1
MS.gene22612.t1 MTR_8g007500 30.045 223 126 3 148 368 178 372 4.29e-16 80.1
MS.gene22612.t1 MTR_8g007500 30.729 192 110 1 96 287 197 365 1.04e-15 79.0
MS.gene22612.t1 MTR_8g007500 28.090 178 128 0 140 317 195 372 6.45e-15 76.6
MS.gene22612.t1 MTR_3g023315 69.767 43 13 0 31 73 12 54 2.29e-13 65.5
MS.gene22612.t1 MTR_3g023315 61.702 47 18 0 96 142 8 54 3.65e-11 59.3
MS.gene22612.t1 MTR_3g023310 25.455 165 94 2 225 360 10 174 3.51e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22612.t1 AT1G60890 38.265 196 120 1 19 214 3 197 1.64e-33 132
MS.gene22612.t1 AT1G60890 38.235 170 105 0 165 334 11 180 2.02e-30 124
MS.gene22612.t1 AT1G60890 34.574 188 122 1 96 283 11 197 2.05e-27 114
MS.gene22612.t1 AT1G60890 28.409 176 121 1 209 384 9 179 1.99e-14 75.5
MS.gene22612.t1 AT1G10900 38.071 197 121 1 18 214 2 197 2.37e-33 132
MS.gene22612.t1 AT1G10900 35.484 186 115 1 165 350 11 191 2.28e-26 111
MS.gene22612.t1 AT1G10900 32.979 188 125 1 96 283 11 197 6.27e-24 104
MS.gene22612.t1 AT1G10900 29.310 174 72 2 234 384 11 156 5.23e-16 80.5
MS.gene22612.t1 AT1G10900 38.071 197 121 1 18 214 2 197 2.37e-33 132
MS.gene22612.t1 AT1G10900 35.484 186 115 1 165 350 11 191 2.28e-26 111
MS.gene22612.t1 AT1G10900 32.979 188 125 1 96 283 11 197 6.27e-24 104
MS.gene22612.t1 AT1G10900 29.310 174 72 2 234 384 11 156 5.23e-16 80.5
MS.gene22612.t1 AT1G10900 38.071 197 121 1 18 214 2 197 2.37e-33 132
MS.gene22612.t1 AT1G10900 35.484 186 115 1 165 350 11 191 2.28e-26 111
MS.gene22612.t1 AT1G10900 32.979 188 125 1 96 283 11 197 6.27e-24 104
MS.gene22612.t1 AT1G10900 29.310 174 72 2 234 384 11 156 5.23e-16 80.5
MS.gene22612.t1 AT1G60890 38.542 192 117 1 23 214 19 209 2.72e-33 132
MS.gene22612.t1 AT1G60890 37.097 186 112 1 165 350 23 203 1.39e-30 124
MS.gene22612.t1 AT1G60890 34.574 188 122 1 96 283 23 209 1.39e-27 115
MS.gene22612.t1 AT1G60890 28.409 176 121 1 209 384 21 191 1.35e-14 76.3
MS.gene22612.t1 AT1G21980 36.869 198 120 1 165 362 76 268 2.14e-31 126
MS.gene22612.t1 AT1G21980 41.143 175 103 0 23 197 72 246 4.48e-31 125
MS.gene22612.t1 AT1G21980 36.257 171 109 0 96 266 76 246 5.25e-26 110
MS.gene22612.t1 AT1G21980 27.717 184 128 1 211 394 76 254 6.08e-15 77.0
MS.gene22612.t1 AT3G09920 30.259 347 224 8 17 353 41 379 2.17e-31 126
MS.gene22612.t1 AT3G09920 31.696 224 147 2 150 372 38 256 1.43e-24 106
MS.gene22612.t1 AT3G09920 31.325 166 109 1 219 384 38 198 5.54e-17 83.6
MS.gene22612.t1 AT3G09920 30.259 347 224 8 17 353 41 379 2.17e-31 126
MS.gene22612.t1 AT3G09920 31.696 224 147 2 150 372 38 256 1.43e-24 106
MS.gene22612.t1 AT3G09920 31.325 166 109 1 219 384 38 198 5.54e-17 83.6
MS.gene22612.t1 AT3G09920 30.259 347 224 8 17 353 41 379 2.17e-31 126
MS.gene22612.t1 AT3G09920 31.696 224 147 2 150 372 38 256 1.43e-24 106
MS.gene22612.t1 AT3G09920 31.325 166 109 1 219 384 38 198 5.54e-17 83.6
MS.gene22612.t1 AT3G09920 30.259 347 224 8 17 353 41 379 2.17e-31 126
MS.gene22612.t1 AT3G09920 31.696 224 147 2 150 372 38 256 1.43e-24 106
MS.gene22612.t1 AT3G09920 31.325 166 109 1 219 384 38 198 5.54e-17 83.6
MS.gene22612.t1 AT3G07960 34.685 222 119 2 23 244 23 218 4.53e-30 122
MS.gene22612.t1 AT3G07960 30.364 247 152 4 149 394 10 237 3.38e-27 114
MS.gene22612.t1 AT3G07960 33.846 195 128 1 90 284 21 214 1.53e-26 112
MS.gene22612.t1 AT3G07960 32.323 198 133 1 73 270 27 223 5.01e-21 95.5
MS.gene22612.t1 AT3G07960 32.418 182 123 0 142 323 27 208 5.15e-21 95.5
MS.gene22612.t1 AT3G07960 34.685 222 119 2 23 244 23 218 4.79e-30 122
MS.gene22612.t1 AT3G07960 30.364 247 152 4 149 394 10 237 2.92e-27 114
MS.gene22612.t1 AT3G07960 33.846 195 128 1 90 284 21 214 1.42e-26 112
MS.gene22612.t1 AT3G07960 32.323 198 133 1 73 270 27 223 4.47e-21 95.5
MS.gene22612.t1 AT3G07960 32.418 182 123 0 142 323 27 208 4.68e-21 95.5
MS.gene22612.t1 AT3G07960 34.685 222 119 2 23 244 23 218 4.79e-30 122
MS.gene22612.t1 AT3G07960 30.364 247 152 4 149 394 10 237 2.92e-27 114
MS.gene22612.t1 AT3G07960 33.846 195 128 1 90 284 21 214 1.42e-26 112
MS.gene22612.t1 AT3G07960 32.323 198 133 1 73 270 27 223 4.47e-21 95.5
MS.gene22612.t1 AT3G07960 32.418 182 123 0 142 323 27 208 4.68e-21 95.5
MS.gene22612.t1 AT3G07960 34.685 222 119 2 23 244 23 218 1.40e-29 121
MS.gene22612.t1 AT3G07960 30.364 247 152 4 149 394 10 237 9.39e-27 112
MS.gene22612.t1 AT3G07960 33.846 195 128 1 90 284 21 214 5.54e-26 110
MS.gene22612.t1 AT3G07960 32.418 182 123 0 142 323 27 208 1.93e-20 94.0
MS.gene22612.t1 AT3G07960 32.323 198 133 1 73 270 27 223 2.00e-20 94.0
MS.gene22612.t1 AT1G77740 38.286 175 108 0 23 197 73 247 8.82e-28 115
MS.gene22612.t1 AT1G77740 35.632 174 112 0 165 338 77 250 4.62e-27 114
MS.gene22612.t1 AT1G77740 32.749 171 115 0 96 266 77 247 5.01e-22 98.6
MS.gene22612.t1 AT1G77740 27.011 174 122 1 211 384 77 245 1.40e-13 72.8
MS.gene22612.t1 AT1G77740 38.286 175 108 0 23 197 73 247 8.82e-28 115
MS.gene22612.t1 AT1G77740 35.632 174 112 0 165 338 77 250 4.62e-27 114
MS.gene22612.t1 AT1G77740 32.749 171 115 0 96 266 77 247 5.01e-22 98.6
MS.gene22612.t1 AT1G77740 27.011 174 122 1 211 384 77 245 1.40e-13 72.8
MS.gene22612.t1 AT2G41210 31.373 255 138 4 8 259 59 279 1.90e-25 108
MS.gene22612.t1 AT2G41210 31.606 193 131 1 90 282 64 255 6.08e-23 101
MS.gene22612.t1 AT2G41210 30.734 218 140 3 165 379 70 279 3.18e-22 99.4
MS.gene22612.t1 AT2G41210 31.694 183 119 2 209 390 68 245 1.35e-19 91.3
MS.gene22612.t1 AT2G26420 35.450 189 99 1 20 208 46 211 5.36e-25 107
MS.gene22612.t1 AT2G26420 35.625 160 103 0 166 325 54 213 1.62e-22 100
MS.gene22612.t1 AT2G26420 33.702 181 97 1 97 277 54 211 3.26e-21 96.3
MS.gene22612.t1 AT2G26420 30.636 173 69 2 235 384 54 198 7.93e-18 85.9
MS.gene22612.t1 AT2G26420 35.450 189 99 1 20 208 46 211 7.05e-25 107
MS.gene22612.t1 AT2G26420 35.625 160 103 0 166 325 54 213 2.12e-22 99.8
MS.gene22612.t1 AT2G26420 33.702 181 97 1 97 277 54 211 4.27e-21 95.9
MS.gene22612.t1 AT2G26420 30.636 173 69 2 235 384 54 198 8.79e-18 85.9
MS.gene22612.t1 AT2G26420 35.450 189 99 1 20 208 46 211 7.05e-25 107
MS.gene22612.t1 AT2G26420 35.625 160 103 0 166 325 54 213 2.12e-22 99.8
MS.gene22612.t1 AT2G26420 33.702 181 97 1 97 277 54 211 4.27e-21 95.9
MS.gene22612.t1 AT2G26420 30.636 173 69 2 235 384 54 198 8.79e-18 85.9
MS.gene22612.t1 AT3G56960 34.031 191 125 1 23 213 68 257 2.32e-24 105
MS.gene22612.t1 AT3G56960 32.093 215 135 3 148 357 51 259 2.10e-23 102
MS.gene22612.t1 AT3G56960 31.088 193 132 1 90 282 66 257 7.55e-23 101
MS.gene22612.t1 AT3G56960 31.522 184 126 0 71 254 70 253 5.54e-20 92.4
MS.gene22612.t1 AT3G56960 31.148 183 120 2 209 390 70 247 3.76e-19 90.1
MS.gene22612.t1 AT3G56960 29.936 157 105 1 228 384 66 217 1.02e-15 79.7
MS.gene22612.t1 AT3G56960 34.031 191 125 1 23 213 68 257 2.32e-24 105
MS.gene22612.t1 AT3G56960 32.093 215 135 3 148 357 51 259 2.10e-23 102
MS.gene22612.t1 AT3G56960 31.088 193 132 1 90 282 66 257 7.55e-23 101
MS.gene22612.t1 AT3G56960 31.522 184 126 0 71 254 70 253 5.54e-20 92.4
MS.gene22612.t1 AT3G56960 31.148 183 120 2 209 390 70 247 3.76e-19 90.1
MS.gene22612.t1 AT3G56960 29.936 157 105 1 228 384 66 217 1.02e-15 79.7
MS.gene22612.t1 AT2G35170 32.609 184 101 1 30 213 229 389 4.04e-17 83.2
MS.gene22612.t1 AT2G35170 32.386 176 117 1 114 287 219 394 9.36e-17 82.4
MS.gene22612.t1 AT2G35170 28.125 256 148 5 138 388 200 424 1.99e-16 81.3
MS.gene22612.t1 AT2G35170 37.069 116 73 0 29 144 274 389 9.23e-14 73.2
MS.gene22612.t1 AT4G17080 33.333 186 101 1 28 213 258 420 4.79e-17 83.2
MS.gene22612.t1 AT4G17080 28.819 288 165 5 2 287 176 425 1.40e-16 81.6
MS.gene22612.t1 AT4G17080 29.858 211 120 2 165 375 257 439 4.62e-15 77.0
MS.gene22612.t1 AT4G17080 28.804 184 131 0 141 324 256 439 1.09e-13 72.8
MS.gene22612.t1 AT1G77660 31.443 194 110 1 26 219 177 347 1.03e-16 81.6
MS.gene22612.t1 AT1G77660 31.606 193 109 1 96 288 178 347 9.27e-15 75.9
MS.gene22612.t1 AT1G77660 29.500 200 113 2 165 364 178 349 1.73e-13 72.0
MS.gene22612.t1 AT1G77660 27.273 209 139 1 136 344 172 367 1.33e-12 69.3
MS.gene22612.t1 AT1G21920 30.729 192 110 1 28 219 175 343 1.45e-15 77.8
MS.gene22612.t1 AT1G21920 31.088 193 110 2 96 288 174 343 7.90e-14 72.8
MS.gene22612.t1 AT1G21920 29.902 204 115 3 165 368 174 349 1.43e-13 72.0
MS.gene22612.t1 AT1G21920 26.455 189 139 0 129 317 161 349 1.67e-11 65.5
MS.gene22612.t1 AT1G21920 30.729 192 110 1 28 219 175 343 2.99e-15 77.4
MS.gene22612.t1 AT1G21920 30.052 193 112 1 96 288 174 343 2.23e-13 71.6
MS.gene22612.t1 AT1G21920 29.902 204 115 3 165 368 174 349 3.21e-13 71.2
MS.gene22612.t1 AT1G21920 26.455 189 139 0 129 317 161 349 5.89e-11 64.3

Find 128 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAACCATTACGGGAATTTC+TGG 0.210327 5.1:+4439791 None:intergenic
GATTTGAGGGTGAATTCTTT+AGG 0.296880 5.1:-4440016 MS.gene22612:CDS
TACGAGGGTGATTGGGTTGA+TGG 0.301936 5.1:-4439876 MS.gene22612:CDS
TATGAGGGTGATTGGGTTGA+TGG 0.335707 5.1:-4440083 MS.gene22612:CDS
CATGAGGGTGATTGGGTTGA+TGG 0.345630 5.1:-4439669 MS.gene22612:CDS
ATGACCATGACGGGAATTCC+TGG 0.376372 5.1:+4439170 None:intergenic
GAACAATACATGAGGGTGAT+TGG 0.382154 5.1:-4439677 MS.gene22612:CDS
TAAGGGTGCCGTAACCATTA+CGG 0.398972 5.1:+4439781 None:intergenic
GAACAATATACGAGGGTGAT+TGG 0.399559 5.1:-4439884 MS.gene22612:CDS
GAACAATCTATGAGGGTGAT+TGG 0.406352 5.1:-4440091 MS.gene22612:CDS
GAACAATATACGAGGCTGAT+TGG 0.411250 5.1:-4439470 MS.gene22612:CDS
CTTAAATGTTTCTTCTGTTG+TGG 0.412382 5.1:-4440331 None:intergenic
AAGAGAAGCATCTTCCAAAT+GGG 0.412714 5.1:-4440181 MS.gene22612:CDS
GTCAAATGGAACAATATATG+AGG 0.414403 5.1:-4439064 MS.gene22612:CDS
AAAGAGAAGCATCTTCCAAA+TGG 0.418571 5.1:-4440182 MS.gene22612:CDS
AAGGGTGCCGTAACCATTAC+GGG 0.419903 5.1:+4439782 None:intergenic
ACCAATGAGGACATCCTCAT+TGG 0.423740 5.1:+4439131 None:intergenic
AACAATATACGAGGCTGATT+GGG 0.429461 5.1:-4439469 MS.gene22612:CDS
TGGGTTGATGGAAGAAGGAC+AGG 0.429827 5.1:-4439657 MS.gene22612:CDS
TGGGTTGATGGAAGAAGGAC+AGG 0.429827 5.1:-4439864 MS.gene22612:CDS
TGGGTTGATGGAAGAAGGAC+AGG 0.429827 5.1:-4440071 MS.gene22612:CDS
CCCTCAAATCTTGCTCCTGA+TGG 0.440677 5.1:+4440029 None:intergenic
GTCAGATGGAAGAATATATG+AGG 0.442982 5.1:-4439271 MS.gene22612:CDS
GGACGGATAATATATCCTTC+AGG 0.443504 5.1:-4439630 MS.gene22612:CDS
TTCTCCAGAAATTCCCGTAA+TGG 0.445162 5.1:-4439795 MS.gene22612:CDS
TCCAATGAGGATGTCCTCAT+TGG 0.446706 5.1:-4439132 MS.gene22612:CDS
CCAATGTAGACATCCCCATT+TGG 0.449414 5.1:+4440167 None:intergenic
AACAATATACGAGGGTGATT+GGG 0.451603 5.1:-4439883 MS.gene22612:CDS
GGAAAGTACACATGGTCATA+TGG 0.461054 5.1:-4439699 MS.gene22612:CDS
GCACCCTTACAAAATCCAAT+GGG 0.467821 5.1:-4439767 MS.gene22612:CDS
AGAAATTCCCGTAATGGTTA+CGG 0.468515 5.1:-4439789 MS.gene22612:CDS
ATTACCTTGCATTGTCCAGC+AGG 0.470935 5.1:+4440285 None:intergenic
CCCTCAAAACTTGCTCCTGA+TGG 0.474150 5.1:+4439408 None:intergenic
GGAAAGTACACATGGTCAAA+TGG 0.477905 5.1:-4439492 MS.gene22612:CDS
TGTCTACATTGGCAATTTCA+AGG 0.478538 5.1:-4440156 MS.gene22612:CDS
AAGAGTCCCGTGACCATGAC+GGG 0.482174 5.1:+4439989 None:intergenic
CCATCAGGAGCAAGATTTGA+GGG 0.487161 5.1:-4440029 MS.gene22612:CDS
GGAAAGGAAACATGGTCAAA+TGG 0.487474 5.1:-4439078 MS.gene22612:CDS
GGACTCTTGCAAAATCCAAT+CGG 0.491950 5.1:-4439974 MS.gene22612:CDS
AGAGTGATCTTATCCATGGC+AGG 0.494985 5.1:-4439515 MS.gene22612:CDS
CAGGGTGCCATGACCATGAC+GGG 0.504704 5.1:+4439161 None:intergenic
GGAATTCCCGTCATGGTCAC+GGG 0.507880 5.1:-4439995 MS.gene22612:CDS
GGACTGGTCATATGTCCATC+AGG 0.508796 5.1:-4440044 MS.gene22612:CDS
GTGATTGGGTTGATGGAAGA+AGG 0.511335 5.1:-4439662 MS.gene22612:CDS
GTGATTGGGTTGATGGAAGA+AGG 0.511335 5.1:-4439869 MS.gene22612:CDS
GTGATTGGGTTGATGGAAGA+AGG 0.511335 5.1:-4440076 MS.gene22612:CDS
AAGGGTGCCATGACCATGAC+GGG 0.516134 5.1:+4439368 None:intergenic
AACAATACATGAGGGTGATT+GGG 0.516896 5.1:-4439676 MS.gene22612:CDS
GGACGGATCATATATCCATC+AGG 0.518109 5.1:-4439423 MS.gene22612:CDS
AACAATCTATGAGGGTGATT+GGG 0.519736 5.1:-4440090 MS.gene22612:CDS
AGGAATTCCCGTCATGGTCA+CGG 0.520182 5.1:-4439996 MS.gene22612:CDS
GTCTACATTGGCAATTTCAA+GGG 0.520936 5.1:-4440155 MS.gene22612:CDS
GACTCTTGCAAAATCCAATC+GGG 0.525131 5.1:-4439973 MS.gene22612:CDS
GTCAAGTGGAACAATCTATG+AGG 0.526197 5.1:-4440099 MS.gene22612:CDS
ATGTTTCCTTTCCCTGCGAA+CGG 0.533624 5.1:+4439088 None:intergenic
TCCATCAGGAGCAAGATTTG+AGG 0.534370 5.1:-4440030 MS.gene22612:CDS
TGGGTTGATGAACAAAGGAC+AGG 0.535796 5.1:-4439450 MS.gene22612:CDS
ATGTGTACTTTCCCTTGCCA+TGG 0.537930 5.1:+4439295 None:intergenic
AGGAATTCCCGTCATGGTCA+TGG 0.538746 5.1:-4439168 MS.gene22612:CDS
AGGAATTCCCGTCATGGTCA+TGG 0.538746 5.1:-4439375 MS.gene22612:CDS
GTGTGTACTTTCCCTTGCCA+TGG 0.543926 5.1:+4439916 None:intergenic
TTCTTTAGGAATTCCCGTCA+TGG 0.546886 5.1:-4440002 MS.gene22612:CDS
AGGACGGATAATATATCCAT+CGG 0.554267 5.1:-4439838 MS.gene22612:CDS
ATGTGTACTTTCCCCTGCCA+TGG 0.555768 5.1:+4439502 None:intergenic
TTCTCTAGAAATTCTCGTCA+TGG 0.556256 5.1:-4439588 MS.gene22612:CDS
GGACGGATAATATATCCATC+GGG 0.558980 5.1:-4439837 MS.gene22612:CDS
ACCAATGTAGACATCCCGAT+TGG 0.559139 5.1:+4439959 None:intergenic
ACACCCTTACAAAATCTGAT+GGG 0.560555 5.1:-4439560 MS.gene22612:CDS
TCCAATCGGGATGTCTACAT+TGG 0.561508 5.1:-4439960 MS.gene22612:CDS
CCAAATGGGGATGTCTACAT+TGG 0.565899 5.1:-4440167 MS.gene22612:CDS
GACACCCTTACAAAATCTGA+TGG 0.566110 5.1:-4439561 MS.gene22612:CDS
GGAAAGTACACATGGTCAGA+TGG 0.566527 5.1:-4439285 MS.gene22612:CDS
ATGTGTACTTTCCCTTGCCG+TGG 0.568930 5.1:+4439709 None:intergenic
GATGGAAGAAGGACAGGGAA+AGG 0.569351 5.1:-4439651 MS.gene22612:CDS
GATGGAAGAAGGACAGGGAA+AGG 0.569351 5.1:-4439858 MS.gene22612:CDS
GATGGAAGAAGGACAGGGAA+AGG 0.569351 5.1:-4440065 MS.gene22612:CDS
GGAAAGTACACACGGTCAAG+TGG 0.571773 5.1:-4439906 MS.gene22612:CDS
GGCACCCTTACAAAATCCAA+TGG 0.573895 5.1:-4439768 MS.gene22612:CDS
TGTTCCTGCTGGACAATGCA+AGG 0.575457 5.1:-4440289 MS.gene22612:intron
AACAAAGGACAGGGAAAGGA+CGG 0.580505 5.1:-4439440 MS.gene22612:CDS
GGCACCCTTACAAAATCCGA+TGG 0.582303 5.1:-4439354 MS.gene22612:CDS
TCTGATGGGGATGTCTACGT+TGG 0.583446 5.1:-4439546 MS.gene22612:CDS
TTCGAGAGTGATCTTATCCA+TGG 0.587728 5.1:-4439519 MS.gene22612:CDS
GAGTGATCTTATCCATGGCA+GGG 0.590393 5.1:-4439514 MS.gene22612:CDS
GAAGAAGGACAGGGAAAGGA+CGG 0.592444 5.1:-4439647 MS.gene22612:CDS
GAAGAAGGACAGGGAAAGGA+CGG 0.592444 5.1:-4439854 MS.gene22612:CDS
GTTCGCAGGGAAAGGAAACA+TGG 0.594776 5.1:-4439086 MS.gene22612:CDS
GCACCCTTACAAAATCCGAT+GGG 0.598099 5.1:-4439353 MS.gene22612:CDS
TTCTCCAGGAATTCCCGTCA+TGG 0.598112 5.1:-4439174 MS.gene22612:CDS
GGAAAGTACACATGGTCAAG+TGG 0.602851 5.1:-4440113 MS.gene22612:CDS
TCCAATGGGGATATCTACGT+TGG 0.606316 5.1:-4439753 MS.gene22612:CDS
TTCCTCAGGAATTCCCGTCA+TGG 0.606439 5.1:-4439381 MS.gene22612:CDS
TCTACATTGGCAATTTCAAG+GGG 0.606532 5.1:-4440154 MS.gene22612:CDS
ACCATTGTAGATATCCCCAT+CGG 0.610406 5.1:+4439338 None:intergenic
GTCATATGGAACAATACATG+AGG 0.611545 5.1:-4439685 MS.gene22612:CDS
TCAAATGGAACAATATATGA+GGG 0.613208 5.1:-4439063 MS.gene22612:CDS
TCAGGGTGCCATGACCATGA+CGG 0.613527 5.1:+4439160 None:intergenic
ACCAACGTAGATATCCCCAT+TGG 0.614276 5.1:+4439752 None:intergenic
TAAGGGTGCCATGACCATGA+CGG 0.614444 5.1:+4439367 None:intergenic
AGTGATCTTATCCATGGCAG+GGG 0.614869 5.1:-4439513 MS.gene22612:CDS
CTGATTGGGTTGATGAACAA+AGG 0.623545 5.1:-4439455 MS.gene22612:CDS
TCCGATGGGGATATCTACAA+TGG 0.627765 5.1:-4439339 MS.gene22612:CDS
CAAGAGTCCCGTGACCATGA+CGG 0.630721 5.1:+4439988 None:intergenic
GATGAACAAAGGACAGGGAA+AGG 0.632593 5.1:-4439444 MS.gene22612:CDS
GACCATGACGGGAATTCCTG+AGG 0.633413 5.1:+4439379 None:intergenic
GAGGGTAAATTATCTGACCC+TGG 0.635575 5.1:-4439045 MS.gene22612:intron
CACCCTTACAAAATCTGATG+GGG 0.635868 5.1:-4439559 MS.gene22612:CDS
AAGAAGGACAGGGAAAGGAC+TGG 0.642826 5.1:-4440060 MS.gene22612:CDS
TCAAGTGGAACAATCTATGA+GGG 0.643760 5.1:-4440098 MS.gene22612:CDS
AGAGAAGCATCTTCCAAATG+GGG 0.644106 5.1:-4440180 MS.gene22612:CDS
TCAGATGGAAGAATATATGA+GGG 0.646627 5.1:-4439270 MS.gene22612:intron
CACCCTGACAAAATCCAATG+AGG 0.657250 5.1:-4439145 MS.gene22612:CDS
TACTCTCGAAGTTACCAATG+AGG 0.675261 5.1:+4439118 None:intergenic
TCATATGGAACAATACATGA+GGG 0.682536 5.1:-4439684 MS.gene22612:CDS
GGGTTGATGAACAAAGGACA+GGG 0.685284 5.1:-4439449 MS.gene22612:CDS
GGGTTGATGGAAGAAGGACA+GGG 0.687973 5.1:-4439656 MS.gene22612:CDS
GGGTTGATGGAAGAAGGACA+GGG 0.687973 5.1:-4439863 MS.gene22612:CDS
GGGTTGATGGAAGAAGGACA+GGG 0.687973 5.1:-4440070 MS.gene22612:CDS
CACCCTTACAAAATCCGATG+GGG 0.690436 5.1:-4439352 MS.gene22612:CDS
ATGGCAAGGGAAAGTACACA+TGG 0.692208 5.1:-4439293 MS.gene22612:CDS
ATGGCAGGGGAAAGTACACA+TGG 0.692208 5.1:-4439500 MS.gene22612:CDS
ATGGCAAGGGAAAGTACACA+TGG 0.692208 5.1:-4440121 MS.gene22612:CDS
GTCAAGTGGAACAATATACG+AGG 0.697921 5.1:-4439892 MS.gene22612:CDS
ACGGCAAGGGAAAGTACACA+TGG 0.716405 5.1:-4439707 MS.gene22612:CDS
CACCCTTACAAAATCCAATG+GGG 0.726402 5.1:-4439766 MS.gene22612:CDS
ATGGCAAGGGAAAGTACACA+CGG 0.733793 5.1:-4439914 MS.gene22612:CDS
GTCAAATGGAACAATATACG+AGG 0.734488 5.1:-4439478 MS.gene22612:CDS
TCAAGTGGAACAATATACGA+GGG 0.735927 5.1:-4439891 MS.gene22612:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTATATTAACTTAATTT+GGG + chr5.1:4440066-4440085 None:intergenic 10.0%
!! TTTCTTATATTAACTTAATT+TGG + chr5.1:4440067-4440086 None:intergenic 10.0%
!! ATGACAATTATATAATACAT+GGG + chr5.1:4438676-4438695 None:intergenic 15.0%
!!! TTTTATCCTTTTTAGTATTA+TGG - chr5.1:4439891-4439910 MS.gene22612:CDS 15.0%
!! AAAGGATAAAATAATTTACC+AGG + chr5.1:4439882-4439901 None:intergenic 20.0%
!! AAGGATAAAATAATTTACCA+GGG + chr5.1:4439881-4439900 None:intergenic 20.0%
!! AATTATTACCTTTCTTTCAA+TGG - chr5.1:4439948-4439967 MS.gene22612:CDS 20.0%
!! ATTAAACACATAACTTATAC+TGG + chr5.1:4440102-4440121 None:intergenic 20.0%
!! GATGACAATTATATAATACA+TGG + chr5.1:4438677-4438696 None:intergenic 20.0%
!!! AAATACTGACTGAAATATTT+CGG - chr5.1:4440141-4440160 MS.gene22612:CDS 20.0%
!!! GTTTTTCCATAATACTAAAA+AGG + chr5.1:4439900-4439919 None:intergenic 20.0%
! ACTTATGTAGCATATATTCA+TGG - chr5.1:4439918-4439937 MS.gene22612:CDS 25.0%
! ATAGATAGAGAATGTAAACA+TGG - chr5.1:4440165-4440184 MS.gene22612:CDS 25.0%
! ATATAGAACCATTGAAAGAA+AGG + chr5.1:4439959-4439978 None:intergenic 25.0%
! TCAAATGGAACAATATATGA+GGG - chr5.1:4439843-4439862 MS.gene22612:CDS 25.0%
!! ACACTTAGTCAAACAATTTT+CGG + chr5.1:4440010-4440029 None:intergenic 25.0%
!! TTCAAGAATAATCTTTTCCA+TGG - chr5.1:4438973-4438992 MS.gene22612:intron 25.0%
AAGAATATATGAGGGTGATT+AGG - chr5.1:4439644-4439663 MS.gene22612:CDS 30.0%
GATGTATAACTGAGACAAAT+AGG - chr5.1:4440207-4440226 MS.gene22612:intron 30.0%
GTCAAATGGAACAATATATG+AGG - chr5.1:4439842-4439861 MS.gene22612:CDS 30.0%
TCAGATGGAAGAATATATGA+GGG - chr5.1:4439636-4439655 MS.gene22612:CDS 30.0%
TCATATGGAACAATACATGA+GGG - chr5.1:4439222-4439241 MS.gene22612:intron 30.0%
! AATAATCTTTTCCATGGCAA+GGG - chr5.1:4438979-4438998 MS.gene22612:intron 30.0%
! TTCAAGAGTGATATTTTCCA+TGG - chr5.1:4439594-4439613 MS.gene22612:CDS 30.0%
! TTTGAGAATGATCTTTTCCA+CGG - chr5.1:4439180-4439199 MS.gene22612:CDS 30.0%
AACAATACATGAGGGTGATT+GGG - chr5.1:4439230-4439249 MS.gene22612:intron 35.0%
AACAATATACGAGGCTGATT+GGG - chr5.1:4439437-4439456 MS.gene22612:CDS 35.0%
AACAATATACGAGGGTGATT+GGG - chr5.1:4439023-4439042 MS.gene22612:intron 35.0%
AACAATCTATGAGGGTGATT+GGG - chr5.1:4438816-4438835 MS.gene22612:intron 35.0%
AATACATGGGTATAGAACAG+TGG + chr5.1:4438663-4438682 None:intergenic 35.0%
ACACCCTTACAAAATCTGAT+GGG - chr5.1:4439346-4439365 MS.gene22612:CDS 35.0%
AGAAATTCCCGTAATGGTTA+CGG - chr5.1:4439117-4439136 MS.gene22612:CDS 35.0%
AGATGCTTCTCTTTAAACCT+AGG + chr5.1:4438718-4438737 None:intergenic 35.0%
AGGACGGATAATATATCCAT+CGG - chr5.1:4439068-4439087 MS.gene22612:CDS 35.0%
CAAATAGGCGGATAAAGATA+TGG - chr5.1:4440222-4440241 MS.gene22612:intron 35.0%
GATTTGAGGGTGAATTCTTT+AGG - chr5.1:4438890-4438909 MS.gene22612:intron 35.0%
GCATCATATGTACGTGTTTA+TGG - chr5.1:4440266-4440285 MS.gene22612:intron 35.0%
GTATAACTGAGACAAATAGG+CGG - chr5.1:4440210-4440229 MS.gene22612:intron 35.0%
GTCAAATGGAACAATATACG+AGG - chr5.1:4439428-4439447 MS.gene22612:CDS 35.0%
GTCAGATGGAAGAATATATG+AGG - chr5.1:4439635-4439654 MS.gene22612:CDS 35.0%
GTCATATGGAACAATACATG+AGG - chr5.1:4439221-4439240 MS.gene22612:intron 35.0%
GTCTACATTGGCAATTTCAA+GGG - chr5.1:4438751-4438770 MS.gene22612:intron 35.0%
TAAGTGTATTCATGCGTACT+TGG - chr5.1:4440023-4440042 MS.gene22612:CDS 35.0%
TCAAGTGGAACAATATACGA+GGG - chr5.1:4439015-4439034 MS.gene22612:intron 35.0%
TCAAGTGGAACAATCTATGA+GGG - chr5.1:4438808-4438827 MS.gene22612:intron 35.0%
TCTACATTGGCAATTTCAAG+GGG - chr5.1:4438752-4438771 MS.gene22612:intron 35.0%
TGTCTACATTGGCAATTTCA+AGG - chr5.1:4438750-4438769 MS.gene22612:intron 35.0%
! ACATTTTTACTTGTTCCTGC+TGG - chr5.1:4438606-4438625 MS.gene22612:intron 35.0%
! AGTGATATTTTCCATGGCAA+GGG - chr5.1:4439600-4439619 MS.gene22612:CDS 35.0%
! ATCCCCATCAGATTTTGTAA+GGG + chr5.1:4439352-4439371 None:intergenic 35.0%
! ATCCCCATTGGATTTTGTAA+GGG + chr5.1:4439145-4439164 None:intergenic 35.0%
! ATCCTCATTGGATTTTGTCA+GGG + chr5.1:4439766-4439785 None:intergenic 35.0%
! CATTGTTTCTTGTAATGCCT+AGG - chr5.1:4438698-4438717 MS.gene22612:intron 35.0%
! CCTTCAGGAACAATTTTTGA+GGG - chr5.1:4439291-4439310 MS.gene22612:CDS 35.0%
! GAATAATCTTTTCCATGGCA+AGG - chr5.1:4438978-4438997 MS.gene22612:intron 35.0%
! TATCCCCATTGGATTTTGTA+AGG + chr5.1:4439146-4439165 None:intergenic 35.0%
! TCCTTCAGGAACAATTTTTG+AGG - chr5.1:4439290-4439309 MS.gene22612:CDS 35.0%
! TTCTCTAGAAATTCTCGTCA+TGG - chr5.1:4439318-4439337 MS.gene22612:CDS 35.0%
!! AAAGAGAAGCATCTTCCAAA+TGG - chr5.1:4438724-4438743 MS.gene22612:intron 35.0%
!! AAGAGAAGCATCTTCCAAAT+GGG - chr5.1:4438725-4438744 MS.gene22612:intron 35.0%
!!! TTCAAGGGGAAACTTTTTCA+TGG - chr5.1:4438766-4438785 MS.gene22612:intron 35.0%
ACCATTGTAGATATCCCCAT+CGG + chr5.1:4439571-4439590 None:intergenic 40.0%
CACCCTTACAAAATCCAATG+GGG - chr5.1:4439140-4439159 MS.gene22612:CDS 40.0%
CACCCTTACAAAATCTGATG+GGG - chr5.1:4439347-4439366 MS.gene22612:CDS 40.0%
CCCTCAAAAATTGTTCCTGA+AGG + chr5.1:4439294-4439313 None:intergenic 40.0%
GAACAATACATGAGGGTGAT+TGG - chr5.1:4439229-4439248 MS.gene22612:intron 40.0%
GAACAATATACGAGGCTGAT+TGG - chr5.1:4439436-4439455 MS.gene22612:CDS 40.0%
GAACAATATACGAGGGTGAT+TGG - chr5.1:4439022-4439041 MS.gene22612:intron 40.0%
GAACAATCTATGAGGGTGAT+TGG - chr5.1:4438815-4438834 MS.gene22612:intron 40.0%
GACACCCTTACAAAATCTGA+TGG - chr5.1:4439345-4439364 MS.gene22612:CDS 40.0%
GACTCTTGCAAAATCCAATC+GGG - chr5.1:4438933-4438952 MS.gene22612:intron 40.0%
GCACCCTTACAAAATCCAAT+GGG - chr5.1:4439139-4439158 MS.gene22612:CDS 40.0%
GGAAAGGAAACATGGTCAAA+TGG - chr5.1:4439828-4439847 MS.gene22612:CDS 40.0%
GGACGGATAATATATCCATC+GGG - chr5.1:4439069-4439088 MS.gene22612:CDS 40.0%
GGACGGATAATATATCCTTC+AGG - chr5.1:4439276-4439295 MS.gene22612:CDS 40.0%
GGACTCTTGCAAAATCCAAT+CGG - chr5.1:4438932-4438951 MS.gene22612:intron 40.0%
GTAACCATTACGGGAATTTC+TGG + chr5.1:4439118-4439137 None:intergenic 40.0%
GTCAAGTGGAACAATATACG+AGG - chr5.1:4439014-4439033 MS.gene22612:intron 40.0%
GTCAAGTGGAACAATCTATG+AGG - chr5.1:4438807-4438826 MS.gene22612:intron 40.0%
TACTCTCGAAGTTACCAATG+AGG + chr5.1:4439791-4439810 None:intergenic 40.0%
TCCTCAAAAATTGTTCCCGA+TGG + chr5.1:4439087-4439106 None:intergenic 40.0%
TTCGAGAGTGATCTTATCCA+TGG - chr5.1:4439387-4439406 MS.gene22612:CDS 40.0%
TTCTCCAGAAATTCCCGTAA+TGG - chr5.1:4439111-4439130 MS.gene22612:CDS 40.0%
! AATGATCTTTTCCACGGCAA+GGG - chr5.1:4439186-4439205 MS.gene22612:CDS 40.0%
! AGTAATCTTTTCCGTTCGCA+GGG - chr5.1:4439807-4439826 MS.gene22612:CDS 40.0%
! ATCCCCATCGGATTTTGTAA+GGG + chr5.1:4439559-4439578 None:intergenic 40.0%
! CATCCCCATCAGATTTTGTA+AGG + chr5.1:4439353-4439372 None:intergenic 40.0%
! CATCCTCATTGGATTTTGTC+AGG + chr5.1:4439767-4439786 None:intergenic 40.0%
! CTCTCAAAACTTGTTCCTGA+TGG + chr5.1:4439708-4439727 None:intergenic 40.0%
! GAGTGATATTTTCCATGGCA+AGG - chr5.1:4439599-4439618 MS.gene22612:CDS 40.0%
! GGAAAGTACACATGGTCAAA+TGG - chr5.1:4439414-4439433 MS.gene22612:CDS 40.0%
! GGAAAGTACACATGGTCATA+TGG - chr5.1:4439207-4439226 MS.gene22612:intron 40.0%
! GTCAAACAATTTTCGGCACA+AGG + chr5.1:4440003-4440022 None:intergenic 40.0%
! TATCCCCATCGGATTTTGTA+AGG + chr5.1:4439560-4439579 None:intergenic 40.0%
! TCCATCGGGAACAATTTTTG+AGG - chr5.1:4439083-4439102 MS.gene22612:CDS 40.0%
! TTCTTTAGGAATTCCCGTCA+TGG - chr5.1:4438904-4438923 MS.gene22612:intron 40.0%
!! AGAGAAGCATCTTCCAAATG+GGG - chr5.1:4438726-4438745 MS.gene22612:intron 40.0%
!! CTGATTGGGTTGATGAACAA+AGG - chr5.1:4439451-4439470 MS.gene22612:CDS 40.0%
!! GTGATTAGGTTGATGGAAGA+AGG - chr5.1:4439658-4439677 MS.gene22612:CDS 40.0%
!! TATGAGGGTGATTAGGTTGA+TGG - chr5.1:4439651-4439670 MS.gene22612:CDS 40.0%
!!! GGGAAACTTTTTCATGGCAA+GGG - chr5.1:4438772-4438791 MS.gene22612:intron 40.0%
!!! GTTTTGAGAGTGAATTCTCC+AGG - chr5.1:4439718-4439737 MS.gene22612:CDS 40.0%
AACAAAGGACAGGGAAAGGA+CGG - chr5.1:4439466-4439485 MS.gene22612:CDS 45.0%
ACCAACGTAGATATCCCCAT+TGG + chr5.1:4439157-4439176 None:intergenic 45.0%
ACCAATGAGGACATCCTCAT+TGG + chr5.1:4439778-4439797 None:intergenic 45.0%
ACCAATGTAGACATCCCGAT+TGG + chr5.1:4438950-4438969 None:intergenic 45.0%
AGAGTGATCTTATCCATGGC+AGG - chr5.1:4439391-4439410 MS.gene22612:CDS 45.0%
AGTGATCTTATCCATGGCAG+GGG - chr5.1:4439393-4439412 MS.gene22612:CDS 45.0%
ATGTGTACTTTCCCTTGCCA+TGG + chr5.1:4438786-4438805 None:intergenic 45.0%
ATGTTTCCTTTCCCTGCGAA+CGG + chr5.1:4439821-4439840 None:intergenic 45.0%
ATTACCTTGCATTGTCCAGC+AGG + chr5.1:4438624-4438643 None:intergenic 45.0%
CACCCTGACAAAATCCAATG+AGG - chr5.1:4439761-4439780 MS.gene22612:CDS 45.0%
CACCCTTACAAAATCCGATG+GGG - chr5.1:4439554-4439573 MS.gene22612:CDS 45.0%
CCAAATGGGGATGTCTACAT+TGG - chr5.1:4438739-4438758 MS.gene22612:intron 45.0%
CCAATGTAGACATCCCCATT+TGG + chr5.1:4438742-4438761 None:intergenic 45.0%
CCATCAGGAGCAAGATTTGA+GGG - chr5.1:4438877-4438896 MS.gene22612:intron 45.0%
GAAGAAGGACAGAGAAAGGA+CGG - chr5.1:4439673-4439692 MS.gene22612:CDS 45.0%
GAGGGTAAATTATCTGACCC+TGG - chr5.1:4439861-4439880 MS.gene22612:CDS 45.0%
GAGTGATCTTATCCATGGCA+GGG - chr5.1:4439392-4439411 MS.gene22612:CDS 45.0%
GATGAACAAAGGACAGGGAA+AGG - chr5.1:4439462-4439481 MS.gene22612:CDS 45.0%
GATGGAAGAAGGACAGAGAA+AGG - chr5.1:4439669-4439688 MS.gene22612:CDS 45.0%
GCACCCTTACAAAATCCGAT+GGG - chr5.1:4439553-4439572 MS.gene22612:CDS 45.0%
GGACGGATCATATATCCATC+AGG - chr5.1:4439483-4439502 MS.gene22612:CDS 45.0%
GGACGGATGATATATCCATC+AGG - chr5.1:4439690-4439709 MS.gene22612:CDS 45.0%
GGCACCCTTACAAAATCCAA+TGG - chr5.1:4439138-4439157 MS.gene22612:CDS 45.0%
TCCAATCGGGATGTCTACAT+TGG - chr5.1:4438946-4438965 MS.gene22612:intron 45.0%
TCCAATGAGGATGTCCTCAT+TGG - chr5.1:4439774-4439793 MS.gene22612:CDS 45.0%
TCCAATGGGGATATCTACGT+TGG - chr5.1:4439153-4439172 MS.gene22612:CDS 45.0%
TCCATCAGGAGCAAGATTTG+AGG - chr5.1:4438876-4438895 MS.gene22612:intron 45.0%
TCCGATGGGGATATCTACAA+TGG - chr5.1:4439567-4439586 MS.gene22612:CDS 45.0%
! ATGGCAAGGGAAAGTACACA+CGG - chr5.1:4438785-4438804 MS.gene22612:intron 45.0%
! ATGGCAAGGGAAAGTACACA+TGG - chr5.1:4438785-4438804 MS.gene22612:intron 45.0%
! GAATGATCTTTTCCACGGCA+AGG - chr5.1:4439185-4439204 MS.gene22612:CDS 45.0%
! GAGTAATCTTTTCCGTTCGC+AGG - chr5.1:4439806-4439825 MS.gene22612:CDS 45.0%
! GGAAAGTACACATGGTCAAG+TGG - chr5.1:4438793-4438812 MS.gene22612:intron 45.0%
! GGAAAGTACACATGGTCAGA+TGG - chr5.1:4439621-4439640 MS.gene22612:CDS 45.0%
! TCCATCAGGAGCAAGTTTTG+AGG - chr5.1:4439497-4439516 MS.gene22612:CDS 45.0%
!! CCATCAGGAGCAAGTTTTGA+GGG - chr5.1:4439498-4439517 MS.gene22612:CDS 45.0%
!! GGGTTGATGAACAAAGGACA+GGG - chr5.1:4439457-4439476 MS.gene22612:CDS 45.0%
!! GTGATTGGGTTGATGGAAGA+AGG - chr5.1:4438830-4438849 MS.gene22612:intron 45.0%
!! TAAGGGTGCCGTAACCATTA+CGG + chr5.1:4439128-4439147 None:intergenic 45.0%
!! TATGAGGGTGATTGGGTTGA+TGG - chr5.1:4438823-4438842 MS.gene22612:intron 45.0%
!! TGGGTTGATGAACAAAGGAC+AGG - chr5.1:4439456-4439475 MS.gene22612:CDS 45.0%
!!! GGGGAAACTTTTTCATGGCA+AGG - chr5.1:4438771-4438790 MS.gene22612:intron 45.0%
!!! GTTTTGAGGGTGAATTCCTC+AGG - chr5.1:4439511-4439530 MS.gene22612:CDS 45.0%
AAGAAGGACAGGGAAAGGAC+TGG - chr5.1:4438846-4438865 MS.gene22612:intron 50.0%
AGGAATTCCCGTCATGGTCA+CGG - chr5.1:4438910-4438929 MS.gene22612:intron 50.0%
AGGAATTCCCGTCATGGTCA+TGG - chr5.1:4438910-4438929 MS.gene22612:intron 50.0%
ATGTGTACTTTCCCCTGCCA+TGG + chr5.1:4439407-4439426 None:intergenic 50.0%
ATGTGTACTTTCCCTTGCCG+TGG + chr5.1:4439200-4439219 None:intergenic 50.0%
CCCTCAAATCTTGCTCCTGA+TGG + chr5.1:4438880-4438899 None:intergenic 50.0%
GAAGAAGGACAGGGAAAGGA+CGG - chr5.1:4438845-4438864 MS.gene22612:intron 50.0%
GATGGAAGAAGGACAGGGAA+AGG - chr5.1:4438841-4438860 MS.gene22612:intron 50.0%
GGCACCCTTACAAAATCCGA+TGG - chr5.1:4439552-4439571 MS.gene22612:CDS 50.0%
GTGTGTACTTTCCCTTGCCA+TGG + chr5.1:4438993-4439012 None:intergenic 50.0%
GTTCGCAGGGAAAGGAAACA+TGG - chr5.1:4439820-4439839 MS.gene22612:CDS 50.0%
TCTGATGGGGATGTCTACGT+TGG - chr5.1:4439360-4439379 MS.gene22612:CDS 50.0%
TGTTCCTGCTGGACAATGCA+AGG - chr5.1:4438617-4438636 MS.gene22612:intron 50.0%
TTCCTCAGGAATTCCCGTCA+TGG - chr5.1:4439525-4439544 MS.gene22612:CDS 50.0%
TTCTCCAGGAATTCCCGTCA+TGG - chr5.1:4439732-4439751 MS.gene22612:CDS 50.0%
! ACGGCAAGGGAAAGTACACA+TGG - chr5.1:4439199-4439218 MS.gene22612:intron 50.0%
! ATGACCATGACGGGAATTCC+TGG + chr5.1:4439532-4439551 None:intergenic 50.0%
! ATGGCAGGGGAAAGTACACA+TGG - chr5.1:4439406-4439425 MS.gene22612:CDS 50.0%
! CCCTCAAAACTTGCTCCTGA+TGG + chr5.1:4439501-4439520 None:intergenic 50.0%
! GGAAAGTACACACGGTCAAG+TGG - chr5.1:4439000-4439019 MS.gene22612:intron 50.0%
! TCTTTTCCGTTCGCAGGGAA+AGG - chr5.1:4439812-4439831 MS.gene22612:CDS 50.0%
!! AAGGGTGCCGTAACCATTAC+GGG + chr5.1:4439127-4439146 None:intergenic 50.0%
!! CATGAGGGTGATTGGGTTGA+TGG - chr5.1:4439237-4439256 MS.gene22612:intron 50.0%
!! GGACTGGTCATATGTCCATC+AGG - chr5.1:4438862-4438881 MS.gene22612:intron 50.0%
!! GGGTTGATGGAAGAAGGACA+GGG - chr5.1:4438836-4438855 MS.gene22612:intron 50.0%
!! TAAGGGTGCCATGACCATGA+CGG + chr5.1:4439542-4439561 None:intergenic 50.0%
!! TACGAGGGTGATTGGGTTGA+TGG - chr5.1:4439030-4439049 MS.gene22612:intron 50.0%
!! TGGGTTGATGGAAGAAGGAC+AGG - chr5.1:4438835-4438854 MS.gene22612:intron 50.0%
AAGAGTCCCGTGACCATGAC+GGG + chr5.1:4438920-4438939 None:intergenic 55.0%
CAAGAGTCCCGTGACCATGA+CGG + chr5.1:4438921-4438940 None:intergenic 55.0%
GGAATTCCCGTCATGGTCAC+GGG - chr5.1:4438911-4438930 MS.gene22612:intron 55.0%
! GACCATGACGGGAATTCCTG+AGG + chr5.1:4439530-4439549 None:intergenic 55.0%
! TCAGGGTGCCATGACCATGA+CGG + chr5.1:4439749-4439768 None:intergenic 55.0%
!! AAGGGTGCCATGACCATGAC+GGG + chr5.1:4439541-4439560 None:intergenic 55.0%
CGTCGTCACGATCTCTGCGT+AGG + chr5.1:4440326-4440345 None:intergenic 60.0%
! CAGGGTGCCATGACCATGAC+GGG + chr5.1:4439748-4439767 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 4438580 4440348 4438580 ID=MS.gene22612
chr5.1 mRNA 4438580 4440348 4438580 ID=MS.gene22612.t1;Parent=MS.gene22612
chr5.1 exon 4440290 4440348 4440290 ID=MS.gene22612.t1.exon1;Parent=MS.gene22612.t1
chr5.1 CDS 4440290 4440348 4440290 ID=cds.MS.gene22612.t1;Parent=MS.gene22612.t1
chr5.1 exon 4439271 4440208 4439271 ID=MS.gene22612.t1.exon2;Parent=MS.gene22612.t1
chr5.1 CDS 4439271 4440208 4439271 ID=cds.MS.gene22612.t1;Parent=MS.gene22612.t1
chr5.1 exon 4439046 4439216 4439046 ID=MS.gene22612.t1.exon3;Parent=MS.gene22612.t1
chr5.1 CDS 4439046 4439216 4439046 ID=cds.MS.gene22612.t1;Parent=MS.gene22612.t1
chr5.1 exon 4438580 4438596 4438580 ID=MS.gene22612.t1.exon4;Parent=MS.gene22612.t1
chr5.1 CDS 4438580 4438596 4438580 ID=cds.MS.gene22612.t1;Parent=MS.gene22612.t1
Gene Sequence

>MS.gene22612

ATGTTTCTTCTGTTGTGGATTTTAGAACATTTTTACTTGTTCCTGCTGGACAATGCAAGGTAATATTCTTAGAAATCAAACCACTGTTCTATACCCATGTATTATATAATTGTCATCTCATTGTTTCTTGTAATGCCTAGGTTTAAAGAGAAGCATCTTCCAAATGGGGATGTCTACATTGGCAATTTCAAGGGGAAACTTTTTCATGGCAAGGGAAAGTACACATGGTCAAGTGGAACAATCTATGAGGGTGATTGGGTTGATGGAAGAAGGACAGGGAAAGGACTGGTCATATGTCCATCAGGAGCAAGATTTGAGGGTGAATTCTTTAGGAATTCCCGTCATGGTCACGGGACTCTTGCAAAATCCAATCGGGATGTCTACATTGGTAACTTCAAGAATAATCTTTTCCATGGCAAGGGAAAGTACACACGGTCAAGTGGAACAATATACGAGGGTGATTGGGTTGATGGAAGAAGGACAGGGAAAGGACGGATAATATATCCATCGGGAACAATTTTTGAGGATGAATTCTCCAGAAATTCCCGTAATGGTTACGGCACCCTTACAAAATCCAATGGGGATATCTACGTTGGTAACTTTGAGAATGATCTTTTCCACGGCAAGGGAAAGTACACATGGTCATATGGAACAATACATGAGGGTGATTGGGTTGATGGAAGAAGGACAGGGAAAGGACGGATAATATATCCTTCAGGAACAATTTTTGAGGGTGAATTCTCTAGAAATTCTCGTCATGGTCACGACACCCTTACAAAATCTGATGGGGATGTCTACGTTGGAAACTTCGAGAGTGATCTTATCCATGGCAGGGGAAAGTACACATGGTCAAATGGAACAATATACGAGGCTGATTGGGTTGATGAACAAAGGACAGGGAAAGGACGGATCATATATCCATCAGGAGCAAGTTTTGAGGGTGAATTCCTCAGGAATTCCCGTCATGGTCATGGCACCCTTACAAAATCCGATGGGGATATCTACAATGGTAACTTCAAGAGTGATATTTTCCATGGCAAGGGAAAGTACACATGGTCAGATGGAAGAATATATGAGGGTGATTAGGTTGATGGAAGAAGGACAGAGAAAGGACGGATGATATATCCATCAGGAACAAGTTTTGAGAGTGAATTCTCCAGGAATTCCCGTCATGGTCATGGCACCCTGACAAAATCCAATGAGGATGTCCTCATTGGTAACTTCGAGAGTAATCTTTTCCGTTCGCAGGGAAAGGAAACATGGTCAAATGGAACAATATATGAGGGTAAATTATCTGACCCTGGTAAATTATTTTATCCTTTTTAGTATTATGGAAAAACTTATGTAGCATATATTCATGGTTACTAGAATTATTACCTTTCTTTCAATGGTTCTATATTTGATTATTTTAACATCAAAGCCTTGTGCCGAAAATTGTTTGACTAAGTGTATTCATGCGTACTTGGCTACTTGCTGCTTGATTCCCAAATTAAGTTAATATAAGAAATGATTTATTATACCAGTATAAGTTATGTGTTTAATGTTGTAAATTGAAAATTCTAAATACTGACTGAAATATTTCGGTATAGATAGAGAATGTAAACATGGTTTATACTTCTATATAATTGATGTATAACTGAGACAAATAGGCGGATAAAGATATGGTAGCAAGAATCAAGCATCTGTGCATCATATGTACGTGTTTATGGCATTTATTCTCATGTTAATGAGTGTTTTATTTCTCCTACGCAGAGATCGTGACGACGTGA
Protein sequence

>MS.gene22612.t1

MFLLLWILEHFYLFLLDNARFKEKHLPNGDVYIGNFKGKLFHGKGKYTWSSGTIYEGDWVDGRRTGKGLVICPSGARFEGEFFRNSRHGHGTLAKSNRDVYIGNFKNNLFHGKGKYTRSSGTIYEGDWVDGRRTGKGRIIYPSGTIFEDEFSRNSRNGYGTLTKSNGDIYVGNFENDLFHGKGKYTWSYGTIHEGDWVDGRRTGKGRIIYPSGTIFEGEFSRNSRHGHDTLTKSDGDVYVGNFESDLIHGRGKYTWSNGTIYEADWVDEQRTGKGRIIYPSGASFEGEFLRNSRHGHGTLTKSDGDIYNGNFKSDIFHGKGKYTWSDGRIYEGTSFESEFSRNSRHGHGTLTKSNEDVLIGNFESNLFRSQGKETWSNGTIYEGKLSDPEIVTT